BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026161
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/244 (53%), Positives = 156/244 (63%), Gaps = 26/244 (10%)
Query: 1 MEFEDHEEQEEEMGL--PAGYDSSLGNSSQVRMGSSGGQATAEAAHPGRKARYRECLKNH 58
M FED EE E G+ P GYDS G + G G++ A K RYRECLKNH
Sbjct: 1 MNFEDQEEDMEMSGVNPPCGYDSLSGEGATSSGGGGVGRSKGVGA----KIRYRECLKNH 56
Query: 59 AVGIGGHALDGCGEFMAAGDEGTLDGLKCAACNCHRNFHRKEVDSSVVTPMAAGVPAAGG 118
AV IGGHA+DGC EFM +G++GTLD LKCAAC CHRNFHRKE +S + A VP
Sbjct: 57 AVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES--IGGRAHRVPT--- 111
Query: 119 GEVFFHPSQVPQFTPYYRTPAGYLHVAAHHRPLALPSTSGGGHSREDQEDASNLGGSGGS 178
+ P Q Q P GYLH+ + P P+ SG D+ED SN SGG+
Sbjct: 112 --YYNRPPQPHQ-------PPGYLHLTSPAAPYRPPAASG------DEEDTSNPSSSGGT 156
Query: 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238
KRFRTKFT EQK++ML AE+LGWRIQKHD+ V+QFC +TGV+R VLK+WMHNNK++L
Sbjct: 157 TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSL 216
Query: 239 GKKP 242
GKKP
Sbjct: 217 GKKP 220
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 124/199 (62%), Gaps = 16/199 (8%)
Query: 46 GRKARYRECLKNHAVGIGGHALDGCGEFMAAGDEGTLDGLKCAACNCHRNFHRKEVDSSV 105
G + R+RECLKN AV IGGHA+DGCGEFM AG EGT+D LKCAAC CHRNFHRKE+
Sbjct: 70 GSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELPYFH 129
Query: 106 VTPMAAGVPAAGGGEVFFHPSQVPQFTPYYRTPA--GYLHVAAHHRPLALPSTSGGGHSR 163
P P G +YR PA Y + PL L
Sbjct: 130 HAPPQHQPPPPPPG--------------FYRLPAPVSYRPPPSQAPPLQLALPPPQRERS 175
Query: 164 EDQEDASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVK 223
ED + S+ GG RKR RTKFT EQK+RML LAE++GWRIQ+ D+EV+Q+FC +TGV
Sbjct: 176 EDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVP 235
Query: 224 RHVLKVWMHNNKHTLGKKP 242
R VLKVW+HNNKHTLGK P
Sbjct: 236 RQVLKVWLHNNKHTLGKSP 254
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 110/191 (57%), Gaps = 9/191 (4%)
Query: 51 YRECLKNHAVGIGGHALDGCGEFMAAGDEGTLD--GLKCAACNCHRNFHRKEVDSSVVTP 108
Y+ECLKNHA +GGHALDGCGEFM + + D L+CAAC CHRNFHR++ ++
Sbjct: 31 YKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLNFL 90
Query: 109 MAAGVPAAGGGEVFFHPSQVPQFTPYYRTPAGYLHVAA-HHRPLALPSTSGGGHSREDQE 167
A + + G E P P Y A HH L+L S G ++
Sbjct: 91 TAPPISSPSGTE------SPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTV 144
Query: 168 DASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVL 227
S G RKR RTKFTPEQK +M AEK GW+I DE+ V++FCN+ G++R VL
Sbjct: 145 VRSENSSRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVGIERGVL 204
Query: 228 KVWMHNNKHTL 238
KVWMHNNK++L
Sbjct: 205 KVWMHNNKYSL 215
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 152 ALPSTSGGGHSREDQEDAS-----NLGGSGGSR----KRFRTKFTPEQKDRMLELAEKLG 202
+ P+++ R+ +E AS N G+GG KR RT TPEQ LE+ +
Sbjct: 2605 STPTSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQ----LEILYQKY 2660
Query: 203 WRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
+++ ++ G+K+ V++VW N +
Sbjct: 2661 LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 2693
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 152 ALPSTSGGGHSREDQEDAS-----NLGGSGGSR----KRFRTKFTPEQKDRMLELAEKLG 202
+ P+++ R+ +E AS N G+GG KR RT TPEQ LE+ +
Sbjct: 2614 STPTSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQ----LEILYQKY 2669
Query: 203 WRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
+++ ++ G+K+ V++VW N +
Sbjct: 2670 LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 2702
>sp|Q3LU39|PROP1_GORGO Homeobox protein prophet of Pit-1 OS=Gorilla gorilla gorilla
GN=PROP1 PE=3 SV=1
Length = 225
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 157 SGGGHSREDQEDASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQF 216
+GGG SR + G SR+R RT F+P Q LE E R Q D +
Sbjct: 49 AGGGRSRFSPQGGQR--GRPHSRRRHRTTFSPVQ----LEQLESAFGRNQYPDIWARESL 102
Query: 217 CNDTGVKRHVLKVWMHNNK 235
DTG+ ++VW N +
Sbjct: 103 ARDTGLSEARIQVWFQNRR 121
