Query 026161
Match_columns 242
No_of_seqs 155 out of 276
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.8 1.4E-21 4.9E-26 146.6 4.6 66 176-241 14-79 (80)
2 1wh5_A ZF-HD homeobox family p 99.8 2.1E-20 7.2E-25 139.7 4.7 65 177-241 15-79 (80)
3 1wi3_A DNA-binding protein SAT 99.5 1.2E-15 4E-20 114.3 2.8 60 176-238 4-63 (71)
4 2da4_A Hypothetical protein DK 99.5 3.1E-16 1.1E-20 115.4 -0.6 65 176-240 5-69 (80)
5 2da3_A Alpha-fetoprotein enhan 99.5 1.9E-15 6.4E-20 110.4 1.7 62 176-241 14-75 (80)
6 2dmq_A LIM/homeobox protein LH 99.5 2.2E-15 7.4E-20 110.5 1.0 61 176-240 4-64 (80)
7 2cra_A Homeobox protein HOX-B1 99.4 4.2E-14 1.4E-18 101.7 3.5 62 176-241 4-65 (70)
8 2da2_A Alpha-fetoprotein enhan 99.4 4.9E-14 1.7E-18 100.9 3.0 62 176-241 4-65 (70)
9 2kt0_A Nanog, homeobox protein 99.4 9.4E-14 3.2E-18 102.6 4.2 62 176-241 19-80 (84)
10 2djn_A Homeobox protein DLX-5; 99.4 5.5E-14 1.9E-18 101.1 2.6 62 176-241 4-65 (70)
11 2dmu_A Homeobox protein goosec 99.4 4.1E-14 1.4E-18 101.6 1.6 62 176-241 4-65 (70)
12 2dmt_A Homeobox protein BARH-l 99.4 9.9E-14 3.4E-18 102.2 3.4 62 176-241 14-75 (80)
13 2hdd_A Protein (engrailed home 99.4 5.1E-14 1.7E-18 98.7 1.1 60 178-241 2-61 (61)
14 2da1_A Alpha-fetoprotein enhan 99.4 6.1E-14 2.1E-18 100.5 1.4 62 176-241 4-65 (70)
15 2dms_A Homeobox protein OTX2; 99.4 7.6E-14 2.6E-18 102.7 1.9 61 177-241 5-65 (80)
16 1bw5_A ISL-1HD, insulin gene e 99.4 1.3E-13 4.4E-18 97.9 2.5 60 178-241 2-61 (66)
17 2vi6_A Homeobox protein nanog; 99.4 9.1E-14 3.1E-18 97.6 1.3 60 178-241 2-61 (62)
18 2cue_A Paired box protein PAX6 99.4 6.3E-14 2.1E-18 103.3 0.1 61 176-240 4-64 (80)
19 2e1o_A Homeobox protein PRH; D 99.3 1.5E-13 5E-18 98.8 1.5 61 176-240 4-64 (70)
20 2m0c_A Homeobox protein arista 99.3 3.7E-13 1.3E-17 96.9 3.1 61 177-241 7-67 (75)
21 2h1k_A IPF-1, pancreatic and d 99.3 1.2E-13 4.2E-18 97.5 0.5 59 178-240 2-60 (63)
22 1ig7_A Homeotic protein MSX-1; 99.3 1.8E-13 6.1E-18 94.6 0.6 57 180-240 1-57 (58)
23 2dn0_A Zinc fingers and homeob 99.3 4.6E-13 1.6E-17 97.8 2.8 60 178-241 7-66 (76)
24 1b8i_A Ultrabithorax, protein 99.3 2.6E-13 8.8E-18 100.6 1.2 61 177-241 18-78 (81)
25 3rkq_A Homeobox protein NKX-2. 99.3 2.9E-13 1E-17 92.7 1.3 57 178-238 1-57 (58)
26 2l7z_A Homeobox protein HOX-A1 99.3 7.1E-13 2.4E-17 96.3 3.4 61 177-241 5-65 (73)
27 1jgg_A Segmentation protein EV 99.3 2.4E-13 8.1E-18 95.0 0.6 58 180-241 2-59 (60)
28 1ahd_P Antennapedia protein mu 99.3 1.3E-13 4.4E-18 99.0 -0.8 58 179-240 2-59 (68)
29 1nk2_P Homeobox protein VND; h 99.3 4.6E-13 1.6E-17 98.0 1.6 60 177-240 7-66 (77)
30 2k40_A Homeobox expressed in E 99.3 3.7E-13 1.3E-17 95.8 0.7 59 179-241 1-59 (67)
31 1ftt_A TTF-1 HD, thyroid trans 99.3 5.1E-13 1.7E-17 95.7 0.9 59 179-241 2-60 (68)
32 3a01_A Homeodomain-containing 99.3 4.7E-13 1.6E-17 101.8 0.7 60 177-240 15-74 (93)
33 1du6_A PBX1, homeobox protein 99.3 9.1E-13 3.1E-17 92.9 2.1 63 178-241 2-64 (64)
34 1puf_A HOX-1.7, homeobox prote 99.3 7.9E-13 2.7E-17 96.8 1.8 60 177-240 11-70 (77)
35 1fjl_A Paired protein; DNA-bin 99.3 4.2E-13 1.4E-17 98.9 0.2 60 177-240 16-75 (81)
36 2r5y_A Homeotic protein sex co 99.3 4.3E-13 1.5E-17 100.4 0.3 61 177-241 26-86 (88)
37 1zq3_P PRD-4, homeotic bicoid 99.3 3.8E-13 1.3E-17 96.4 -0.0 58 179-240 2-59 (68)
38 1yz8_P Pituitary homeobox 2; D 99.3 1E-13 3.6E-18 99.1 -3.1 59 178-240 2-60 (68)
39 2ly9_A Zinc fingers and homeob 99.3 1.3E-12 4.3E-17 94.5 2.5 59 179-241 6-64 (74)
40 3nar_A ZHX1, zinc fingers and 99.3 1.3E-12 4.4E-17 99.6 2.1 61 177-241 23-83 (96)
41 1akh_A Protein (mating-type pr 99.2 1.2E-12 4.2E-17 91.2 1.4 57 178-238 4-60 (61)
42 2ecc_A Homeobox and leucine zi 99.2 1.2E-12 4.2E-17 98.3 1.1 57 181-241 5-61 (76)
43 3a02_A Homeobox protein arista 99.2 1.7E-12 5.7E-17 90.7 1.3 56 182-241 2-57 (60)
44 2cuf_A FLJ21616 protein; homeo 99.2 9.8E-13 3.4E-17 99.9 0.1 60 177-240 5-79 (95)
45 1e3o_C Octamer-binding transcr 99.2 2.2E-12 7.5E-17 106.4 1.9 61 177-241 99-159 (160)
46 1b72_A Protein (homeobox prote 99.2 7.3E-13 2.5E-17 100.9 -1.1 60 177-240 32-91 (97)
47 2da5_A Zinc fingers and homeob 99.2 3.4E-12 1.1E-16 93.3 2.2 58 180-241 8-65 (75)
48 1au7_A Protein PIT-1, GHF-1; c 99.2 4.3E-12 1.5E-16 103.6 2.8 62 176-241 84-145 (146)
49 1x2n_A Homeobox protein pknox1 99.2 5.5E-12 1.9E-16 91.1 2.0 64 177-241 5-68 (73)
50 1puf_B PRE-B-cell leukemia tra 99.2 2.4E-12 8E-17 93.0 -0.0 62 179-241 1-62 (73)
51 1b72_B Protein (PBX1); homeodo 99.2 2.2E-12 7.5E-17 95.8 -0.3 62 179-241 1-62 (87)
52 3d1n_I POU domain, class 6, tr 99.2 7.8E-12 2.7E-16 101.9 2.5 61 176-240 90-150 (151)
53 2xsd_C POU domain, class 3, tr 99.2 5.3E-12 1.8E-16 105.1 1.2 62 176-241 96-157 (164)
54 2dmn_A Homeobox protein TGIF2L 99.1 1.1E-11 3.6E-16 92.6 1.6 64 176-240 4-67 (83)
55 2hi3_A Homeodomain-only protei 99.1 5.3E-12 1.8E-16 91.5 -0.1 58 180-240 3-60 (73)
56 2d5v_A Hepatocyte nuclear fact 99.1 1.5E-11 5.3E-16 100.9 2.5 61 177-241 95-155 (164)
57 1uhs_A HOP, homeodomain only p 99.1 6.7E-12 2.3E-16 90.6 -0.5 58 180-240 2-59 (72)
58 3a03_A T-cell leukemia homeobo 99.1 6.5E-12 2.2E-16 86.9 -0.6 54 184-241 2-55 (56)
59 1mnm_C Protein (MAT alpha-2 tr 99.1 2.9E-11 9.9E-16 90.3 2.6 62 178-240 26-87 (87)
60 2da6_A Hepatocyte nuclear fact 99.1 1.3E-11 4.3E-16 97.5 -0.0 61 176-240 3-84 (102)
61 1lfb_A Liver transcription fac 99.1 2.1E-11 7.2E-16 94.8 1.2 61 177-241 7-88 (99)
62 3l1p_A POU domain, class 5, tr 99.0 2.1E-11 7.1E-16 100.3 -0.2 60 177-240 94-153 (155)
63 1k61_A Mating-type protein alp 99.0 3.1E-11 1.1E-15 84.0 0.5 57 183-240 2-58 (60)
64 2ecb_A Zinc fingers and homeob 99.0 5E-11 1.7E-15 91.4 1.5 57 180-241 13-69 (89)
65 1le8_B Mating-type protein alp 99.0 7.6E-11 2.6E-15 87.6 2.3 62 179-241 2-63 (83)
66 2dmp_A Zinc fingers and homeob 99.0 5.7E-11 1.9E-15 89.8 1.3 54 184-241 18-71 (89)
67 2cqx_A LAG1 longevity assuranc 98.9 1.3E-10 4.5E-15 85.0 -0.2 57 180-240 9-66 (72)
68 2e19_A Transcription factor 8; 98.9 4.6E-10 1.6E-14 80.5 2.1 55 182-240 6-60 (64)
69 2l9r_A Homeobox protein NKX-3. 98.8 1.2E-09 4E-14 80.0 2.0 53 185-241 10-62 (69)
70 3nau_A Zinc fingers and homeob 98.7 1.3E-09 4.5E-14 80.3 -0.4 52 185-240 10-61 (66)
71 2da7_A Zinc finger homeobox pr 98.7 2.8E-09 9.7E-14 79.8 1.1 46 188-237 14-59 (71)
72 1ic8_A Hepatocyte nuclear fact 98.7 1.4E-09 4.9E-14 93.5 -1.0 61 177-241 113-194 (194)
73 3k2a_A Homeobox protein MEIS2; 98.7 3.2E-09 1.1E-13 76.4 0.4 57 184-241 3-59 (67)
74 2h8r_A Hepatocyte nuclear fact 98.6 1.4E-08 4.8E-13 89.5 2.1 60 176-239 139-219 (221)
75 1mh3_A Maltose binding-A1 home 98.5 2.8E-08 9.6E-13 87.6 0.8 57 179-239 365-421 (421)
76 1x2m_A LAG1 longevity assuranc 98.4 2E-08 6.7E-13 73.2 -0.3 50 188-240 9-58 (64)
77 2lk2_A Homeobox protein TGIF1; 97.8 2.5E-06 8.6E-11 65.8 -0.1 56 184-240 10-65 (89)
78 2nzz_A Penetratin conjugated G 95.9 0.00058 2E-08 45.2 -1.7 16 226-241 2-17 (37)
79 2elh_A CG11849-PA, LD40883P; s 93.3 0.041 1.4E-06 40.0 2.4 46 179-233 16-61 (87)
80 2glo_A Brinker CG9653-PA; prot 91.6 0.044 1.5E-06 37.1 0.6 46 183-233 3-48 (59)
81 2jn6_A Protein CGL2762, transp 90.3 0.077 2.6E-06 38.6 0.9 45 183-235 3-48 (97)
82 1hlv_A CENP-B, major centromer 89.4 0.088 3E-06 39.8 0.6 48 181-235 3-50 (131)
83 2ofy_A Putative XRE-family tra 88.8 0.086 2.9E-06 36.9 0.1 50 183-235 3-52 (86)
84 2rn7_A IS629 ORFA; helix, all 88.3 0.17 5.9E-06 37.3 1.5 50 183-233 4-53 (108)
85 1tc3_C Protein (TC3 transposas 88.1 0.17 5.8E-06 30.9 1.2 43 184-235 4-46 (51)
86 1jko_C HIN recombinase, DNA-in 86.0 0.17 5.7E-06 31.6 0.3 42 185-235 5-46 (52)
87 2ao9_A Phage protein; structur 84.8 0.084 2.9E-06 44.1 -2.0 53 180-235 18-73 (155)
88 4dyq_A Gene 1 protein; GP1, oc 83.9 0.09 3.1E-06 41.8 -2.1 47 179-234 5-53 (140)
89 1iuf_A Centromere ABP1 protein 81.0 0.42 1.5E-05 37.8 0.8 51 180-234 6-60 (144)
90 2k27_A Paired box protein PAX- 78.7 0.9 3.1E-05 35.5 2.0 44 184-236 24-67 (159)
91 1pdn_C Protein (PRD paired); p 78.5 0.83 2.8E-05 33.1 1.6 42 184-234 16-57 (128)
92 1u78_A TC3 transposase, transp 77.2 1.1 3.6E-05 33.5 1.9 44 184-236 5-48 (141)
93 3bdn_A Lambda repressor; repre 76.8 0.33 1.1E-05 39.8 -1.1 51 184-235 5-55 (236)
94 1k78_A Paired box protein PAX5 76.4 0.79 2.7E-05 35.2 1.0 42 184-234 31-72 (149)
95 1je8_A Nitrate/nitrite respons 75.3 0.34 1.2E-05 34.7 -1.2 50 182-241 18-67 (82)
96 3c57_A Two component transcrip 71.0 0.57 1.9E-05 34.4 -1.0 48 184-241 26-73 (95)
97 3kz3_A Repressor protein CI; f 70.1 0.59 2E-05 32.4 -1.0 49 186-235 2-50 (80)
98 3bni_A Putative TETR-family tr 69.3 0.78 2.7E-05 36.6 -0.5 46 188-234 42-87 (229)
99 1p4w_A RCSB; solution structur 67.6 0.8 2.7E-05 34.6 -0.8 48 183-240 32-79 (99)
100 1fse_A GERE; helix-turn-helix 67.2 0.56 1.9E-05 31.6 -1.6 49 182-240 8-56 (74)
101 1lmb_3 Protein (lambda repress 65.9 2.8 9.7E-05 29.2 1.9 22 213-234 33-54 (92)
102 2rnj_A Response regulator prot 65.4 0.52 1.8E-05 34.0 -2.1 49 183-241 27-75 (91)
103 1x3u_A Transcriptional regulat 65.1 0.52 1.8E-05 32.4 -2.1 48 184-241 15-62 (79)
104 2qko_A Possible transcriptiona 63.9 1.2 4E-05 34.7 -0.5 55 179-234 18-72 (215)
105 1ity_A TRF1; helix-turn-helix, 63.7 10 0.00035 26.4 4.5 25 178-202 5-29 (69)
106 3cwr_A Transcriptional regulat 63.3 1.5 5.2E-05 33.1 0.0 53 181-234 8-61 (208)
107 3dcf_A Transcriptional regulat 59.7 1.1 3.8E-05 34.3 -1.3 47 187-234 29-75 (218)
108 2np3_A Putative TETR-family re 58.8 2.6 8.9E-05 32.6 0.7 47 187-234 28-74 (212)
109 1fex_A TRF2-interacting telome 58.1 6.7 0.00023 27.4 2.6 47 183-230 2-49 (59)
110 3ej9_B Beta-subunit of trans-3 56.7 12 0.00042 27.8 3.9 36 186-235 11-46 (70)
111 2r1j_L Repressor protein C2; p 55.7 3.7 0.00013 26.5 0.9 22 213-234 21-42 (68)
112 3hug_A RNA polymerase sigma fa 54.5 0.59 2E-05 33.7 -3.5 46 184-239 36-82 (92)
113 1zug_A Phage 434 CRO protein; 53.6 4.1 0.00014 26.6 0.9 23 213-235 19-41 (71)
114 3clo_A Transcriptional regulat 52.7 2.3 7.7E-05 35.9 -0.7 50 182-241 194-243 (258)
115 2p7v_B Sigma-70, RNA polymeras 52.5 1.4 4.7E-05 30.0 -1.7 51 185-240 5-55 (68)
116 2np5_A Transcriptional regulat 51.3 2.2 7.7E-05 33.1 -0.9 28 207-234 26-53 (203)
117 3him_A Probable transcriptiona 51.1 4.8 0.00016 30.4 1.0 46 188-234 15-60 (211)
118 3m20_A 4-oxalocrotonate tautom 51.0 22 0.00074 23.8 4.2 36 185-234 9-44 (62)
119 3nrg_A TETR family transcripti 50.6 3.3 0.00011 31.7 -0.0 49 185-234 9-57 (217)
120 3ulq_B Transcriptional regulat 50.4 2.2 7.7E-05 31.3 -0.9 48 183-240 27-74 (90)
121 1u78_A TC3 transposase, transp 50.3 6.2 0.00021 29.2 1.5 45 184-236 59-105 (141)
122 3ccy_A Putative TETR-family tr 49.9 3.9 0.00013 31.4 0.3 45 189-234 14-58 (203)
123 1r69_A Repressor protein CI; g 49.8 5.2 0.00018 25.9 0.9 23 213-235 17-39 (69)
124 2hku_A A putative transcriptio 49.4 2.7 9.2E-05 32.7 -0.7 44 189-234 20-63 (215)
125 2q0o_A Probable transcriptiona 48.9 2.3 8E-05 35.2 -1.2 48 183-240 173-220 (236)
126 3kz9_A SMCR; transcriptional r 48.0 3 0.0001 31.4 -0.6 51 183-234 10-61 (206)
127 3on2_A Probable transcriptiona 47.7 8.6 0.00029 28.6 1.9 28 207-234 29-56 (199)
128 3kkd_A Transcriptional regulat 47.4 6.9 0.00023 30.9 1.4 46 188-234 34-79 (237)
129 3gzi_A Transcriptional regulat 47.0 3 0.0001 32.0 -0.7 46 188-234 16-61 (218)
130 1adr_A P22 C2 repressor; trans 47.0 5.9 0.0002 26.2 0.8 19 214-232 22-40 (76)
131 1j9i_A GPNU1 DBD;, terminase s 46.8 2.7 9.3E-05 28.9 -0.9 23 213-235 5-27 (68)
132 2lci_A Protein OR36; structura 46.3 20 0.00068 28.7 3.9 36 187-222 59-99 (134)
133 2o8x_A Probable RNA polymerase 45.8 1 3.6E-05 29.9 -3.1 47 184-240 14-61 (70)
134 1p2x_A RNG2 protein, RAS GTPas 45.2 16 0.00055 29.7 3.3 24 184-207 132-155 (159)
135 3f1b_A TETR-like transcription 45.0 3.8 0.00013 30.9 -0.5 46 188-234 13-58 (203)
136 2x48_A CAG38821; archeal virus 44.9 5.3 0.00018 25.7 0.3 40 185-233 13-54 (55)
137 1dj7_A Ferredoxin thioredoxin 44.6 29 0.001 27.8 4.7 31 187-218 7-41 (117)
138 2k9q_A Uncharacterized protein 44.4 7 0.00024 26.5 0.9 15 209-223 43-57 (77)
139 3qqa_A CMER; alpha-helical, he 43.8 4.1 0.00014 31.1 -0.4 47 187-234 17-63 (216)
140 3b7h_A Prophage LP1 protein 11 43.7 7.3 0.00025 25.9 0.9 21 214-234 24-44 (78)
141 3mvp_A TETR/ACRR transcription 43.3 2.6 8.8E-05 32.1 -1.6 47 187-234 24-70 (217)
142 2ys9_A Homeobox and leucine zi 43.1 5.9 0.0002 29.4 0.4 36 192-231 19-54 (70)
143 3bru_A Regulatory protein, TET 43.1 2.8 9.7E-05 32.3 -1.5 46 188-234 29-74 (222)
144 1l3l_A Transcriptional activat 42.5 2.8 9.4E-05 34.7 -1.7 49 182-240 170-218 (234)
145 3q0w_A HTH-type transcriptiona 42.3 3.7 0.00012 32.7 -1.0 47 187-234 42-88 (236)
146 2iai_A Putative transcriptiona 41.8 5 0.00017 31.7 -0.2 28 207-234 47-74 (230)
147 3m21_A Probable tautomerase HP 41.8 36 0.0012 22.9 4.2 36 185-234 13-48 (67)
148 1y7y_A C.AHDI; helix-turn-heli 41.8 8.5 0.00029 25.2 1.0 22 213-234 29-50 (74)
149 1s7o_A Hypothetical UPF0122 pr 41.1 1.6 5.4E-05 33.6 -3.2 46 184-239 21-67 (113)
150 2cki_A Ulilysin; metalloprotea 40.7 15 0.00051 32.3 2.6 19 181-199 236-254 (262)
151 3mzy_A RNA polymerase sigma-H 40.3 1.5 5.2E-05 32.7 -3.3 46 184-239 108-153 (164)
152 2v57_A TETR family transcripti 40.1 3.9 0.00013 30.7 -1.0 44 188-234 13-56 (190)
153 4fcy_A Transposase; rnaseh, DD 40.1 11 0.00038 34.5 1.8 44 185-232 22-74 (529)
154 2ef8_A C.ECOT38IS, putative tr 39.4 9.6 0.00033 25.7 1.0 23 213-235 26-48 (84)
155 3kkc_A TETR family transcripti 39.2 3.4 0.00012 30.7 -1.5 46 188-234 11-56 (177)
156 3g7r_A Putative transcriptiona 39.0 6.3 0.00022 30.9 -0.0 46 188-234 34-79 (221)
