Query 026163
Match_columns 242
No_of_seqs 474 out of 2788
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1E-25 2.2E-30 215.6 17.2 192 41-241 27-248 (968)
2 PLN00113 leucine-rich repeat r 99.8 3.3E-20 7.2E-25 177.8 10.5 137 103-240 159-295 (968)
3 KOG0617 Ras suppressor protein 99.8 9.1E-21 2E-25 141.6 -5.2 155 78-242 31-186 (264)
4 KOG0617 Ras suppressor protein 99.6 9.1E-18 2E-22 125.7 -2.6 135 102-241 27-162 (264)
5 PLN03150 hypothetical protein; 99.6 3.8E-15 8.3E-20 136.1 12.0 149 39-194 368-528 (623)
6 KOG4194 Membrane glycoprotein 99.6 6.7E-16 1.5E-20 134.3 4.6 139 101-241 190-329 (873)
7 KOG4194 Membrane glycoprotein 99.6 1E-15 2.2E-20 133.2 4.5 156 80-241 78-233 (873)
8 KOG0444 Cytoskeletal regulator 99.5 7.8E-16 1.7E-20 135.1 -1.1 137 101-242 96-258 (1255)
9 KOG0444 Cytoskeletal regulator 99.5 4.5E-15 9.7E-20 130.4 -0.3 136 101-241 48-185 (1255)
10 PLN03150 hypothetical protein; 99.5 1.2E-13 2.7E-18 126.3 7.6 106 135-240 420-526 (623)
11 KOG4237 Extracellular matrix p 99.5 3.6E-14 7.9E-19 118.5 3.6 158 80-242 67-335 (498)
12 KOG0472 Leucine-rich repeat pr 99.4 3.2E-15 6.9E-20 125.0 -3.0 152 81-242 389-541 (565)
13 KOG0472 Leucine-rich repeat pr 99.4 8.6E-15 1.9E-19 122.5 -6.2 111 125-241 198-309 (565)
14 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-13 2.7E-18 116.3 0.6 139 104-242 132-291 (319)
15 PF14580 LRR_9: Leucine-rich r 99.4 2.7E-13 5.9E-18 104.0 2.2 127 104-236 15-147 (175)
16 PLN03210 Resistant to P. syrin 99.4 7.7E-12 1.7E-16 121.9 12.7 82 80-168 634-715 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.3 2.3E-13 4.9E-18 114.7 1.1 160 79-242 80-263 (319)
18 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 8.8E-17 117.6 7.9 142 80-242 220-380 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 6.5E-12 1.4E-16 116.3 8.4 143 79-242 198-359 (754)
20 PF14580 LRR_9: Leucine-rich r 99.3 1.8E-12 4E-17 99.5 3.8 109 129-242 15-126 (175)
21 PRK15387 E3 ubiquitin-protein 99.3 9.6E-12 2.1E-16 114.9 8.9 99 134-242 343-458 (788)
22 KOG0618 Serine/threonine phosp 99.3 1.8E-13 3.9E-18 124.6 -3.0 129 107-240 358-487 (1081)
23 PLN03210 Resistant to P. syrin 99.2 6.3E-11 1.4E-15 115.6 12.7 152 80-239 611-812 (1153)
24 KOG0618 Serine/threonine phosp 99.2 6.2E-13 1.3E-17 121.2 -1.4 150 81-239 360-510 (1081)
25 KOG0532 Leucine-rich repeat (L 99.2 5E-13 1.1E-17 116.3 -2.1 134 101-242 114-247 (722)
26 KOG1259 Nischarin, modulator o 99.2 7.7E-13 1.7E-17 107.4 -1.8 133 103-242 279-412 (490)
27 PRK15387 E3 ubiquitin-protein 99.2 1.3E-10 2.7E-15 107.6 10.3 75 108-195 242-316 (788)
28 PF13855 LRR_8: Leucine rich r 99.1 4.4E-11 9.6E-16 76.0 3.3 59 182-240 2-60 (61)
29 PF13855 LRR_8: Leucine rich r 99.1 6.9E-11 1.5E-15 75.0 3.8 60 158-217 2-61 (61)
30 KOG0532 Leucine-rich repeat (L 99.1 1.2E-12 2.6E-17 113.9 -6.2 148 82-242 77-224 (722)
31 COG4886 Leucine-rich repeat (L 99.1 5.5E-11 1.2E-15 103.5 3.9 149 81-241 117-289 (394)
32 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 103.3 3.7 133 81-224 141-296 (394)
33 KOG3207 Beta-tubulin folding c 99.0 7.3E-11 1.6E-15 100.0 1.2 134 107-241 196-338 (505)
34 KOG3207 Beta-tubulin folding c 98.9 7.1E-11 1.5E-15 100.1 -1.5 137 105-241 169-313 (505)
35 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.7E-15 94.7 -0.1 104 132-241 283-386 (490)
36 KOG4237 Extracellular matrix p 98.9 6.7E-11 1.5E-15 99.2 -4.2 130 109-241 68-200 (498)
37 KOG4658 Apoptotic ATPase [Sign 98.7 2.2E-08 4.8E-13 94.5 4.7 129 107-236 544-675 (889)
38 KOG1859 Leucine-rich repeat pr 98.6 3.8E-10 8.3E-15 101.2 -6.8 126 109-241 165-291 (1096)
39 KOG1859 Leucine-rich repeat pr 98.6 2.2E-09 4.8E-14 96.4 -4.1 102 134-241 165-266 (1096)
40 KOG4579 Leucine-rich repeat (L 98.6 2.1E-09 4.7E-14 78.0 -3.8 87 104-194 49-136 (177)
41 KOG4658 Apoptotic ATPase [Sign 98.5 5.5E-08 1.2E-12 91.9 3.4 131 104-238 519-651 (889)
42 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3.1E-13 89.0 -0.6 108 104-218 91-199 (414)
43 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.6E-13 88.6 -0.5 107 129-241 91-198 (414)
44 KOG1909 Ran GTPase-activating 98.5 2.5E-08 5.4E-13 82.7 0.2 89 153-241 209-310 (382)
45 KOG3665 ZYG-1-like serine/thre 98.4 8.2E-08 1.8E-12 88.6 1.9 132 108-241 122-262 (699)
46 PF12799 LRR_4: Leucine Rich r 98.4 4E-07 8.7E-12 53.4 3.4 37 181-218 1-37 (44)
47 KOG4579 Leucine-rich repeat (L 98.4 2.2E-08 4.8E-13 72.8 -2.5 107 110-222 29-139 (177)
48 KOG1644 U2-associated snRNP A' 98.4 8E-07 1.7E-11 68.7 5.6 102 134-237 43-148 (233)
49 KOG1909 Ran GTPase-activating 98.4 9.4E-08 2E-12 79.3 0.6 111 132-242 156-283 (382)
50 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 51.6 3.5 38 157-195 1-38 (44)
51 KOG2739 Leucine-rich acidic nu 98.2 5.3E-07 1.2E-11 72.2 1.2 87 129-219 39-130 (260)
52 KOG1644 U2-associated snRNP A' 98.1 5.9E-06 1.3E-10 64.0 5.2 104 135-242 21-126 (233)
53 KOG3665 ZYG-1-like serine/thre 98.1 6.3E-07 1.4E-11 82.8 -0.3 139 80-222 122-267 (699)
54 KOG2120 SCF ubiquitin ligase, 98.0 2.9E-07 6.2E-12 75.3 -4.3 60 178-239 310-373 (419)
55 PF13306 LRR_5: Leucine rich r 97.8 0.00012 2.7E-09 53.0 8.2 127 99-232 3-129 (129)
56 COG5238 RNA1 Ran GTPase-activa 97.8 1.5E-05 3.2E-10 64.7 3.1 37 203-239 212-252 (388)
57 PRK15386 type III secretion pr 97.8 8.9E-05 1.9E-09 64.2 8.0 71 80-169 52-124 (426)
58 KOG2982 Uncharacterized conser 97.8 7.9E-06 1.7E-10 67.0 0.7 69 71-143 86-156 (418)
59 KOG2120 SCF ubiquitin ligase, 97.7 9E-07 1.9E-11 72.4 -5.1 131 109-239 186-348 (419)
60 PF08263 LRRNT_2: Leucine rich 97.6 6E-05 1.3E-09 43.9 3.2 30 42-77 2-43 (43)
61 PRK15386 type III secretion pr 97.6 0.00026 5.7E-09 61.3 7.9 124 67-215 60-187 (426)
62 KOG2739 Leucine-rich acidic nu 97.5 5.8E-05 1.2E-09 60.7 2.9 92 149-242 35-129 (260)
63 KOG2123 Uncharacterized conser 97.5 2.3E-06 5E-11 69.5 -5.3 83 134-220 20-103 (388)
64 KOG2982 Uncharacterized conser 97.5 3.2E-05 6.9E-10 63.5 1.2 84 132-215 70-156 (418)
65 COG5238 RNA1 Ran GTPase-activa 97.5 0.0001 2.3E-09 59.9 3.4 157 80-242 30-227 (388)
66 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.9E-08 47.5 6.3 107 128-239 7-113 (129)
67 KOG2123 Uncharacterized conser 97.1 2E-05 4.3E-10 64.1 -4.6 79 130-211 38-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.0023 5E-08 31.3 0.6 18 207-225 2-19 (22)
69 KOG0473 Leucine-rich repeat pr 95.7 0.00014 3.1E-09 57.8 -7.3 88 128-218 37-124 (326)
70 KOG0473 Leucine-rich repeat pr 95.6 0.0002 4.4E-09 56.9 -6.6 94 98-195 32-125 (326)
71 PF13504 LRR_7: Leucine rich r 94.2 0.029 6.3E-07 25.5 1.1 7 137-143 5-11 (17)
72 KOG1947 Leucine rich repeat pr 93.6 0.012 2.5E-07 52.2 -1.5 111 107-217 187-307 (482)
73 KOG3864 Uncharacterized conser 92.5 0.012 2.7E-07 45.9 -2.6 83 133-215 101-186 (221)
74 KOG1947 Leucine rich repeat pr 92.4 0.04 8.7E-07 48.8 0.2 111 130-240 185-306 (482)
75 smart00370 LRR Leucine-rich re 91.1 0.22 4.7E-06 25.1 2.0 13 134-146 3-15 (26)
76 smart00369 LRR_TYP Leucine-ric 91.1 0.22 4.7E-06 25.1 2.0 13 134-146 3-15 (26)
77 smart00370 LRR Leucine-rich re 90.9 0.22 4.7E-06 25.1 1.9 14 205-218 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 90.9 0.22 4.7E-06 25.1 1.9 14 205-218 2-15 (26)
79 KOG4308 LRR-containing protein 90.2 0.0049 1.1E-07 55.0 -7.8 37 205-241 262-302 (478)
80 KOG4308 LRR-containing protein 90.0 0.0052 1.1E-07 54.9 -7.8 157 82-242 89-275 (478)
81 KOG4341 F-box protein containi 89.0 0.15 3.2E-06 44.3 0.5 131 107-237 293-434 (483)
82 PF13516 LRR_6: Leucine Rich r 89.0 0.17 3.7E-06 25.0 0.5 13 229-241 2-14 (24)
83 smart00365 LRR_SD22 Leucine-ri 87.5 0.51 1.1E-05 24.0 1.8 13 205-217 2-14 (26)
84 KOG3864 Uncharacterized conser 86.2 0.088 1.9E-06 41.3 -2.2 33 157-189 151-184 (221)
85 smart00368 LRR_RI Leucine rich 85.1 0.74 1.6E-05 23.7 1.7 12 230-241 3-14 (28)
86 KOG3763 mRNA export factor TAP 84.6 0.38 8.3E-06 43.2 0.7 63 155-219 216-284 (585)
87 KOG4341 F-box protein containi 84.5 0.55 1.2E-05 40.9 1.6 112 105-216 317-437 (483)
88 smart00364 LRR_BAC Leucine-ric 82.8 0.87 1.9E-05 23.2 1.3 13 158-170 3-15 (26)
89 KOG3763 mRNA export factor TAP 67.4 2.5 5.5E-05 38.2 1.0 62 179-242 216-283 (585)
90 smart00367 LRR_CC Leucine-rich 45.6 15 0.00032 18.2 1.3 11 133-143 2-12 (26)
91 TIGR00864 PCC polycystin catio 42.4 17 0.00037 39.4 2.2 32 139-170 1-32 (2740)
92 TIGR00864 PCC polycystin catio 42.2 18 0.0004 39.2 2.3 31 114-146 1-32 (2740)
93 PF07172 GRP: Glycine rich pro 39.1 27 0.00059 23.9 2.1 12 1-13 1-12 (95)