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 154 PSTSGGGHSR--EDQED---ASNLGGSGGSR----KRFRTKFTPEQKDRMLELAEKLGWR 204
P+T G R +D+ED + GG+ G KR RT TPEQ LE+ +
Sbjct: 2514 PATVSGSMKRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQ----LEILYEKYLL 2569
Query: 205 IQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
+++ + G+K+ V++VW N +
Sbjct: 2570 DSNPTRKMLDHIAREVGLKKRVVQVWFQNTR 2600
>sp|O75360|PROP1_HUMAN Homeobox protein prophet of Pit-1 OS=Homo sapiens GN=PROP1 PE=1
SV=2
Length = 226
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 157 SGGGHSREDQEDASNLGGSGG---SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVV 213
+GGG SR S GG G SR+R RT F+P Q LE E R Q D
Sbjct: 49 AGGGRSR-----FSPQGGQRGRPHSRRRHRTTFSPVQ----LEQLESAFGRNQYPDIWAR 99
Query: 214 QQFCNDTGVKRHVLKVWMHNNK 235
+ DTG+ ++VW N +
Sbjct: 100 ESLARDTGLSEARIQVWFQNRR 121
>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
Length = 363
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN-----N 234
KR RT FT EQ L++ + + D + +Q+ + TG+ R V++VW N
Sbjct: 220 KRARTSFTAEQ----LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275
Query: 235 KHT 237
KHT
Sbjct: 276 KHT 278
>sp|Q9UPM6|LHX6_HUMAN LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=2 SV=2
Length = 363
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN-----N 234
KR RT FT EQ L++ + + D + +Q+ + TG+ R V++VW N
Sbjct: 220 KRARTSFTAEQ----LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHK 275
Query: 235 KHT 237
KHT
Sbjct: 276 KHT 278
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
Length = 3550
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 164 EDQED---ASNLGGSGGSR----KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQF 216
ED+ED + GG+ G KR RT TPEQ LE+ + +++
Sbjct: 2520 EDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQ----LEILYEKYLLDSNPTRKMLDHI 2575
Query: 217 CNDTGVKRHVLKVWMHNNK 235
+ G+K+ V++VW N +
Sbjct: 2576 AREVGLKKRVVQVWFQNTR 2594
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 154 PSTSGGGHSR--EDQED---ASNLGGSGGSR----KRFRTKFTPEQKDRMLELAEKLGWR 204
P+T R +D+ED + GG+ G KR RT TPEQ LE+ +
Sbjct: 2526 PTTVAASLKRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTTITPEQ----LEILYEKYLL 2581
Query: 205 IQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
+++ + G+K+ V++VW N +
Sbjct: 2582 DSNPTRKMLDHIAREVGLKKRVVQVWFQNTR 2612
>sp|Q3LU41|PROP1_THEGE Homeobox protein prophet of Pit-1 OS=Theropithecus gelada GN=PROP1
PE=3 SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 174 GSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233
G SR+R RT F+P Q LE E R Q D + DTG+ ++VW N
Sbjct: 64 GRPHSRRRHRTTFSPVQ----LEQLESAFGRNQYPDIWARESLARDTGLSEARIQVWFQN 119
Query: 234 NK 235
+
Sbjct: 120 RR 121
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHD--EEVVQQFCNDTGVKRHVLKVWMHNNK 235
KR RT PEQ LE+ + W +Q + +++ + G+K+ V++VW N +
Sbjct: 1858 KRLRTTILPEQ----LEILYR--WYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTR 1909
>sp|Q8MJI9|PROP1_BOVIN Homeobox protein prophet of Pit-1 OS=Bos taurus GN=PROP1 PE=2 SV=1
Length = 226
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 174 GSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233
G SR+R RT F+P Q LE E R Q D + DTG+ ++VW N
Sbjct: 64 GRPHSRRRHRTTFSPAQ----LEQLESAFGRNQYPDIWARESLAQDTGLSEARIQVWFQN 119
Query: 234 NK 235
+
Sbjct: 120 RR 121
>sp|P31367|PO6F1_DANRE POU domain, class 6, transcription factor 1 OS=Danio rerio
GN=pou6f1 PE=2 SV=1
Length = 610
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 172 LGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWM 231
+GG +++ RT FTP+ + + EK + E+ ++ D R V++VW
Sbjct: 536 VGGEPSKKRKRRTSFTPQAIEVLNTYFEKNSLPTGQEITEIAKELNYD----REVVRVWF 591
Query: 232 HNNKHTL 238
N + TL
Sbjct: 592 CNRRQTL 598
>sp|Q68G74|LHX8_HUMAN LIM/homeobox protein Lhx8 OS=Homo sapiens GN=LHX8 PE=2 SV=2
Length = 356
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
KR RT FT +Q L++ + + D + +Q+ TG+ R V++VW N +
