Query 026163
Match_columns 242
No_of_seqs 474 out of 2788
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-32 2.3E-36 226.4 14.3 190 39-241 2-209 (313)
2 4eco_A Uncharacterized protein 100.0 3.1E-28 1.1E-32 222.1 14.3 192 41-242 28-343 (636)
3 3rgz_A Protein brassinosteroid 99.9 1.6E-27 5.6E-32 221.6 13.9 199 37-241 6-259 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.4E-27 4.8E-32 223.4 13.3 202 36-242 262-586 (876)
5 4fcg_A Uncharacterized protein 99.9 6.6E-27 2.3E-31 197.3 10.8 193 38-240 22-240 (328)
6 3m19_A Variable lymphocyte rec 99.9 3.4E-24 1.2E-28 173.8 17.0 158 80-242 35-192 (251)
7 2o6q_A Variable lymphocyte rec 99.9 9E-24 3.1E-28 173.2 16.7 155 81-241 38-193 (270)
8 3e6j_A Variable lymphocyte rec 99.9 8.6E-23 3E-27 163.6 16.2 158 65-242 15-172 (229)
9 3rgz_A Protein brassinosteroid 99.9 2.4E-23 8.2E-28 193.6 12.3 157 80-241 490-716 (768)
10 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-22 1.2E-26 164.7 17.2 157 81-241 57-213 (285)
11 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-23 6.6E-28 174.9 9.3 157 79-241 75-233 (313)
12 1ozn_A Reticulon 4 receptor; N 99.9 7.8E-22 2.7E-26 162.6 16.8 159 79-242 31-190 (285)
13 3rfs_A Internalin B, repeat mo 99.9 1E-21 3.5E-26 161.1 16.9 157 79-242 62-218 (272)
14 4fcg_A Uncharacterized protein 99.9 3.8E-22 1.3E-26 168.1 14.1 154 80-241 104-289 (328)
15 2v9t_B SLIT homolog 2 protein 99.9 7.5E-22 2.6E-26 157.2 14.2 133 108-241 32-164 (220)
16 2v70_A SLIT-2, SLIT homolog 2 99.9 9.2E-22 3.1E-26 156.7 13.8 133 108-241 32-165 (220)
17 2z80_A TOLL-like receptor 2, v 99.9 6.4E-22 2.2E-26 168.0 13.5 171 66-242 27-211 (353)
18 2z66_A Variable lymphocyte rec 99.9 4E-22 1.4E-26 165.9 11.8 171 68-242 6-212 (306)
19 2o6q_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 157.4 17.4 159 79-242 60-218 (270)
20 3v47_A TOLL-like receptor 5B a 99.9 5.2E-22 1.8E-26 173.6 12.8 159 66-228 5-177 (455)
21 1p9a_G Platelet glycoprotein I 99.9 2.4E-21 8.3E-26 160.5 16.1 133 106-241 75-207 (290)
22 2o6s_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 151.4 16.2 146 68-218 6-161 (208)
23 3rfs_A Internalin B, repeat mo 99.9 5.1E-21 1.7E-25 157.0 16.8 155 79-242 40-194 (272)
24 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-21 5.8E-26 174.2 13.4 156 80-240 26-183 (549)
25 2z62_A TOLL-like receptor 4, v 99.9 5.7E-21 1.9E-25 156.8 14.8 157 80-241 28-189 (276)
26 3zyi_A Leucine-rich repeat-con 99.9 9.3E-21 3.2E-25 166.0 16.4 87 80-171 75-161 (452)
27 2z66_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 160.5 12.8 158 80-241 101-260 (306)
28 2id5_A Lingo-1, leucine rich r 99.9 1E-20 3.6E-25 166.5 16.7 158 80-242 32-189 (477)
29 3m19_A Variable lymphocyte rec 99.9 1.7E-20 5.9E-25 152.0 16.3 166 67-242 3-168 (251)
30 1p9a_G Platelet glycoprotein I 99.9 2.1E-20 7.3E-25 154.8 17.0 156 79-242 30-185 (290)
31 3zyj_A Leucine-rich repeat-con 99.9 2.4E-20 8.2E-25 162.9 17.3 155 80-241 64-243 (440)
32 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-20 4.2E-25 170.6 14.1 159 79-242 31-194 (606)
33 4ezg_A Putative uncharacterize 99.8 8.2E-21 2.8E-25 148.5 11.3 151 79-242 43-194 (197)
34 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-20 5.1E-25 176.5 14.7 170 67-241 12-186 (844)
35 2xwt_C Thyrotropin receptor; s 99.8 3.1E-20 1.1E-24 149.3 14.6 153 80-239 31-189 (239)
36 2xot_A Amphoterin-induced prot 99.8 1E-20 3.5E-25 161.3 11.8 168 69-241 18-201 (361)
37 3zyj_A Leucine-rich repeat-con 99.8 4.2E-20 1.4E-24 161.4 15.2 137 103-241 155-291 (440)
38 1wwl_A Monocyte differentiatio 99.8 9E-21 3.1E-25 158.5 10.4 158 79-242 94-266 (312)
39 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-20 1.1E-24 167.8 14.8 158 80-242 52-214 (635)
40 3v47_A TOLL-like receptor 5B a 99.8 8.6E-21 3E-25 165.9 10.1 134 108-242 275-408 (455)
41 1w8a_A SLIT protein; signaling 99.8 5E-20 1.7E-24 143.5 12.3 113 109-222 30-143 (192)
42 2o6s_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 145.4 11.9 135 107-242 27-161 (208)
43 3vq2_A TLR4, TOLL-like recepto 99.8 4.4E-20 1.5E-24 166.9 13.7 156 80-241 376-533 (606)
44 3t6q_A CD180 antigen; protein- 99.8 6.8E-20 2.3E-24 165.7 14.9 158 80-242 33-192 (606)
45 3zyi_A Leucine-rich repeat-con 99.8 8E-20 2.7E-24 160.1 14.7 157 79-241 122-302 (452)
46 2z62_A TOLL-like receptor 4, v 99.8 6.1E-20 2.1E-24 150.6 13.0 159 79-242 51-237 (276)
47 3o6n_A APL1; leucine-rich repe 99.8 6.5E-20 2.2E-24 157.6 13.5 154 80-241 45-198 (390)
48 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-19 3.7E-24 166.6 15.5 159 79-242 24-184 (680)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.8E-19 6.3E-24 151.6 15.1 165 69-241 33-253 (332)