94 KOG4242 Predicted myosin-I-bin 26.6 33 0.00071 30.8 1.1 18 133-150 165-182 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1e-25 Score=215.61 Aligned_cols=192 Identities=36% Similarity=0.583 Sum_probs=128.3
Q ss_pred cHHHHHHHHhc-CCC------CCCCCCCCCCCCCCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEE
Q 026163 41 VQLEREALLIT-GWW------YDNWATSGNYTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSF 113 (242)
Q Consensus 41 ~~~~~~~l~~~-~~w------~~~~~~~~~~~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L 113 (242)
.+.|+.+|+.. ..+ ...| ....++|.|.||+|+..++|+.|+++++ ++.+.+ +..+..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~~~~v~~L~L~~~---~i~~~~-~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNW----NSSADVCLWQGITCNNSSRVVSIDLSGK---NISGKI-SSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCC----CCCCCCCcCcceecCCCCcEEEEEecCC---CccccC-ChHHhCCCCCCEE
Confidence 45788888761 111 1222 1246899999999987889999999988 888877 6778889999999
Q ss_pred EecCCCcccccCchhhh-cCCCCCEEeccCccCCC----------------------CCChhccCCcCCcEEEcccCcCC
Q 026163 114 KIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTG----------------------IIPSEMGRLRNLVRLDLSDNYIG 170 (242)
Q Consensus 114 ~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~Ls~N~l~ 170 (242)
++++|+ +.+.+|..+. .+++|++|++++|++++ .+|..++++++|++|++++|.+.
T Consensus 99 ~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 99 NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred ECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 998654 4556776544 66666666666666654 44445555566666666666665
Q ss_pred CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 171 GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 171 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 55566666666666666666666655666666666666666666666666666666666666666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=3.3e-20 Score=177.79 Aligned_cols=137 Identities=37% Similarity=0.602 Sum_probs=61.4
Q ss_pred CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
.+..+++|++|++++|. +.+.+|..+.++++|++|++++|++++.+|..++++++|++|++++|++++.+|..++++++
T Consensus 159 ~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred HHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 34444444444444322 22334444444444444444444444444444444444444444444444444444444444
Q ss_pred CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 4444444444444444444444444444444444444444444444444444444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=9.1e-21 Score=141.64 Aligned_cols=155 Identities=26% Similarity=0.449 Sum_probs=139.4
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 157 (242)
...++++|.++++ .+. .+ ++.+..+.+|+.|++.+|.+ ..+|..++.+++|+.|++.-|++. ..|..|+.++
T Consensus 31 ~~s~ITrLtLSHN---Kl~-~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHN---KLT-VV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred chhhhhhhhcccC---cee-ec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 3567899999987 554 44 78899999999999996655 578999999999999999999998 8999999999
Q ss_pred CCcEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163 158 NLVRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 158 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
.|+.||+.+|.+.. .+|..|-.+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+++|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 99999999999863 67888888999999999999999 78999999999999999999987 78999999999999999
Q ss_pred cCCCCC
Q 026163 237 SNKVAI 242 (242)
Q Consensus 237 s~N~lt 242 (242)
.+|+++
T Consensus 181 qgnrl~ 186 (264)
T KOG0617|consen 181 QGNRLT 186 (264)
T ss_pred ccceee
Confidence 999874
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=9.1e-18 Score=125.66 Aligned_cols=135 Identities=24% Similarity=0.456 Sum_probs=123.7
Q ss_pred CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
+.+-.+.+++.|.+++|++ ..+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl--~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKL--TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCce--eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 4455677888999998887 568888999999999999999999 88999999999999999999998 8999999999
Q ss_pred CCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 182 KLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 182 ~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
.|+.|++.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 99999999999875 68989999999999999999998 7899999999999999999975
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=3.8e-15 Score=136.11 Aligned_cols=149 Identities=24% Similarity=0.393 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHh-cCCCCCCCCCCCCCCCCCC-----cccceEeCCC-----CCeEEEEecccCCCCceeeeCCCCcCCC
Q 026163 39 SPVQLEREALLI-TGWWYDNWATSGNYTSDHC-----KWTGIRCNSA-----GSVIRVSLLWYENDNMKGELGRFNFSCF 107 (242)
Q Consensus 39 ~~~~~~~~~l~~-~~~w~~~~~~~~~~~~~~C-----~w~gv~c~~~-----~~v~~L~l~~~~~~~~~~~i~~~~~~~l 107 (242)
.+.+.|..||.. ...+.. ....+ |..++| .|.||.|... ..++.|+|.++ ++.|.+ +..+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~~~~~-W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---~L~g~i-p~~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-PLRFG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---GLRGFI-PNDISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-cccCC-CCCCCCCCcccccccceeeccCCCCceEEEEEECCCC---CccccC-CHHHhCC
Confidence 456678888876 112211 00001 123455 7999999521 13777777776 777766 5667777
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC-CCCCEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL-SKLKIL 186 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L 186 (242)
++|+.|++++| .+.|.+|..+..+++|++|++++|++++.+|..++++++|++|++++|++++.+|..+... .++..+
T Consensus 442 ~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 77777777743 3456677667777777777777777777777777777777777777777777777666543 345566
Q ss_pred EeecCCCc
Q 026163 187 NLSSNFLV 194 (242)
Q Consensus 187 ~L~~N~l~ 194 (242)
++.+|...
T Consensus 521 ~~~~N~~l 528 (623)
T PLN03150 521 NFTDNAGL 528 (623)
T ss_pred EecCCccc
Confidence 66666543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=6.7e-16 Score=134.32 Aligned_cols=139 Identities=24% Similarity=0.258 Sum_probs=59.6
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 179 (242)
...|..+.+|..|.|+.|++ ..+| ..|..+++|+.|+|..|+|.-.---.|.++++|+.|.+..|.+...-...|..
T Consensus 190 ~~~F~~lnsL~tlkLsrNri--ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRI--TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccchheeeecccCcc--cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 33444444444444443333 1232 22444555555555555443111122233333333333333333222223333
Q ss_pred CCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 180 LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 180 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+.++++|+|..|++...-...+.++++|+.|++++|.|...-++.+...++|+.|+|++|+|
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 44444444444444433333444455555555555555544445555555555555555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1e-15 Score=133.23 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=121.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+. .++...|.++++|+.+++..|.. ..+|.......+|+.|+|.+|.|+..-.+.+..++.|
T Consensus 78 ~~t~~LdlsnN---kl~-~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 78 SQTQTLDLSNN---KLS-HIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cceeeeecccc---ccc-cCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 35677888876 443 34466788899999999986555 4678755556678889999988887666778888888
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
+.|||+.|.|+...-..|..-.++++|+|++|+|+..-...|..+.+|..|.|++|+++...+..|+++++|+.|+|..|
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 88888888888555556777778888888888888766777888888888888888888666677778888888888888
Q ss_pred CC
Q 026163 240 VA 241 (242)
Q Consensus 240 ~l 241 (242)
+|
T Consensus 232 ~i 233 (873)
T KOG4194|consen 232 RI 233 (873)
T ss_pred ce
Confidence 76
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=7.8e-16 Score=135.12 Aligned_cols=137 Identities=31% Similarity=0.431 Sum_probs=85.6
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGR 179 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 179 (242)
|..+..+..|+.||+++|.. .+.|..+..-+++-+|++++|+|. .+|. .+-++.-|-+|||++|++. .+|+.+..