157 1v74_A Colicin D; colicin D - 38.9 23 0.00079 28.2 3.2 38 183-220 7-44 (107)
158 3bs3_A Putative DNA-binding pr 38.5 4.8 0.00016 26.7 -0.7 19 207-225 49-67 (76)
159 1a04_A Nitrate/nitrite respons 38.2 6.4 0.00022 30.8 -0.1 48 184-241 153-200 (215)
160 2iu5_A DHAS, YCEG, HTH-type dh 38.2 6.7 0.00023 30.0 -0.0 46 188-234 12-57 (195)
161 2rgt_A Fusion of LIM/homeobox 38.0 1.2 4E-05 35.8 -4.5 23 177-199 134-156 (169)
162 3lwj_A Putative TETR-family tr 37.9 5.4 0.00018 30.2 -0.6 46 188-234 11-56 (202)
163 2zb9_A Putative transcriptiona 37.8 5.3 0.00018 30.8 -0.7 45 189-234 23-67 (214)
164 3mb2_B 4-oxalocrotonate tautom 37.7 42 0.0014 25.0 4.2 40 179-235 9-48 (72)
165 1tty_A Sigma-A, RNA polymerase 37.5 3.5 0.00012 29.5 -1.6 51 185-240 18-68 (87)
166 1x41_A Transcriptional adaptor 37.2 29 0.001 23.5 3.2 24 179-202 4-27 (60)
167 2fq4_A Transcriptional regulat 37.1 4.5 0.00015 31.0 -1.1 45 189-234 12-56 (192)
168 2kpj_A SOS-response transcript 36.5 7.5 0.00026 27.5 0.0 17 208-224 49-65 (94)
169 2i10_A Putative TETR transcrip 36.1 6.1 0.00021 30.7 -0.6 27 207-233 28-54 (202)
170 2ict_A Antitoxin HIGA; helix-t 35.8 11 0.00037 26.5 0.8 18 207-224 47-64 (94)
171 2oer_A Probable transcriptiona 35.8 4.8 0.00017 31.4 -1.2 54 180-234 15-68 (214)
172 2hyt_A TETR-family transcripti 35.7 6.4 0.00022 30.2 -0.5 45 189-234 12-56 (197)
173 3hta_A EBRA repressor; TETR fa 35.6 11 0.00039 29.6 0.9 28 207-234 45-72 (217)
174 3fiw_A Putative TETR-family tr 35.4 9.9 0.00034 30.5 0.6 50 179-234 18-69 (211)
175 2ba3_A NIKA; dimer, bacterial 34.9 25 0.00086 22.9 2.5 25 180-204 16-40 (51)
176 1w0t_A Telomeric repeat bindin 34.8 48 0.0016 21.7 3.8 20 183-202 2-21 (53)
177 1l0o_C Sigma factor; bergerat 34.6 8.2 0.00028 30.4 0.0 45 184-238 197-242 (243)
178 3v6g_A Probable transcriptiona 34.4 5.5 0.00019 31.5 -1.1 28 207-234 31-58 (208)
179 3s5r_A Transcriptional regulat 34.4 6 0.00021 30.1 -0.8 28 207-234 27-54 (216)
180 2qtq_A Transcriptional regulat 34.3 6.8 0.00023 29.7 -0.5 28 207-234 33-60 (213)
181 2a6c_A Helix-turn-helix motif; 34.1 11 0.00037 26.2 0.5 18 208-225 59-76 (83)
182 3abf_A 4-oxalocrotonate tautom 33.5 66 0.0022 20.8 4.4 36 186-235 12-47 (64)
183 1gyx_A YDCE, B1461, hypothetic 33.2 51 0.0018 22.8 4.0 36 185-234 11-46 (76)
184 3c3w_A Two component transcrip 33.0 7.7 0.00026 31.0 -0.5 48 184-241 148-195 (225)
185 2b5a_A C.BCLI; helix-turn-heli 32.7 11 0.00039 24.9 0.5 20 214-233 27-46 (77)
186 2dg8_A Putative TETR-family tr 32.6 8.7 0.0003 29.3 -0.2 28 207-234 26-53 (193)
187 3g1o_A Transcriptional regulat 32.5 6.9 0.00024 31.4 -0.8 47 187-234 41-87 (255)
188 1ku3_A Sigma factor SIGA; heli 32.3 3.6 0.00012 28.2 -2.2 51 184-239 9-59 (73)
189 1p2f_A Response regulator; DRR 32.2 6.8 0.00023 30.7 -0.9 51 184-240 144-197 (220)
190 3he0_A Transcriptional regulat 31.6 11 0.00038 28.2 0.3 28 207-234 28-55 (196)
191 3o39_A Periplasmic protein rel 31.6 27 0.00091 27.2 2.5 17 184-200 89-105 (108)
192 2gwr_A DNA-binding response re 31.2 7.1 0.00024 31.3 -0.9 51 184-240 152-207 (238)
193 3lay_A Zinc resistance-associa 31.2 47 0.0016 27.8 4.1 40 183-222 65-124 (175)
194 1k81_A EIF-2-beta, probable tr 30.6 10 0.00034 24.2 -0.1 13 83-95 20-32 (36)
195 2l49_A C protein; P2 bacteriop 30.4 17 0.00057 25.5 1.0 16 208-223 44-61 (99)
196 1nee_A EIF-2-beta, probable tr 30.0 14 0.00047 30.1 0.6 15 82-96 121-135 (138)
197 1hlv_A CENP-B, major centromer 29.9 1.1E+02 0.0038 22.4 5.7 59 178-238 65-130 (131)
198 2rae_A Transcriptional regulat 29.9 11 0.00039 28.5 0.1 29 207-235 34-62 (207)
199 3b64_A Macrophage migration in 29.7 50 0.0017 24.2 3.7 39 186-239 68-106 (112)
200 3vib_A MTRR; helix-turn-helix 29.4 11 0.00039 28.9 0.0 44 190-234 11-54 (210)
201 1pb6_A Hypothetical transcript 29.2 5.5 0.00019 30.2 -1.8 46 188-234 17-62 (212)
202 1p5s_A RAS GTPase-activating-l 29.0 40 0.0014 28.6 3.3 24 184-207 176-199 (203)
203 3omt_A Uncharacterized protein 28.9 8.7 0.0003 25.6 -0.7 19 207-225 47-65 (73)
204 2fnf_X Putative RAS effector N 28.7 27 0.00092 24.9 1.9 30 65-100 36-67 (72)
205 2wiu_B HTH-type transcriptiona 28.7 18 0.0006 24.6 0.9 17 208-224 52-68 (88)
206 2id3_A Putative transcriptiona 28.7 4.6 0.00016 31.9 -2.5 45 189-234 40-84 (225)
207 1t8t_A Heparan sulfate D-gluco 28.6 82 0.0028 25.9 5.1 34 179-223 233-266 (271)
208 1xsv_A Hypothetical UPF0122 pr 28.6 2.5 8.6E-05 32.2 -3.9 46 184-239 24-70 (113)
209 3qp6_A CVIR transcriptional re 28.4 9.9 0.00034 32.5 -0.6 50 182-241 194-243 (265)
210 3lhq_A Acrab operon repressor 28.2 7.6 0.00026 29.3 -1.2 47 187-234 12-58 (220)
211 1g3n_C V-cyclin; cyclin-depend 27.9 1E+02 0.0035 25.9 5.7 42 185-226 125-168 (257)
212 2xi8_A Putative transcription 27.8 8 0.00027 24.7 -1.0 23 213-235 17-39 (66)
213 3klo_A Transcriptional regulat 27.6 8.4 0.00029 30.6 -1.1 48 184-241 158-205 (225)
214 3mnl_A KSTR, transcriptional r 27.4 4.9 0.00017 30.3 -2.4 46 188-234 19-64 (203)
215 2dim_A Cell division cycle 5-l 27.4 54 0.0019 22.6 3.3 23 180-202 6-28 (70)
216 2qib_A TETR-family transcripti 27.3 6.7 0.00023 31.1 -1.7 45 189-234 13-57 (231)
217 1zk8_A Transcriptional regulat 27.3 14 0.00047 27.6 0.1 29 207-235 25-53 (183)
218 3kyd_D Small ubiquitin-related 27.2 60 0.0021 25.5 3.8 26 212-237 66-91 (115)
219 2kvr_A Ubiquitin carboxyl-term 27.1 42 0.0014 26.6 3.0 29 211-239 70-98 (130)
220 2k27_A Paired box protein PAX- 26.8 45 0.0015 25.6 3.0 52 183-238 81-139 (159)
221 2jxx_A Nfatc2-interacting prot 26.7 42 0.0014 25.5 2.8 24 213-236 53-76 (97)
222 3rjz_A N-type ATP pyrophosphat 26.6 45 0.0015 28.9 3.3 44 185-229 99-147 (237)
223 1dzk_A PIG OBP, odorant-bindin 26.5 45 0.0015 25.2 2.9 24 183-206 120-144 (157)
224 3omd_A Uncharacterized protein 26.4 22 0.00075 29.3 1.2 51 179-231 83-134 (145)
225 4aci_A HTH-type transcriptiona 26.2 5.7 0.00019 29.9 -2.2 28 207-234 31-58 (191)
226 3cdl_A Transcriptional regulat 26.2 15 0.00053 28.2 0.2 46 188-234 8-53 (203)
227 1umq_A Photosynthetic apparatu 26.1 21 0.0007 26.3 0.9 35 190-232 42-76 (81)
228 2jpc_A SSRB; DNA binding prote 26.1 4.9 0.00017 26.1 -2.3 29 213-241 16-44 (61)
229 3ej9_A Alpha-subunit of trans- 26.0 81 0.0028 22.0 4.0 35 186-234 12-46 (76)
230 2w96_A G1/S-specific cyclin-D1 25.9 98 0.0033 26.2 5.3 42 184-225 130-173 (271)
231 2ras_A Transcriptional regulat 25.9 13 0.00044 28.4 -0.2 45 189-234 11-55 (212)
232 3itf_A Periplasmic adaptor pro 25.9 39 0.0013 27.5 2.6 18 183-200 116-133 (145)
233 2opa_A Probable tautomerase YW 25.8 87 0.003 20.0 3.9 35 187-235 12-46 (61)
234 3szt_A QCSR, quorum-sensing co 25.8 10 0.00035 31.6 -0.9 48 183-240 173-220 (237)
235 3e7q_A Transcriptional regulat 25.8 2.9 9.8E-05 31.7 -4.0 46 188-234 13-58 (215)
236 2d9a_A B-MYB, MYB-related prot 25.7 79 0.0027 21.0 3.8 23 180-202 5-27 (60)
237 2hxo_A Putative TETR-family tr 25.7 23 0.00078 29.0 1.2 50 180-234 10-60 (237)
238 3s8q_A R-M controller protein; 25.5 19 0.00063 24.4 0.5 20 214-233 28-47 (82)
239 3mf7_A CIS-3-chloroacrylic aci 25.4 68 0.0023 25.7 4.0 34 185-232 11-44 (149)
240 3lsj_A DEST; transcriptional r 25.3 16 0.00054 28.1 0.1 47 188-234 10-56 (220)
241 3t76_A VANU, transcriptional r 25.3 22 0.00075 25.9 0.9 43 181-227 33-82 (88)
242 3mb2_A 4-oxalocrotonate tautom 25.3 1E+02 0.0036 20.8 4.4 35 186-234 12-46 (72)
243 3a4r_A Nfatc2-interacting prot 25.2 48 0.0017 23.5 2.7 25 212-236 34-58 (79)
244 3vp5_A Transcriptional regulat 25.1 8.2 0.00028 29.7 -1.6 48 185-233 8-55 (189)
245 1otf_A 4-oxalocrotonate tautom 25.1 90 0.0031 19.9 3.9 36 186-235 11-46 (62)
246 3frq_A Repressor protein MPHR( 25.1 8 0.00027 29.3 -1.6 27 208-234 26-52 (195)
247 2zcx_A SCO7815, TETR-family tr 25.0 9.6 0.00033 30.6 -1.2 45 189-234 23-67 (231)
248 1yio_A Response regulatory pro 25.0 9.8 0.00034 29.4 -1.1 47 185-241 142-188 (208)
249 3vk0_A NHTF, transcriptional r 24.8 20 0.00068 26.3 0.6 17 208-224 61-77 (114)
250 3loc_A HTH-type transcriptiona 24.8 5.5 0.00019 30.2 -2.6 46 188-234 17-62 (212)
251 2d74_B Translation initiation 24.7 21 0.00071 29.4 0.8 15 82-96 123-137 (148)
252 3knw_A Putative transcriptiona 24.7 9.1 0.00031 29.0 -1.3 47 187-234 12-58 (212)
253 2hyj_A Putative TETR-family tr 24.6 12 0.00041 28.9 -0.7 45 188-233 11-55 (200)
254 3e7l_A Transcriptional regulat 24.6 24 0.0008 23.9 0.9 36 190-233 20-55 (63)
255 3qkx_A Uncharacterized HTH-typ 24.6 7.7 0.00026 28.7 -1.7 45 189-234 8-52 (188)
256 2w53_A Repressor, SMet; antibi 24.5 19 0.00066 27.8 0.5 28 207-234 28-55 (219)
257 2q24_A Putative TETR family tr 24.4 7.3 0.00025 29.6 -1.9 24 211-234 35-58 (194)
258 3f0c_A TETR-molecule A, transc 24.3 12 0.00042 28.4 -0.6 28 207-234 28-55 (216)
259 2elk_A SPCC24B10.08C protein; 24.3 47 0.0016 22.4 2.4 21 182-202 8-28 (58)
260 3f6w_A XRE-family like protein 24.0 20 0.00068 24.2 0.4 20 214-233 31-50 (83)
261 2guh_A Putative TETR-family tr 23.8 6.9 0.00024 31.0 -2.2 28 207-234 56-83 (214)
262 2g2k_A EIF-5, eukaryotic trans 23.6 21 0.00071 30.2 0.6 16 82-97 117-132 (170)
263 3i5g_B Myosin regulatory light 23.4 1.8E+02 0.006 22.0 5.9 41 183-223 7-48 (153)
264 2of7_A Putative TETR-family tr 23.4 10 0.00036 30.7 -1.3 46 188-234 47-92 (260)
265 1yoz_A Hypothetical protein AF 23.2 97 0.0033 24.7 4.3 32 189-220 77-109 (116)
266 3rd3_A Probable transcriptiona 23.1 7.7 0.00026 28.9 -2.0 46 188-234 9-54 (197)
267 3qq6_A HTH-type transcriptiona 23.0 24 0.0008 24.3 0.7 44 180-224 18-67 (78)
268 1wm3_A Ubiquitin-like protein 23.0 73 0.0025 21.9 3.3 28 210-237 25-52 (72)
269 3sjm_A Telomeric repeat-bindin 22.9 65 0.0022 22.4 3.0 23 180-202 8-30 (64)
270 1rfh_A RAS association (ralgds 22.6 23 0.00078 24.2 0.5 26 65-96 23-50 (59)
271 2qwt_A Transcriptional regulat 22.6 6.9 0.00024 30.1 -2.4 43 190-234 14-56 (196)
272 3aqt_A Bacterial regulatory pr 22.6 10 0.00034 30.5 -1.5 28 207-234 63-90 (245)
273 1or7_A Sigma-24, RNA polymeras 22.6 4.3 0.00015 31.4 -3.6 46 184-239 139-185 (194)
274 2jml_A DNA binding domain/tran 22.6 9.2 0.00032 27.0 -1.6 20 213-232 8-27 (81)
275 1faq_A RAF-1; transferase, ser 22.5 32 0.0011 22.2 1.2 27 66-99 16-44 (52)
276 1uiz_A MIF, macrophage migrati 22.4 1.2E+02 0.0041 22.1 4.6 37 185-235 67-103 (115)
277 3uj3_X DNA-invertase; helix-tu 22.2 19 0.00064 29.0 0.0 44 185-237 142-185 (193)
278 3dew_A Transcriptional regulat 22.2 12 0.00041 27.9 -1.1 28 207-234 25-52 (206)
279 1t33_A Putative transcriptiona 22.1 12 0.00042 28.7 -1.0 27 207-234 29-55 (224)
280 2hzq_A Apolipoprotein D, APO-D 22.1 72 0.0025 24.8 3.4 22 186-207 133-154 (174)
281 3c07_A Putative TETR-family tr 22.0 8.4 0.00029 32.1 -2.2 45 189-234 41-85 (273)
282 3fmy_A HTH-type transcriptiona 21.9 42 0.0014 22.7 1.8 40 184-234 9-48 (73)
283 2cob_A LCOR protein; MLR2, KIA 21.9 22 0.00074 26.3 0.3 53 178-238 5-58 (70)
284 3col_A Putative transcription 21.9 14 0.00047 27.4 -0.8 28 207-234 27-54 (196)
285 3ry0_A Putative tautomerase; o 21.7 1.2E+02 0.004 20.0 4.0 35 186-234 11-45 (65)
286 3zxw_B Ribulose bisphosphate c 21.6 54 0.0018 26.2 2.6 27 179-205 7-38 (118)
287 2e9h_A EIF-5, eukaryotic trans 21.6 20 0.0007 29.8 0.1 17 82-98 124-140 (157)
288 2xdn_A HTH-type transcriptiona 21.6 18 0.00062 27.7 -0.2 43 191-234 13-55 (210)
289 2jpf_A Hypothetical protein; a 21.5 8.6 0.00029 30.6 -2.1 7 227-233 54-60 (127)
290 1hfo_A Migration inhibitory fa 21.3 1.3E+02 0.0045 21.8 4.6 36 186-235 67-102 (113)
291 2g7l_A TETR-family transcripti 21.3 23 0.00079 29.2 0.4 49 180-234 13-63 (243)
292 3cw2_K Translation initiation 21.1 29 0.00099 28.2 0.9 15 82-96 122-136 (139)
293 1ntc_A Protein (nitrogen regul 21.0 28 0.00095 25.2 0.7 35 190-232 52-86 (91)
294 2ewt_A BLDD, putative DNA-bind 20.8 30 0.001 22.5 0.8 17 208-224 50-66 (71)
295 3bd1_A CRO protein; transcript 20.7 12 0.0004 25.6 -1.3 23 213-235 14-36 (79)
296 2pz9_A Putative regulatory pro 20.5 13 0.00044 29.2 -1.3 26 209-234 49-74 (226)
297 2os5_A Acemif; macrophage migr 20.4 1.4E+02 0.0048 22.0 4.6 36 186-235 68-103 (119)
298 3o22_A Prostaglandin-H2 D-isom 20.4 69 0.0023 24.5 2.9 22 185-206 126-147 (162)
299 1qgp_A Protein (double strande 20.3 13 0.00044 26.6 -1.2 43 185-231 10-52 (77)
300 1rp3_A RNA polymerase sigma fa 20.2 6.7 0.00023 31.1 -3.0 47 184-239 186-232 (239)
301 3bd9_A Heparan sulfate glucosa 20.2 1.2E+02 0.0042 25.3 4.7 34 179-223 243-276 (280)
302 1x57_A Endothelial differentia 20.2 28 0.00095 24.1 0.6 21 207-227 52-72 (91)
303 2d07_B Ubiquitin-like protein 20.1 98 0.0033 22.6 3.6 26 212-237 43-68 (93)
304 3b81_A Transcriptional regulat 20.1 11 0.00037 28.4 -1.7 46 188-234 10-55 (203)
305 3gj5_B Nuclear pore complex pr 20.0 33 0.0011 21.9 0.8 11 82-92 19-29 (34)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-21 Score=146.60 Aligned_cols=66 Identities=65% Similarity=1.161 Sum_probs=62.8
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|++|++++||+.+++|...+++||.+|||++.+|||||||+|+|+.+.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999763
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=2.1e-20 Score=139.66 Aligned_cols=65 Identities=66% Similarity=1.154 Sum_probs=62.3
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+||.||+||.+|++.|+.+++++|||.+++|...+++||.+|||+..+|||||||+|+|+.+.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999998764
No 3
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=114.31 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccc
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~ 238 (242)
...+||.||.||.||+..|+.|++.| ..+||++++++++.++||+.+|+||||||.|-..