50 3oja_B Anopheles plasmodium-re 99.8 9.5E-20 3.3E-24 165.0 14.1 153 81-241 52-204 (597)
51 4eco_A Uncharacterized protein 99.8 6.5E-21 2.2E-25 173.9 6.1 165 70-242 194-390 (636)
52 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-19 7.6E-24 142.8 14.2 148 69-220 11-168 (220)
53 2ell_A Acidic leucine-rich nuc 99.8 5.2E-20 1.8E-24 140.1 10.1 133 107-241 23-159 (168)
54 2xwt_C Thyrotropin receptor; s 99.8 8.5E-20 2.9E-24 146.7 11.7 159 78-242 53-218 (239)
55 1xku_A Decorin; proteoglycan, 99.8 2E-19 6.7E-24 151.2 14.1 136 103-242 140-276 (330)
56 3o6n_A APL1; leucine-rich repe 99.8 5.1E-19 1.7E-23 152.0 16.7 110 80-194 69-178 (390)
57 3t6q_A CD180 antigen; protein- 99.8 2.5E-19 8.6E-24 162.0 15.4 156 80-241 376-535 (606)
58 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-19 7.2E-24 159.8 14.4 157 77-242 321-481 (520)
59 2z63_A TOLL-like receptor 4, v 99.8 1.1E-19 3.8E-24 163.0 12.5 158 79-242 372-531 (570)
60 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.6E-24 161.4 14.0 159 79-242 27-190 (570)
61 2z80_A TOLL-like receptor 2, v 99.8 9E-20 3.1E-24 154.7 10.9 159 78-242 74-235 (353)
62 1wwl_A Monocyte differentiatio 99.8 9.3E-20 3.2E-24 152.3 10.5 153 80-242 149-309 (312)
63 3oja_B Anopheles plasmodium-re 99.8 6E-19 2.1E-23 159.7 16.6 158 80-242 75-291 (597)
64 2id5_A Lingo-1, leucine rich r 99.8 3E-19 1E-23 157.2 14.2 157 78-240 54-211 (477)
65 2v9t_B SLIT homolog 2 protein 99.8 6.9E-19 2.4E-23 140.0 13.9 146 69-219 11-166 (220)
66 1xku_A Decorin; proteoglycan, 99.8 6.5E-19 2.2E-23 148.0 14.4 164 68-242 30-229 (330)
67 4ecn_A Leucine-rich repeat pro 99.8 7.5E-20 2.6E-24 171.3 9.4 156 78-242 446-632 (876)
68 1ziw_A TOLL-like receptor 3; i 99.8 9.7E-19 3.3E-23 160.2 16.2 160 80-242 405-597 (680)
69 2wfh_A SLIT homolog 2 protein 99.8 7.1E-19 2.4E-23 137.1 12.7 110 108-219 31-140 (193)
70 2je0_A Acidic leucine-rich nuc 99.8 7E-20 2.4E-24 136.7 6.6 131 106-238 15-149 (149)
71 4g8a_A TOLL-like receptor 4; l 99.8 5.3E-19 1.8E-23 159.9 13.6 158 81-242 421-580 (635)
72 4glp_A Monocyte differentiatio 99.8 2E-19 6.7E-24 150.1 10.0 154 79-242 144-307 (310)
73 2ft3_A Biglycan; proteoglycan, 99.8 6.4E-19 2.2E-23 148.3 13.1 157 79-242 77-277 (332)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.8E-19 2.7E-23 157.7 14.3 157 77-242 350-510 (562)
75 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.3E-23 147.8 14.9 163 67-242 10-176 (361)
76 4glp_A Monocyte differentiatio 99.8 2.5E-19 8.7E-24 149.5 9.7 156 81-242 92-264 (310)
77 4ezg_A Putative uncharacterize 99.8 8.6E-19 2.9E-23 136.9 11.4 132 104-242 40-172 (197)
78 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 7.9E-23 142.6 14.6 146 79-241 67-212 (291)
79 2o6r_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 131.3 14.1 115 107-222 27-141 (177)
80 1h6u_A Internalin H; cell adhe 99.8 2.5E-18 8.4E-23 143.5 14.5 146 79-241 62-207 (308)
81 3e6j_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 137.0 14.3 143 72-221 32-175 (229)
82 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-18 4E-23 155.0 12.9 134 105-242 321-457 (520)
83 1h6u_A Internalin H; cell adhe 99.8 4.5E-18 1.5E-22 141.9 15.2 147 79-242 40-186 (308)
84 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.1E-23 143.2 12.6 147 79-242 45-191 (291)
85 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-18 5.3E-23 162.8 13.6 160 78-241 46-216 (844)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.5E-18 8.4E-23 154.5 14.1 134 105-242 350-486 (562)
87 1w8a_A SLIT protein; signaling 99.8 2.8E-18 9.4E-23 133.6 12.6 108 134-241 30-138 (192)
88 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-18 4.5E-23 155.4 12.0 159 78-242 48-209 (549)
89 4fmz_A Internalin; leucine ric 99.8 3.9E-18 1.3E-22 144.0 12.9 130 104-242 217-346 (347)
90 1xeu_A Internalin C; cellular 99.8 4.4E-18 1.5E-22 138.9 12.4 145 79-241 40-184 (263)
91 4b8c_D Glucose-repressible alc 99.7 1.2E-18 4.1E-23 161.0 8.0 110 128-241 219-328 (727)
92 3cvr_A Invasion plasmid antige 99.7 5.8E-18 2E-22 152.0 12.2 149 65-242 39-193 (571)
93 2ell_A Acidic leucine-rich nuc 99.7 3.8E-18 1.3E-22 129.8 9.3 137 79-223 23-164 (168)
94 3o53_A Protein LRIM1, AGAP0063 99.7 3.8E-18 1.3E-22 142.8 10.1 132 106-242 118-250 (317)
95 3oja_A Leucine-rich immune mol 99.7 1.5E-18 5E-23 153.6 7.8 146 80-242 58-204 (487)
96 3oja_A Leucine-rich immune mol 99.7 6.2E-18 2.1E-22 149.6 11.3 132 106-242 118-250 (487)
97 2o6r_A Variable lymphocyte rec 99.7 2.5E-17 8.4E-22 126.3 12.9 109 133-241 28-136 (177)