T Consensus 96 P~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred Cchhcccccceeeecchhhh--hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 45555666666666665544 345555555556666666666665 3333 2345556666666666665 55555666
Q ss_pred CCCCCEEEeecCCCc-------------------------cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163 180 LSKLKILNLSSNFLV-------------------------GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL 234 (242)
Q Consensus 180 l~~L~~L~L~~N~l~-------------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 234 (242)
+..|++|.|++|.+. ..+|..+..+.+|..+|++.|.+. .+|+.+.++++|+.|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 666666666665431 135556666677777777777776 677777788888888
Q ss_pred eCcCCCCC
Q 026163 235 AMSNKVAI 242 (242)
Q Consensus 235 ~ls~N~lt 242 (242)
+||+|.||
T Consensus 251 NLS~N~it 258 (1255)
T KOG0444|consen 251 NLSGNKIT 258 (1255)
T ss_pred ccCcCcee
Confidence 88888764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=4.5e-15 Score=130.43 Aligned_cols=136 Identities=32% Similarity=0.464 Sum_probs=75.6
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCCcCCcEEEcccCcCCCCCCcCcCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR 179 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 179 (242)
|..++.+.+|+.|.+.+|+.. .+-..+..++.|+.+++..|++.. -+|..+..+..|..|||++|+++ ..|..+..
T Consensus 48 PeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~ 124 (1255)
T KOG0444|consen 48 PEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY 124 (1255)
T ss_pred hHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence 344444444444444444431 223334444455555555554431 24555556666666666666666 55666666
Q ss_pred CCCCCEEEeecCCCcccccc-ccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 180 LSKLKILNLSSNFLVGNIPL-TLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 180 l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
.+++..|+|++|+|. .+|. .+-+++.|-+|||++|++. .+|+-+..+..|++|+|++|++
T Consensus 125 AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 666666666666666 3333 3455666666666666665 4555566666677777777654
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=1.2e-13 Score=126.26 Aligned_cols=106 Identities=39% Similarity=0.700 Sum_probs=81.3
Q ss_pred CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEccc
Q 026163 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214 (242)
Q Consensus 135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 214 (242)
++.|+|++|.+++.+|..++.+++|++|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56777788888777777777788888888888888777777777888888888888888877777777888888888888
Q ss_pred CCCCCCCcccccCC-cCCCEEeCcCCC
Q 026163 215 NSLVGNIPPTLGHL-TQLTTLAMSNKV 240 (242)
Q Consensus 215 N~l~~~~p~~l~~l-~~L~~L~ls~N~ 240 (242)
|.++|.+|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 88877777766653 355677777664
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=3.6e-14 Score=118.45 Aligned_cols=158 Identities=23% Similarity=0.262 Sum_probs=101.4
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCC--
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRL-- 156 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l-- 156 (242)
...+.|+|..| .+ ..||+..|+.+++|++|||+.|+ ++..-|+.|.+++++..|-+.+ |+|+....+.|+++
T Consensus 67 ~~tveirLdqN---~I-~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQN---QI-SSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccC---Cc-ccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 46788888775 44 45768999999999999999655 4556677888888776666555 66653222222222
Q ss_pred ----------------------cCCcEEEcccCcCCCC------------------------------------------
Q 026163 157 ----------------------RNLVRLDLSDNYIGGY------------------------------------------ 172 (242)
Q Consensus 157 ----------------------~~L~~L~Ls~N~l~~~------------------------------------------ 172 (242)
+++..|.+.+|.+...
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 2222222222221100
Q ss_pred -------------------------------------------CC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163 173 -------------------------------------------IP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK 208 (242)
Q Consensus 173 -------------------------------------------~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 208 (242)
.| ..|.++++|+.|+|++|++++.-+..|....+++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 00 1235667788888888888877677777777777
Q ss_pred EEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 209 ILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 209 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
.|.|..|++...-...|.++..|+.|+|.+|+||
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 7777777776544466677777777777777764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=3.2e-15 Score=125.05 Aligned_cols=152 Identities=30% Similarity=0.385 Sum_probs=105.3
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCE-EEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKS-FKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~-L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
-|+.++++.+ .+. ++ |..+..+..+.+ +.++ ++.. +.+|..+..+++|..|++++|-+. .+|..++.+..|
T Consensus 389 ~Vt~VnfskN---qL~-el-Pk~L~~lkelvT~l~ls-nn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L 460 (565)
T KOG0472|consen 389 IVTSVNFSKN---QLC-EL-PKRLVELKELVTDLVLS-NNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL 460 (565)
T ss_pred ceEEEecccc---hHh-hh-hhhhHHHHHHHHHHHhh-cCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh
Confidence 3677777765 322 23 333333333322 3444 3332 456666777888888888877776 677777788788
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
|.|+++.|+|. ..|+.+..+..++.+-.++|++....|..+.++.+|..||+.+|.+. .+|+.++++++|++|++.+|
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence 88888888877 77777777777777777777877655655778888888888888887 67777888888888888888
Q ss_pred CCC
Q 026163 240 VAI 242 (242)
Q Consensus 240 ~lt 242 (242)
+|.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 763
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=8.6e-15 Score=122.52 Aligned_cols=111 Identities=31% Similarity=0.514 Sum_probs=55.0
Q ss_pred CchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEeecCCCccccccccCC
Q 026163 125 IPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG-RLSKLKILNLSSNFLVGNIPLTLCH 203 (242)
Q Consensus 125 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~ 203 (242)
+|+.++.+.+|+.|++..|++. .+| .|.++..|++++++.|+|. .+|.... +++++..||+.+|+++ ..|..+..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 3433444444444444444443 233 3334444444444444443 3333322 4555566666666665 45555555
Q ss_pred CCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 204 LSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 204 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+.+|++||+++|.|+ ..|..++++ .|+.|-+.+|++
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 556666666666665 345555665 566666665553
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1.3e-13 Score=116.27 Aligned_cols=139 Identities=23% Similarity=0.284 Sum_probs=76.0
Q ss_pred cCCC-CCCCEEEecCCCcccc---cCchhhhcCCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC---
Q 026163 104 FSCF-PNLKSFKIHSNYLLSG---SIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY--- 172 (242)
Q Consensus 104 ~~~l-~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~--- 172 (242)
+..+ ++|+.|++++|++..+ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3344 5666666665554211 1223344556666666666666532 222334445677777777766532
Q ss_pred -CCcCcCCCCCCCEEEeecCCCccccccccC-----CCCCCcEEEcccCCCCC----CCcccccCCcCCCEEeCcCCCCC
Q 026163 173 -IPPTLGRLSKLKILNLSSNFLVGNIPLTLC-----HLSKLKILNLSSNSLVG----NIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 173 -~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 223345566677777777766642221111 23567777777777652 22344555567777777777663
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=2.7e-13 Score=104.04 Aligned_cols=127 Identities=27% Similarity=0.360 Sum_probs=49.7
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc-CCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-GRLS 181 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 181 (242)
+.+..++++|++.+|.+ ..+. .+. .+.+|+.|++++|.++. + +.+..+++|++|++++|+|+ .+.+.+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I--~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQI--STIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccc--cccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 34455678899987766 2333 344 57889999999999984 3 35778899999999999998 444444 3688
Q ss_pred CCCEEEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeC
Q 026163 182 KLKILNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAM 236 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~l 236 (242)
+|++|++++|+|... .-..+..+++|++|++.+|+++...- ..+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999998752 12456778999999999999874321 24567888888874
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=7.7e-12 Score=121.88 Aligned_cols=82 Identities=26% Similarity=0.345 Sum_probs=48.4
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.++++++ ...+.+ +.+..+++|++|++++|..+ ..+|..+..+++|++|++++|.....+|..+ ++++|
T Consensus 634 ~~Lk~L~Ls~~---~~l~~i--p~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 634 TGLRNIDLRGS---KNLKEI--PDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred CCCCEEECCCC---CCcCcC--CccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 45566666554 333444 24666777777777765544 3567677777777777777764444555543 45555
Q ss_pred cEEEcccCc
Q 026163 160 VRLDLSDNY 168 (242)
Q Consensus 160 ~~L~Ls~N~ 168 (242)
++|++++|.
T Consensus 707 ~~L~Lsgc~ 715 (1153)
T PLN03210 707 YRLNLSGCS 715 (1153)
T ss_pred CEEeCCCCC
Confidence 555555543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=2.3e-13 Score=114.72 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=114.8
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCC---CCCCEEEecCCCcccc---cCchhhhcC-CCCCEEeccCccCCCC---
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCF---PNLKSFKIHSNYLLSG---SIPSEITAL-SMLQTLELPSSRLTGI--- 148 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l---~~L~~L~l~~~~~~~~---~~p~~~~~l-~~L~~L~l~~n~l~~~--- 148 (242)
..+++.|+++++ .+.+.. +..+..+ ++|++|++++|+.... .+...+..+ ++|++|++++|.+++.
T Consensus 80 ~~~L~~L~l~~~---~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 80 GCGLQELDLSDN---ALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred cCceeEEEccCC---CCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 568999999887 665433 3334344 4499999997765321 223345666 8999999999999843
Q ss_pred -CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCC
Q 026163 149 -IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVG 219 (242)
Q Consensus 149 -~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~ 219 (242)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 334566778999999999998842 233455667999999999998753 34456778999999999999886
Q ss_pred CCccccc-----CCcCCCEEeCcCCCCC
Q 026163 220 NIPPTLG-----HLTQLTTLAMSNKVAI 242 (242)
Q Consensus 220 ~~p~~l~-----~l~~L~~L~ls~N~lt 242 (242)
.....+. ..++|++|++++|.++
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 3332222 2478999999999874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=4.1e-12 Score=117.62 Aligned_cols=142 Identities=24% Similarity=0.396 Sum_probs=81.7
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+. .+ +..+ .++|+.|++++|++ ..+|..+. ++|++|++++|+++ .+|..+. ++|
T Consensus 220 ~nL~~L~Ls~N---~Lt-sL-P~~l--~~~L~~L~Ls~N~L--~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSN---QLT-SI-PATL--PDTIQEMELSINRI--TELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL 285 (754)
T ss_pred cCCCEEECCCC---ccc-cC-Chhh--hccccEEECcCCcc--CcCChhHh--CCCCEEECcCCccC-ccccccC--CCC
Confidence 46788888776 544 33 2222 23577777776554 34565543 36777777777766 4555443 366
Q ss_pred cEEEcccCcCCCCCCcCcC-------------------CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCC
Q 026163 160 VRLDLSDNYIGGYIPPTLG-------------------RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~-------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 220 (242)
++|++++|+++. +|..+. -.++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .
T Consensus 286 ~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~ 360 (754)
T PRK15370 286 RYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-V 360 (754)
T ss_pred cEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-c
Confidence 666666666652 332211 11356666666666653 444332 56777777777776 4
Q ss_pred CcccccCCcCCCEEeCcCCCCC
Q 026163 221 IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 221 ~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|..+. ++|++|++++|+|+
T Consensus 361 LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 361 LPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CChhhc--CCcCEEECCCCcCC
Confidence 554442 46777777777653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=6.5e-12 Score=116.29 Aligned_cols=143 Identities=29% Similarity=0.401 Sum_probs=103.6
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
...++.|+++++ .+. .+ +..+ .++|++|++++|++ ..+|..+. ++|+.|++++|++. .+|..+. .+
T Consensus 198 p~~L~~L~Ls~N---~Lt-sL-P~~l--~~nL~~L~Ls~N~L--tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~ 263 (754)
T PRK15370 198 PEQITTLILDNN---ELK-SL-PENL--QGNIKTLYANSNQL--TSIPATLP--DTIQEMELSINRIT-ELPERLP--SA 263 (754)
T ss_pred ccCCcEEEecCC---CCC-cC-Chhh--ccCCCEEECCCCcc--ccCChhhh--ccccEEECcCCccC-cCChhHh--CC
Confidence 346889999888 666 34 3333 35899999997765 35777553 47999999999998 6777664 58
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccC-------------------CCCCCcEEEcccCCCCC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-------------------HLSKLKILNLSSNSLVG 219 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-------------------~l~~L~~L~L~~N~l~~ 219 (242)
|++|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. -.++|+.|++++|.+++
T Consensus 264 L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 264 LQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339 (754)
T ss_pred CCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence 999999999999 5777654 589999999999884 443221 11456667777776663
Q ss_pred CCcccccCCcCCCEEeCcCCCCC
Q 026163 220 NIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 220 ~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|..+. ++|+.|++++|+|+
T Consensus 340 -LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 340 -LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred -CChhhc--CcccEEECCCCCCC
Confidence 554442 57888888888764
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=1.8e-12 Score=99.46 Aligned_cols=109 Identities=30% Similarity=0.387 Sum_probs=42.6
Q ss_pred hhcCCCCCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccccccc-CCCCC
Q 026163 129 ITALSMLQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTL-CHLSK 206 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~ 206 (242)
+.+..++++|++.+|.|+. + +.++ .+.+|+.|++++|.|+. + +.+..+++|++|++++|+++. +...+ ..+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4566689999999999983 3 3455 58899999999999983 3 368889999999999999995 44344 46899
Q ss_pred CcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163 207 LKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 207 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~lt 242 (242)
|+.|++++|+|...-. ..+..+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999999975322 56778999999999999874
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=9.6e-12 Score=114.92 Aligned_cols=99 Identities=29% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCCEEeccCccCCCCCChhccC-----------------CcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163 134 MLQTLELPSSRLTGIIPSEMGR-----------------LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN 196 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 196 (242)
+|++|++++|++++ +|..... ..+|+.|++++|+++ .+|.. .++|+.|++++|++++
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss- 416 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS- 416 (788)
T ss_pred ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-
Confidence 56777777777663 3322111 134666677777666 34432 2467777888887773
Q ss_pred cccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 197 IPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 197 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|+|+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 5543 246788888999988 68888999999999999999985
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=1.8e-13 Score=124.59 Aligned_cols=129 Identities=29% Similarity=0.458 Sum_probs=101.3
Q ss_pred CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
++.|+.|++.+|......+| .+.++++|++|+|++|++. .+|+ .+.+++.|++|++|+|+++ .+|..+.+++.|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchh-hhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 34567777775544443444 4788899999999999998 4554 5688999999999999998 88888999999999
Q ss_pred EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
|...+|++. ..| .+..++.|+.+|++.|.++...-..-...++|++||+++|.
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999988 677 78889999999999999875433333333789999999985
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=6.3e-11 Score=115.59 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=100.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|++.++ .+. .+ +..+..+++|++|++++++.+ +.+|. +..+++|++|++++|.....+|..+.++++|
T Consensus 611 ~~L~~L~L~~s---~l~-~L-~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 611 ENLVKLQMQGS---KLE-KL-WDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred cCCcEEECcCc---ccc-cc-ccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 34556666554 433 33 455678889999999866544 45664 7788999999999987666889999999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc--------------------cccccc------------------
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG--------------------NIPLTL------------------ 201 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l------------------ 201 (242)
++|++++|.....+|..+ ++++|++|++++|.... .+|..+
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 999999875444666544 45555555555543221 122111
Q ss_pred ------------CCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 202 ------------CHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 202 ------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
...++|+.|++++|...+.+|..++++++|+.|++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 01235666677777666667777777777888877765
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=6.2e-13 Score=121.19 Aligned_cols=150 Identities=26% Similarity=0.313 Sum_probs=119.3
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchh-hhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.++.|.+.+| .+.... .+.+.++++|+.|+|++|.+ +.+|+. +.++..|++|++|+|+++ .+|..+..+..|
T Consensus 360 ~Lq~LylanN---~Ltd~c-~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 360 ALQELYLANN---HLTDSC-FPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred HHHHHHHhcC---cccccc-hhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 3555666666 777776 78899999999999998776 567875 788999999999999999 789999999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|....|++. .+| .+..++.|+.+|++.|.++...-......++|++||+++|.-...--+.+..++++...+++-|
T Consensus 433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999999998 778 8999999999999999998643323333489999999999843333345555666665555444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=5e-13 Score=116.28 Aligned_cols=134 Identities=31% Similarity=0.501 Sum_probs=106.0
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 180 (242)
+..+.++..|++++++.|.+ ..+|..+..++ |+.|.+++|+++ .+|..++...+|..||.+.|++. .+|..++.+
T Consensus 114 p~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred chhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 66777788888888886655 45676666655 788888888887 77788887788888888888887 777788888
Q ss_pred CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
.+|+.|++..|++. .+|..+..++ |..||++.|++. .+|-.|.+++.|++|-|.+|.++
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 88888888888887 5677777554 888999999988 78888889999999999888764
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=7.7e-13 Score=107.41 Aligned_cols=133 Identities=24% Similarity=0.284 Sum_probs=107.3
Q ss_pred CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
.....+.|+++|+++|.+ ..+.++..-.|.++.|++++|.+. .+ ..+..+++|+.||+++|.++ .+-.+-.++.+
T Consensus 279 ~~dTWq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccch--hhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 344567899999998776 567777778899999999999998 33 34888999999999999987 55555567889
Q ss_pred CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC-cccccCCcCCCEEeCcCCCCC
Q 026163 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI-PPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++|.|++|.+.. -..++++-+|..||+++|+|...- -..++++|.|+++.+.+|++.
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999999998873 246778888999999999997421 257889999999999999874
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1.3e-10 Score=107.61 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=39.0
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
++|++|++++|++ + .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|. ..++|+.|+
T Consensus 242 ~~Lk~LdLs~N~L-t-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~Ld 308 (788)
T PRK15387 242 PELRTLEVSGNQL-T-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELS 308 (788)
T ss_pred CCCcEEEecCCcc-C-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeE
Confidence 4555555554433 1 23321 234555555555554 23321 234556666666666 3443 235677777
Q ss_pred eecCCCcc
Q 026163 188 LSSNFLVG 195 (242)
Q Consensus 188 L~~N~l~~ 195 (242)
+++|++++
T Consensus 309 LS~N~L~~ 316 (788)
T PRK15387 309 VSDNQLAS 316 (788)
T ss_pred CCCCcccc
Confidence 77777774
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=4.4e-11 Score=75.95 Aligned_cols=59 Identities=34% Similarity=0.452 Sum_probs=28.5
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554443333344445555555555555543333444555555555555554
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=6.9e-11 Score=75.04 Aligned_cols=60 Identities=38% Similarity=0.538 Sum_probs=34.1
Q ss_pred CCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217 (242)
Q Consensus 158 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 217 (242)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544444555566666666666666554455556666666666666543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=1.2e-12 Score=113.91 Aligned_cols=148 Identities=29% Similarity=0.396 Sum_probs=123.3
Q ss_pred eEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcE
Q 026163 82 VIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVR 161 (242)
Q Consensus 82 v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 161 (242)
.+..+++.+ .+. ++ +..++.|..|+.+.+..|.+ -.+|..+.++..|+++|++.|+++ .+|..++.++ |+.
T Consensus 77 t~~aDlsrN---R~~-el-p~~~~~f~~Le~liLy~n~~--r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 77 TVFADLSRN---RFS-EL-PEEACAFVSLESLILYHNCI--RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred hhhhhcccc---ccc-cC-chHHHHHHHHHHHHHHhccc--eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 344555554 333 44 66777777888888876666 568888999999999999999999 7888887764 899
Q ss_pred EEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 162 LDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 162 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
|-+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+..++ |..||+++|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCce
Confidence 999999998 88999999999999999999998 67889999999999999999998 5777777765 99999999997
Q ss_pred C
Q 026163 242 I 242 (242)
Q Consensus 242 t 242 (242)
+
T Consensus 224 s 224 (722)
T KOG0532|consen 224 S 224 (722)
T ss_pred e
Confidence 4
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=5.5e-11 Score=103.47 Aligned_cols=149 Identities=34% Similarity=0.495 Sum_probs=89.8
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCC-CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFP-NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.++.+++.++ .+. .+ +.....+. +|+.|++++|.+ ..+|..+..+++|+.|++++|+++ .+|...+..+.|
T Consensus 117 ~l~~L~l~~n---~i~-~i-~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 117 NLTSLDLDNN---NIT-DI-PPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred ceeEEecCCc---ccc-cC-ccccccchhhcccccccccch--hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 4666666655 322 23 33344443 778888876665 445556777888888888888877 555555567777
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC-----------------------CccccccccCCCCCCcEEEcccCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF-----------------------LVGNIPLTLCHLSKLKILNLSSNS 216 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-----------------------l~~~~p~~l~~l~~L~~L~L~~N~ 216 (242)
+.|++++|+++ .+|..+.....|+++.+++|. +. ..+..++.++.+++|++++|.
