BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026163
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178
L+G IPS ++ + L + L ++RLTG IP +GRL NL L LS+N G IP LG
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
+LSG IP EI ++ L L L + ++G IP E+G LR L LDLS N + G IP +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP 174
+SGSIP E+ L L L+L S++L G IP M L L +DLS+N + G IP
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179
+L G IP E+ + L+TL L + LTG IPS + NL + LS+N + G IP +GR
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 180 XXXXXXXXXXXXXXVGNIPLTL 201
GNIP L
Sbjct: 510 LENLAILKLSNNSFSGNIPAEL 531
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT 176
SN L+G IP I L L L+L ++ +G IP+E+G R+L+ LDL+ N G IP
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 177 L 177
+
Sbjct: 555 M 555
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 42/104 (40%)
Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXV 194
LQ L L ++ TG IP + LV L LS NY+ G IP +LG
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 195 GNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLTTLAMSN 238
G IP L + G IP L + T L +++SN
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 88 LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG 147
L+ +N+ G++ +C L S + NYL SG+IPS + +LS L+ L+L + L G
Sbjct: 396 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXX 207
IP E+ ++ L L L N + G IP L G IP +
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 208 XXXXXXXXXXVGNIPPTLGHLTQL 231
GNIP LG L
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSL 537
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
Query: 93 DNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE 152
+ + G+ R +C LK I SN + G IP L LQ L L ++ TG IP
Sbjct: 230 NKLSGDFSRAISTC-TELKLLNISSNQFV-GPIPP--LPLKSLQYLSLAENKFTGEIPDF 285
Query: 153 M-GRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPL-TLCHXXXXXXX 210
+ G L LDLS N+ G +PP G G +P+ TL
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 211 XXXXXXXVGNIPPTLGHLT-QLTTLAMS 237
G +P +L +L+ L TL +S
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLS 373
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
L G IP ++AL+ML ++L ++ L+G IP EMG+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 724
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 88 LWYENDNMKGEL-GRFNFSCFPNLKSFKIHSNYLLSGSIPSEITAL-------------S 133
++ +ND MK E G N F ++S +++ LS P IT+
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNR---LSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178
+ L++ + L+G IP E+G + L L+L N I G IP +G
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178
L+G IPS ++ + L + L ++RLTG IP +GRL NL L LS+N G IP LG
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
+LSG IP EI ++ L L L + ++G IP E+G LR L LDLS N + G IP +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP 174
+SGSIP E+ L L L+L S++L G IP M L L +DLS+N + G IP
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 120 LLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179
+L G IP E+ + L+TL L + LTG IPS + NL + LS+N + G IP +GR
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 180 XXXXXXXXXXXXXXVGNIPLTL 201
GNIP L
Sbjct: 513 LENLAILKLSNNSFSGNIPAEL 534
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 117 SNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT 176
SN L+G IP I L L L+L ++ +G IP+E+G R+L+ LDL+ N G IP
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 177 L 177
+
Sbjct: 558 M 558
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 42/105 (40%)
Query: 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXV 194
LQ L L ++ TG IP + LV L LS NY+ G IP +LG
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 195 GNIPLTLCHXXXXXXXXXXXXXXVGNIPPTLGHLTQLTTLAMSNK 239
G IP L + G IP L + T L +++SN
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 88 LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG 147
L+ +N+ G++ +C L S + NYL SG+IPS + +LS L+ L+L + L G
Sbjct: 399 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPLTLCHXXXX 207
IP E+ ++ L L L N + G IP L G IP +
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 208 XXXXXXXXXXVGNIPPTLGHLTQL 231
GNIP LG L
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSL 540
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
Query: 93 DNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE 152
+ + G+ R +C LK I SN + G IP L LQ L L ++ TG IP
Sbjct: 233 NKLSGDFSRAISTC-TELKLLNISSNQFV-GPIPP--LPLKSLQYLSLAENKFTGEIPDF 288
Query: 153 M-GRLRNLVRLDLSDNYIGGYIPPTLGRXXXXXXXXXXXXXXVGNIPL-TLCHXXXXXXX 210
+ G L LDLS N+ G +PP G G +P+ TL
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 211 XXXXXXXVGNIPPTLGHLT-QLTTLAMS 237
G +P +L +L+ L TL +S
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLS 376
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157
L G IP ++AL+ML ++L ++ L+G IP EMG+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 727
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 88 LWYENDNMKGEL-GRFNFSCFPNLKSFKIHSNYLLSGSIPSEITAL-------------S 133
++ +ND MK E G N F ++S +++ LS P IT+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNR---LSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178
+ L++ + L+G IP E+G + L L+L N I G IP +G
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 65 TSDHCK--WTGIRCNSAGSVIRVSLLWYENDNMKGELG-RFNFSCFPNLKSFKIHSNYLL 121
T+D C W G+ C++ RV+ L N+ + + P L I L
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 122 SGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177
G IP I L+ L L + + ++G IP + +++ LV LD S N + G +PP++
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 121 LSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL-VRLDLSDNYIGGYIPPTLG 178
LSG++P I++L L + +R++G IP G L + +S N + G IPPT
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT-LELPSSRLTGIIPSEMGRLRNLVRLD 163
S PNL N + SG+IP + S L T + + +RLTG IP L NL +D
Sbjct: 146 SSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 164 LSDNYIGG 171
LS N + G
Sbjct: 204 LSRNMLEG 211
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 99 LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158
L + F+ FP+L+ +++ N ++S P L L+TL L S+RL I L N
Sbjct: 47 LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 159 LVRLDLSDNYI 169
L +LD+S+N I
Sbjct: 106 LTKLDISENKI 116
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.17, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 88 LWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGS----IPSEITALSMLQTLELPSS 143
LW+ D L FN S N+ + + L+G+ +P+EI LS L+ L+L +
Sbjct: 225 LWHALD--LSNLQIFNISA--NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
Query: 144 RLTGIIPSEMGRLRNLVRLDLSDNYI 169
RLT +P+E+G L DN +
Sbjct: 281 RLTS-LPAELGSCFQLKYFYFFDNMV 305
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 126 PSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
P L LQ L S++LT I +L L +LDL+DN++
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 123 GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYI 169
S+P+ I + Q L L +R+T + P RL L RLDL +N +
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP 126
D C T RC S +RV+ E + ELG C L+ + S
Sbjct: 36 DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--LQGLQTPS--------- 84
Query: 127 SEITALSMLQTLELPSSRLT----GIIPSEMGRLRNLVRLDLSDNYIG 170
+Q L L + LT G++ S + L L L LSDN +G
Sbjct: 85 ------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP 126
D C T RC S +RV+ E + ELG C L+ + S
Sbjct: 35 DDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV--LQGLQTPS--------- 83
Query: 127 SEITALSMLQTLELPSSRLT----GIIPSEMGRLRNLVRLDLSDNYIG 170
+Q L L + LT G++ S + L L L LSDN +G
Sbjct: 84 ------CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLE---LPSSRLTGIIPSEMGRLRNLVRLDLS 165
+L+ + N GSI S+ L M+ +LE L S L I LRN+ LDLS
Sbjct: 449 DLRHLNLQGNSFQDGSI-SKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLS 507
Query: 166 DNYIGG 171
N + G
Sbjct: 508 HNSLTG 513
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGG 171
++ A + LQ L L SSR+ I L +L LDLSDN++
Sbjct: 71 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 114
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGG 171
++ A + LQ L L SSR+ I L +L LDLSDN++
Sbjct: 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,693,278
Number of Sequences: 62578
Number of extensions: 201306
Number of successful extensions: 565
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 59
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)