98 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.5E-22 150.3 13.4 146 79-241 64-209 (605)
99 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.1E-22 149.7 13.8 147 79-242 42-188 (605)
100 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 127.3 13.1 125 112-241 14-138 (193)
101 1a9n_A U2A', U2A'; complex (nu 99.7 3.4E-18 1.2E-22 131.1 6.8 134 102-241 13-152 (176)
102 4fmz_A Internalin; leucine ric 99.7 4E-17 1.4E-21 137.8 13.8 130 104-242 195-324 (347)
103 3o53_A Protein LRIM1, AGAP0063 99.7 2E-18 6.9E-23 144.4 4.4 161 69-238 109-271 (317)
104 1o6v_A Internalin A; bacterial 99.7 4E-17 1.4E-21 143.4 12.7 127 104-241 261-387 (466)
105 4b8c_D Glucose-repressible alc 99.7 2E-18 6.8E-23 159.5 4.4 121 101-226 217-337 (727)
106 4ay9_X Follicle-stimulating ho 99.7 6.7E-17 2.3E-21 137.1 12.8 167 69-242 9-215 (350)
107 1xeu_A Internalin C; cellular 99.7 7.2E-17 2.5E-21 131.7 12.4 128 103-242 36-163 (263)
108 1o6v_A Internalin A; bacterial 99.7 1.5E-16 5.1E-21 139.8 14.2 128 104-242 239-366 (466)
109 3cvr_A Invasion plasmid antige 99.7 2E-16 6.7E-21 142.1 15.1 116 109-242 121-243 (571)
110 3g39_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 121.4 12.0 107 110-220 11-117 (170)
111 2ast_B S-phase kinase-associat 99.7 2.2E-18 7.6E-23 144.8 1.5 135 104-239 114-257 (336)
112 2je0_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 121.9 7.8 109 132-242 16-126 (149)
113 3bz5_A Internalin-J, INLJ; leu 99.7 6.2E-16 2.1E-20 135.7 16.6 143 78-241 83-245 (457)
114 2ast_B S-phase kinase-associat 99.7 4.3E-18 1.5E-22 143.0 2.6 158 78-239 116-282 (336)
115 3bz5_A Internalin-J, INLJ; leu 99.7 4.5E-16 1.5E-20 136.6 15.5 141 80-242 64-204 (457)
116 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 146.5 1.6 158 80-242 94-287 (386)
117 2r9u_A Variable lymphocyte rec 99.7 3.4E-16 1.2E-20 119.9 12.0 105 111-219 15-119 (174)
118 1ds9_A Outer arm dynein; leuci 99.7 1.2E-19 4E-24 142.0 -8.2 131 103-241 43-184 (198)
119 2ca6_A RAN GTPase-activating p 99.7 3.2E-18 1.1E-22 146.9 -1.3 161 79-242 121-316 (386)
120 1dce_A Protein (RAB geranylger 99.7 3.4E-16 1.2E-20 140.8 11.2 103 134-241 442-545 (567)
121 3g39_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 116.3 11.3 105 84-196 13-117 (170)
122 3goz_A Leucine-rich repeat-con 99.6 2.3E-17 8E-22 140.4 0.9 157 81-242 52-238 (362)
123 2r9u_A Variable lymphocyte rec 99.6 2.1E-15 7E-20 115.5 11.0 106 83-196 15-120 (174)
124 3g06_A SSPH2 (leucine-rich rep 99.6 9E-16 3.1E-20 139.2 9.8 90 65-170 18-114 (622)
125 1jl5_A Outer protein YOPM; leu 99.6 1.4E-14 4.7E-19 127.1 14.8 102 104-218 149-250 (454)
126 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.6E-20 116.1 7.8 110 129-242 15-126 (176)
127 3goz_A Leucine-rich repeat-con 99.6 1.5E-16 5.1E-21 135.5 1.5 159 79-242 21-209 (362)
128 3g06_A SSPH2 (leucine-rich rep 99.6 2.2E-14 7.7E-19 130.1 15.8 77 157-242 221-297 (622)
129 1dce_A Protein (RAB geranylger 99.6 3.3E-15 1.1E-19 134.4 10.2 122 109-236 442-567 (567)
130 1ds9_A Outer arm dynein; leuci 99.6 5.3E-18 1.8E-22 132.5 -7.1 113 124-241 39-152 (198)
131 1jl5_A Outer protein YOPM; leu 99.6 2.5E-14 8.5E-19 125.4 14.9 120 108-242 131-250 (454)
132 1z7x_W Ribonuclease inhibitor; 99.6 7.1E-17 2.4E-21 141.1 -2.7 137 106-242 254-411 (461)
133 2ifg_A High affinity nerve gro 99.5 2.4E-14 8.2E-19 120.9 10.3 106 111-219 11-117 (347)
134 1z7x_W Ribonuclease inhibitor; 99.5 1.4E-16 4.8E-21 139.2 -3.8 108 134-241 86-211 (461)
135 4ay9_X Follicle-stimulating ho 99.5 3.4E-14 1.2E-18 120.3 9.4 150 79-232 53-229 (350)
136 2ifg_A High affinity nerve gro 99.5 1.3E-13 4.6E-18 116.3 9.3 111 68-195 7-117 (347)
137 3un9_A NLR family member X1; l 99.5 8E-16 2.7E-20 131.6 -5.2 160 80-242 72-252 (372)
138 3sb4_A Hypothetical leucine ri 99.4 2.9E-12 1E-16 107.4 11.0 84 156-241 225-309 (329)
139 3ogk_B Coronatine-insensitive 99.3 8.6E-14 2.9E-18 125.2 -1.8 135 107-242 377-526 (592)
140 3sb4_A Hypothetical leucine ri 99.3 3.7E-11 1.3E-15 100.7 11.6 103 132-236 225-328 (329)
141 3un9_A NLR family member X1; l 99.2 5.9E-13 2E-17 113.8 -1.7 135 107-242 71-224 (372)
142 3ogk_B Coronatine-insensitive 99.2 7.6E-12 2.6E-16 112.5 3.3 63 106-169 162-232 (592)
143 2p1m_B Transport inhibitor res 99.1 1.3E-11 4.5E-16 110.9 1.6 109 79-191 104-221 (594)
144 3rw6_A Nuclear RNA export fact 99.1 1.6E-13 5.5E-18 111.6 -10.5 80 154-235 167-257 (267)
145 2p1m_B Transport inhibitor res 99.1 3.2E-12 1.1E-16 114.9 -3.7 134 107-242 371-519 (594)
146 2ra8_A Uncharacterized protein 99.1 5E-11 1.7E-15 101.3 3.4 158 80-242 139-320 (362)
147 1io0_A Tropomodulin; LRR prote 98.9 1.1E-10 3.6E-15 90.1 0.5 112 130-241 33-163 (185)