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence 77777777776 555544444456666666663 22 113344555566666666666
Q ss_pred CCCCCcccccCCcCCCEEeCcCCCC
Q 026163 217 LVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 217 l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++ .++. ++.+.+++.|++++|.+
T Consensus 267 i~-~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 IS-SISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cc-cccc-ccccCccCEEeccCccc
Confidence 65 2333 56666666666666654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=5.9e-11 Score=103.27 Aligned_cols=133 Identities=32% Similarity=0.503 Sum_probs=97.5
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 160 (242)
+++.++++++ .+.. + +..+..+++|+.|++++|++ ..+|......+.|+.|++++|+++ .+|........|+
T Consensus 141 nL~~L~l~~N---~i~~-l-~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDN---KIES-L-PSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212 (394)
T ss_pred hccccccccc---chhh-h-hhhhhccccccccccCCchh--hhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh
Confidence 6777887776 4332 2 24678889999999997776 456665557888888888888887 5565544445566
Q ss_pred EEEcccC-----------------------cCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163 161 RLDLSDN-----------------------YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217 (242)
Q Consensus 161 ~L~Ls~N-----------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 217 (242)
++.+++| ++. ..+..++.++++++|++++|.++. ++. ++.+.+++.|++++|.+
T Consensus 213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence 6666666 332 224567788899999999999994 444 88999999999999999
Q ss_pred CCCCccc
Q 026163 218 VGNIPPT 224 (242)
Q Consensus 218 ~~~~p~~ 224 (242)
....|..
T Consensus 290 ~~~~~~~ 296 (394)
T COG4886 290 SNALPLI 296 (394)
T ss_pred cccchhh
Confidence 8665543
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.3e-11 Score=100.01 Aligned_cols=134 Identities=25% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--cCcCCCCCCC
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--PTLGRLSKLK 184 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~ 184 (242)
+++|++|.++.|++....+......+|.|+.|++.+|............+..|+.|||++|++- ..+ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 3344444444443332223333334444444444444211111112223344555555555543 222 2244455555
Q ss_pred EEEeecCCCccc-cccc-----cCCCCCCcEEEcccCCCCCCC-cccccCCcCCCEEeCcCCCC
Q 026163 185 ILNLSSNFLVGN-IPLT-----LCHLSKLKILNLSSNSLVGNI-PPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 185 ~L~L~~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~l 241 (242)
.|+++.+.+... .|+. ...+++|++|++..|++.... -..+..+++|+.|.+..|.|
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 555555555431 1111 233455555555555553211 12233344445554444443
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.1e-11 Score=100.10 Aligned_cols=137 Identities=26% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCC-CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI-IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
..||+|+.|+++.|......-...-..+++|+.|.++.|.++-. +......+|+|+.|++..|...........-+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 34555555555544432211111112345555555555555511 11223456777777777774322333334456789
Q ss_pred CEEEeecCCCcccc-ccccCCCCCCcEEEcccCCCCCC-Cccc-----ccCCcCCCEEeCcCCCC
Q 026163 184 KILNLSSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGN-IPPT-----LGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 184 ~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~-~p~~-----l~~l~~L~~L~ls~N~l 241 (242)
+.|+|++|.+.... -...+.++.|+.|+++.+.+... .|+. ...+++|++|+++.|+|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 99999999887432 13567889999999999998742 2332 35678999999999987
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.3e-10 Score=94.70 Aligned_cols=104 Identities=29% Similarity=0.339 Sum_probs=82.4
Q ss_pred CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEE
Q 026163 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILN 211 (242)
Q Consensus 132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 211 (242)
...|+++|+++|.|+ .+...+.-.|.++.|++++|.+. .+ +.+..+++|+.|+|++|.++ .+...-.++-+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345888999999888 67777777889999999999987 33 34888889999999999887 4444555677888899
Q ss_pred cccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 212 LSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 212 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+++|.+.. -..++++-+|..||+++|+|
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccch
Confidence 99998863 34577888899999999987
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=6.7e-11 Score=99.18 Aligned_cols=130 Identities=26% Similarity=0.338 Sum_probs=111.0
Q ss_pred CCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEccc-CcCCCCCCcCcCCCCCCCEE
Q 026163 109 NLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD-NYIGGYIPPTLGRLSKLKIL 186 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 186 (242)
.-..++|..|.+ ..+|+ .|+.+++|+.|||++|+|+.+-|+.|.+++++..|-+-+ |+|+......|.++..++.|
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456788886766 45654 599999999999999999999999999999988877655 99996666779999999999
Q ss_pred EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcc-cccCCcCCCEEeCcCCCC
Q 026163 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ls~N~l 241 (242)
.+.-|++.-...+.|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 99999999777778999999999999999998 5554 788899999999888874
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=2.2e-08 Score=94.54 Aligned_cols=129 Identities=31% Similarity=0.425 Sum_probs=90.7
Q ss_pred CCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 107 FPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
.++|++|-+..|...-..++ ..|..++.|++||+++|.--+.+|..++++-+|++|++++..+. .+|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 34677887776542112333 34677888999999887766788888888888999999888888 88888888888889
Q ss_pred EEeecCCCccccccccCCCCCCcEEEcccCCCC--CCCcccccCCcCCCEEeC
Q 026163 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV--GNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~l 236 (242)
|++..+.-...+|.....+++|++|.+..-... ...-..+..+..|+.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888887765566666677888888887655422 122233445555555443
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.65 E-value=3.8e-10 Score=101.18 Aligned_cols=126 Identities=28% Similarity=0.298 Sum_probs=91.7
Q ss_pred CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 188 (242)
.|.+.+++.|.. -.+...+.-++.++.|+|++|+++.. +.+..+++|++|||++|.++ .+|..-..-..|+.|.+
T Consensus 165 ~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 345555554433 23445566678899999999999854 37788899999999999998 55543222234999999
Q ss_pred ecCCCccccccccCCCCCCcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163 189 SSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 189 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l 241 (242)
.+|.++.. ..+.++.+|+.||+++|-+.+.-- ..++.+..|+.|+|.+|++
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99988832 356788899999999998875322 3466778889999999976
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.2e-09 Score=96.43 Aligned_cols=102 Identities=32% Similarity=0.376 Sum_probs=82.6
Q ss_pred CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS 213 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 213 (242)
.|...+.++|.+. .+...+.-++.++.|+|++|+++.. +.+..++.|++|||++|.++ .+|..-..-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4777788888887 6667777789999999999999844 37889999999999999998 566432222359999999
Q ss_pred cCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 214 SNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 214 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+|.++.. ..+.++++|+.||+++|-|
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhh
Confidence 9999732 4578999999999999965
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.56 E-value=2.1e-09 Score=77.97 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=49.2
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
+....+|+..++++|.+ ..+|+.|. .++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|+-+..+.+
T Consensus 49 l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 33444555556664444 34555443 3445666666666666 45555666666666666666665 44555555666
Q ss_pred CCEEEeecCCCc
Q 026163 183 LKILNLSSNFLV 194 (242)
Q Consensus 183 L~~L~L~~N~l~ 194 (242)
+..|+..+|.+.
T Consensus 125 l~~Lds~~na~~ 136 (177)
T KOG4579|consen 125 LDMLDSPENARA 136 (177)
T ss_pred HHHhcCCCCccc
Confidence 666666666554
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=5.5e-08 Score=91.92 Aligned_cols=131 Identities=27% Similarity=0.352 Sum_probs=105.7
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc--CCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR--LTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
.......+...+.++.. ..++.. ...++|++|-+..|. +....+..|..++.|++||+++|.-.+.+|..++.+-
T Consensus 519 ~~~~~~~rr~s~~~~~~--~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKI--EHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred ccchhheeEEEEeccch--hhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 33446677777775554 233432 345589999999996 5544455678899999999999987779999999999
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
+|++|++++..++ .+|..++++.+|.+|++..+.....+|.....+++|++|.+..
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 9999999999999 7999999999999999999987766777777799999998754
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.4e-08 Score=89.00 Aligned_cols=108 Identities=31% Similarity=0.401 Sum_probs=48.3
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|+.+++.+|.+ ..+...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.|+. ...+..+++|
T Consensus 91 l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccch--hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhh
Confidence 44455555555554333 12222234455555555555555432 223344445555555555541 1233334555
Q ss_pred CEEEeecCCCccccccc-cCCCCCCcEEEcccCCCC
Q 026163 184 KILNLSSNFLVGNIPLT-LCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~ 218 (242)
+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 555555555542211 1 244445555555555543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.7e-08 Score=88.56 Aligned_cols=107 Identities=35% Similarity=0.412 Sum_probs=53.2
Q ss_pred hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK 208 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 208 (242)
+..+++|+.|++.+|++.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++. + ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 4455555555665555552 222244555556666666655522 234444455555566655552 1 2334455555
Q ss_pred EEEcccCCCCCCCccc-ccCCcCCCEEeCcCCCC
Q 026163 209 ILNLSSNSLVGNIPPT-LGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 209 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l 241 (242)
.+++++|.+...-+ . ...+.+++.+++.+|.+
T Consensus 166 ~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN-DELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhh-hhhhhccchHHHhccCCch
Confidence 55555555552211 1 34455555555555543
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=2.5e-08 Score=82.68 Aligned_cols=89 Identities=20% Similarity=0.302 Sum_probs=39.7
Q ss_pred ccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCcccccccc-----CCCCCCcEEEcccCCCCCC---
Q 026163 153 MGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGNIPLTL-----CHLSKLKILNLSSNSLVGN--- 220 (242)
Q Consensus 153 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~--- 220 (242)
+..+++|+.|||.+|.++.. +...+..+++|+.|++++|.++......+ ...|+|+.+.+.+|.|+..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 34445555555555554421 12233444455555555555543221111 1235555555555555421
Q ss_pred -CcccccCCcCCCEEeCcCCCC
Q 026163 221 -IPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 221 -~p~~l~~l~~L~~L~ls~N~l 241 (242)
+...+...+.|..|++++|++
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 112233445555555555554
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.43 E-value=8.2e-08 Score=88.59 Aligned_cols=132 Identities=23% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccCCCC-CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRLTGI-IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
.+|++|++++...+...-|..++ .+|.|+.|.+++-.+... +-....++++|..||+|+..++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 34666666655544444444443 366666666666555321 122234566666666666666522 45566666666
Q ss_pred EEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCC--c----ccccCCcCCCEEeCcCCCC
Q 026163 186 LNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNI--P----PTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 186 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~ls~N~l 241 (242)
|.+.+=.+.. ..-..+..+++|+.||+|........ . +.-..+|+|+.||.|++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 6665544442 11224455666666666665543211 1 1122456666666666543
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=4e-07 Score=53.44 Aligned_cols=37 Identities=38% Similarity=0.603 Sum_probs=28.7
Q ss_pred CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 46666888888888888888887
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.2e-08 Score=72.79 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=80.8
Q ss_pred CCEEEecCCCcccccCchh---hhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 110 LKSFKIHSNYLLSGSIPSE---ITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 110 L~~L~l~~~~~~~~~~p~~---~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
+..++++.+.+ +.+++. +.....|+..++++|.+. .+|..| ..++.++.|++++|+++ .+|.++..++.|+.