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~---~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDV---GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 45689999999999999999977776 5899999999999999999999999999998643
No 4
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-16 Score=115.45 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=60.8
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...+||.||.||.+|++.|+.++++-+|..++++...+++||.++||+..+|+|||+|+|+++.|
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 45579999999999999999999998899999999999999999999999999999999998754
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-15 Score=110.42 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=57.2
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|+.+++. .++++...+++||.++||+..+|+|||+|+|+++.|+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLL----DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 3457999999999999999998877 6999999999999999999999999999999998775
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-15 Score=110.52 Aligned_cols=61 Identities=30% Similarity=0.510 Sum_probs=56.4
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...+||.||.||.+|++.|+.++++ .++++...+++||.++||+..+|+|||+|+|+++.|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAI----NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 3457999999999999999998887 799999999999999999999999999999998765
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=4.2e-14 Score=101.69 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA----NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 3557999999999999999998777 6999999999999999999999999999999999875
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-14 Score=100.95 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=57.5
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|+.+++. .++++...+++++.++||+...|+|||+|.|++..|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDA----NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 3567999999999999999997777 6999999999999999999999999999999999875
No 9
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=9.4e-14 Score=102.61 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=57.4
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+|+|||+|+|+++.|+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR----QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3557999999999999999997777 7999999999999999999999999999999998875
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.5e-14 Score=101.09 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3457999999999999999997777 7999999999999999999999999999999999875
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-14 Score=101.59 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=56.7
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQE----TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 3457999999999999999997777 7999999999999999999999999999999987654
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.9e-14 Score=102.23 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||.||.||.+|++.|+.+++. .++++...+++++.++||+...|+|||+|+|+++.|+
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEK----QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 3456999999999999999997777 6999999999999999999999999999999998875
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.39 E-value=5.1e-14 Score=98.66 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=52.0
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE----NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 36999999999999999997777 6999999999999999999999999999999998764
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=6.1e-14 Score=100.45 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=56.7
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDI----NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 3457999999999999999997777 6999999999999999999999999999999988764
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=7.6e-14 Score=102.66 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=56.3
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...||.||.||.+|++.|+.++++ .++++...+++++.++||+...|+|||+|.|+++.|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK----TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 457999999999999999997777 6999999999999999999999999999999987654
No 16
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.37 E-value=1.3e-13 Score=97.94 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=56.2
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++..|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA----NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 36899999999999999997777 6999999999999999999999999999999999876
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.37 E-value=9.1e-14 Score=97.65 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++..|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK----QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 46899999999999999997777 6999999999999999999999999999999998875
No 18
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=6.3e-14 Score=103.31 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=56.1
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
....||.||.||.+|++.|+.++++ .++++...+++++.++||+...|+|||+|.|+++.|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 3457999999999999999998877 789999999999999999999999999999998765
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=1.5e-13 Score=98.85 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=55.7
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
....||.||.||.+|++.|+.++++ .++++...+++++.++||+...|+|||+|.|+++.+
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr 64 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFET----QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 64 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCC
Confidence 3457899999999999999997777 799999999999999999999999999999998754
No 20
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=3.7e-13 Score=96.89 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=56.6
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+||.||.||.+|++.|+.+++. .++++...+++++..+||+...|+|||+|+|+++.|+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK----THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 457899999999999999997777 6899999999999999999999999999999998875
No 21
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.34 E-value=1.2e-13 Score=97.47 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=52.9
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
+.||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF----NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 46899999999999999997777 699999999999999999999999999999998765
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=1.8e-13 Score=94.63 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=52.9
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ----KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 689999999999999997777 699999999999999999999999999999988653
No 23
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=97.79 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..++.||+||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCR----NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH----SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34677999999999999997777 6999999999999999999999999999999998875
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.31 E-value=2.6e-13 Score=100.57 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=52.1
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|++++|+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 446999999999999999997777 6899999999999999999999999999999998775
No 25
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.31 E-value=2.9e-13 Score=92.73 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccc
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~ 238 (242)
++||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|+|++.
T Consensus 1 g~rr~Rt~~t~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 1 GRRKPRVLFSQAQVYELERRFKQ----QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 36899999999999999997776 6899999999999999999999999999999875
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.31 E-value=7.1e-13 Score=96.30 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYAT----NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 346999999999999999997777 6999999999999999999999999999999998764
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.31 E-value=2.4e-13 Score=94.96 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=53.3
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK----ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 789999999999999997777 6899999999999999999999999999999987654
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.31 E-value=1.3e-13 Score=99.02 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 59 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH----CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhH
Confidence 6899999999999999997777 689999999999999999999999999999998755
No 29
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.30 E-value=4.6e-13 Score=98.04 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=55.2
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|+|++.+|
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQ----QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 456899999999999999997777 689999999999999999999999999999998754
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-13 Score=95.84 Aligned_cols=59 Identities=15% Similarity=0.326 Sum_probs=54.9
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|++..|+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CcCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 3799999999999999997776 7999999999999999999999999999999998765
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.28 E-value=5.1e-13 Score=95.71 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ----QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 6899999999999999997777 6899999999999999999999999999999987653
No 32
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.28 E-value=4.7e-13 Score=101.78 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=55.6
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+||.||.||.+|++.|+.++++ .++++...+++++.++||+...+||||+|.|+++.|
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 74 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHK----QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhh
Confidence 457999999999999999997777 699999999999999999999999999999998765
No 33
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=9.1e-13 Score=92.85 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=55.0
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
+.+|.||.||.+|++.|+.++.. ....++|+....+++|.++||+...|+|||+|.|+++.|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-cccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45899999999999999996621 1127899999999999999999999999999999998874
No 34
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.27 E-value=7.9e-13 Score=96.76 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=55.2
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999997777 699999999999999999999999999999998754
No 35
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.27 E-value=4.2e-13 Score=98.90 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=55.1
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER----TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 446899999999999999997777 689999999999999999999999999999998765
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.27 E-value=4.3e-13 Score=100.38 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...||.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|+|+++.|+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 346999999999999999998776 7999999999999999999999999999999998775
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.27 E-value=3.8e-13 Score=96.36 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
+||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHH
Confidence 5899999999999999997777 689999999999999999999999999999998754
No 38
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.27 E-value=1e-13 Score=99.12 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=54.9
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
++||.||.||.+|++.|+.+++. .++++...+++++.++||+...++|||+|.|+++.|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 60 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHH
Confidence 57999999999999999997777 789999999999999999999999999999998765
No 39
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=94.47 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=55.0
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.++.||.||.+|++.|+.++++ .++++...+++++.++||+...+||||+|+|+++.|+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK----NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4889999999999999997777 6899999999999999999999999999999998874
No 40
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.25 E-value=1.3e-12 Score=99.57 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+|.||.||.+|++.|+.++++ .++++...+++++.++||+...|||||+|+|++++|.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 446889999999999999997777 6899999999999999999999999999999998875
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.24 E-value=1.2e-12 Score=91.23 Aligned_cols=57 Identities=12% Similarity=0.308 Sum_probs=46.4
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccc
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~ 238 (242)
.+||.||.||.+|++.|+.+++. .++++...++++|.++||+...++|||+|.|+++
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp --------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 46899999999999999997777 5999999999999999999999999999999875
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.24 E-value=1.2e-12 Score=98.35 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred CcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 181 RFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 181 R~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
+.|++||.+|++.|+..+++ .++|+..++++++.++||++.+|||||+|+|.+++|.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~----~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ----CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 45778999999999997776 6999999999999999999999999999999987653
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.23 E-value=1.7e-12 Score=90.65 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=48.8
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.||.||.+|++.|+.++++ .++++...+++++.++||+...++|||+|.|+++.|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR----THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3899999999999997777 6899999999999999999999999999999998875
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=9.8e-13 Score=99.85 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=55.8
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------CCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTG---------------VKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiG---------------v~r~V~KVWmhNnK~~~gk 240 (242)
..+||.||.||.+|++.|+.++++ .++++...+++++.++| |+...++|||+|+|++..+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998887 79999999999999999 9999999999999998754
No 45
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.22 E-value=2.2e-12 Score=106.42 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=53.8
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+||.||.||.+|++.|+.++++ .++++...+++++.++||+..++||||+|+|++++|+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFME----NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 457999999999999999998887 7999999999999999999999999999999999886
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=7.3e-13 Score=100.92 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...||.||.||.+|++.|+.++++ .++++...+++++.++||+...+||||+|+|+++.|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 91 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 91 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhH
Confidence 457999999999999999997777 689999999999999999999999999999998765
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.4e-12 Score=93.33 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=52.6
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+.|++||.+|++.|+.++++ .++++...+++++.++||+...|+|||+|+|+++.|+
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ----NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCCccCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 455778999999999998887 6999999999999999999999999999999988654
No 48
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.20 E-value=4.3e-12 Score=103.60 Aligned_cols=62 Identities=15% Similarity=0.329 Sum_probs=54.5
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+++|||+|+|++++|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGE----HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3457889999999999999997777 7999999999999999999999999999999999886
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.18 E-value=5.5e-12 Score=91.08 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=55.6
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...||.||.||.+|++.|+.+++. -+..++++....+++|.++||+...|+|||+|.|+++.|+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQ-HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 457899999999999999996653 1335899999999999999999999999999999987654
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.17 E-value=2.4e-12 Score=93.02 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=53.7
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.||.||.||.+|++.|+.++.. ....++|+....+++|.++||+...|+|||+|.|+++.|+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 3899999999999999997621 1237899999999999999999999999999999987553
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.17 E-value=2.2e-12 Score=95.81 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.||.||.||.+|++.|+.++.. ....++++....++|+.++||+...|+|||+|.|.++.|+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~-h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHT-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 3799999999999999997721 1237899999999999999999999999999999987654
No 52
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.16 E-value=7.8e-12 Score=101.93 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=56.5
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..+++|||+|+|++++|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEK----NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567889999999999999997777 799999999999999999999999999999999876
No 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.15 E-value=5.3e-12 Score=105.11 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...+||.||.||.+|++.|+.++++ .++++...+++++.++||+..++||||+|+|++++|+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLK----CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp ----------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred cccCCCCceeccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 3457899999999999999998887 7999999999999999999999999999999998875
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=92.55 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...+||.||.||.+|++.|++++.. -+..++++..+.++|+.++||+...|+|||+|.|.++.|
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcH
Confidence 3457999999999999999995543 234589999999999999999999999999999988754
No 55
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=5.3e-12 Score=91.53 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
++-||.||.+|++.|+.++++. .++++...+++++.++||+...++|||+|+|+++.|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk 60 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5779999999999999977631 489999999999999999999999999999988754
No 56
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.12 E-value=1.5e-11 Score=100.87 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+||.||.||.+|++.|+.+++. .++++...+++++.++||+..+++|||+|+|.+.+|.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE----NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 456999999999999999997777 5999999999999999999999999999999998875
No 57
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=6.7e-12 Score=90.57 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.+.||.||.+|++.|+.++++. .++++...+++++.++||+...++|||+|+|+++.|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk 59 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhh
Confidence 4678999999999999977631 489999999999999999999999999999998754
No 58
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.10 E-value=6.5e-12 Score=86.90 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=48.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
|.||.+|++.|+..+++ .++++...+++++.++||+...+||||+|+|++++|+
T Consensus 2 T~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR----QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 78999999999997777 6999999999999999999999999999999988664
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.09 E-value=2.9e-11 Score=90.25 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.++|.||.||.+|++.|+.+++. .+..++++....+++|.++||+...++|||+|.|+++++
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 35667999999999999995543 445589999999999999999999999999999998753
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-11 Score=97.53 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHh---------------------CCCCceEEEecccc
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT---------------------GVKRHVLKVWMHNN 234 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~ei---------------------Gv~r~V~KVWmhNn 234 (242)
+..+||.||+||.+|+..|+.++++ .++||...+++++.++ +|+..+++|||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~----~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 4567999999999999999998888 7899999999999999 79999999999999
Q ss_pred ccccCC
Q 026161 235 KHTLGK 240 (242)
Q Consensus 235 K~~~gk 240 (242)
|++.++
T Consensus 79 R~k~kr 84 (102)
T 2da6_A 79 RKEEAF 84 (102)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.07 E-value=2.1e-11 Score=94.81 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=51.6
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHH------------------hC---CCCceEEEeccccc
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCND------------------TG---VKRHVLKVWMHNNK 235 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~e------------------iG---v~r~V~KVWmhNnK 235 (242)
..+||.||.||.+|++.|+.++++ .+++|....++++.+ +| |+...++|||+|+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 346899999999999999998877 799999999999999 88 99999999999999
Q ss_pred cccCCC
Q 026161 236 HTLGKK 241 (242)
Q Consensus 236 ~~~gkk 241 (242)
++.++|
T Consensus 83 ~k~k~k 88 (99)
T 1lfb_A 83 KEEAFR 88 (99)
T ss_dssp HTTSCC
T ss_pred HHHHHh
Confidence 988765
No 62
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.04 E-value=2.1e-11 Score=100.29 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=55.4
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+||.||.||.+|+..|+.++++ .++++...+++++..+||+..++||||+|+|++++|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK----SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 467999999999999999997665 689999999999999999999999999999999876
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.03 E-value=3.1e-11 Score=83.97 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=50.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
||.||.+|++.|+.++++ .+..++|+...++++|.++||+...++|||+|.|++..|
T Consensus 2 r~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 799999999999995554 233589999999999999999999999999999998765
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.02 E-value=5e-11 Score=91.44 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=51.1
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
+++| .||.+|++.|+..++. .++++...+++++.++||+...|||||+|+|+++.|+
T Consensus 13 ~k~k-~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 13 QKFK-EKTAEQLRVLQASFLN----SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCC-CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhhc-cCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 3445 8999999999997666 6999999999999999999999999999999988764
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.02 E-value=7.6e-11 Score=87.59 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
+++-||.||.+|++.|+.+++. .+..++++....++++.++||+...|+|||+|.|+++.+.
T Consensus 2 K~krr~rft~~q~~~Le~~f~~-h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH-TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 4556777999999999995553 3345899999999999999999999999999999998764
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.7e-11 Score=89.78 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=49.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+||.+|++.|+.++++ .++++...+++++.++||+...|||||+|+|+++.++
T Consensus 18 k~~t~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK----SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 34999999999997777 6999999999999999999999999999999987653
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.90 E-value=1.3e-10 Score=84.97 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCcCccCCHHHHHHHHHHH-HHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 180 KRFRTKFTPEQKDRMLELA-EKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fA-eklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.+-|+.||.+|++.|+.++ +. .++++...+++++.++||+.+.+||||||+|+++.+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4567778899999999977 76 689999999999999999999999999999999875
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=4.6e-10 Score=80.53 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=49.5
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.+..++.+|++.|+.++++ .++++...+++++.++||+.+++||||+|+|++..+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL----NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3456789999999997776 799999999999999999999999999999998765
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=80.00 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..|.+|++.|+.++++ .++++...+++++.++||+.+.+||||+|+|++++|+
T Consensus 10 ~~t~~ql~~LE~~F~~----~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH----QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 5789999999997777 6899999999999999999999999999999999875
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.71 E-value=1.3e-09 Score=80.33 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
|-|.+|++.|+..+++ .++++..++++++..+||++.+|||||+|+|.++.|
T Consensus 10 ~~~~~Ql~~LE~~F~~----~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ----SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp -CCHHHHHHHHHHHHG----GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 4478999999997776 699999999999999999999999999999988753
No 71
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.8e-09 Score=79.79 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHT 237 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~ 237 (242)
.+|+..|+++++. ..+|+.+++++++..+||+++|+||||+|+|+.