148 4fdw_A Leucine rich hypothetic 98.8 2.7E-08 9.2E-13 85.7 12.2 134 99-240 217-356 (401)
149 4fdw_A Leucine rich hypothetic 98.8 4.7E-08 1.6E-12 84.1 13.2 138 98-239 170-333 (401)
150 2ra8_A Uncharacterized protein 98.8 3E-09 1E-13 90.3 4.8 158 78-242 105-292 (362)
151 1io0_A Tropomodulin; LRR prote 98.8 1.1E-09 3.8E-14 84.3 0.5 118 101-218 29-164 (185)
152 3rw6_A Nuclear RNA export fact 98.8 8.1E-10 2.8E-14 89.8 -0.3 80 130-211 167-257 (267)
153 3e4g_A ATP synthase subunit S, 98.5 5.1E-08 1.8E-12 74.0 2.4 87 132-218 60-153 (176)
154 3e4g_A ATP synthase subunit S, 98.4 4.6E-08 1.6E-12 74.3 0.8 86 108-194 61-153 (176)
155 4gt6_A Cell surface protein; l 98.1 1.3E-05 4.3E-10 68.5 10.4 136 98-241 255-390 (394)
156 4h09_A Hypothetical leucine ri 98.0 6.3E-05 2.2E-09 63.6 12.2 132 102-238 211-342 (379)
157 4fs7_A Uncharacterized protein 98.0 8E-05 2.7E-09 63.5 12.6 130 101-238 246-375 (394)
158 1pgv_A TMD-1, tropomodulin TMD 97.9 2.9E-06 9.8E-11 65.5 0.8 110 131-240 39-168 (197)
159 4gt6_A Cell surface protein; l 97.8 0.00015 5.1E-09 61.8 10.5 109 128-240 260-368 (394)
160 4fs7_A Uncharacterized protein 97.8 0.00021 7.1E-09 60.9 11.3 127 99-234 267-393 (394)
161 4h09_A Hypothetical leucine ri 97.7 0.00022 7.5E-09 60.3 10.6 127 98-229 230-356 (379)
162 3rfe_A Platelet glycoprotein I 97.4 0.00031 1.1E-08 50.4 6.0 57 160-218 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 5.1E-05 1.8E-09 58.5 1.0 87 153-239 37-136 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00065 2.2E-08 48.7 6.0 57 136-194 11-68 (130)
165 2lz0_A Uncharacterized protein 54.9 19 0.00066 23.7 4.5 48 167-215 6-53 (100)
166 2lz0_A Uncharacterized protein 47.8 38 0.0013 22.2 5.0 36 129-165 16-51 (100)
167 3ox7_P MH027; urokinase-type p 25.1 17 0.00057 16.5 0.1 10 67-76 6-15 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.6e-32 Score=226.39 Aligned_cols=190 Identities=28% Similarity=0.504 Sum_probs=159.0
Q ss_pred CCcHHHHHHHHh----------cCCCCCCCCCCCCCCCCCCc--ccceEeCCC---CCeEEEEecccCCCCcee--eeCC
Q 026163 39 SPVQLEREALLI----------TGWWYDNWATSGNYTSDHCK--WTGIRCNSA---GSVIRVSLLWYENDNMKG--ELGR 101 (242)
Q Consensus 39 ~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~C~--w~gv~c~~~---~~v~~L~l~~~~~~~~~~--~i~~ 101 (242)
.|.++|++||++ +++|.. +.++|. |.||+|+.. ++|+.|+++++ ++.+ .+ +
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~--------~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~---~l~~~~~~-~ 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP--------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---NLPKPYPI-P 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT--------TSCTTTTCSTTEEECCSSSCCCEEEEEEECC---CCSSCEEC-C
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC--------CCCCCcCCCcceEeCCCCCCceEEEEECCCC---CccCCccc-C
Confidence 588999999987 223422 467898 999999754 79999999998 8888 77 7
Q ss_pred CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
..+..+++|++|++++++.+.+.+|..+.++++|++|++++|++++.+|..+.++++|++|++++|++++.+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 88999999999999953445678898999999999999999999988999999999999999999999988999999999
Q ss_pred CCCEEEeecCCCccccccccCCCC-CCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLS-KLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 999999999999988888888887 888888888888776666666655 66666666654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.1e-28 Score=222.12 Aligned_cols=192 Identities=19% Similarity=0.301 Sum_probs=168.1
Q ss_pred cHHHHHHHHh------cCCCCC---------CCCCCCCCCCCCCcc---cceEeCCCCCeEEEEecccCCCCceeeeCCC
Q 026163 41 VQLEREALLI------TGWWYD---------NWATSGNYTSDHCKW---TGIRCNSAGSVIRVSLLWYENDNMKGELGRF 102 (242)
Q Consensus 41 ~~~~~~~l~~------~~~w~~---------~~~~~~~~~~~~C~w---~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~ 102 (242)
...|+.||.+ ...|.. .|. .+.++|.| .||+|+..++|+.|+++++ ++.|.+ ++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~---~l~g~l-p~ 99 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGF---GASGRV-PD 99 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTS---CCEEEE-CG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCc---ccCCcC-Ch
Confidence 4568888887 234541 232 25689999 9999987899999999999 999999 78
Q ss_pred CcCCCCCCCEEEecCCCc--------------------------------------------------------------
Q 026163 103 NFSCFPNLKSFKIHSNYL-------------------------------------------------------------- 120 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~-------------------------------------------------------------- 120 (242)
.++.+++|++|++++|+.