T Consensus 29 ~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 44556665554 334444 445566777899999998 455555 55678999999999998 78888999999999
Q ss_pred EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222 (242)
Q Consensus 186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 222 (242)
|+++.|.+. ..|..+..+.++..|+..+|.+. .+|
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 999999988 56777777888888988888876 444
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.36 E-value=8e-07 Score=68.75 Aligned_cols=102 Identities=25% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccc-ccccCCCCCCcEEEc
Q 026163 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI-PLTLCHLSKLKILNL 212 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L 212 (242)
....+|+++|.+... ..|..++.|.+|.+++|+|+..-|.--..+++|+.|.+.+|.|.... -..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666665421 34555666666666666666444444444556666666666665211 123455666666666
Q ss_pred ccCCCCCCCc---ccccCCcCCCEEeCc
Q 026163 213 SSNSLVGNIP---PTLGHLTQLTTLAMS 237 (242)
Q Consensus 213 ~~N~l~~~~p---~~l~~l~~L~~L~ls 237 (242)
-+|+++..-- -.+..+|+|+.||++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehh
Confidence 6666653211 234566666666654
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=9.4e-08 Score=79.31 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCcc----cccc
Q 026163 132 LSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVG----NIPL 199 (242)
Q Consensus 132 l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~ 199 (242)
-++|+++...+|++... +...|...+.|+.+.++.|.|... +...+..+++|+.|||.+|.++. .+.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45566666666666532 112344556777777777766421 11235567788888888887763 2334
Q ss_pred ccCCCCCCcEEEcccCCCCCCCcccc-----cCCcCCCEEeCcCCCCC
Q 026163 200 TLCHLSKLKILNLSSNSLVGNIPPTL-----GHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 200 ~l~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~ls~N~lt 242 (242)
.+..++.|+.|++++|.+...-...+ ...|+|+.|.+.+|.|+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 56667778888888887765433222 24577888888888764
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=1.1e-06 Score=51.58 Aligned_cols=38 Identities=47% Similarity=0.680 Sum_probs=27.7
Q ss_pred cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc
Q 026163 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG 195 (242)
Q Consensus 157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 195 (242)
++|++|++++|+|+ .+|+.+.++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46788888888887 566667888888888888888773
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.18 E-value=5.3e-07 Score=72.20 Aligned_cols=87 Identities=31% Similarity=0.386 Sum_probs=45.3
Q ss_pred hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccC--cCCCCCCcCcCCCCCCCEEEeecCCCccccccc---cCC
Q 026163 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDN--YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLT---LCH 203 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~ 203 (242)
...+..|+.|.+.+..++.. ..+..+++|++|.++.| ++.+.++.....+++|+++++++|+++. ++. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 33444555555555555421 23445566666666666 4444444444455666666666666652 222 334
Q ss_pred CCCCcEEEcccCCCCC
Q 026163 204 LSKLKILNLSSNSLVG 219 (242)
Q Consensus 204 l~~L~~L~L~~N~l~~ 219 (242)
+++|..|++.+|..+.
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 4455566666665543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=5.9e-06 Score=64.01 Aligned_cols=104 Identities=25% Similarity=0.265 Sum_probs=77.6
Q ss_pred CCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163 135 LQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS 213 (242)
Q Consensus 135 L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 213 (242)
-+.+++.+.++.. + ..++ -..+...+|+++|++. .-+.|..+++|.+|.+++|+|+..-|.--..+++|..|.+.
T Consensus 21 e~e~~LR~lkip~-i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-I-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccc-h-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4556666666542 1 1122 2356889999999986 23467889999999999999997666555567899999999
Q ss_pred cCCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163 214 SNSLVGNIP-PTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 214 ~N~l~~~~p-~~l~~l~~L~~L~ls~N~lt 242 (242)
+|.|..... +.+..+|+|++|.+-+|+++
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 999874221 34678899999999999864
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=6.3e-07 Score=82.84 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|++++.. .+....+...-..||.|+.|.+.+-......+.....++++|+.||+|+++++.. ..++.+++|
T Consensus 122 ~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 456777776641 2222221233456899999999955544444444567899999999999999844 778999999
Q ss_pred cEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCcccc--c----cccCCCCCCcEEEcccCCCCCCCc
Q 026163 160 VRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNI--P----LTLCHLSKLKILNLSSNSLVGNIP 222 (242)
Q Consensus 160 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~L~~N~l~~~~p 222 (242)
+.|.+.+=.+.. ..-..+-++++|+.||+|..+..... . +.-..+|+|+.||.+++.+.+.+-
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 999998877763 22234668999999999987655321 1 123458999999999988875433
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.9e-07 Score=75.26 Aligned_cols=60 Identities=27% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCCCCCEEEeecC-CCccccccccCCCCCCcEEEcccCCCCCCCccc---ccCCcCCCEEeCcCC
Q 026163 178 GRLSKLKILNLSSN-FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT---LGHLTQLTTLAMSNK 239 (242)
Q Consensus 178 ~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~ls~N 239 (242)
.++++|.+|||++| .++......|.+++.|++|.++.|.. .+|+. +...|+|.+||+.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 46788899998876 45544455677888899999988875 35543 456788888887653
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=0.00012 Score=53.01 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=67.3
Q ss_pred eCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC
Q 026163 99 LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178 (242)
Q Consensus 99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 178 (242)
++...|...++|+.+.+.. .. ...-...|..+++|+.+.+..+ +...-...|.++++++.+.+.+ .+.......+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-Ce-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 4466788888899988873 33 2222344778888999998875 6644445677887899999976 44434455677
Q ss_pred CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC
Q 026163 179 RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT 232 (242)
Q Consensus 179 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 232 (242)
.+++|+.+.+..+ ++......|.+. +|+.+.+.. .+.......+.++++|+
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 8889999998765 554445567776 889888876 34434446677776664
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=1.5e-05 Score=64.70 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=17.3
Q ss_pred CCCCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCC
Q 026163 203 HLSKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 203 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N 239 (242)
.+.+|+.||+.+|-++-. +...+..++.|+.|.+.++
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 345555555555555421 1123334444555555444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=8.9e-05 Score=64.19 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=46.4
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCC-CCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCCCChhccCCc
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFP-NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGIIPSEMGRLR 157 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~ 157 (242)
...+.|+++++ .+.. + | .+| +|++|.+++++.+ ..+|..+ .++|++|++++| .+. .+|.
T Consensus 52 ~~l~~L~Is~c---~L~s-L-P----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------ 112 (426)
T PRK15386 52 RASGRLYIKDC---DIES-L-P----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE------ 112 (426)
T ss_pred cCCCEEEeCCC---CCcc-c-C----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc------
Confidence 45778888876 4332 2 1 233 6999999876665 3556544 258999999998 554 4553
Q ss_pred CCcEEEcccCcC
Q 026163 158 NLVRLDLSDNYI 169 (242)
Q Consensus 158 ~L~~L~Ls~N~l 169 (242)
+|+.|+++.+..
T Consensus 113 sLe~L~L~~n~~ 124 (426)
T PRK15386 113 SVRSLEIKGSAT 124 (426)
T ss_pred ccceEEeCCCCC
Confidence 466777766553
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=7.9e-06 Score=67.01 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=34.1
Q ss_pred ccceEe--CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc
Q 026163 71 WTGIRC--NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS 143 (242)
Q Consensus 71 w~gv~c--~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n 143 (242)
|..|.| ....+++.|+++.+ .+...|. .....+.+|++|-+.+...-.......+..+|.+++|+++.|
T Consensus 86 WseI~~ile~lP~l~~LNls~N---~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCN---SLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHHHHhcCccceEeeccCC---cCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 544444 34556666666666 4444431 111344566666665433322222333445566666666665
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=9e-07 Score=72.42 Aligned_cols=131 Identities=24% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCc-CCCC-CCcCcCCCCCCCEE
Q 026163 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY-IGGY-IPPTLGRLSKLKIL 186 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L 186 (242)
.|+++|++..++....+...+..+.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 478888885555433444456778888888888888887766677777778888877653 3311 11124566677777
Q ss_pred EeecCCCccccc-----------------------------cccCCCCCCcEEEcccCCC-CCCCcccccCCcCCCEEeC
Q 026163 187 NLSSNFLVGNIP-----------------------------LTLCHLSKLKILNLSSNSL-VGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 187 ~L~~N~l~~~~p-----------------------------~~l~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~l 236 (242)
+++.+.+..... .-..++|+|.+|||++|.. +......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777665542111 1123567777788777653 3333345667777777777
Q ss_pred cCC
Q 026163 237 SNK 239 (242)
Q Consensus 237 s~N 239 (242)
+.+
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 654
No 60
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.64 E-value=6e-05 Score=43.92 Aligned_cols=30 Identities=40% Similarity=0.939 Sum_probs=17.8
Q ss_pred HHHHHHHHh------------cCCCCCCCCCCCCCCCCCCcccceEeC
Q 026163 42 QLEREALLI------------TGWWYDNWATSGNYTSDHCKWTGIRCN 77 (242)
Q Consensus 42 ~~~~~~l~~------------~~~w~~~~~~~~~~~~~~C~w~gv~c~ 77 (242)
++|++||+. +.+|.. .. ..++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~----~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP----SS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T----T----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC----cC--CCCCeeeccEEeC
Confidence 567888876 234443 11 3799999999995
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00026 Score=61.32 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=61.4
Q ss_pred CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT 146 (242)
Q Consensus 67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 146 (242)
+.|.+..+. .-...++.|.+.++ .-...+ +..+ .++|++|++++|..+. .+|. .|+.|++..+...