T Consensus 14 k~ql~~Lk~yF~~----n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM----NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4799999997666 699999999999999999999999999999973
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.68 E-value=1.4e-09 Score=93.49 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------------CCCceEEEeccccc
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTG---------------------VKRHVLKVWMHNNK 235 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiG---------------------v~r~V~KVWmhNnK 235 (242)
..+||.||+||.+|++.|..++++ .++++...+++++.+++ |+...++|||+|+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~----~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHH----HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 456999999999999999997777 68999999999999999 99999999999999
Q ss_pred cccCCC
Q 026161 236 HTLGKK 241 (242)
Q Consensus 236 ~~~gkk 241 (242)
.+.+.|
T Consensus 189 ~~~k~~ 194 (194)
T 1ic8_A 189 KEEAFR 194 (194)
T ss_dssp HHCC--
T ss_pred hhhhcC
Confidence 988764
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.66 E-value=3.2e-09 Score=76.37 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=47.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+||.+|++.|++++.. -+..++++..+.++++.++||+...++|||+|.|.++.|+
T Consensus 3 g~f~~~~~~~L~~~f~~-h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQ-HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 47999999999996652 2447899999999999999999999999999999988764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.57 E-value=1.4e-08 Score=89.51 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCCCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---------------------CCCceEEEecccc
Q 026161 176 GGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTG---------------------VKRHVLKVWMHNN 234 (242)
Q Consensus 176 ~~~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiG---------------------v~r~V~KVWmhNn 234 (242)
...+||.||+||.+|++.|..++++ .++||...+++++.+++ |+...++|||+|+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~----~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 3457999999999999999998887 79999999999999987 7888899999999
Q ss_pred ccccC
Q 026161 235 KHTLG 239 (242)
Q Consensus 235 K~~~g 239 (242)
|...+
T Consensus 215 R~~~~ 219 (221)
T 2h8r_A 215 RKEEA 219 (221)
T ss_dssp HTTCC
T ss_pred hhhhh
Confidence 98754
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.45 E-value=2.8e-08 Score=87.57 Aligned_cols=57 Identities=11% Similarity=0.274 Sum_probs=52.8
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.+|.|+.|+.+|++.|+..+++ .++++...+++++.++||+.+.+||||+|+|.|++
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~----~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRR----KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4799999999999999997666 69999999999999999999999999999998864
No 76
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.45 E-value=2e-08 Score=73.17 Aligned_cols=50 Identities=6% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
++|++.|+.++.+. .++++...++++|.++||+.+.+||||||+|++.++
T Consensus 9 ~~~~~~LE~~F~~~---~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAI---TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTT---CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999977431 467999999999999999999999999999998864
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.81 E-value=2.5e-06 Score=65.83 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=47.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
-.|+.+|++.|++++.. -+..+++++++.++|+.++||+..-|++||+|.|.+.+|
T Consensus 10 ~~l~~~~~~iL~~W~~~-h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYE-HRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHH-TSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 45899999999995543 145689999999999999999999999999999988754
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=95.90 E-value=0.00058 Score=45.15 Aligned_cols=16 Identities=25% Similarity=0.715 Sum_probs=14.2
Q ss_pred eEEEeccccccccCCC
Q 026161 226 VLKVWMHNNKHTLGKK 241 (242)
Q Consensus 226 V~KVWmhNnK~~~gkk 241 (242)
-+||||||+|+|++|+
T Consensus 2 QVkIWFQNRRaK~Kk~ 17 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKR 17 (37)
T ss_dssp CTTTTTTCSHHHHTSS
T ss_pred CceeccHHHHHHHHHH
Confidence 3789999999999886
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=93.34 E-value=0.041 Score=40.04 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=36.5
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
+|+.|.+||.|+|+......+. |. .+.++|.++||++.+|.-|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~-g~--------s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD-GE--------SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH-TC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567889999999887765543 32 3788999999999999999854
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=91.59 E-value=0.044 Score=37.14 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=33.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
|.+||+|+|.++.++.+. |. .....+.++|.+.||++.+|.-|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g~----s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DN----DCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CT----TTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CC----CcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 568999999988655443 21 10112789999999999999999764
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.27 E-value=0.077 Score=38.64 Aligned_cols=45 Identities=31% Similarity=0.500 Sum_probs=34.9
Q ss_pred CccCCHHHHHHHHHHHHHh-CCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 183 RTKFTPEQKDRMLELAEKL-GWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 183 RTkFT~EQkekM~~fAekl-GWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
|.+||.|+|..+......- | ..+.++|.++||++.+|.-|...-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4689999998877655332 2 2488999999999999999986443
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=89.36 E-value=0.088 Score=39.81 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=37.1
Q ss_pred CcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 181 RFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 181 R~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
+.|+.||.|||..+...++.-|- ..+.++|.+.||++.+|.-|+.+..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~-------~~~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPD-------LRKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTT-------SCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCC-------CcHHHHHHHhCCCHHHHHHHHhchh
Confidence 35889999999999887755221 1244788999999999999987754
No 83
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=88.75 E-value=0.086 Score=36.92 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=38.7
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
|+.+|+++.+.+..|+++|-...... ..++|+..+||++.++.-|..+.+
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 78899999988888888764322222 567999999999999988887654
No 84
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=88.27 E-value=0.17 Score=37.32 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
|.+||+|+|..+...+..-|+.. ......+.++|.++||++.+|.-|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~-~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEY-DSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccccc-ccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 45899999998777554322100 011247899999999999999999865
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=88.13 E-value=0.17 Score=30.88 Aligned_cols=43 Identities=7% Similarity=0.253 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.+++.++++.+..+... |+ .+.++|..+||++.+|+-|++.-+
T Consensus 4 ~~l~~~~~~~i~~~~~~-g~--------s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL-NV--------SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT-TC--------CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 46899998877665432 33 377899999999999999997654
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=86.04 E-value=0.17 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
+||.+|++.+..+.+. |+ .+.++|.++||++.+|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~-g~--------s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK-GH--------PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT-TC--------CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc-CC--------CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 6888888877776443 42 478999999999999999987544
No 87
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=84.76 E-value=0.084 Score=44.05 Aligned_cols=53 Identities=21% Similarity=0.421 Sum_probs=39.7
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCC---HHHHHHHHHHhCCCCceEEEeccccc
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHD---EEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d---~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
+..|.+||.|+|+....++++ + +..++ .-.+.++|+++||++.+|--|....+
T Consensus 18 ~~~~r~yt~EfK~aAv~l~~~-~--~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p 73 (155)
T 2ao9_A 18 DELKQKLTAKQIQAAYLLVEN-E--LMESNNEEKRTQDEMANELGINRTTLWEWRTKNQ 73 (155)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH-H--HCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCH
T ss_pred hHhhhhcCHHHHHHHHHHHHc-c--ccccccccCCCHHHHHHHhCCCHHHHHHHHHcCc
Confidence 445777999999998888765 1 11222 23789999999999999999987543
No 88
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=83.94 E-value=0.09 Score=41.75 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=34.4
Q ss_pred CCCcC-ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCC-CCceEEEecccc
Q 026161 179 RKRFR-TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGV-KRHVLKVWMHNN 234 (242)
Q Consensus 179 ~KR~R-TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv-~r~V~KVWmhNn 234 (242)
+|+-| |+||+|.-+++.+.... ...+.++|...|| ++.+|--|++.+
T Consensus 5 ~k~GRPtk~t~e~~e~I~~~i~~---------G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 5 PKAGRPSDYMPEVADDICSLLSS---------GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp -----CCSCCTTHHHHHHHHHHT---------TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC---------CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 35445 89999988887775443 2458899999999 899999999765
No 89
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=80.99 E-value=0.42 Score=37.75 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=36.2
Q ss_pred CCcCccCCHHHHHHHHHHH-HHhCCccCCCCH-HHHHHHHHHh--CCCCceEEEecccc
Q 026161 180 KRFRTKFTPEQKDRMLELA-EKLGWRIQKHDE-EVVQQFCNDT--GVKRHVLKVWMHNN 234 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fA-eklGWRiqk~d~-~~ve~fc~ei--Gv~r~V~KVWmhNn 234 (242)
||.|+.+|.+||.+|.+++ +. ....-. ++.+-|-.+. ||++.+|.-|+.|.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~----~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL----QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS----SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 7899999999999999999 43 122222 2333233367 89999998888663
No 90
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=78.66 E-value=0.9 Score=35.46 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKH 236 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~ 236 (242)
+++|.|++.++..+.+ -|| .+.++|.++||++.+|.-|+...+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4799999999888764 354 3678899999999999999987543
No 91
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=78.48 E-value=0.83 Score=33.06 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++|.|++.++..+.. -||. +.++|..+||++.+|.-|+...
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s--------~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIR--------PCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999888764 4653 5788999999999999998763
No 92
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=77.23 E-value=1.1 Score=33.47 Aligned_cols=44 Identities=9% Similarity=0.298 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKH 236 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~ 236 (242)
.++|.+++..+..+.+ .||. +.++|..+||++.++.-|+...+.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~s--------~~~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNVS--------LHEMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHSGGG
T ss_pred ccCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHcccc
Confidence 6799999999888764 4653 578899999999999999987543
No 93
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=76.80 E-value=0.33 Score=39.83 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++|.+|++.|..+.++|--.+.... -..++||+.+||++.++.-|..+.+
T Consensus 5 ~~lt~~~~~~~~~~~~~l~~~r~~~g-~t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELG-LSQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTT-CCSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 46889999877777666432222221 1467899999999999999987754
No 94
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=76.44 E-value=0.79 Score=35.21 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+||.|++.++..... -||. +.++|.++||++.+|.-|+...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s--------~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVR--------PCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999888774 4653 6788999999999999999754
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=75.32 E-value=0.34 Score=34.72 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=40.3
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.-.++|+.|++.+.-+++- ...+++|+++||+..+++.++++-+.+++.+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~g----------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQG----------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTT----------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HHccCCHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3456999999998776432 2577999999999999999999988888764
No 96
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=70.99 E-value=0.57 Score=34.42 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.++|+.|++.+.-+++- + ..++++..+||+..+++.++++-+.+++.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L--------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46899999998876433 2 357899999999999999999988887654
No 97
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=70.12 E-value=0.59 Score=32.37 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
+|+||++.+..+.+++--.... ..-..++|+..+||++.++.-|..+.+
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~-~gltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNE-LGLSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 5777777777666653111100 001356788888888888888876543
No 98
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=69.32 E-value=0.78 Score=36.57 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 42 ~~~r~~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 42 AERLTRILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCH
Confidence 44555655533332111 14455679999999999999998888763
No 99
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=67.60 E-value=0.8 Score=34.56 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=39.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+||+.|++.|.-+++ |+ ..++++.++||+..+++.++++-+.+++-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45799999999877764 33 34889999999999999999988877764
No 100
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.17 E-value=0.56 Score=31.64 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=38.6
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.-..+|+.|++.+.-+++. + ..+++|.++||+..+++.++++-+.+++.
T Consensus 8 ~~~~L~~~e~~il~~~~~g--~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQD--K--------TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHHTTT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3456999999988776432 2 56789999999999999999887777654
No 101
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=65.93 E-value=2.8 Score=29.22 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCceEEEecccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++|+..+||++.++.-|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4778888888888888887764
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=65.40 E-value=0.52 Score=34.02 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=39.3
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
=..+|+.|++.+.-+++- + ..++++..+||+..+++.++++-+.+++.+
T Consensus 27 l~~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKG--Y--------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGGCCSHHHHHHHHHHTT--C--------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 357999999998776443 2 345789999999999999999998888754
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.09 E-value=0.52 Score=32.40 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=38.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+|+.|++.+.-+++ |+ ..+++++.+||+..+++.++++-+.+++.+
T Consensus 15 ~~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 15 QTLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4588889988776532 22 356899999999999999999988888754
No 104
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=63.90 E-value=1.2 Score=34.75 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=31.6
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++|.|..=..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 18 ~~~~R~~r~~~~r~~Il~aa~~lf~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 18 YFQGHMAQNPERRAALVNAAIEVLAR-EGARGLTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp ---------CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred hhcccccccHHHHHHHHHHHHHHHHH-hChhhccHHHHHHHcCCCcchHHHhCCCH
Confidence 34444322345556665544443222 24456689999999999999998888763
No 105
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=63.74 E-value=10 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhC
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklG 202 (242)
.+++.|..||+|.-+.|.++.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4578889999999999999999987
No 106
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=63.35 E-value=1.5 Score=33.12 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=33.7
Q ss_pred CcCccCC-HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 181 RFRTKFT-PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 181 R~RTkFT-~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+.|.+.+ ++-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 8 ~~r~r~~~~~~r~~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 8 RGRPAVPDAVVRESIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 3344435 56677766644443111 24455679999999999999998888763
No 107
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=59.66 E-value=1.1 Score=34.27 Aligned_cols=47 Identities=6% Similarity=0.233 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++++-|.+|=++ +.-+.-.++++|++.||++.+|--+|.|.
T Consensus 29 ~~~~r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp -CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccchHHHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 344456665544443111 23455679999999999999998888764
No 108
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=58.84 E-value=2.6 Score=32.65 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
..+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 28 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 74 (212)
T 2np3_A 28 ETRTREAILTAARVCFAE-RGFDATSLRRIAETAGVDQSLVHHFYGTK 74 (212)
T ss_dssp -------CHHHHHHHC----------------------------CCC-
T ss_pred cHHHHHHHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHhCCH
Confidence 445566666655554332 34566789999999999999999999664
No 109
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=58.10 E-value=6.7 Score=27.36 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=32.3
Q ss_pred CccCCHHHHHHHHHHHHHhC-CccCCCCHHHHHHHHHHhCCCCceEEEe
Q 026161 183 RTKFTPEQKDRMLELAEKLG-WRIQKHDEEVVQQFCNDTGVKRHVLKVW 230 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklG-WRiqk~d~~~ve~fc~eiGv~r~V~KVW 230 (242)
||.||+|.=+.|.+|..+.. .-..-.-..+-++|+++ -+++++.|-|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-~~~~HtwqSw 49 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-SLTQHSWQSL 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-CSSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-HCCCCCHHHH
Confidence 89999999999999887730 00111234677888772 3688887766
No 110
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=56.66 E-value=12 Score=27.76 Aligned_cols=36 Identities=11% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
-|.|||+++- ++ +-+..|+-||.+...+.||++--+
T Consensus 11 RT~EQK~~lI---~~-----------VT~a~~eslgap~esVrVlItE~p 46 (70)
T 3ej9_B 11 LSVARKQQLI---RD-----------VIDVTNKSIGSDPKIINVLLVEHA 46 (70)
T ss_dssp CCHHHHHHHH---HH-----------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CCHHHHHHHH---HH-----------HHHHHHHHcCCChHHEEEEeeeCC
Confidence 3789998854 33 678889999999999999998644
No 111
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=55.73 E-value=3.7 Score=26.54 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCCceEEEecccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++|+..+||++.++.-|.++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 3556666666666666666543
No 112
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.47 E-value=0.59 Score=33.69 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=36.2
Q ss_pred ccCCHHHHHHHHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLE-LAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~-fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++++.|++.+.- |.+- ...+++|..+||+..+++++++.-+.++.
T Consensus 36 ~~L~~~~r~vl~l~~~~g----------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 36 AQLSAEHRAVIQRSYYRG----------WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp HTSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3588889988766 4333 24789999999999999999998877654
No 113
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.60 E-value=4.1 Score=26.64 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++|+..+||++.++.-|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35667777777777766666543
No 114
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.73 E-value=2.3 Score=35.93 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=41.4
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
...++++.|++.+.-+++- . ..++.+..+||+..++|+.+++-+.+++++
T Consensus 194 ~~~~L~~~erevl~L~~~G--~--------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 194 HRNILSEREKEILRCIRKG--L--------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp HTTSSCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHccCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3467999999997776433 2 578899999999999999999999988764
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.47 E-value=1.4 Score=29.95 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
++++.|++.+.-.+ |+ ..-+....++++..+||++.+++.+++.-+.++++
T Consensus 5 ~L~~~er~il~l~~---~l--~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRF---GI--DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHT---TT--TSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHH---cc--CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57888888876644 10 00122357889999999999999999988877765
No 116
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.31 E-value=2.2 Score=33.12 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|-..|.|.
T Consensus 26 G~~~~s~~~IA~~AGvs~gtlY~~F~sK 53 (203)
T 2np5_A 26 GLEGASVREVAKRAGVSIGAVQHHFSTK 53 (203)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ChhhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 4556689999999999999998888763
No 117
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=51.05 E-value=4.8 Score=30.35 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 15 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 15 SKAAARIRAAAIEVFAA-KGYGATTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp CHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCcChhhhcCCCH
Confidence 34455555533332111 13445679999999999999999888764
No 118
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=50.98 E-value=22 Score=23.79 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+|.|||++|. +. +.+.++..+|+++..+-|.++-+
T Consensus 9 grt~eqK~~L~---~~-----------it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 9 KLDVGKKREFV---ER-----------LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCCHHHHHHHH---HH-----------HHHHHHHHHTCCTTSCEEEEECC
T ss_pred CCCHHHHHHHH---HH-----------HHHHHHHHhCcCcceEEEEEEEe
Confidence 36899997754 33 56678888999999988888755
No 119
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=50.61 E-value=3.3 Score=31.67 Aligned_cols=49 Identities=8% Similarity=0.245 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
...++-++++.+-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK 57 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFADK 57 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCSSH
T ss_pred CChHHHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcCCH
Confidence 34677778877755554222 24455689999999999999998888774
No 120
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.36 E-value=2.2 Score=31.30 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
--.||..|++.+.-+++ |+ ..++++.++||+.++++..+.+-+.|++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF--------TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 34699999999888773 43 36889999999999999999988877764
No 121
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.30 E-value=6.2 Score=29.16 Aligned_cols=45 Identities=4% Similarity=0.071 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC--CCCceEEEecccccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTG--VKRHVLKVWMHNNKH 236 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiG--v~r~V~KVWmhNnK~ 236 (242)
.++|+++++.+.++.+.-.|. .++++.++| |+..+|.-|++.+.-
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~s--------~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCKT--------ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCCC--------HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhCCCCC--------HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 468999998888875543342 456777778 788888888876644
No 122
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=49.86 E-value=3.9 Score=31.41 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 14 ~~r~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 14 NIRDTIIERAAAMFAR-QGYSETSIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp THHHHHHHHHHHHHHH-TCTTTSCHHHHHHHTTCCGGGGTTTCSCH
T ss_pred hHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcCeeeeeeCCH
Confidence 4455555533333111 24456689999999999999998888763
No 123
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=49.84 E-value=5.2 Score=25.94 Aligned_cols=23 Identities=4% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++|+..+||++.++.-|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35667777777777666665543
No 124
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.35 E-value=2.7 Score=32.65 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=|+- . +...++++|++.||++.+|-.+|.|.