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999987632
Q ss_pred ---------------ccccCchhhhcCCCCCEEeccCccCCCC-----------------CChhcc--CCcCCcEEEccc
Q 026163 121 ---------------LSGSIPSEITALSMLQTLELPSSRLTGI-----------------IPSEMG--RLRNLVRLDLSD 166 (242)
Q Consensus 121 ---------------~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~ 166 (242)
+++ +|..+.++++|++|++++|++++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 334 788899999999999999999985 899998 999999999999
Q ss_pred CcCCCCCCcCcCCCCCCCEEEeecCC-Ccc-ccccccCCC------CCCcEEEcccCCCCCCCcc--cccCCcCCCEEeC
Q 026163 167 NYIGGYIPPTLGRLSKLKILNLSSNF-LVG-NIPLTLCHL------SKLKILNLSSNSLVGNIPP--TLGHLTQLTTLAM 236 (242)
Q Consensus 167 N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~l 236 (242)
|++.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 99999999999999999999999998 998 889888776 89999999999999 7888 8999999999999
Q ss_pred cCCCCC
Q 026163 237 SNKVAI 242 (242)
Q Consensus 237 s~N~lt 242 (242)
++|+++
T Consensus 338 ~~N~l~ 343 (636)
T 4eco_A 338 LYNQLE 343 (636)
T ss_dssp CSCCCE
T ss_pred cCCcCc
Confidence 999874
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.6e-27 Score=221.62 Aligned_cols=199 Identities=26% Similarity=0.309 Sum_probs=139.7
Q ss_pred CCCCcHHHHHHHHh-cCCCCCCCCCCCC-CCCCCCcccceEeCCCCCeEEEEecccCCCCceee---eC-----------
Q 026163 37 LSSPVQLEREALLI-TGWWYDNWATSGN-YTSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGE---LG----------- 100 (242)
Q Consensus 37 ~~~~~~~~~~~l~~-~~~w~~~~~~~~~-~~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~---i~----------- 100 (242)
+..+.+.|++||++ .+++.+.....+| .+.+||.|.||+|+ .++|+.|++++. ++.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~---~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSK---PLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTS---CCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCC---CcCCccCccChhHhccCcccc
Confidence 33446789999987 1222110011112 25689999999998 789999999988 66665 32
Q ss_pred -----------CCCcCCCCCCCEEEecCCCcccccCch--hhhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEccc
Q 026163 101 -----------RFNFSCFPNLKSFKIHSNYLLSGSIPS--EITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSD 166 (242)
Q Consensus 101 -----------~~~~~~l~~L~~L~l~~~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~ 166 (242)
+..+..+++|++|++++|. +.+.+|. .+.++++|++|++++|.+++..|..+ .++++|++|++++
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 2578888999999999554 5567777 78889999999999998887777655 6677777777777
Q ss_pred CcCCCCCCcC---c----------------------CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC
Q 026163 167 NYIGGYIPPT---L----------------------GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221 (242)
Q Consensus 167 N~l~~~~p~~---~----------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 221 (242)
|++++..|.. + ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 7766544433 2 4556666666666666665554 777777777777777777777
Q ss_pred cccccCCcCCCEEeCcCCCC
Q 026163 222 PPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 222 p~~l~~l~~L~~L~ls~N~l 241 (242)
|..++.+++|++|++++|++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCC
T ss_pred cHHHhcCCCCCEEECCCCcc
Confidence 77777777777777777765
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.4e-27 Score=223.42 Aligned_cols=202 Identities=20% Similarity=0.275 Sum_probs=164.4
Q ss_pred cCCCCcHHHHHHHHhc-CCC-CCCCCCCC-CCCCCC--Ccc------------cceEeCCCCCeEEEEecccCCCCceee
Q 026163 36 LLSSPVQLEREALLIT-GWW-YDNWATSG-NYTSDH--CKW------------TGIRCNSAGSVIRVSLLWYENDNMKGE 98 (242)
Q Consensus 36 ~~~~~~~~~~~~l~~~-~~w-~~~~~~~~-~~~~~~--C~w------------~gv~c~~~~~v~~L~l~~~~~~~~~~~ 98 (242)
....+...|+.||++. ..| .+.|.... +...++ |.| .||+|+..++|+.|+|+++ ++.|.
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~---~L~G~ 338 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF---GAKGR 338 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT---CCEEE
T ss_pred cccccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC---CCCCc
Confidence 3344567899999871 111 11233332 112344 999 9999988899999999999 99999
Q ss_pred eCCCCcCCCCCCCEEEecCCCccccc------------------------------------------------------
Q 026163 99 LGRFNFSCFPNLKSFKIHSNYLLSGS------------------------------------------------------ 124 (242)
Q Consensus 99 i~~~~~~~l~~L~~L~l~~~~~~~~~------------------------------------------------------ 124 (242)
+ ++.++.+++|++|+++.+|.+.|.
T Consensus 339 i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 339 V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 9 789999999999999323322222
Q ss_pred ----------------------CchhhhcCCCCCEEeccCccCCC-----------------CCChhcc--CCcCCcEEE
Q 026163 125 ----------------------IPSEITALSMLQTLELPSSRLTG-----------------IIPSEMG--RLRNLVRLD 163 (242)
Q Consensus 125 ----------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~ 163 (242)
+|..+.++++|++|++++|++++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 78889999999999999999998 3888887 999999999
Q ss_pred cccCcCCCCCCcCcCCCCCCCEEEeecCC-Ccc-ccccccCCC-------CCCcEEEcccCCCCCCCcc--cccCCcCCC
Q 026163 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNF-LVG-NIPLTLCHL-------SKLKILNLSSNSLVGNIPP--TLGHLTQLT 232 (242)
Q Consensus 164 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l-------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~ 232 (242)
+++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 99999999999999999999999999998 988 788765544 49999999999998 7887 889999999
Q ss_pred EEeCcCCCCC
Q 026163 233 TLAMSNKVAI 242 (242)
Q Consensus 233 ~L~ls~N~lt 242 (242)
+|++++|+++
T Consensus 577 ~L~Ls~N~l~ 586 (876)
T 4ecn_A 577 LLDCVHNKVR 586 (876)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCCcc
Confidence 9999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.6e-27 Score=197.25 Aligned_cols=193 Identities=19% Similarity=0.306 Sum_probs=113.4
Q ss_pred CCCcHHHHHHHHh--------cCCCCCCCCCCCCCCCCCCcccceEeC---------CCCCeEEEEecccCCCCceeeeC
Q 026163 38 SSPVQLEREALLI--------TGWWYDNWATSGNYTSDHCKWTGIRCN---------SAGSVIRVSLLWYENDNMKGELG 100 (242)
Q Consensus 38 ~~~~~~~~~~l~~--------~~~w~~~~~~~~~~~~~~C~w~gv~c~---------~~~~v~~L~l~~~~~~~~~~~i~ 100 (242)
..+..+|+.||+. ...|...|........++|.|.|+.|+ ...+++.|+++++ ++. .+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---~l~-~l- 96 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---PLP-QF- 96 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---CCS-SC-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC---Cch-hc-
Confidence 4455678888876 223544453222346788999999994 3478888998887 554 45
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCC-
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGR- 179 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 179 (242)
+..+..+++|++|++++|.+ . .+|..+..+++|++|++++|+++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l-~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGL-M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCC-C-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred ChhhhhCCCCCEEECCCCCc-c-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 45566677777777775544 2 56666666666777777766666 55666666666666666666555555554432
Q ss_pred --------CCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 180 --------LSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 180 --------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|+
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence 555555555555555 444444444555555555554442 33334444444444444443
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.4e-24 Score=173.85 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=139.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+.+.. +..+..+++|++|++++|. +++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 35 ~~l~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQST---GLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTS---CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCC---CcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 46889999888 777655 6789999999999999665 455556668999999999999999997777888999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99999999999777777899999999999999999776768999999999999999999877778999999999999999
Q ss_pred CCC
Q 026163 240 VAI 242 (242)
Q Consensus 240 ~lt 242 (242)
+++