Sbjct: 226 KRARTSFTADQ----LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCR 277
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 160 GHSREDQEDASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCND 219
G E ++DA ++R RT F+ +Q D + E++ R Q D ++
Sbjct: 166 GSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDAL----ERIFARTQYPDVYTREELAQS 221
Query: 220 TGVKRHVLKVWMHNNKHTLGKK 241
TG+ ++VW N + L K+
Sbjct: 222 TGLTEARVQVWFSNRRARLRKQ 243
>sp|P56223|PO6F1_RAT POU domain, class 6, transcription factor 1 OS=Rattus norvegicus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 165 DQEDASNL----GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT 220
+QE NL GG +++ RT FTP+ + + EK + E+ ++ D
Sbjct: 216 NQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYD- 274
Query: 221 GVKRHVLKVWMHNNKHTL 238
R V++VW N + TL
Sbjct: 275 ---REVVRVWFCNRRQTL 289
>sp|Q9GLL9|PROP1_PIG Homeobox protein prophet of Pit-1 OS=Sus scrofa GN=PROP1 PE=2 SV=1
Length = 226
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
SR+R RT F+P Q LE E R Q D + DTG+ ++VW N +
Sbjct: 68 SRRRHRTTFSPAQ----LEQLESAFGRNQYPDIWAREGLARDTGLSEARIQVWFQNRR 121
>sp|Q07916|PO6F1_MOUSE POU domain, class 6, transcription factor 1 OS=Mus musculus
GN=Pou6f1 PE=2 SV=1
Length = 301
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 165 DQEDASNL----GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT 220
+QE NL GG +++ RT FTP+ + + EK + E+ ++ D
Sbjct: 216 NQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYD- 274
Query: 221 GVKRHVLKVWMHNNKHTL 238
R V++VW N + TL
Sbjct: 275 ---REVVRVWFCNRRQTL 289
>sp|O35652|LHX8_MOUSE LIM/homeobox protein Lhx8 OS=Mus musculus GN=Lhx8 PE=2 SV=4
Length = 367
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
KR RT FT +Q L++ + + D + +Q+ TG+ R V++VW N +
Sbjct: 247 KRARTSFTADQ----LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCR 298
>sp|Q14863|PO6F1_HUMAN POU domain, class 6, transcription factor 1 OS=Homo sapiens
GN=POU6F1 PE=1 SV=1
Length = 301
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 165 DQEDASNL----GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT 220
+QE NL GG +++ RT FTP+ + + EK + E+ ++ D
Sbjct: 216 NQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYD- 274
Query: 221 GVKRHVLKVWMHNNKHTL 238
R V++VW N + TL
Sbjct: 275 ---REVVRVWFCNRRQTL 289
>sp|P97458|PROP1_MOUSE Homeobox protein prophet of Pit-1 OS=Mus musculus GN=Prop1 PE=1
SV=1
Length = 223
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 174 GSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233
G SR+R RT F P Q LE E R Q D + DTG+ ++VW N
Sbjct: 61 GRPHSRRRHRTTFNPAQ----LEQLESAFGRNQYPDIWAREGLAQDTGLSEARIQVWFQN 116
Query: 234 NK 235
+
Sbjct: 117 RR 118
>sp|Q9TTD8|PROP1_CANFA Homeobox protein prophet of Pit-1 OS=Canis familiaris GN=PROP1 PE=3
SV=1
Length = 226
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
SR+R RT F P Q LE E R Q D + DTG+ ++VW N +
Sbjct: 68 SRRRHRTTFNPGQ----LEQLETAFGRNQYPDIWAREGLARDTGLSEARIQVWFQNRR 121
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 163 REDQEDASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGV 222
+ED E A S KR RT T +Q + L+ A K + +H V +Q ++TG+
Sbjct: 141 KEDYETAKQNDDSEAGAKRPRTTITAKQLE-TLKNAYKNSPKPARH---VREQLSSETGL 196
Query: 223 KRHVLKVWMHNNK 235
V++VW N +
Sbjct: 197 DMRVVQVWFQNRR 209
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 163 REDQEDASNLGGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGV 222
+ED E A S KR RT T +Q + L+ A K + +H V +Q ++TG+
Sbjct: 141 KEDYETAKQNDDSEAGAKRPRTTITAKQLE-TLKNAYKNSPKPARH---VREQLSSETGL 196
Query: 223 KRHVLKVWMHNNK 235
V++VW N +
Sbjct: 197 DMRVVQVWFQNRR 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,716,512
Number of Sequences: 539616
Number of extensions: 4753813
Number of successful extensions: 13049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 13005
Number of HSP's gapped (non-prelim): 81
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)