T Consensus 60 s~c~L~sLP-~LP~sLtsL~Lsnc---~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~ 125 (426)
T PRK15386 60 KDCDIESLP-VLPNELTEITIENC---NNLTTL-PGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATD 125 (426)
T ss_pred CCCCCcccC-CCCCCCcEEEccCC---CCcccC-Cchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCc
Confidence 345444443 33446788888765 332333 2222 2478888888663332 3443 4666777665543
Q ss_pred --CCCChhccCCcCCcEEEcccCcCC--CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163 147 --GIIPSEMGRLRNLVRLDLSDNYIG--GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215 (242)
Q Consensus 147 --~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 215 (242)
+.+|. +|+.|.+.+++.. ...|.. -.++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 126 ~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 126 SIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 12332 3555555432211 011111 1145677777766654 3343332 46667776655
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=5.8e-05 Score=60.70 Aligned_cols=92 Identities=25% Similarity=0.277 Sum_probs=67.0
Q ss_pred CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecC--CCccccccccCCCCCCcEEEcccCCCCCC-Ccccc
Q 026163 149 IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN--FLVGNIPLTLCHLSKLKILNLSSNSLVGN-IPPTL 225 (242)
Q Consensus 149 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l 225 (242)
+....-.+..|+.+.+.+..++.. ..+-.+++|++|.++.| ++.+.++.....+|+|+++++++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444445567788888887777622 35667899999999999 66666665666779999999999999731 11335
Q ss_pred cCCcCCCEEeCcCCCCC
Q 026163 226 GHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 226 ~~l~~L~~L~ls~N~lt 242 (242)
..+++|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 56778889999888643
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=2.3e-06 Score=69.45 Aligned_cols=83 Identities=29% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccc-ccccCCCCCCcEEEc
Q 026163 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNI-PLTLCHLSKLKILNL 212 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L 212 (242)
+.+.|+.-++.++++ .....|+.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.+.- -..+.++|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344444444444422 2223444444444444444421 12344444555555555444210 112344555555555
Q ss_pred ccCCCCCC
Q 026163 213 SSNSLVGN 220 (242)
Q Consensus 213 ~~N~l~~~ 220 (242)
..|+-.|.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 55554443
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=3.2e-05 Score=63.52 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=34.6
Q ss_pred CCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc-cccccCCCCCCc
Q 026163 132 LSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN-IPLTLCHLSKLK 208 (242)
Q Consensus 132 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~ 208 (242)
.+.++.+|+.+|.+++- +...+.++|.|++|+++.|++...+-..-....+|+.|-|.+..+... .-..+..+|+++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34455555555555421 122234455555555555554422211112333445555544444321 112233444444
Q ss_pred EEEcccC
Q 026163 209 ILNLSSN 215 (242)
Q Consensus 209 ~L~L~~N 215 (242)
.|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 4444444
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=0.0001 Score=59.85 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=81.2
Q ss_pred CCeEEEEecccCCCCceee----eCCCCcCCCCCCCEEEecCCCccccc----Cc-------hhhhcCCCCCEEeccCcc
Q 026163 80 GSVIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSGS----IP-------SEITALSMLQTLELPSSR 144 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~~~----~p-------~~~~~l~~L~~L~l~~n~ 144 (242)
..++.+++++| .+..+ + ...+.+-.+|+..++++ .++|. ++ +.+.++|+|+..++|.|.
T Consensus 30 d~~~evdLSGN---tigtEA~e~l-~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 30 DELVEVDLSGN---TIGTEAMEEL-CNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred cceeEEeccCC---cccHHHHHHH-HHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 35666777665 33221 2 23344555666666652 22232 12 223456777777777777
Q ss_pred CCCCCChh----ccCCcCCcEEEcccCcCCCCCCcC-------------cCCCCCCCEEEeecCCCccccc----cccCC
Q 026163 145 LTGIIPSE----MGRLRNLVRLDLSDNYIGGYIPPT-------------LGRLSKLKILNLSSNFLVGNIP----LTLCH 203 (242)
Q Consensus 145 l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~L~~N~l~~~~p----~~l~~ 203 (242)
|....|.. ++.-+.|++|.+++|.+...--.- ..+-|.|+......|++..... ..+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 66555543 344566777777777654221111 1234567777777776653111 11222
Q ss_pred CCCCcEEEcccCCCCCCC-----cccccCCcCCCEEeCcCCCCC
Q 026163 204 LSKLKILNLSSNSLVGNI-----PPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 204 l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~ls~N~lt 242 (242)
-..|+.+.+..|.|.-.. -..+..+.+|+.||+.+|-||
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 346667777777664211 112234566777777777654
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.0013 Score=47.52 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=65.8
Q ss_pred hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
.|.++++|+.+.+.. .+...-...|.++.+|+.+.+..+ +.......+..+++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 477888999999985 566455667888889999999886 6645556788888999999976 5543445567889999
Q ss_pred cEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
+.+++..+ +.......+.+. +|+.+.+..+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 99999776 553334556666 8888887653
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=2e-05 Score=64.14 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=39.7
Q ss_pred hcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--cCcCCCCCCCEEEeecCCCcccccc-----ccC
Q 026163 130 TALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--PTLGRLSKLKILNLSSNFLVGNIPL-----TLC 202 (242)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~ 202 (242)
..++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|.. +. ..+.++++|+.|+|..|.-.+.-+. .+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 3455556666666655532 234455556666666665542 11 2345556666666666555443222 233
Q ss_pred CCCCCcEEE
Q 026163 203 HLSKLKILN 211 (242)
Q Consensus 203 ~l~~L~~L~ 211 (242)
-+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 455555554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0023 Score=31.34 Aligned_cols=18 Identities=44% Similarity=0.785 Sum_probs=8.3
Q ss_pred CcEEEcccCCCCCCCcccc
Q 026163 207 LKILNLSSNSLVGNIPPTL 225 (242)
Q Consensus 207 L~~L~L~~N~l~~~~p~~l 225 (242)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.66 E-value=0.00014 Score=57.83 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=75.5
Q ss_pred hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
.+..+...+.||++.|++. .+-..|.-++.+..|+++.|++. ..|..++....++.+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3677888999999999887 45566777888999999999998 78888888888899999988887 788899999999
Q ss_pred cEEEcccCCCC
Q 026163 208 KILNLSSNSLV 218 (242)
Q Consensus 208 ~~L~L~~N~l~ 218 (242)
+++++-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999988865
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.61 E-value=0.0002 Score=56.95 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=79.1
Q ss_pred eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163 98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177 (242)
Q Consensus 98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 177 (242)
++|...+..+...+.||++.|... .+-..|.-++.+..|+++.|++. ..|.++++...++.+++..|..+ ..|.++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 444567788899999999976552 23445777889999999999998 78999999999999999999988 889999
Q ss_pred CCCCCCCEEEeecCCCcc
Q 026163 178 GRLSKLKILNLSSNFLVG 195 (242)
Q Consensus 178 ~~l~~L~~L~L~~N~l~~ 195 (242)
+..+.++++++-+|.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 999999999999998763
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.16 E-value=0.029 Score=25.48 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=2.5
Q ss_pred EEeccCc
Q 026163 137 TLELPSS 143 (242)
Q Consensus 137 ~L~l~~n 143 (242)
+|++++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.57 E-value=0.012 Score=52.23 Aligned_cols=111 Identities=23% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCCCEEEecCCCccccc-CchhhhcCCCCCEEeccCc-cCCCCCC----hhccCCcCCcEEEcccCc-CCCCCCcCcC-
Q 026163 107 FPNLKSFKIHSNYLLSGS-IPSEITALSMLQTLELPSS-RLTGIIP----SEMGRLRNLVRLDLSDNY-IGGYIPPTLG- 178 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~n-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~- 178 (242)
.+.|+.+.+.++..+... +-.....+++|+.|+++++ ......+ .....+.+|+.+++++.. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666654332211 2233455677777777762 1111111 122345667777777766 4432222222
Q ss_pred CCCCCCEEEeecCC-Ccccc-ccccCCCCCCcEEEcccCCC
Q 026163 179 RLSKLKILNLSSNF-LVGNI-PLTLCHLSKLKILNLSSNSL 217 (242)
Q Consensus 179 ~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~l 217 (242)
.+++|++|.+.++. +++.. -.....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766555 44321 22234566677777776654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=0.012 Score=45.87 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCC-CCCcCcC-CCCCCCEEEeecC-CCccccccccCCCCCCcE
Q 026163 133 SMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGG-YIPPTLG-RLSKLKILNLSSN-FLVGNIPLTLCHLSKLKI 209 (242)
Q Consensus 133 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~-~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~ 209 (242)
..++.+|-++..|..+--+.+.+++.++.|.+.++.--+ .--+.++ -.++|+.|++++| +|+...-..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357788888887776555667777778887777764211 1011111 3467888888866 455544445667777777
Q ss_pred EEcccC
Q 026163 210 LNLSSN 215 (242)
Q Consensus 210 L~L~~N 215 (242)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 776543
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.38 E-value=0.04 Score=48.81 Aligned_cols=111 Identities=24% Similarity=0.170 Sum_probs=74.8
Q ss_pred hcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccC-cCCCCCC----cCcCCCCCCCEEEeecCC-Ccccccccc
Q 026163 130 TALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDN-YIGGYIP----PTLGRLSKLKILNLSSNF-LVGNIPLTL 201 (242)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~L~~N~-l~~~~p~~l 201 (242)