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 874
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=9e-24 Score=173.18 Aligned_cols=155 Identities=25% Similarity=0.301 Sum_probs=98.3
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.++.|+++++ .+.+ +++..|..+++|++|++++|.+ + .+|. .|..+++|++|++++|++++..+..+..+++|
T Consensus 38 ~l~~L~l~~n---~l~~-~~~~~~~~l~~L~~L~l~~n~l-~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 38 DTKKLDLQSN---KLSS-LPSKAFHRLTKLRLLYLNDNKL-Q-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp TCSEEECCSS---CCSC-CCTTSSSSCTTCCEEECCSSCC-S-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCEEECcCC---CCCe-eCHHHhcCCCCCCEEECCCCcc-C-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 4566666665 4443 3255677788888888876554 2 3443 35667777777777777775555556667777
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 77777777776555555666666666666666666544444566666666666666666544445556666666666666
Q ss_pred CC
Q 026163 240 VA 241 (242)
Q Consensus 240 ~l 241 (242)
++
T Consensus 192 ~l 193 (270)
T 2o6q_A 192 QL 193 (270)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.90 E-value=8.6e-23 Score=163.56 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=121.2
Q ss_pred CCCCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc
Q 026163 65 TSDHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR 144 (242)
Q Consensus 65 ~~~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 144 (242)
+...|+|.+|.|+..+ .+.+ +..+ .++|++|++++|+ +++..|..+..+++|++|++++|+
T Consensus 15 ~~~~Cs~~~v~c~~~~---------------l~~i-p~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR---------------HASV-PAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp TTCEEETTEEECTTSC---------------CSSC-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCEeEccCCC---------------cCcc-CCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC
Confidence 5678999999996321 1222 2222 2778888888555 445556778888888888888888
Q ss_pred CCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc
Q 026163 145 LTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT 224 (242)
Q Consensus 145 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 224 (242)
++...+..|..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 87655566788888888888888888666666788888888888888888 67778888888888888888888666667
Q ss_pred ccCCcCCCEEeCcCCCCC
Q 026163 225 LGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 225 l~~l~~L~~L~ls~N~lt 242 (242)
+..+++|++|++++|+++
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 888888888888888763
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.4e-23 Score=193.61 Aligned_cols=157 Identities=36% Similarity=0.516 Sum_probs=109.7
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc------
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM------ 153 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~------ 153 (242)
.+++.|+++++ .+.+.+ +..+..+++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 490 ~~L~~L~L~~N---~l~~~~-p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 490 TNLNWISLSNN---RLTGEI-PKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp TTCCEEECCSS---CCCSCC-CGGGGGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred CCCCEEEccCC---ccCCcC-ChHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 34555565555 555555 555666666666666643 3345666666666777777777766665555432
Q ss_pred ----------------------------------------------------------------cCCcCCcEEEcccCcC
Q 026163 154 ----------------------------------------------------------------GRLRNLVRLDLSDNYI 169 (242)
Q Consensus 154 ----------------------------------------------------------------~~l~~L~~L~Ls~N~l 169 (242)
..+++|++|++++|++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 2245677777777777
Q ss_pred CCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 170 GGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 170 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+|.+|..++++++|+.|+|++|+++|.+|..++.+++|++|++++|+++|.+|..+.++++|++|++++|++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 777777777788888888888888877888888888888888888888888888888888888888888865
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=3.5e-22 Score=164.72 Aligned_cols=157 Identities=22% Similarity=0.185 Sum_probs=78.1
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 160 (242)
+++.|+++++ .+.+.. +..+..+++|++|++++|..+....|..+..+++|++|++++|++++..|..+.++++|+
T Consensus 57 ~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 57 NLTILWLHSN---VLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TCCEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEECCCC---ccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 4555555544 443332 445555555555555544323322244455555555555555555544444555555555
Q ss_pred EEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 161 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
+|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 55555555554444445555555555555555554333334445555555555555554444444455555555555554
Q ss_pred C
Q 026163 241 A 241 (242)
Q Consensus 241 l 241 (242)
+
T Consensus 213 l 213 (285)
T 1ozn_A 213 L 213 (285)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.9e-23 Score=174.87 Aligned_cols=157 Identities=25% Similarity=0.402 Sum_probs=120.1
Q ss_pred CCCeEEEEecc-cCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163 79 AGSVIRVSLLW-YENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157 (242)
Q Consensus 79 ~~~v~~L~l~~-~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 157 (242)
..+++.|++++ + .+.+.+ +..+..+++|++|++++|+ +++.+|..+.++++|++|++++|++++.+|..+..++
T Consensus 75 l~~L~~L~L~~~n---~l~~~~-p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 75 LPYLNFLYIGGIN---NLVGPI-PPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp CTTCSEEEEEEET---TEESCC-CGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCCCeeeCCCCC---cccccC-ChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 45788888884 6 777777 6778888888888888554 4457788888888888888888888888888888888
Q ss_pred CCcEEEcccCcCCCCCCcCcCCCC-CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163 158 NLVRLDLSDNYIGGYIPPTLGRLS-KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 158 ~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
+|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++.+|..+..+++|++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 888888888888877888888877 788888888888777776666665 777777777666666666666666666666
Q ss_pred cCCCC
Q 026163 237 SNKVA 241 (242)
Q Consensus 237 s~N~l 241 (242)
++|++
T Consensus 229 ~~N~l 233 (313)
T 1ogq_A 229 AKNSL 233 (313)
T ss_dssp CSSEE
T ss_pred CCCce
Confidence 66654
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=7.8e-22 Score=162.65 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=140.6
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc-CCCCCChhccCCc
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR-LTGIIPSEMGRLR 157 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~ 157 (242)
..+++.|+++++ .+.+.. +..+..+++|++|++++|. +++..|..+..+++|++|++++|. ++...|..+..++
T Consensus 31 ~~~l~~L~l~~n---~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGN---RISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCC---cCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 457899999998 776644 6789999999999999665 455557789999999999999997 8766688899999
Q ss_pred CCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163 158 NLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237 (242)
Q Consensus 158 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 237 (242)
+|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 99999999999998888889999999999999999997767779999999999999999997666779999999999999
Q ss_pred CCCCC
Q 026163 238 NKVAI 242 (242)
Q Consensus 238 ~N~lt 242 (242)
+|+++
T Consensus 186 ~n~l~ 190 (285)
T 1ozn_A 186 QNRVA 190 (285)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 99874
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1e-21 Score=161.10 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=137.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+ ...+..+++|++|++++|.+ ++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 62 l~~L~~L~l~~n---~l~~---~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 62 LPNVRYLALGGN---KLHD---ISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp CTTCCEEECTTS---CCCC---CGGGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCC---CCCC---chhhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 467999999988 6665 24788999999999996654 4455555789999999999999999777777899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 99999999999977777789999999999999999987777789999999999999999987778889999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+++