T Consensus 20 ~~r~~Il~aA~~lf~~~-G-~~~s~~~IA~~aGvs~~tlY~~F~sK 63 (215)
T 2hku_A 20 QTRDALFTAATELFLEH-G-EGVPITQICAAAGAHPNQVTYYYGSK 63 (215)
T ss_dssp CHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHh-C-CCcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34555555443332222 5 77889999999999999998888664
No 125
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=48.86 E-value=2.3 Score=35.17 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=39.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...||+.|++.+.-+++- + ..++++..+||+.+++|..++|-+.|++-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g------~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG------K----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT------C----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcC------C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 567999999998776643 2 35788999999999999999998888764
No 126
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=47.99 E-value=3 Score=31.37 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=33.8
Q ss_pred CccCCHH-HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 183 RTKFTPE-QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 183 RTkFT~E-QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
|+.-..+ -++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 10 ~~~~~~~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 10 RTRLSPLKRKQQLMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcCCH
Confidence 3333344 456666655554222 24455679999999999999998888773
No 127
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=47.67 E-value=8.6 Score=28.63 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 29 G~~~~t~~~IA~~agvs~~t~Y~~F~sK 56 (199)
T 3on2_A 29 GVDGLSLRQLAREAGVSHAAPSKHFRDR 56 (199)
T ss_dssp CGGGCCHHHHHHHTC-----CCCSSSSH
T ss_pred ChhhhhHHHHHHHhCCChHHHHHHhCCH
Confidence 4445679999999999999999999874
No 128
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=47.43 E-value=6.9 Score=30.88 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 34 ~~~r~~Il~AA~~lf~~-~G~~~~s~~~IA~~AGvs~~tlY~~F~sK 79 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVR-DGVRAVRHRAVAAEAQVPLSATTYYFKDI 79 (237)
T ss_dssp -CHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTTTC-----CH
T ss_pred HHHHHHHHHHHHHHHHh-cChhhcCHHHHHHHhCCChhHHHHHcCCH
Confidence 34455555533332111 14455679999999999999999998764
No 129
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=47.04 E-value=3 Score=32.00 Aligned_cols=46 Identities=9% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.++=++ +.-+...++++|++.||++.+|--.|.|.
T Consensus 16 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIE-RPYAQVSIREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHHHHHHHHHT-SCCSCCCHHHHHHHHTSCTHHHHHHHSSH
T ss_pred hHHHHHHHHHHHHHHHH-CCCCcCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 45677777766665222 24445679999999999999998888664
No 130
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.03 E-value=5.9 Score=26.19 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHHhCCCCceEEEecc
Q 026161 214 QQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 214 e~fc~eiGv~r~V~KVWmh 232 (242)
++|++.+||++.++.-|..
T Consensus 22 ~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 22 AALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 3444444444444444443
No 131
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=46.77 E-value=2.7 Score=28.93 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
++++|..+||++.+|.-|..+.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 57899999999999999998765
No 132
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.32 E-value=20 Score=28.70 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=29.6
Q ss_pred CHHHHHH-HHHHHHHhCCcc----CCCCHHHHHHHHHHhCC
Q 026161 187 TPEQKDR-MLELAEKLGWRI----QKHDEEVVQQFCNDTGV 222 (242)
Q Consensus 187 T~EQkek-M~~fAeklGWRi----qk~d~~~ve~fc~eiGv 222 (242)
+..|+-+ |+++..+|||++ |.+|++.+++|-+.|--
T Consensus 59 ndkqllkemlelisklgykvflllqdqdeneleefkrkies 99 (134)
T 2lci_A 59 NDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIES 99 (134)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHh
Confidence 3456544 999999999994 89999999999988743
No 133
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.80 E-value=1 Score=29.94 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHH-HHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 184 TKFTPEQKDRMLEL-AEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 184 TkFT~EQkekM~~f-AeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
.++++.|++.+.-+ .+. ...+++|..+||++.+++.|.+.-+.++.+
T Consensus 14 ~~L~~~~r~il~l~~~~g----------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----------LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35888999887663 332 246789999999999999999887776543
No 134
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=45.15 E-value=16 Score=29.67 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQK 207 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk 207 (242)
-.||+||+.++..--++.||.|.+
T Consensus 132 ~~fseeql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 132 LSFTDEDVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCC
Confidence 389999999999988999999865
No 135
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=45.03 E-value=3.8 Score=30.87 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++.++++.+-|.+|=.+ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGSK 58 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCCH
Confidence 33455555533332100 13455679999999999999998888654
No 136
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=44.90 E-value=5.3 Score=25.67 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=29.6
Q ss_pred cCC--HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 185 KFT--PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 185 kFT--~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
.++ .++.+.+..+.. -|+ ...++|..+||++.++..|+.+
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~--------s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY--------TVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC--------CHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHhcCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHh
Confidence 577 777777666533 232 4778999999999999988753
No 137
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=44.62 E-value=29 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=20.8
Q ss_pred CHHHHHHHHH----HHHHhCCccCCCCHHHHHHHHH
Q 026161 187 TPEQKDRMLE----LAEKLGWRIQKHDEEVVQQFCN 218 (242)
Q Consensus 187 T~EQkekM~~----fAeklGWRiqk~d~~~ve~fc~ 218 (242)
+++.+++|.. +|++.||++. +|++++..+-.
T Consensus 7 ~~~~~e~~~~f~ek~ae~~G~~~N-pD~evt~~vi~ 41 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRTDTYFC-SDLSVTAVVIE 41 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCB-SSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEC-CCHHHHHHHHH
Confidence 4566666666 5889999984 66666555443
No 138
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=44.39 E-value=7 Score=26.47 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHhCCC
Q 026161 209 DEEVVQQFCNDTGVK 223 (242)
Q Consensus 209 d~~~ve~fc~eiGv~ 223 (242)
....+.++|..+||+
T Consensus 43 ~~~~l~~ia~~l~v~ 57 (77)
T 2k9q_A 43 VVVKYIAFLRSKGVD 57 (77)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCcC
Confidence 344455555555554
No 139
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=43.81 E-value=4.1 Score=31.08 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++.+-|.+| ..-+.-+...++++|++.||++.+|-..|.|.
T Consensus 17 ~~~~r~~Il~aA~~l-f~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK 63 (216)
T 3qqa_A 17 VLARQEKIKAVALEL-FLTKGYQETSLSDIIKLSGGSYSNIYDGFKSK 63 (216)
T ss_dssp HHHHHHHHHHHHHHH-HHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSH
T ss_pred cHHHHHHHHHHHHHH-HHHcChhhCCHHHHHHHhCCCHHHHHHhcCCH
Confidence 344556666544443 11124566689999999999999999888764
No 140
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=43.70 E-value=7.3 Score=25.95 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHhCCCCceEEEecccc
Q 026161 214 QQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 214 e~fc~eiGv~r~V~KVWmhNn 234 (242)
++|+..+||++.++.-|..+.
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~ 44 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGR 44 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTT
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 455555555555555555443
No 141
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=43.32 E-value=2.6 Score=32.14 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++.+-|.+|=+ -+.-+...++++|++.||++.+|-..|.|.
T Consensus 24 ~~~~r~~Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFS-DKTYFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHH-HHCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred chhHHHHHHHHHHHHHH-HcCccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 34455666554333311 124556789999999999999998888663
No 142
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.15 E-value=5.9 Score=29.39 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEec
Q 026161 192 DRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWM 231 (242)
Q Consensus 192 ekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWm 231 (242)
+.+++++.+ -+...|+.++.||.+..++-+=+|-||
T Consensus 19 e~L~~Yy~~----hk~L~EeDl~~L~~kskms~qqvkdwF 54 (70)
T 2ys9_A 19 QPLERYWAA----HQQLRETDIPQLSQASRLSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHH----TCCCCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHH----hcccchhhHHHHHHHhCCCHHHHHHHH
Confidence 667887777 466788889999999999999999999
No 143
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=43.07 E-value=2.8 Score=32.26 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 29 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp GGHHHHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hhHHHHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCCH
Confidence 34556666644443222 24456689999999999999998888763
No 144
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=42.50 E-value=2.8 Score=34.70 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=39.3
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
..+.||+.|++.+.-+++- + ..++++..+||+.+++|..++|-+.|++-
T Consensus 170 ~~~~Lt~~e~~vl~~~~~g------~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAVG------K----TMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCCHHHHHHHHHHTTT------C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHcC------C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3467999999997665543 2 45788999999999999999998888764
No 145
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=42.30 E-value=3.7 Score=32.68 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++++-|.+|=+ -+.-+...++++|++.||++.+|-..|.|.
T Consensus 42 ~~~~r~~Il~aA~~lf~-e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 42 GDDRELAILATAENLLE-DRPLADISVDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHH-HcCcccCCHHHHHHHhCCcHHHHHHHCCCH
Confidence 34556666664444411 124456679999999999999998888764
No 146
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=41.79 E-value=5 Score=31.72 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|-..|.|.
T Consensus 47 G~~~~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 47 GYDGTSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred CccccCHHHHHHHHCCChhHHHHhCCCH
Confidence 4455679999999999999998887653
No 147
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=41.77 E-value=36 Score=22.90 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
-.|.|||++|.+ . +.+.+++.+|+++..+-|-++-.
T Consensus 13 grs~eqK~~l~~---~-----------lt~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIE---G-----------VSDLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHH---H-----------HHHHHHHHHCcCcccEEEEEEEe
Confidence 579999988654 3 45667888999999888877654
No 148
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.76 E-value=8.5 Score=25.25 Aligned_cols=22 Identities=9% Similarity=0.062 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCCceEEEecccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++|+..+||++.++.-|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4566666666666666665543
No 149
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.10 E-value=1.6 Score=33.57 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHH-HHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLEL-AEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~f-AeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++|+.|++.+.-+ ++- ...++.|..+||++.+++.|++.-+.++.
T Consensus 21 ~~L~~~~r~vl~l~y~~g----------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADD----------YSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GGSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 56899999987764 433 25789999999999999999998776653
No 150
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=40.66 E-value=15 Score=32.34 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.1
Q ss_pred CcCccCCHHHHHHHHHHHH
Q 026161 181 RFRTKFTPEQKDRMLELAE 199 (242)
Q Consensus 181 R~RTkFT~EQkekM~~fAe 199 (242)
..++.||+.|+++|+.+..
T Consensus 236 ~C~~~FT~gQ~~RM~~~~~ 254 (262)
T 2cki_A 236 KCMVMFTQGQATRVNACLD 254 (262)
T ss_dssp TTCCBCBHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHH
Confidence 3568999999999999666
No 151
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=40.35 E-value=1.5 Score=32.71 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=35.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++++.|++.+.-|.+ | ...+++|..+||+..+++.+++.-+.++.
T Consensus 108 ~~L~~~~r~v~~~~~~--g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 108 NNFSKFEKEVLTYLIR--G--------YSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HHSCHHHHHHHHHHTT--T--------CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHc--C--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3788889988873322 2 25788999999999999999988777653
No 152
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=40.13 E-value=3.9 Score=30.73 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.+|=++- +...++++|++.||++.+|-..|.|.
T Consensus 13 ~~~r~~Il~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPER 56 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 345677777666653333 67789999999999999998888763
No 153
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=40.09 E-value=11 Score=34.54 Aligned_cols=44 Identities=9% Similarity=-0.002 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHH---------HHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 026161 185 KFTPEQKDRMLELA---------EKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 185 kFT~EQkekM~~fA---------eklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmh 232 (242)
.+|++|+++.+.-. ..-|++ -...++++|.+.||++++|+-|+.
T Consensus 22 ~l~~~~~~~A~~r~~~i~~v~~l~~~g~~----~~~a~~~~a~~~gvS~~Tl~rW~~ 74 (529)
T 4fcy_A 22 NASDSQRRLAEKWLPAVQAADEMLNQGIS----TKTAFATVAGHYQVSASTLRDKYY 74 (529)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58888888743311 122443 346789999999999999999974
No 154
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=39.37 E-value=9.6 Score=25.70 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++||..+||++.++.-|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46778888888877777776543
No 155
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=39.24 E-value=3.4 Score=30.70 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 11 ~~tr~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 56 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYESK 56 (177)
T ss_dssp HHHHHHHHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCSST
T ss_pred HHHHHHHHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcCCH
Confidence 45567777777776444 23456689999999999999998777663
No 156
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=38.97 E-value=6.3 Score=30.92 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++++-|.+|=.+ +.-+...++++|++.||++.+|-..|.|.
T Consensus 34 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~sK 79 (221)
T 3g7r_A 34 SEARARLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFSGK 79 (221)
T ss_dssp CHHHHHHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hhHHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 34455555533332111 14455679999999999999998888764
No 157
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=38.87 E-value=23 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHh
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT 220 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~ei 220 (242)
+++||..|++++-..|-.-|-+-.+-......+|=..|
T Consensus 7 ~~~~t~~qLqkkfkHa~DFGi~~t~~N~~t~~~fedaI 44 (107)
T 1v74_A 7 SGRFSRKQLDKKYKHAGDFGISDTKKNRETLTKFRDAI 44 (107)
T ss_dssp BTTBCHHHHHHHGGGGGGGTCCCCCCSHHHHHHHHHHH
T ss_pred CCcccHHHHHhHhcccccccccccccChhhHHHHHHHH
Confidence 68999999999999999988888777776666665443
No 158
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.48 E-value=4.8 Score=26.72 Aligned_cols=19 Identities=5% Similarity=0.080 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 026161 207 KHDEEVVQQFCNDTGVKRH 225 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~ 225 (242)
.+....+.++|..+||+..
T Consensus 49 ~~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 49 QPSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp CCCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3556677777777777653
No 159
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=38.22 E-value=6.4 Score=30.78 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=39.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+|+.+++.|.-+++.+ ..++++++++++.+++++.+.|=+.|++-+
T Consensus 153 ~~Lt~rE~~vl~~l~~g~----------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL----------PNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 469999999988888752 367889999999999999999988887643
No 160
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=38.15 E-value=6.7 Score=29.97 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++.+-|.+|=++ +.-+...++++|++.||++.+|=..|.|.
T Consensus 12 ~~~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 12 IITQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp SHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34455555544443222 23455689999999999999998888764
No 161
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=38.04 E-value=1.2 Score=35.76 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=13.5
Q ss_pred CCCCCcCccCCHHHHHHHHHHHH
Q 026161 177 GSRKRFRTKFTPEQKDRMLELAE 199 (242)
Q Consensus 177 ~~~KR~RTkFT~EQkekM~~fAe 199 (242)
...||.||.||++|++.|.+.++
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQ 156 (169)
T ss_dssp -------EEEECCCCEECCSSCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHh
Confidence 45699999999999999887443
No 162
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=37.94 E-value=5.4 Score=30.17 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++.+-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 11 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 34455555433332111 14455679999999999999998888763
No 163
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=37.84 E-value=5.3 Score=30.83 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++.+-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 23 ~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK 67 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWPSK 67 (214)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCH
Confidence 3366666533332111 13445679999999999999998888663
No 164
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=37.65 E-value=42 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=30.0
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
+++.| |.|||++ ||+- +.+.||+-+|-+...++|-|+--+
T Consensus 9 ~~~pR---T~EQKra---laeE-----------~T~if~evLGcpPgsV~IVi~EV~ 48 (72)
T 3mb2_B 9 GDRPP---DRTRKQA---FAAE-----------ASAIFQRVIGTPPGRLQLIIQIVS 48 (72)
T ss_dssp CSSCC---CHHHHHH---HHHH-----------HHHHHHHHHCCCTTCCEEEEEECC
T ss_pred CCCCC---CHHHHHH---HHHH-----------HHHHHHHHhCCCCCcEEEEEEecC
Confidence 34555 5799976 4544 567899999999999999887543
No 165
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.51 E-value=3.5 Score=29.46 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
++++.|++.+.-.+-= ...+....++++..+||++.+++.+++.-+.++.+
T Consensus 18 ~L~~~er~vl~l~~~l-----~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGL-----LDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTT-----TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHcc-----CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5788899887664320 01122368899999999999999999988777654
No 166
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=37.20 E-value=29 Score=23.47 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.8
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklG 202 (242)
....|..||+|+-++|++..++.|
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC
Confidence 356788999999999999999977
No 167
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=37.08 E-value=4.5 Score=30.96 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=+. +.-+...++++|++.||++.+|--+|.|.
T Consensus 12 ~~r~~Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 12 ETQKAILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCCCH
Confidence 4455555533332111 14456689999999999999998888663
No 168
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=36.54 E-value=7.5 Score=27.53 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHhCCCC
Q 026161 208 HDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r 224 (242)
+....+.++|..+||+.
T Consensus 49 p~~~~l~~ia~~l~v~~ 65 (94)
T 2kpj_A 49 PRMGKVQALADYFNINK 65 (94)
T ss_dssp CCHHHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 34455555555555543
No 169
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.08 E-value=6.1 Score=30.68 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
.-+...++++|++.||++.+|--.|.|
T Consensus 28 Gy~~ts~~~IA~~aGvsk~tlY~~F~s 54 (202)
T 2i10_A 28 GYEGTSITDLTKALGINPPSLYAAFGS 54 (202)
T ss_dssp TTTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred CcccCCHHHHHHHhCCChHHHHHHhCC
Confidence 455667999999999999998777755
No 170
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=35.85 E-value=11 Score=26.51 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 026161 207 KHDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r 224 (242)
.+..+.+.++|.-+||+.
T Consensus 47 ~~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 47 ALTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp CCCHHHHHHHHHHTCSCH
T ss_pred CCCHHHHHHHHHHHCcCH
Confidence 344556666666666654
No 171
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=35.84 E-value=4.8 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=31.9
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
|+.+..=+.+-++++++-|.+|=+. +.-+...++++|++.||++.+|--.|.|.
T Consensus 15 ~~~~~~r~~~~r~~Il~aA~~lf~e-~G~~~~s~~~IA~~aGvskgtlY~yF~sK 68 (214)
T 2oer_A 15 KQPQQARSSELVASILEAAVQVLAS-EGAQRFTTARVAERAGVSIGSLYQYFPNK 68 (214)
T ss_dssp --------CHHHHHHHHHHHHC-------CCCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHh-hCcccccHHHHHHHhCCCCchHHHhCCCH
Confidence 3333333345677788777665333 23455689999999999999998888763
No 172
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=35.69 E-value=6.4 Score=30.24 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=|+ +.-+...++++|++.||++.+|-..|.|.
T Consensus 12 ~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 56 (197)
T 2hyt_A 12 ETRATLLATARKVFSE-RGYADTSMDDLTAQASLTRGALYHHFGDK 56 (197)
T ss_dssp HHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCTTHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3445555533333221 14455679999999999999998888663
No 173
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=35.59 E-value=11 Score=29.55 Aligned_cols=28 Identities=4% Similarity=-0.135 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 45 G~~~~t~~~IA~~aGvs~~tlY~~F~sK 72 (217)
T 3hta_A 45 GIAGLSHRTVAAEADVPLGSTTYHFATL 72 (217)
T ss_dssp TGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CcccCCHHHHHHHcCCCcchhhhcCCCH
Confidence 4455679999999999999998888653
No 174
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=35.40 E-value=9.9 Score=30.54 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCCcCccCCHHHHHH-HHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 179 RKRFRTKFTPEQKDR-MLE-LAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 179 ~KR~RTkFT~EQkek-M~~-fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+++-|...|.++.-. ..+ |+++ .-+.-.++++|.+.||++.+|-..|.|.
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~------G~~~~s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEV------GLDGVSTRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHH------CGGGCCHHHHHHHHTSCTHHHHTTCSSH
T ss_pred CcccccccCHHHHHHHHHHHHHhc------CcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 455566677665433 333 5554 4455679999999999999998888653
No 175
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=34.92 E-value=25 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCcCccCCHHHHHHHHHHHHHhCCc
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLGWR 204 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklGWR 204 (242)
+++...||+|+++.+.+.|+..|-.