..++.|+.+.+.++.-... .-......++|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478899999988754323 2344567899999999873 2111111 234456899999999988 664433333
Q ss_pred C-CCCCCcEEEcccCC-CCCCCc-ccccCCcCCCEEeCcCCC
Q 026163 202 C-HLSKLKILNLSSNS-LVGNIP-PTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 202 ~-~l~~L~~L~L~~N~-l~~~~p-~~l~~l~~L~~L~ls~N~ 240 (242)
. .+++|+.|.+.++. +++..- .....++.|++|+++++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3 37899999988777 554332 334578889999998764
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.08 E-value=0.22 Score=25.08 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.1
Q ss_pred CCCEEeccCccCC
Q 026163 134 MLQTLELPSSRLT 146 (242)
Q Consensus 134 ~L~~L~l~~n~l~ 146 (242)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.08 E-value=0.22 Score=25.08 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.1
Q ss_pred CCCEEeccCccCC
Q 026163 134 MLQTLELPSSRLT 146 (242)
Q Consensus 134 ~L~~L~l~~n~l~ 146 (242)
+|++|++++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.91 E-value=0.22 Score=25.07 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=8.7
Q ss_pred CCCcEEEcccCCCC
Q 026163 205 SKLKILNLSSNSLV 218 (242)
Q Consensus 205 ~~L~~L~L~~N~l~ 218 (242)
++|++|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.91 E-value=0.22 Score=25.07 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=8.7
Q ss_pred CCCcEEEcccCCCC
Q 026163 205 SKLKILNLSSNSLV 218 (242)
Q Consensus 205 ~~L~~L~L~~N~l~ 218 (242)
++|++|++++|.++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.21 E-value=0.0049 Score=55.05 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCCCC
Q 026163 205 SKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 205 ~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l 241 (242)
++++.++++.|.|+.. +.+.+..++.++++.+++|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 4566677777766543 233444556666676666654
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.02 E-value=0.0052 Score=54.88 Aligned_cols=157 Identities=27% Similarity=0.305 Sum_probs=100.3
Q ss_pred eEEEEecccCCCCceee----eCCCCcCCCCCCCEEEecCCCcccccCc---hhhhcC-CCCCEEeccCccCCCC----C
Q 026163 82 VIRVSLLWYENDNMKGE----LGRFNFSCFPNLKSFKIHSNYLLSGSIP---SEITAL-SMLQTLELPSSRLTGI----I 149 (242)
Q Consensus 82 v~~L~l~~~~~~~~~~~----i~~~~~~~l~~L~~L~l~~~~~~~~~~p---~~~~~l-~~L~~L~l~~n~l~~~----~ 149 (242)
+..+.+.++ .+... + ...+...+.|+.|++++|++...... ..+... ..+++|++..|.+++. +
T Consensus 89 l~~L~L~~~---~l~~~~~~~l-~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANN---RLGDRGAEEL-AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhC---ccccchHHHH-HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 455666665 43321 2 34566778889999998776321111 112222 4577888888888744 3
Q ss_pred ChhccCCcCCcEEEcccCcCCC----CCCcCcC----CCCCCCEEEeecCCCccc----cccccCCCCC-CcEEEcccCC
Q 026163 150 PSEMGRLRNLVRLDLSDNYIGG----YIPPTLG----RLSKLKILNLSSNFLVGN----IPLTLCHLSK-LKILNLSSNS 216 (242)
Q Consensus 150 p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~-L~~L~L~~N~ 216 (242)
...+....+++.++++.|.+.. .++..+. ...++++|.+.+|.++.. +...+...+. +..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 3445567889999999998741 1222333 477899999999988742 1123444455 7779999999
Q ss_pred CCCC----CcccccCC-cCCCEEeCcCCCCC
Q 026163 217 LVGN----IPPTLGHL-TQLTTLAMSNKVAI 242 (242)
Q Consensus 217 l~~~----~p~~l~~l-~~L~~L~ls~N~lt 242 (242)
+.+. ..+.+..+ +.+++++++.|.|+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 8743 23344555 67899999999875
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.00 E-value=0.15 Score=44.30 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCcc-CCCCCChhc-cCCcCCcEEEcccCcCC--CCCCcCcCCCC
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSR-LTGIIPSEM-GRLRNLVRLDLSDNYIG--GYIPPTLGRLS 181 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~ 181 (242)
+..|++++.+++...+...-..+ .+..+|++|-++.++ |++.--..+ .+.++|+.+++.+.... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 34455555554433222111122 235556666666554 221110111 23455555555554332 11122223455
Q ss_pred CCCEEEeecCCCcccc-----ccccCCCCCCcEEEcccCCCCC-CCcccccCCcCCCEEeCc
Q 026163 182 KLKILNLSSNFLVGNI-----PLTLCHLSKLKILNLSSNSLVG-NIPPTLGHLTQLTTLAMS 237 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~ls 237 (242)
.|+.+.++++...... ...-..+..|+.+.+++++... ..-+.+..+++|+.+++-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 5666666554332110 1111233445555555555331 112233444455554443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.95 E-value=0.17 Score=24.97 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=5.8
Q ss_pred cCCCEEeCcCCCC
Q 026163 229 TQLTTLAMSNKVA 241 (242)
Q Consensus 229 ~~L~~L~ls~N~l 241 (242)
++|++|++++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4455555555554
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.52 E-value=0.51 Score=24.02 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=6.8
Q ss_pred CCCcEEEcccCCC
Q 026163 205 SKLKILNLSSNSL 217 (242)
Q Consensus 205 ~~L~~L~L~~N~l 217 (242)
.+|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=0.088 Score=41.25 Aligned_cols=33 Identities=33% Similarity=0.248 Sum_probs=13.9
Q ss_pred cCCcEEEcccC-cCCCCCCcCcCCCCCCCEEEee
Q 026163 157 RNLVRLDLSDN-YIGGYIPPTLGRLSKLKILNLS 189 (242)
Q Consensus 157 ~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~ 189 (242)
++|+.|++++| +|+..--..+.++++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34555555544 2332222234444455544443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.12 E-value=0.74 Score=23.71 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=6.8
Q ss_pred CCCEEeCcCCCC
Q 026163 230 QLTTLAMSNKVA 241 (242)
Q Consensus 230 ~L~~L~ls~N~l 241 (242)
+|++|||++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455566665554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.62 E-value=0.38 Score=43.19 Aligned_cols=63 Identities=27% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCcCCcEEEcccCcCCCC--CCcCcCCCCCCCEEEeecC--CCccccccccC--CCCCCcEEEcccCCCCC
Q 026163 155 RLRNLVRLDLSDNYIGGY--IPPTLGRLSKLKILNLSSN--FLVGNIPLTLC--HLSKLKILNLSSNSLVG 219 (242)
Q Consensus 155 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~l~--~l~~L~~L~L~~N~l~~ 219 (242)
+.+.+..+++++|++... +...-...|+|..|+|++| .+... .++. +...|++|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 344555556666655311 1111223455666666666 22211 1111 12345566666666543
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.53 E-value=0.55 Score=40.89 Aligned_cols=112 Identities=18% Similarity=0.104 Sum_probs=65.5
Q ss_pred CCCCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCC-----CcC
Q 026163 105 SCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYI-----PPT 176 (242)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~ 176 (242)
.+.++|+.+.++++..++..--..+ .+.+.|+.+++..+..... +...-.+++.|+.+.++++...... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 3557788888887766543211122 3567788888887765421 1122245677888888877543111 122
Q ss_pred cCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCC
Q 026163 177 LGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNS 216 (242)
Q Consensus 177 ~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~ 216 (242)
-..+..|+.+.|+++.... ..-+.+..+++|+.+++-+++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2345667777787776542 223345666777777776665
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.83 E-value=0.87 Score=23.16 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=6.8
Q ss_pred CCcEEEcccCcCC
Q 026163 158 NLVRLDLSDNYIG 170 (242)
Q Consensus 158 ~L~~L~Ls~N~l~ 170 (242)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.43 E-value=2.5 Score=38.15 Aligned_cols=62 Identities=26% Similarity=0.255 Sum_probs=41.8
Q ss_pred CCCCCCEEEeecCCCccc--cccccCCCCCCcEEEcccC--CCCCCCcccccCC--cCCCEEeCcCCCCC
Q 026163 179 RLSKLKILNLSSNFLVGN--IPLTLCHLSKLKILNLSSN--SLVGNIPPTLGHL--TQLTTLAMSNKVAI 242 (242)
Q Consensus 179 ~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~~l--~~L~~L~ls~N~lt 242 (242)
+.+.+..++|++|++... +-..-...|+|..|+|++| .+. ...++.++ ..|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 567788999999998632 1111234589999999999 443 22333333 35899999999874
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.64 E-value=15 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=6.2
Q ss_pred CCCCEEeccCc
Q 026163 133 SMLQTLELPSS 143 (242)
Q Consensus 133 ~~L~~L~l~~n 143 (242)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.45 E-value=17 Score=39.42 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=25.9
Q ss_pred eccCccCCCCCChhccCCcCCcEEEcccCcCC
Q 026163 139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG 170 (242)
Q Consensus 139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 170 (242)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666667788888999999988775
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.19 E-value=18 Score=39.23 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=22.6
Q ss_pred EecCCCcccccCc-hhhhcCCCCCEEeccCccCC
Q 026163 114 KIHSNYLLSGSIP-SEITALSMLQTLELPSSRLT 146 (242)
Q Consensus 114 ~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~ 146 (242)
||++|++ + .+| ..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~L-s-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKI-S-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcC-C-ccChHHhccCCCceEEEeeCCccc
Confidence 4665555 3 444 45788999999999999776
No 93
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.14 E-value=27 Score=23.91 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=5.5
Q ss_pred CcchhhHHHHHHH
Q 026163 1 MASASSVSRLVVI 13 (242)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (242)
|| .+.+.+|.++
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 66 4444333333
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.57 E-value=33 Score=30.85 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=10.2
Q ss_pred CCCCEEeccCccCCCCCC
Q 026163 133 SMLQTLELPSSRLTGIIP 150 (242)
Q Consensus 133 ~~L~~L~l~~n~l~~~~p 150 (242)
+.+++++++.|.+....|
T Consensus 165 pr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVP 182 (553)
T ss_pred chhhhhccCCCcccccCC
Confidence 446666666666554433
Done!