T Consensus 215 N~~~ 218 (272)
T 3rfs_A 215 NPWD 218 (272)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 9874
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.8e-22 Score=168.07 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=82.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccC----
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGR---- 155 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---- 155 (242)
.+++.|+++++ .+. .+ +..+..+++|++|++++|.+ . .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 104 ~~L~~L~L~~n---~l~-~l-p~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 104 SHLQHMTIDAA---GLM-EL-PDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp TTCSEEEEESS---CCC-CC-CSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred CCCCEEECCCC---Ccc-ch-hHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 35666666665 544 44 45556666666666665443 2 45555666666666666665555555544332
Q ss_pred -----CcCCcEEEcccCcCCCCCCcC-----------------------cCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 156 -----LRNLVRLDLSDNYIGGYIPPT-----------------------LGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 156 -----l~~L~~L~Ls~N~l~~~~p~~-----------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
+++|++|++++|+++ .+|.. +..+++|++|++++|.+.+.+|..++.+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 445555555555444 44444 4444555555555555544555555555555
Q ss_pred cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++|++++|.+.+.+|..+.++++|++|++++|++
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 5555555555555555555555555555555543
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=7.5e-22 Score=157.16 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=109.8
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
+++++|++++|++ ++..+..|..+++|++|++++|++++..|..|.++++|++|++++|+++...+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 6788889986654 334444678888899999999998877788888889999999999998865555678888999999
Q ss_pred eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+++|++++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999998887788888888999999999998877667788888899999998876
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=156.66 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=109.8
Q ss_pred CCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163 108 PNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 186 (242)
+.+++|++++|++ ++..+ ..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 4568888886654 33323 347888899999999999887777788888999999999999887777778888899999
Q ss_pred EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++++|++++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999887788888888999999999998877788888888999999998876
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=168.02 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=139.4
Q ss_pred CCCCcccceEeC------------CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCC
Q 026163 66 SDHCKWTGIRCN------------SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALS 133 (242)
Q Consensus 66 ~~~C~w~gv~c~------------~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 133 (242)
...|.|.++ |+ ...+++.|+++++ .+.+ +++..+..+++|++|++++|++ ++..|..+.+++
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n---~i~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~ 100 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN---RITY-ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLG 100 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS---CCCE-ECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCT
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC---cCcc-cCHHHhccCCCCCEEECCCCcc-CccCHhhcCCCC
Confidence 445677666 53 1247899999988 7665 4366899999999999996654 455566789999
Q ss_pred CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecC-CCccccccccCCCCCCcEEE
Q 026163 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSN-FLVGNIPLTLCHLSKLKILN 211 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~ 211 (242)
+|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999999999996555558999999999999999984433 47889999999999999 47766677899999999999
Q ss_pred cccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 212 LSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 212 L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++|.+++..|..+..+++|++|++++|+++
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999999888888999999999999888763
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4e-22 Score=165.92 Aligned_cols=171 Identities=27% Similarity=0.323 Sum_probs=110.2
Q ss_pred CCcccceEeCCC----------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccc-ccCchhhhcCCCCC
Q 026163 68 HCKWTGIRCNSA----------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLS-GSIPSEITALSMLQ 136 (242)
Q Consensus 68 ~C~w~gv~c~~~----------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~-~~~p~~~~~l~~L~ 136 (242)
.|.|.++.|+.. .+++.|+++++ .+. .++...+..+++|++|++++|.+.. +..+..+..+++|+
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n---~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESN---KLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC---ccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 378999999532 37899999987 665 4545668889999999998665421 11244444555555
Q ss_pred EEeccCccCC-----------------------CCCC-hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC
Q 026163 137 TLELPSSRLT-----------------------GIIP-SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF 192 (242)
Q Consensus 137 ~L~l~~n~l~-----------------------~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 192 (242)
+|++++|.++ +..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 5555555544 3222 344555556666666666555555556666666666666666
Q ss_pred Ccc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 193 LVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 193 l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 664 45666667777777777777777666666777777777777777653
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=4e-21 Score=157.36 Aligned_cols=159 Identities=22% Similarity=0.189 Sum_probs=138.0
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+. .+++..|..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..+..+..+++
T Consensus 60 l~~L~~L~l~~n---~l~-~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 60 LTKLRLLYLNDN---KLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp CTTCCEEECCSS---CCS-CCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCEEECCCC---ccC-eeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 467999999987 665 45466789999999999997665 3333455789999999999999999888888899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 99999999999976666789999999999999999977777799999999999999999976667788999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+++
T Consensus 215 N~~~ 218 (270)
T 2o6q_A 215 NPWD 218 (270)
T ss_dssp SCBC
T ss_pred CCee
Confidence 9863
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=5.2e-22 Score=173.61 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCCCcccc--eEeCCC---------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCC
Q 026163 66 SDHCKWTG--IRCNSA---------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSM 134 (242)
Q Consensus 66 ~~~C~w~g--v~c~~~---------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 134 (242)
...|.|.+ +.|... .+++.|+++++ .+.+.. +..+..+++|++|++++|.......+..|.++++
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN---SIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS---CCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCC---ccCcCC-hhHhccCccccEEECcCCcccceECccccccccc
Confidence 34565555 777422 47899999998 777665 7889999999999999766532233566899999
Q ss_pred CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcC--cCCCCCCCEEEeecCCCccccccc-cCCCCCCcEEE