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred eeEEEEECHHHHHHHHHHHHHhCCC
Confidence 4556689999999999999998743
No 176
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=34.75 E-value=48 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.1
Q ss_pred CccCCHHHHHHHHHHHHHhC
Q 026161 183 RTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklG 202 (242)
|..||+|.-+.|.++.++.|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999987
No 177
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=34.65 E-value=8.2 Score=30.44 Aligned_cols=45 Identities=2% Similarity=0.069 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccc
Q 026161 184 TKFTPEQKDRMLE-LAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 184 TkFT~EQkekM~~-fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~ 238 (242)
.++++.|++.+.- |. +....+++|..+||+..+++.+++.-+.++
T Consensus 197 ~~L~~~~r~vl~l~~~----------~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 197 EELDERERLIVYLRYY----------KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp --------------------------------------------------------
T ss_pred HhCCHHHHHHHHHHHh----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 3577777777654 33 234688999999999999999999888765
No 178
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=34.40 E-value=5.5 Score=31.54 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|.+.||++.+|-.+|-|.
T Consensus 31 G~~~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 31 GLGGLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp CTTCCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred CcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 3455679999999999999998888753
No 179
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=34.39 E-value=6 Score=30.13 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|--.|.|.
T Consensus 27 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (216)
T 3s5r_A 27 GIAATTMAEIAASVGVNPAMIHYYFKTR 54 (216)
T ss_dssp CTTTCCHHHHHHTTTCCHHHHHHHCSSH
T ss_pred CcccCCHHHHHHHHCCCHHHHHHHcCCH
Confidence 4456679999999999999998888664
No 180
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=34.34 E-value=6.8 Score=29.66 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|-..|.|.
T Consensus 33 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (213)
T 2qtq_A 33 DVVDISLSELSLRSGLNSALVKYYFGNK 60 (213)
T ss_dssp TSSCCCHHHHHHHHCCCHHHHHHHHSSH
T ss_pred CcccccHHHHHHHhCCChhhHhHhcCCH
Confidence 3445579999999999999998888764
No 181
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.10 E-value=11 Score=26.22 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 026161 208 HDEEVVQQFCNDTGVKRH 225 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r~ 225 (242)
+..+.+.++|+.+||+..
T Consensus 59 ~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 59 FSLESLIDMITSIGLKVE 76 (83)
T ss_dssp CCHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHcCCCeE
Confidence 455667777777777654
No 182
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=33.51 E-value=66 Score=20.78 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.|.|||++|. +. +.+.+++.+|+++..+-|-|+...
T Consensus 12 ~s~eqk~~l~---~~-----------lt~~l~~~lg~~~~~v~V~i~e~~ 47 (64)
T 3abf_A 12 RPPEKKRELV---RR-----------LTEMASRLLGEPYEEVRVILYEVR 47 (64)
T ss_dssp CCHHHHHHHH---HH-----------HHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CCHHHHHHHH---HH-----------HHHHHHHHhCCCcccEEEEEEEcC
Confidence 5889997754 33 466678889999999988777654
No 183
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=33.18 E-value=51 Score=22.78 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+|.|||++|-+ . +.+.+++.+|++...+-|.|+..
T Consensus 11 rls~eqk~~L~~---~-----------l~~~l~~~lgip~~~v~V~i~e~ 46 (76)
T 1gyx_A 11 ELDEQQKAALAA---D-----------ITDVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CCCHHHHHHHHH---H-----------HHHHHHHHHTCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHH---H-----------HHHHHHHHhCcCCceEEEEEEEe
Confidence 479999987543 3 45667778899998888877654
No 184
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=32.97 E-value=7.7 Score=31.01 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=38.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+|+.+++.|.-+++.+ ..++++++++++.+++++.+.|=+.|++-+
T Consensus 148 ~~LT~rE~~vL~~l~~g~----------s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEGL----------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TTSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHCCC----------CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 469999999888777651 357889999999999999999988887643
No 185
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.74 E-value=11 Score=24.89 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 026161 214 QQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 214 e~fc~eiGv~r~V~KVWmhN 233 (242)
++|+..+||++.++.-|..+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCC
Confidence 45666666666666555544
No 186
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=32.61 E-value=8.7 Score=29.26 Aligned_cols=28 Identities=7% Similarity=0.028 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 26 G~~~~ti~~IA~~agvs~~t~Y~~F~sK 53 (193)
T 2dg8_A 26 GIARVSHRRIAQRAGVPLGSMTYHFTGI 53 (193)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHHHCSSH
T ss_pred ChhhccHHHHHHHhCCCchhhheeCCCH
Confidence 4455679999999999999998888764
No 187
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=32.49 E-value=6.9 Score=31.42 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
..+-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 41 ~~~~r~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK 87 (255)
T 3g1o_A 41 GDDRELAILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSK 87 (255)
T ss_dssp CCHHHHHHHHHHHHHHTT-SCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 345566677766665222 23345679999999999999998888764
No 188
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.28 E-value=3.6 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
..+++.|++.+.-.+- | ...+....++++..+||++.+++.|++.-+.++.
T Consensus 9 ~~L~~~er~il~l~~~---l--~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKG---L--IDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHT---T--TTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHh---c--ccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3588999998766442 0 0112235789999999999999999888776654
No 189
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=32.24 E-value=6.8 Score=30.72 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=40.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhC---CCCceEEEeccccccccCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTG---VKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiG---v~r~V~KVWmhNnK~~~gk 240 (242)
..+|+.+.+.|.-+++..| ..-..++++++++ ++.+++++.+.|=|.|++.
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~------~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAG------KVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTT------SCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred EecCHHHHHHHHHHHHCCC------ceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 4599999999888888732 2235778899998 9999999999988888764
No 190
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=31.63 E-value=11 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 28 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 55 (196)
T 3he0_A 28 GFQGLSMQKLANEAGVAAGTIYRYFSDK 55 (196)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred CcccCCHHHHHHHhCCCcchHHHhcCCH
Confidence 4455679999999999999998887763
No 191
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=31.63 E-value=27 Score=27.17 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=14.5
Q ss_pred ccCCHHHHHHHHHHHHH
Q 026161 184 TKFTPEQKDRMLELAEK 200 (242)
Q Consensus 184 TkFT~EQkekM~~fAek 200 (242)
..+|+|||+++.+..++
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 67999999999996655
No 192
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=31.23 E-value=7.1 Score=31.29 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHh-----CCCCceEEEeccccccccCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT-----GVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~ei-----Gv~r~V~KVWmhNnK~~~gk 240 (242)
..+|+.+.+.|.-+++..| ..-..+++++++ +++.+++++.+.|=|.|++.
T Consensus 152 ~~LT~rE~~vL~~l~~~~~------~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPR------QVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTT------CCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred cccCHHHHHHHHHHHHCCC------ceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 4699999999998988732 122467777777 88888888888888877764
No 193
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.20 E-value=47 Score=27.81 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=24.5
Q ss_pred CccCCHHHHHHHHHHHHHh--------------------CCccCCCCHHHHHHHHHHhCC
Q 026161 183 RTKFTPEQKDRMLELAEKL--------------------GWRIQKHDEEVVQQFCNDTGV 222 (242)
Q Consensus 183 RTkFT~EQkekM~~fAekl--------------------GWRiqk~d~~~ve~fc~eiGv 222 (242)
.-.+|+||+++|.+..++. =+.-.++|++.|+++.+||.-
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~ 124 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMES 124 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3568999988876643320 122356788888888877753
No 194
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=30.59 E-value=10 Score=24.24 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.6
Q ss_pred ccccccccccccc
Q 026161 83 DGLKCAACNCHRN 95 (242)
Q Consensus 83 ~al~CaaCgCHRn 95 (242)
-.|+|.|||-+|.
T Consensus 20 ~~l~C~aCG~~~~ 32 (36)
T 1k81_A 20 HLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEhhcCCCccc
Confidence 4799999997764
No 195
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=30.35 E-value=17 Score=25.50 Aligned_cols=16 Identities=6% Similarity=-0.027 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHH--hCCC
Q 026161 208 HDEEVVQQFCND--TGVK 223 (242)
Q Consensus 208 ~d~~~ve~fc~e--iGv~ 223 (242)
+....+.++|+. ++|+
T Consensus 44 p~~~~l~~ia~~l~~~v~ 61 (99)
T 2l49_A 44 PPTDVMMNILQTPQFTKY 61 (99)
T ss_dssp CCHHHHHHHHSSSSSSSS
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 455566666666 4444
No 196
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=29.95 E-value=14 Score=30.10 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=12.2
Q ss_pred ccccccccccccccc
Q 026161 82 LDGLKCAACNCHRNF 96 (242)
Q Consensus 82 ~~al~CaaCgCHRnF 96 (242)
.-.|+|.|||.+|..
T Consensus 121 ~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 121 ISLLKCEACGAKAPL 135 (138)
T ss_dssp TTEEECSTTSCCCCS
T ss_pred eEEEEccCCCCCccc
Confidence 347999999998864
No 197
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.88 E-value=1.1e+02 Score=22.35 Aligned_cols=59 Identities=7% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHH----HHHHHHhCCCCceEEE---ecccccccc
Q 026161 178 SRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVV----QQFCNDTGVKRHVLKV---WMHNNKHTL 238 (242)
Q Consensus 178 ~~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~v----e~fc~eiGv~r~V~KV---WmhNnK~~~ 238 (242)
..||.|+..++++-+.|..+...+-++--.....+| .+|+.++|++ .|++ |+++=+.++
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~--~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMD--DFTASNGWLDRFRRRR 130 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCT--TCCCCHHHHHHHHHHT
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHHhc
Confidence 468889989998877788877765443333444444 4566777886 2443 777655444
No 198
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.86 E-value=11 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.-+.-.++++|++.||++.+|-..|.|..
T Consensus 34 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 34 GFDATSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp CTTTSCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred CcccCCHHHHHHHhCCCcchHhhhCCCHH
Confidence 44556799999999999999988887643
No 199
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=29.68 E-value=50 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.|.|||++|-+ . +-+.+.+.+||+...+-|-|+... .||
T Consensus 68 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 68 YGPSEPEKVTS---I-----------VTAAITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp CCTTHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEECCS-CCE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcceEEEEEEEhh-Hee
Confidence 35799977543 3 455678899999999999998877 554
No 200
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=29.37 E-value=11 Score=28.89 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 190 QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 190 QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
-++++++-|.+|=++ +.-+...++++|++.||++.+|-.+|.|.
T Consensus 11 tR~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~t~Y~~F~sK 54 (210)
T 3vib_A 11 TKEHLMLAALETFYR-KGIARTSLNEIAQAAGVTRDALYWHFKNK 54 (210)
T ss_dssp HHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHHHHCCCH
Confidence 355555533332111 14455679999999999999998888764
No 201
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=29.18 E-value=5.5 Score=30.24 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++.+-|.++=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 17 ~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 62 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCCH
Confidence 45566666644443111 13455579999999999999998888763
No 202
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=28.98 E-value=40 Score=28.56 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQK 207 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk 207 (242)
-.||+||+..+...+++.|+.|.+
T Consensus 176 ~~Fseeql~~~n~~l~q~G~~~~~ 199 (203)
T 1p5s_A 176 LSFTDEDVSIIVRRLRQSNVILPN 199 (203)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCC
Confidence 459999999999999999999765
No 203
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.92 E-value=8.7 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 026161 207 KHDEEVVQQFCNDTGVKRH 225 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~ 225 (242)
.++...+.++|..+||+..
T Consensus 47 ~~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVR 65 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 4667778888888887654
No 204
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=28.70 E-value=27 Score=24.93 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.1
Q ss_pred ccccccccccccCCCCCccccccccc--cccccccccc
Q 026161 65 HALDGCGEFMAAGDEGTLDGLKCAAC--NCHRNFHRKE 100 (242)
Q Consensus 65 ~a~DGCgEFm~~~~~g~~~al~CaaC--gCHRnFHr~e 100 (242)
..=|=|++|| .. ..|+|..| .||+-=+.+.
T Consensus 36 t~C~~C~~~l--~~----qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 36 GWCDLCGREV--LR----QALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CBCTTTSSBC--SS----CCEECTTSSCEECTGGGGGC
T ss_pred cchhhhhHHH--Hh----CcCccCCCCCeechhhhccC
Confidence 4457899999 33 46999999 5676655443
No 205
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=28.69 E-value=18 Score=24.64 Aligned_cols=17 Identities=0% Similarity=-0.103 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHhCCCC
Q 026161 208 HDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r 224 (242)
+....+.++|..+||+.
T Consensus 52 ~~~~~l~~i~~~l~~~~ 68 (88)
T 2wiu_B 52 TTLTTFFKILQSLELSM 68 (88)
T ss_dssp CBHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhCCCH
Confidence 34444555555555543
No 206
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.68 E-value=4.6 Score=31.95 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 40 ~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK 84 (225)
T 2id3_A 40 RIREAVLLAAGDALAA-DGFDALDLGEIARRAGVGKTTVYRRWGTP 84 (225)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred HHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCH
Confidence 3455555533332111 13455679999999999999998877663
No 207
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Probab=28.65 E-value=82 Score=25.87 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVK 223 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~ 223 (242)
+.|.|..+++|++++|.+|+.. .+++|.+.+|.+
T Consensus 233 ~~~~~~~l~~e~~~~L~~~~~~-----------~~~~L~~l~g~~ 266 (271)
T 1t8t_A 233 KGRTHPEIDREVVRRLREFYRP-----------FNLKFYQMTGHD 266 (271)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCcC
Confidence 3566789999999999997776 578888888865
No 208
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.57 E-value=2.5 Score=32.20 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHHHH-HHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLEL-AEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~f-AeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++++.|++.+.-+ ++. ...++.|..+||++.+++.+++.-+.++.
T Consensus 24 ~~L~~~~r~vl~l~~~~g----------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLED----------YSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GGSCHHHHHHHHHHHTSC----------CCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46888888886653 332 25789999999999999999998776653
No 209
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=28.40 E-value=9.9 Score=32.51 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=40.7
Q ss_pred cCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 182 FRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
....||+.|++.+.-+++- . ..++++..+||+.++++..+.|-+.|++-+
T Consensus 194 ~~~~Lt~re~~vl~~~~~G--~--------s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSRG--K--------TNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCCCHHHHHHHHHHHTT--C--------CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CcCCCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 3468999999998877643 2 357889999999999999999998888743
No 210
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=28.18 E-value=7.6 Score=29.34 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 12 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 58 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNK 58 (220)
T ss_dssp SHHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCH
Confidence 344555555533332111 14455679999999999999998888763
No 211
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=27.86 E-value=1e+02 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCce
Q 026161 185 KFTPEQKDRMLE-LAEKLGWRIQKHDE-EVVQQFCNDTGVKRHV 226 (242)
Q Consensus 185 kFT~EQkekM~~-fAeklGWRiqk~d~-~~ve~fc~eiGv~r~V 226 (242)
.||.+|.-+|+. ....|+|++.-+.- .-++.|+..++++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH
Confidence 589999999998 88999999998776 5788999999987653
No 212
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=27.80 E-value=8 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++||..+||++.++.-|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999998887654
No 213
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=27.57 E-value=8.4 Score=30.59 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=39.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
..+|+.+.+.|.-+++- + ..++++.+++++.+++++.+.|=+.|++-+
T Consensus 158 ~~Lt~rE~~vL~~l~~g--~--------s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 158 AKLTKREQQIIKLLGSG--A--------SNIEIADKLFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp HTSCHHHHHHHHHHTTT--C--------CHHHHHHHTTCCHHHHHHHHHHHTTTSCCS
T ss_pred ccCCHHHHHHHHHHHcC--C--------CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 35999999998888763 2 357889999999999999999988888754
No 214
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=27.45 E-value=4.9 Score=30.34 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 19 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K 64 (203)
T 3mnl_A 19 RERRKRILDATMAIASK-GGYEAVQMRAVADRADVAVGTLYRYFPSK 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHcCCChhHHHHHcCCH
Confidence 34456666544443111 13345679999999999999998888763
No 215
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.41 E-value=54 Score=22.59 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=19.5
Q ss_pred CCcCccCCHHHHHHHHHHHHHhC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklG 202 (242)
.-.|-.||+|.-++|..+.++.|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 34466899999999999999977
No 216
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=27.33 E-value=6.7 Score=31.12 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 13 ~~r~~Il~AA~~l~~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK 57 (231)
T 2qib_A 13 ERRQQLIGVALDLFSR-RSPDEVSIDEIASAAGISRPLVYHYFPGK 57 (231)
T ss_dssp HHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCCCH
Confidence 3445555544333111 23456689999999999999998888764
No 217
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.29 E-value=14 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.-+...++++|++.||++.+|-..|.|..
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 25 GVQEVTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred CccccCHHHHHHHcCCCchHHHHHcCCHH
Confidence 44556799999999999999988887653
No 218
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=27.22 E-value=60 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCceEEEeccccccc
Q 026161 212 VVQQFCNDTGVKRHVLKVWMHNNKHT 237 (242)
Q Consensus 212 ~ve~fc~eiGv~r~V~KVWmhNnK~~ 237 (242)
+.+.||++.||+...|+.||...|-.
T Consensus 66 Lm~aY~er~Gl~~~~irFlFDG~rI~ 91 (115)
T 3kyd_D 66 LKESYCQRQGVPMNSLRFLFEGQRIA 91 (115)
T ss_dssp HHHHHHHHHTCCTTSEEEEETTEECC
T ss_pred HHHHHHHHhCCChhhEEEEECCeECC
Confidence 45556666788899999999876643
No 219
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=27.15 E-value=42 Score=26.56 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 211 EVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 211 ~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
+.+++++.++||+..-+..|.=.+|++.-
T Consensus 70 ~~~~~va~~lg~~~~~~RlW~~~~RqN~T 98 (130)
T 2kvr_A 70 EFVQSLSQTMGFPQDQIRLWPMQARSNGT 98 (130)
T ss_dssp HHHHHHHHHHCCCGGGCEEEECCCCBTTB
T ss_pred HHHHHHHHHhCCCcccEEEEEeecCCCCC
Confidence 45677889999999999999777776543
No 220
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.82 E-value=45 Score=25.59 Aligned_cols=52 Identities=8% Similarity=0.028 Sum_probs=33.7
Q ss_pred CccCCHHHHHHHHHHHHH-hCCccCCCCHHHHHHHHHH------hCCCCceEEEecccccccc
Q 026161 183 RTKFTPEQKDRMLELAEK-LGWRIQKHDEEVVQQFCND------TGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 183 RTkFT~EQkekM~~fAek-lGWRiqk~d~~~ve~fc~e------iGv~r~V~KVWmhNnK~~~ 238 (242)
+.++|+++++.+.++.+. -.|.. .++.++|..+ +.|+..+|.-|++..+..-
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~----~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~ 139 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFA----WEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQP 139 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCH----HHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCccchH----HHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCC
Confidence 567899999998886554 33432 2333444322 3588899999998876653
No 221
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=26.75 E-value=42 Score=25.49 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCCceEEEecccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNKH 236 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK~ 236 (242)
.+.||++.||+...|+.+|...|-
T Consensus 53 m~aY~~~~g~~~~~vrF~FDG~rI 76 (97)
T 2jxx_A 53 MSHYEEAMGLSGRKLSFFFDGTKL 76 (97)
T ss_dssp HHHHHHHTTCSSSCCEEEETTEEC
T ss_pred HHHHHHHHCCCcccEEEEECCEEc
Confidence 344444556777888888877653
No 222
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=26.62 E-value=45 Score=28.93 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHHhCCccCC-----CCHHHHHHHHHHhCCCCceEEE
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQK-----HDEEVVQQFCNDTGVKRHVLKV 229 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk-----~d~~~ve~fc~eiGv~r~V~KV 229 (242)
.|+..|+.++..-++++||+.-- ..++.+++|+ +.|++-.+++|
T Consensus 99 i~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i-~~G~~aiiv~v 147 (237)
T 3rjz_A 99 LASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELL-NLGFKIMVVGV 147 (237)
T ss_dssp --CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHH-HTTCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHH-HCCCEEEEEEE
Confidence 57889999999999999988744 5567888887 57888888888
No 223
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=26.52 E-value=45 Score=25.24 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=19.3
Q ss_pred Cc-cCCHHHHHHHHHHHHHhCCccC
Q 026161 183 RT-KFTPEQKDRMLELAEKLGWRIQ 206 (242)
Q Consensus 183 RT-kFT~EQkekM~~fAeklGWRiq 206 (242)
|| .+++|.+++++++|..+|....
T Consensus 120 R~~~~~~e~~~~f~~~~~~~G~~~~ 144 (157)
T 1dzk_A 120 KGTDIEDQDLEKFKEVTRENGIPEE 144 (157)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 44 5899999999999999876543
No 224
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=26.38 E-value=22 Score=29.30 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCc-eEEEec
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRH-VLKVWM 231 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~-V~KVWm 231 (242)
+++.+.+.|+++.++-.+|.++.||.-. ......+.-.+.|+..+ -++.||
T Consensus 83 ~~~~~~~~s~~eI~~WN~~~~~rg~~d~--~~~~~~~~~~~~~~~~R~dI~T~f 134 (145)
T 3omd_A 83 HSQSPRSKNPKEVESFNREYESRSPDSP--EKWDYFRSVRDSLAPGRTDITTWV 134 (145)
T ss_dssp HHHCGGGGCHHHHHHHHHHHHHCCCSSH--HHHHHHHHHHHHHCTTCTTCCSHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHccCCCCCccchhh
Confidence 4666678899999999999999999322 23444455566676655 588887
No 225
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=26.18 E-value=5.7 Score=29.85 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 31 G~~~~t~~~IA~~agvs~~t~Y~~F~sK 58 (191)
T 4aci_A 31 GYEGATVRRLEEATGKSRGAIFHHFGDK 58 (191)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred CcccCCHHHHHHHHCCCchHHHHHCCCH
Confidence 3445679999999999999998888753
No 226
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=26.16 E-value=15 Score=28.18 Aligned_cols=46 Identities=4% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.+|=|+ +.-+...++++|++.||++.+|-.+|.|.
T Consensus 8 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvsk~tlY~~F~sK 53 (203)
T 3cdl_A 8 DQKRESIVQAAIAEFGD-RGFEITSMDRIAARAEVSKRTVYNHFPSK 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHTTSSSH
T ss_pred hhHHHHHHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCCCH
Confidence 44456555533333222 14455679999999999999998888764
No 227
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.09 E-value=21 Score=26.32 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 026161 190 QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 190 QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmh 232 (242)
+++.+.+..++-+|. +.+.|+.+||+|.+|.-||.
T Consensus 42 Er~~I~~aL~~~~GN--------~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 42 RWEHIQRIYEMCDRN--------VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHHTTSC--------HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHH
Confidence 455566666776664 46789999999999987775
No 228
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.08 E-value=4.9 Score=26.12 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.++.+..+||+..+++.++++-+.+++.+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999888777653
No 229
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=25.96 E-value=81 Score=21.96 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.|.|||++|.+ . +.+.+++.+|+++..+-|.++-.
T Consensus 12 rs~eqK~~L~~---~-----------it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 12 RTDEQKRALSA---G-----------LLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHHCcCcccEEEEEEEe
Confidence 48999987543 3 56667888999998877776543
No 230
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=25.94 E-value=98 Score=26.21 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=35.6
Q ss_pred ccCCHHHHHHHHH-HHHHhCCccCCCCH-HHHHHHHHHhCCCCc
Q 026161 184 TKFTPEQKDRMLE-LAEKLGWRIQKHDE-EVVQQFCNDTGVKRH 225 (242)
Q Consensus 184 TkFT~EQkekM~~-fAeklGWRiqk~d~-~~ve~fc~eiGv~r~ 225 (242)
-.||.+|.-+|+. ..+.|+|++.-+.- .-+..|+..++++..
T Consensus 130 ~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~ 173 (271)
T 2w96_A 130 NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEE 173 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCch
Confidence 3589999999988 88999999998776 578899998888654
No 231
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=25.94 E-value=13 Score=28.42 Aligned_cols=45 Identities=9% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+...++++|++.||++.+|-.+|.|.
T Consensus 11 ~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sK 55 (212)
T 2ras_A 11 AMRARLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFETR 55 (212)
T ss_dssp HHHHHHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 3455555533332111 13445679999999999999998888774
No 232
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=25.89 E-value=39 Score=27.49 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.2
Q ss_pred CccCCHHHHHHHHHHHHH
Q 026161 183 RTKFTPEQKDRMLELAEK 200 (242)
Q Consensus 183 RTkFT~EQkekM~~fAek 200 (242)
-..+|+|||+++.+..++
T Consensus 116 y~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 116 YRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HTTSCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHH
Confidence 357999999999994444
No 233
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.82 E-value=87 Score=19.96 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
|.|||++|- +. +.+.+++.+|+++..+-|-|+...
T Consensus 12 s~eqk~~l~---~~-----------i~~~l~~~lg~~~~~v~V~i~e~~ 46 (61)
T 2opa_A 12 TDEQKRNLV---EK-----------VTEAVKETTGASEEKIVVFIEEMR 46 (61)
T ss_dssp CHHHHHHHH---HH-----------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CHHHHHHHH---HH-----------HHHHHHHHhCcCcCeEEEEEEEcC
Confidence 889997754 33 456677788999988888777543
No 234
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=25.78 E-value=10 Score=31.58 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=38.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGK 240 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gk 240 (242)
...+|+.|++.+.-+++- + ..++++.++||+.++++.-+.|-+.|++-
T Consensus 173 ~~~Lt~re~~vl~~~~~G------~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVG------K----TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHTT------C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcC------C----CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 467999999988776643 1 35788999999999999999998888764
No 235
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=25.78 E-value=2.9 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 58 (215)
T 3e7q_A 13 EQRKALLIEATLACLKR-HGFQGASVRKICAEAGVSVGLINHHYDGK 58 (215)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34466666644443111 13445679999999999999998888764
No 236
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=25.67 E-value=79 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.0
Q ss_pred CCcCccCCHHHHHHHHHHHHHhC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklG 202 (242)
...|..||+|.-++|+++.++.|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 45677999999999999999977
No 237
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.67 E-value=23 Score=29.00 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=29.4
Q ss_pred CCcCccCCHHHHHH-HHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 180 KRFRTKFTPEQKDR-MLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 180 KR~RTkFT~EQkek-M~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++.|...|.++.-. -.+.+.+- .-+.-.++++|+++||++.+|-..|.|.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~-----G~~~~s~~~IA~~aGvs~~tlY~hF~~K 60 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTV-----GERGLTFRALAERLATGPGAIYWHITGK 60 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHT-----TTTTCCHHHHHHHHTSCGGGGGGTCCCH
T ss_pred CCCCCccCHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHCCChHHHHHhcCCH
Confidence 44455566554322 33333332 4455679999999999999998888763
No 238
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.53 E-value=19 Score=24.44 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=10.4
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 026161 214 QQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 214 e~fc~eiGv~r~V~KVWmhN 233 (242)
++||..+||++.++.-|..+
T Consensus 28 ~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHCC
Confidence 44555555555555555443
No 239
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=25.39 E-value=68 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmh 232 (242)
.||+|||++ +|+. +-+.+++-+|+++.-+.|.|+
T Consensus 11 ~~t~eqK~a---La~~-----------It~a~~e~~~vP~~~v~Vif~ 44 (149)
T 3mf7_A 11 RLTPSAKHA---VAKA-----------ITDAHRGLTGTQHFLAQVNFQ 44 (149)
T ss_dssp TSCHHHHHH---HHHH-----------HHHHHHHTCCTTCCCCEEEEE
T ss_pred CCCHHHHHH---HHHH-----------HHHHHHHHHCcChHHEEEEEE
No 240
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=25.32 E-value=16 Score=28.13 Aligned_cols=47 Identities=6% Similarity=0.052 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++.+-|.+|=..-+.-+.-.++++|++.||++.+|-..|.|.
T Consensus 10 ~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK 56 (220)
T 3lsj_A 10 QQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDM 56 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSH
T ss_pred HhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 34566677766665220123456789999999999999999888864
No 241
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.31 E-value=22 Score=25.89 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=25.4
Q ss_pred CcCccCCHHHHHHHHHH-------HHHhCCccCCCCHHHHHHHHHHhCCCCceE
Q 026161 181 RFRTKFTPEQKDRMLEL-------AEKLGWRIQKHDEEVVQQFCNDTGVKRHVL 227 (242)
Q Consensus 181 R~RTkFT~EQkekM~~f-------AeklGWRiqk~d~~~ve~fc~eiGv~r~V~ 227 (242)
|.+-.+|++|+.+.... .|+ | ..+..+.+.++|+-+||+..-|
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~-G---~~~s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGK-N---ENVSLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT-T---CCCCHHHHHHHHHHHTCCGGGT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc-C---CCcCHHHHHHHHHHHCcCHHHH
Confidence 44456777766654321 111 3 2356778888888888876543
No 242
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.28 E-value=1e+02 Score=20.84 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.|.|||++|.+ . +.+.++..+|+++..+-|-++-.
T Consensus 12 rs~eqK~~L~~---~-----------it~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELAR---A-----------LSAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCCCcccEEEEEEEc
Confidence 58999987654 2 45667788999988888777654
No 243
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=25.18 E-value=48 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCceEEEecccccc
Q 026161 212 VVQQFCNDTGVKRHVLKVWMHNNKH 236 (242)
Q Consensus 212 ~ve~fc~eiGv~r~V~KVWmhNnK~ 236 (242)
+.+.||++.||+...++.+|...+-
T Consensus 34 l~~~y~~~~gi~~~~~rf~fdG~~l 58 (79)
T 3a4r_A 34 LMSHYEEAMGLSGHKLSFFFDGTKL 58 (79)
T ss_dssp HHHHHHHHHTCTTCCCEEEETTEEC
T ss_pred HHHHHHHHhCCCcccEEEEECCEEc
Confidence 5566677777888888888876653
No 244
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.10 E-value=8.2 Score=29.70 Aligned_cols=48 Identities=8% Similarity=0.189 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
..+++-++++.+-|.+|=.+ +.-+.-.++++|++.||++.+|-..|.|
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred hCCHHHHHHHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 34566667766654444222 2345567999999999999998777765
No 245
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.09 E-value=90 Score=19.88 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.|.|||++|-+ . +.+.+.+.+|++...+-|-|+...
T Consensus 11 rs~e~k~~l~~---~-----------i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 11 RTDEQKETLIR---Q-----------VSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEEeC
Confidence 38899977543 3 455677778999888777776543
No 246
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=25.08 E-value=8 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 208 HDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
-+.-.++++|++.||++.+|--.|.|.
T Consensus 26 ~~~~t~~~IA~~agvs~~t~Y~~F~sK 52 (195)
T 3frq_A 26 PIEFTLSGVAKEVGLSRAALIQRFTNR 52 (195)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 345579999999999999988777664
No 247
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=25.04 E-value=9.6 Score=30.65 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 23 ~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~sK 67 (231)
T 2zcx_A 23 QREEAILDAARELGTE-RGIREITLTDIAATVGMHKSALLRYFETR 67 (231)
T ss_dssp HHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCH
Confidence 4445555433332111 14455679999999999999998888764
No 248
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.03 E-value=9.8 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccCCC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLGKK 241 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~gkk 241 (242)
.+|..+++.|.-+++. + ..++++.+++++.+++++.++|=+.|++.+
T Consensus 142 ~Lt~rE~~vl~~l~~g--~--------s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG--L--------MNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp TSCHHHHHHHHHHTTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred hcCHHHHHHHHHHHcC--C--------cHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4777777776666543 1 246788999999999999999988888653
No 249
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.82 E-value=20 Score=26.29 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHhCCCC
Q 026161 208 HDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r 224 (242)
+....+.++|.-+||+.
T Consensus 61 p~~~~l~~ia~~l~v~~ 77 (114)
T 3vk0_A 61 IALSNIEKMAAALGVAA 77 (114)
T ss_dssp CCHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHhCCCH
Confidence 45556666666666653
No 250
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.75 E-value=5.5 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++++-|.+|=++ +.-+...++++|++.||++.+|-.+|.|.
T Consensus 17 ~~~R~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 44566666544332000 13345679999999999999998888763
No 251
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.66 E-value=21 Score=29.43 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=11.9
Q ss_pred ccccccccccccccc
Q 026161 82 LDGLKCAACNCHRNF 96 (242)
Q Consensus 82 ~~al~CaaCgCHRnF 96 (242)
.-.|+|.|||..|.-
T Consensus 123 ~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 123 FHFLKCEACGAETPI 137 (148)
T ss_dssp SBCCCCSSSCCCCCC
T ss_pred EEEEEecCCCCCccc
Confidence 458999999987753
No 252
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=24.66 E-value=9.1 Score=29.01 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 187 TPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 187 T~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.++-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 12 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK 58 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFESK 58 (212)
T ss_dssp CHHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred chhhHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCCH
Confidence 345556666544433221 24455679999999999999998888763
No 253
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.63 E-value=12 Score=28.90 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
.+-++++++-|.+|=|+ +.-+...++++|.+.||++.+|-..|.|
T Consensus 11 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvsk~tlY~hF~s 55 (200)
T 2hyj_A 11 QATRGRILGRAAEIASE-EGLDGITIGRLAEELEMSKSGVHKHFGT 55 (200)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred hccHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHcCC
Confidence 34456666544443222 1445567999999999999999888865
No 254
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.61 E-value=24 Score=23.88 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccc
Q 026161 190 QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 190 QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhN 233 (242)
+++.+....++.+|. +.+.|..+||+|.+|.-||..
T Consensus 20 E~~~i~~aL~~~~gn--------~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 20 EKIFIEEKLREYDYD--------LKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHTTTC--------HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHHCcCHHHHHHHHHH
Confidence 444455555665554 568899999999999888753
No 255
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=24.57 E-value=7.7 Score=28.72 Aligned_cols=45 Identities=9% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++.+-|.+|=++ +.-+.-.++++|++.||++.+|--.|.|.
T Consensus 8 ~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 52 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKNK 52 (188)
T ss_dssp HHHHHHHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCCH
Confidence 3344555544433111 24456689999999999999987777664
No 256
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=24.49 E-value=19 Score=27.77 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|-..|.|.
T Consensus 28 G~~~~s~~~IA~~aGvskgtlY~~F~sK 55 (219)
T 2w53_A 28 GVARTTLEMIGARAGYTRGAVYWHFKNK 55 (219)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred CcccCCHHHHHHHhCCCchHHhhcCCCH
Confidence 4456679999999999999998888663
No 257
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=24.37 E-value=7.3 Score=29.61 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCCceEEEecccc
Q 026161 211 EVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 211 ~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
..++++|++.||++.+|-..|.|.
T Consensus 35 ~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred CCHHHHHHHhCCChHHHHHHcCCH
Confidence 579999999999999998888763
No 258
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=24.27 E-value=12 Score=28.44 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|-..|.|.
T Consensus 28 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 55 (216)
T 3f0c_A 28 GLCKTTMNEIASDVGMGKASLYYYFPDK 55 (216)
T ss_dssp CSSSCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4455679999999999999998888774
No 259
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=24.25 E-value=47 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=18.3
Q ss_pred cCccCCHHHHHHHHHHHHHhC
Q 026161 182 FRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 182 ~RTkFT~EQkekM~~fAeklG 202 (242)
+|..+|+|.-++|++..++.|
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G 28 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLG 28 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 366899999999999999976
No 260
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.02 E-value=20 Score=24.25 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=9.9
Q ss_pred HHHHHHhCCCCceEEEeccc
Q 026161 214 QQFCNDTGVKRHVLKVWMHN 233 (242)
Q Consensus 214 e~fc~eiGv~r~V~KVWmhN 233 (242)
++|+..+||++.++.-|..+
T Consensus 31 ~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCC
Confidence 34555555555555544443
No 261
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=23.84 E-value=6.9 Score=31.01 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+...++++|++.||++.+|--.|.|.
T Consensus 56 G~~~~tv~~IA~~AGvs~~tlY~~F~sK 83 (214)
T 2guh_A 56 PYREITLKDIAEDAGVSAPLIIKYFGSK 83 (214)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred ChhhcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4455689999999999999998888653
No 262
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.58 E-value=21 Score=30.16 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.9
Q ss_pred cccccccccccccccc
Q 026161 82 LDGLKCAACNCHRNFH 97 (242)
Q Consensus 82 ~~al~CaaCgCHRnFH 97 (242)
.-.|+|.|||.+|.-.
T Consensus 117 ~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 117 TIGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEEETTTCCCCCSC
T ss_pred EEEEEccccCCccccc
Confidence 4479999999988654
No 263
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.44 E-value=1.8e+02 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=26.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCc-cCCCCHHHHHHHHHHhCCC
Q 026161 183 RTKFTPEQKDRMLELAEKLGWR-IQKHDEEVVQQFCNDTGVK 223 (242)
Q Consensus 183 RTkFT~EQkekM~~fAeklGWR-iqk~d~~~ve~fc~eiGv~ 223 (242)
|.++|++|++.|++.+..+--- --+-+...+..+.+.+|..
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~ 48 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 5679999999999866653211 1233456666666666654
No 264
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=23.36 E-value=10 Score=30.71 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++++-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 47 ~~tr~~Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sK 92 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPTR 92 (260)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCCH
Confidence 34455555533332111 14455679999999999999998888764
No 265
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=23.23 E-value=97 Score=24.73 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcc-CCCCHHHHHHHHHHh
Q 026161 189 EQKDRMLELAEKLGWRI-QKHDEEVVQQFCNDT 220 (242)
Q Consensus 189 EQkekM~~fAeklGWRi-qk~d~~~ve~fc~ei 220 (242)
+.-+++.+|++.+|.|| .|-|+++.+.++-.|
T Consensus 77 ~Hy~ri~~~l~d~e~Ki~kkl~~ev~~~i~~~~ 109 (116)
T 1yoz_A 77 IHFERLKEFAESKGFKIEKKLDPEVINEIALYI 109 (116)
T ss_dssp HHHHHHHHHHHTTC---CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHH
Confidence 34567889999999999 788999999888655
No 266
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=23.10 E-value=7.7 Score=28.95 Aligned_cols=46 Identities=7% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++-++++.+-|.++=++ +.-+.-.++++|++.||++.+|-..|.|.
T Consensus 9 ~~~r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp -CHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCSCH
T ss_pred HhHHHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcCCH
Confidence 34455555533332111 14455679999999999999998888764
No 267
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.03 E-value=24 Score=24.27 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=24.7
Q ss_pred CCcCccCCHHHHHHHHH----HHHHh--CCccCCCCHHHHHHHHHHhCCCC
Q 026161 180 KRFRTKFTPEQKDRMLE----LAEKL--GWRIQKHDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~----fAekl--GWRiqk~d~~~ve~fc~eiGv~r 224 (242)
.|-+..+|++|+.+... ...++ | +...+..+.+.++|+-+||+.
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G-~~~~p~~~~l~~ia~~l~v~~ 67 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN-LQTNPSIQFLEKVSAVLDVSV 67 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT-SCCCCBHHHHHHHHHHHTCCH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCCHHHHHHHHHHHCcCH
Confidence 44555677766655332 11110 1 124567778888888888764
No 268
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.00 E-value=73 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.406 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCceEEEeccccccc
Q 026161 210 EEVVQQFCNDTGVKRHVLKVWMHNNKHT 237 (242)
Q Consensus 210 ~~~ve~fc~eiGv~r~V~KVWmhNnK~~ 237 (242)
+.+.+.||++.||+...++.+|...+-.
T Consensus 25 ~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 25 SKLMKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 3567778888888888899998776543
No 269
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=22.90 E-value=65 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=18.9
Q ss_pred CCcCccCCHHHHHHHHHHHHHhC
Q 026161 180 KRFRTKFTPEQKDRMLELAEKLG 202 (242)
Q Consensus 180 KR~RTkFT~EQkekM~~fAeklG 202 (242)
.+.|.+||+|.-++|.++.++.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHccC
Confidence 44567899999999999999987
No 270
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=22.63 E-value=23 Score=24.20 Aligned_cols=26 Identities=35% Similarity=0.727 Sum_probs=17.8
Q ss_pred ccccccccccccCCCCCcccccccccc--ccccc
Q 026161 65 HALDGCGEFMAAGDEGTLDGLKCAACN--CHRNF 96 (242)
Q Consensus 65 ~a~DGCgEFm~~~~~g~~~al~CaaCg--CHRnF 96 (242)
..=|=|++|| .. ..|+|..|+ ||+-=
T Consensus 23 t~C~~C~~~i--~k----qg~kC~~C~~~cH~kC 50 (59)
T 1rfh_A 23 GWCDLCGREV--LR----QALRCANCKFTCHSEC 50 (59)
T ss_dssp EECTTTCSEE--CS----CCEECTTTSCEECHHH
T ss_pred eEchhcchhh--hh----CccEeCCCCCeEehhh
Confidence 3457899999 33 469999984 55443
No 271
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.62 E-value=6.9 Score=30.10 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 190 QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 190 QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
-++++++-|.+|=++--. ...++++|++.||++.+|-.+|.|.
T Consensus 14 ~r~~Il~aA~~lf~~~G~--~~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGL--GVPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHHHHHHTCT--TSCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHhcCC--CCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 355566544444332233 3579999999999999998888764
No 272
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=22.62 E-value=10 Score=30.45 Aligned_cols=28 Identities=4% Similarity=0.117 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 63 G~~~~t~~~IA~~aGvs~~t~Y~~F~sK 90 (245)
T 3aqt_A 63 GVDNVGIAEITEGANIGTGTFYNYFPDR 90 (245)
T ss_dssp CGGGCCHHHHHHHTTSCGGGGGGTCSSH
T ss_pred CcccCcHHHHHHHhCCChHHHHHHcCCH
Confidence 3345679999999999999998888774
No 273
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.61 E-value=4.3 Score=31.43 Aligned_cols=46 Identities=0% Similarity=0.003 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLE-LAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~-fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++++.|++.+.- |.+. -..+++|..+||+..+++.+++.-+.++.
T Consensus 139 ~~L~~~~r~vl~l~~~~g----------~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 139 ESLPEDLRMAITLRELDG----------LSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HHSCHHHHHHHHHHHTTC----------CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHhHHHHHcC----------CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3567777777654 3332 24678999999999999999998877654
No 274
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=22.57 E-value=9.2 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCceEEEecc
Q 026161 213 VQQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmh 232 (242)
+.++|+.+||+.++|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 67899999999999999965
No 275
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.53 E-value=32 Score=22.24 Aligned_cols=27 Identities=30% Similarity=0.775 Sum_probs=18.0
Q ss_pred cccccccccccCCCCCcccccccccc--cccccccc
Q 026161 66 ALDGCGEFMAAGDEGTLDGLKCAACN--CHRNFHRK 99 (242)
Q Consensus 66 a~DGCgEFm~~~~~g~~~al~CaaCg--CHRnFHr~ 99 (242)
.=|=|++||- ..|+|..|+ ||+.-+.+
T Consensus 16 ~C~~C~~~l~-------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 16 FCDICQKFLL-------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp ECTTSSSEEC-------SEEECTTTTCCBCSTTSSS
T ss_pred CCCCcccccc-------cCCEeCCCCCeEChhHHhh
Confidence 3467899986 469999885 45444433
No 276
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=22.41 E-value=1.2e+02 Score=22.12 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
..|.|||++|- .. +-+.+.+.+||+...+-|.|+...
T Consensus 67 g~~~eqk~~l~---~~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 67 KIGGPQNKSYT---KL-----------LCDILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp CCSHHHHHHHH---HH-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCCHHHHHHHH---HH-----------HHHHHHHHhCcCcceEEEEEEECC
Confidence 34799997754 33 455678889999999999888665
No 277
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=22.24 E-value=19 Score=28.96 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccc
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHT 237 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~ 237 (242)
++++++.+++.++..+ ..-+.++|+++||++.+|.-|+.+.+..
T Consensus 142 ~~~~~~~~~i~~l~~~---------G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 142 KLTKAEWEQAGRLLAQ---------GIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHc---------CCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 4677776665553322 2357889999999999999999887754
No 278
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=22.21 E-value=12 Score=27.88 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 25 GFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred CcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 4456679999999999999998888764
No 279
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=22.13 E-value=12 Score=28.71 Aligned_cols=27 Identities=4% Similarity=0.103 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+ ..++++|++.||++.+|-.+|.|.
T Consensus 29 G~~-~s~~~IA~~agvs~~tiY~~F~sK 55 (224)
T 1t33_A 29 GLH-ATTRDIAALAGQNIAAITYYFGSK 55 (224)
T ss_dssp GGG-SCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred Ccc-ccHHHHHHHhCCCHHHHHHhcCCH
Confidence 344 679999999999999998888764
No 280
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=22.10 E-value=72 Score=24.78 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHhCCccCC
Q 026161 186 FTPEQKDRMLELAEKLGWRIQK 207 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk 207 (242)
++++.+++++++++++|+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~G~~~~~ 154 (174)
T 2hzq_A 133 LPPETVDSLKNILTSNNIDVKK 154 (174)
T ss_dssp CCHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6899999999999999987643
No 281
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=22.01 E-value=8.4 Score=32.08 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 189 EQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 189 EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+-++++++-|.+|=++ +.-+.-.++++|++.||++.+|-.+|.|.
T Consensus 41 ~tr~~Il~AA~~lf~e-~G~~~~S~~~IA~~AGVs~~tlY~hF~sK 85 (273)
T 3c07_A 41 QTRALILETAMRLFQE-RGYDRTTMRAIAQEAGVSVGNAYYYFAGK 85 (273)
T ss_dssp HHHHHHHHHHHHHHHH-TCSTTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHh-CCccccCHHHHHHHHCCCHHHHHHHcCCH
Confidence 4455555544433111 23455679999999999999998888653
No 282
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.92 E-value=42 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
..||.++...++ ++.||. .++|+..+||++.++.-|-.+.
T Consensus 9 ~~~~g~~lr~~R---~~~glt--------q~elA~~~gvs~~tis~~E~G~ 48 (73)
T 3fmy_A 9 ETVAPEFIVKVR---KKLSLT--------QKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp CCCCHHHHHHHH---HHTTCC--------HHHHHHHHCSCTTHHHHHHTTS
T ss_pred CCCCHHHHHHHH---HHcCCC--------HHHHHHHhCcCHHHHHHHHcCC
Confidence 456776665544 444553 5678888888888887776654
No 283
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=21.88 E-value=22 Score=26.29 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCCcCcc-CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccccccc
Q 026161 178 SRKRFRTK-FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTL 238 (242)
Q Consensus 178 ~~KR~RTk-FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~ 238 (242)
..||.|.+ .|.++ |++..+.| ++ +...+-+.|.+.||++.+|.-=++..-.+.
T Consensus 5 ~pk~~ryr~Yte~~---L~~Ai~aV----r~-g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~ 58 (70)
T 2cob_A 5 SSGRGRYRQYNSEI---LEEAISVV----MS-GKMSVSKAQSIYGIPHSTLEYKVKERLGTL 58 (70)
T ss_dssp CCCSSCSCCCCHHH---HHHHHHHH----HT-TSSCHHHHHHHHTCCHHHHHHHHHHHTTTT
T ss_pred CcccccccccCHHH---HHHHHHHH----Hc-CCccHHHHHHHhCCChHHHHHHHHhhcccc
Confidence 34444443 44444 44444442 22 226789999999999999875555544433
No 284
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=21.87 E-value=14 Score=27.41 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 207 KHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.-+.-.++++|++.||++.+|-..|.|.
T Consensus 27 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (196)
T 3col_A 27 GPAGVSTTKVAKRVGIAQSNVYLYFKNK 54 (196)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred CcccCCHHHHHHHhCCcHHHHHHHhCCH
Confidence 4455679999999999999998888764
No 285
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=21.67 E-value=1.2e+02 Score=20.02 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.|.|||++|.+ . +.+.+++.+|+++..+-|-|+-.
T Consensus 11 rs~eqk~~L~~---~-----------it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 11 RSPQEVAALGE---A-----------LTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEEc
Confidence 48999988654 2 45567778899888777766543
No 286
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=21.65 E-value=54 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=18.3
Q ss_pred CCCcCc-----cCCHHHHHHHHHHHHHhCCcc
Q 026161 179 RKRFRT-----KFTPEQKDRMLELAEKLGWRI 205 (242)
Q Consensus 179 ~KR~RT-----kFT~EQkekM~~fAeklGWRi 205 (242)
+|||.| -+|+||..+=.++.-+.||++
T Consensus 7 ~kkfeTfSyLP~Lt~eqI~kQV~yll~qGw~~ 38 (118)
T 3zxw_B 7 ERRYETFSYLPPLSDAQIARQIQYAIDQGYHP 38 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEE
T ss_pred CccccccccCCCCCHHHHHHHHHHHHhCCCee
Confidence 477887 578999999888999999975
No 287
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=20 Score=29.83 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.4
Q ss_pred ccccccccccccccccc
Q 026161 82 LDGLKCAACNCHRNFHR 98 (242)
Q Consensus 82 ~~al~CaaCgCHRnFHr 98 (242)
.-.|+|.|||.+|...-
T Consensus 124 ~~~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 124 TIGNSCKACGYRGMLDT 140 (157)
T ss_dssp EEEEECSSSCCEEECCC
T ss_pred EEEEEccCCCCCCcccc
Confidence 45799999999887653
No 288
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=21.59 E-value=18 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 191 KDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 191 kekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++++++-|.+|=|+ +.-+...++++|++.||++.+|-.+|.|.
T Consensus 13 r~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2xdn_A 13 RAQIIEAAERAFYK-RGVARTTLADIAELAGVTRGAIYWHFNNK 55 (210)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCTTHHHHHCSSH
T ss_pred HHHHHHHHHHHHHH-cCcccCcHHHHHHHHCCChHHHHHHhCCH
Confidence 45555533333221 14455679999999999999998888763
No 289
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=21.51 E-value=8.6 Score=30.59 Aligned_cols=7 Identities=71% Similarity=1.516 Sum_probs=3.9
Q ss_pred EEEeccc
Q 026161 227 LKVWMHN 233 (242)
Q Consensus 227 ~KVWmhN 233 (242)
+||||||
T Consensus 54 vkvwmqn 60 (127)
T 2jpf_A 54 VKVWMQN 60 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3556655
No 290
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.32 E-value=1.3e+02 Score=21.77 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.|.|||++|-+ . +-+.+.+.+||++..+-|.|+...
T Consensus 67 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 67 IEPSRNRDHSA---K-----------LFDHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp CSHHHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcCeEEEEEEECC
Confidence 47999977543 3 455678899999999999888665
No 291
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.27 E-value=23 Score=29.23 Aligned_cols=49 Identities=6% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCcCccCCHHHHHH-HHH-HHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 180 KRFRTKFTPEQKDR-MLE-LAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 180 KR~RTkFT~EQkek-M~~-fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
++.|...|.++.-. -.+ |.++ .-+.-.++++|+++||++.+|-..|.|.
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~------G~~~~S~~~IA~~aGvs~~tlY~hF~sK 63 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAE------GLEKVTMRRLAQELDTGPASLYVYVANT 63 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHH------CSSSCCHHHHHHHTTSCHHHHTTTCCSH
T ss_pred CCCCcccCHHHHHHHHHHHHHhc------CchhcCHHHHHHHHCCChhHHHHHcCCH
Confidence 33455566665322 233 4444 4455679999999999999998777663
No 292
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=21.07 E-value=29 Score=28.21 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.6
Q ss_pred ccccccccccccccc
Q 026161 82 LDGLKCAACNCHRNF 96 (242)
Q Consensus 82 ~~al~CaaCgCHRnF 96 (242)
.-.|+|.|||.+|..
T Consensus 122 ~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 122 SWYIVCLACGAQTPV 136 (139)
T ss_dssp TTTSSCCC-------
T ss_pred eEEEEecCCCCCCcc
Confidence 458999999988753
No 293
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.01 E-value=28 Score=25.23 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecc
Q 026161 190 QKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMH 232 (242)
Q Consensus 190 QkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmh 232 (242)
+++.+....++.||.+ .+.|+.+||+|.+|.-||.
T Consensus 52 E~~~i~~aL~~~~gn~--------~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHK--------QEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHTTTCT--------THHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCH--------HHHHHHHCcCHHHHHHHHH
Confidence 4555666666666643 4679999999999977764
No 294
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.79 E-value=30 Score=22.46 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHhCCCC
Q 026161 208 HDEEVVQQFCNDTGVKR 224 (242)
Q Consensus 208 ~d~~~ve~fc~eiGv~r 224 (242)
+....+.++|..+||+.
T Consensus 50 ~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 50 VTVQRLAELADFYGVPV 66 (71)
T ss_dssp CCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44555666666666553
No 295
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=20.75 E-value=12 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCCceEEEeccccc
Q 026161 213 VQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 213 ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.++|+..+||++.+|.-|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999988887754
No 296
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=20.51 E-value=13 Score=29.22 Aligned_cols=26 Identities=4% Similarity=0.188 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHhCCCCceEEEecccc
Q 026161 209 DEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 209 d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
+...++++|++.||++.+|-..|.|.
T Consensus 49 ~~~s~~~IA~~aGvs~~tlY~~F~sK 74 (226)
T 2pz9_A 49 AGARVDRIAKQARTSKERVYAYFRSK 74 (226)
T ss_dssp HHCCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred ccCcHHHHHHHHCCChHHHHHHcCCH
Confidence 45579999999999999998888663
No 297
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.44 E-value=1.4e+02 Score=22.01 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccc
Q 026161 186 FTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235 (242)
Q Consensus 186 FT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK 235 (242)
.|.|||++|-+ . +-+.+.+.+||+...+-|.|+...
T Consensus 68 ~~~eqk~~l~~---~-----------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 68 LSADDNIRHTQ---K-----------ITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CCHHHHHHHHH---H-----------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHH---H-----------HHHHHHHHhCcCcccEEEEEEECC
Confidence 47999977543 3 455678889999999999888665
No 298
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=20.44 E-value=69 Score=24.46 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHhCCccC
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQ 206 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiq 206 (242)
.+++|.+++++++|+++|....
T Consensus 126 ~~~~~~~~~f~~~~~~~G~~~~ 147 (162)
T 3o22_A 126 TPRAELKEKFTAFCKAQGFTED 147 (162)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4789999999999999887543
No 299
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.26 E-value=13 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEec
Q 026161 185 KFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWM 231 (242)
Q Consensus 185 kFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWm 231 (242)
.+|.++.++++++-... ...+...+.+++.++||++.+++-.+
T Consensus 10 ~~~~~~~~~IL~~L~~~----~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEEL----GEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHH----CSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 35677777777766662 22334568999999999988765443
No 300
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.24 E-value=6.7 Score=31.06 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEeccccccccC
Q 026161 184 TKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHTLG 239 (242)
Q Consensus 184 TkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNnK~~~g 239 (242)
.++++.|++.+.-... +....++++..+||++.+++.+++.-+.++.
T Consensus 186 ~~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TTSCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh---------cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4578888888665331 1235788999999999999999988776653
No 301
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Probab=20.24 E-value=1.2e+02 Score=25.26 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCCcCccCCHHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCC
Q 026161 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVK 223 (242)
Q Consensus 179 ~KR~RTkFT~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~ 223 (242)
+.|.+..+++|++++|.+|+.. .+++|.+.+|.+
T Consensus 243 k~~~~~~l~~~~~~~L~~~f~p-----------~~~~L~~llg~~ 276 (280)
T 3bd9_A 243 KGRIHPEVDPSVITKLRKFFHP-----------FNQKFYQITGRT 276 (280)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHSCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCCC
Confidence 3456789999999999998776 688888888864
No 302
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.23 E-value=28 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHhCCCCceE
Q 026161 207 KHDEEVVQQFCNDTGVKRHVL 227 (242)
Q Consensus 207 k~d~~~ve~fc~eiGv~r~V~ 227 (242)
.+....+.++|+.+||+..-|
T Consensus 52 ~p~~~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 52 IPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp CCCHHHHHHHHHHHTBCCSST
T ss_pred CCCHHHHHHHHHHHCcCHHHH
Confidence 467778888888888877654
No 303
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.07 E-value=98 Score=22.61 Aligned_cols=26 Identities=8% Similarity=0.419 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCceEEEeccccccc
Q 026161 212 VVQQFCNDTGVKRHVLKVWMHNNKHT 237 (242)
Q Consensus 212 ~ve~fc~eiGv~r~V~KVWmhNnK~~ 237 (242)
+.+.||.+.||+...++.+|...+-.
T Consensus 43 l~~~y~~~~gi~~~~~rf~fdG~~l~ 68 (93)
T 2d07_B 43 LMKAYCERQGLSMRQIRFRFDGQPIN 68 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHHhCCCccceEEEECCEEcC
Confidence 45556666778888899998876643
No 304
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=20.06 E-value=11 Score=28.37 Aligned_cols=46 Identities=7% Similarity=0.123 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHhCCCCceEEEecccc
Q 026161 188 PEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNN 234 (242)
Q Consensus 188 ~EQkekM~~fAeklGWRiqk~d~~~ve~fc~eiGv~r~V~KVWmhNn 234 (242)
.+-++++.+-|.+|=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 10 ~~~r~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 10 NNKRTELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 44555655544333222 14445679999999999999998888763
No 305
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=20.04 E-value=33 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=9.0
Q ss_pred ccccccccccc
Q 026161 82 LDGLKCAACNC 92 (242)
Q Consensus 82 ~~al~CaaCgC 92 (242)
.++++|.||.-
T Consensus 19 ~~~~kC~aCet 29 (34)
T 3gj5_B 19 ADSTKCIACES 29 (34)
T ss_dssp SSCSBCTTTCC
T ss_pred cccCEEcccCC
Confidence 57899999963
Done!