Q 026163 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPT--LGRLSKLKILNLSSNFLVGNIPLT-LCHLSKLKILN 211 (242)
Q Consensus 135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ 211 (242)
|++|++++|++++..|..+.++++|++|++++|++++..|.. +..+++|++|++++|++++..|.. +..+++|++|+
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 999999999999888999999999999999999998755555 899999999999999999877766 88999999999
Q ss_pred cccCCCCCCCcccccCC
Q 026163 212 LSSNSLVGNIPPTLGHL 228 (242)
Q Consensus 212 L~~N~l~~~~p~~l~~l 228 (242)
+++|.+++..+..+..+
T Consensus 161 L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNF 177 (455)
T ss_dssp CTTCCBSCCCTTTSGGG
T ss_pred CCCCcccccChhhhhcc
Confidence 99999998777665543
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.4e-21 Score=160.47 Aligned_cols=133 Identities=27% Similarity=0.253 Sum_probs=66.0
Q ss_pred CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
.+++|++|++++|.+ ..+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++
T Consensus 75 ~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCTTCCEEECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCEEECCCCcC--CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 344444444443333 234444445555555555555555444444555555555555555555444444455555555
Q ss_pred EEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 186 LNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 186 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|++
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 555555555333333445555555555555555 3444444555555555555543
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4e-21 Score=151.35 Aligned_cols=146 Identities=22% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCcccceEeCCC----------CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163 68 HCKWTGIRCNSA----------GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT 137 (242)
Q Consensus 68 ~C~w~gv~c~~~----------~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 137 (242)
.|.|.++.|... .+++.|+++++ .+.+ +++..+..+++|++|++++|++ ++..+..+..+++|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n---~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETN---SLKS-LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCC---ccCc-CChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCE
Confidence 478999999632 23555555554 4432 2233445555555555554333 2222223445555555
Q ss_pred EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163 138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217 (242)
Q Consensus 138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 217 (242)
|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 55555555544334445555555555555555544444455555555555555555543333355555555555555544
Q ss_pred C
Q 026163 218 V 218 (242)
Q Consensus 218 ~ 218 (242)
.
T Consensus 161 ~ 161 (208)
T 2o6s_A 161 D 161 (208)
T ss_dssp C
T ss_pred e
Confidence 4
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=5.1e-21 Score=156.96 Aligned_cols=155 Identities=25% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|++.++ .+.. ...+..+++|++|++++|++ . .+ +.+..+++|++|++++|++++..+..+..+++
T Consensus 40 l~~L~~L~l~~~---~i~~---~~~l~~l~~L~~L~l~~n~l-~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNS---DIKS---VQGIQYLPNVRYLALGGNKL-H-DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTS---CCCC---CTTGGGCTTCCEEECTTSCC-C-CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccceeeeeeCCC---Cccc---ccccccCCCCcEEECCCCCC-C-Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 467889999887 5543 35688999999999997765 3 34 36889999999999999999877778899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999977777799999999999999999977777789999999999999999987777789999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+++
T Consensus 191 N~l~ 194 (272)
T 3rfs_A 191 NQLK 194 (272)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 9875
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.7e-21 Score=174.20 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=130.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+.. +..+..+++|++|++++|++ .+..|..|.++++|++|++++|++++..|..++++++|
T Consensus 26 ~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN---KITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS---CCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCC---ccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 47999999998 777655 78899999999999996654 45566779999999999999999998777779999999
Q ss_pred cEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163 160 VRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237 (242)
Q Consensus 160 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 237 (242)
++|++++|++++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999999986 356789999999999999998544554 679999999999999999998888877766655555555
Q ss_pred CCC
Q 026163 238 NKV 240 (242)
Q Consensus 238 ~N~ 240 (242)
+|.
T Consensus 181 ~n~ 183 (549)
T 2z81_A 181 LSE 183 (549)
T ss_dssp CSB
T ss_pred cCc
Confidence 554
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=5.7e-21 Score=156.76 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=126.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+.+.. +..+..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..+..+.++++|
T Consensus 28 ~~l~~L~ls~n---~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN---PLRHLG-SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC---CCCEEC-TTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCC---cccccC-HhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 46889999887 766544 66888999999999996654 44445568889999999999999997777888999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC----EE
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT----TL 234 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L 234 (242)
++|++++|.+++..+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++..+..+..+++|+ +|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 9999999999877666788999999999999999863 588889999999999999998876666665555554 56
Q ss_pred eCcCCCC
Q 026163 235 AMSNKVA 241 (242)
Q Consensus 235 ~ls~N~l 241 (242)
++++|++
T Consensus 183 ~ls~n~l 189 (276)
T 2z62_A 183 DLSLNPM 189 (276)
T ss_dssp ECCSSCC
T ss_pred ecCCCcc
Confidence 6666655
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=9.3e-21 Score=166.03 Aligned_cols=87 Identities=23% Similarity=0.199 Sum_probs=61.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ ++.+.. +..|..+++|++|++++|++ ++..+..|.++++|++|++++|++++..+..+..+++|
T Consensus 75 ~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN---NIQMIQ-ADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCC---cCceEC-HHHcCCCCCCCEEECCCCcc-CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 46888888887 666654 67778888888888885543 44445667777777777777777775555556677777
Q ss_pred cEEEcccCcCCC
Q 026163 160 VRLDLSDNYIGG 171 (242)
Q Consensus 160 ~~L~Ls~N~l~~ 171 (242)
++|++++|+++.
T Consensus 150 ~~L~L~~N~l~~ 161 (452)
T 3zyi_A 150 RELWLRNNPIES 161 (452)
T ss_dssp CEEECCSCCCCE
T ss_pred CEEECCCCCcce
Confidence 777777776653
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=3.2e-21 Score=160.45 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=106.6
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCCcC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRLRN 158 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~ 158 (242)
.+++.|+++++ .+.+..+...+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++ ..|..+..+++
T Consensus 101 ~~L~~L~l~~n---~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 101 EQLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp TTCCEEECTTS---EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCEEECCCC---cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 34455555444 33332212456667777777777444 334455556677777777777777765 45666777777
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCc-CCCEEeCc
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT-QLTTLAMS 237 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls 237 (242)
|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..++ +|++|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 77777777777766677777777777777777777765555677777777788877777777777777774 77888887
Q ss_pred CCCC
Q 026163 238 NKVA 241 (242)
Q Consensus 238 ~N~l 241 (242)
+|++
T Consensus 257 ~N~~ 260 (306)
T 2z66_A 257 QNDF 260 (306)
T ss_dssp TCCE
T ss_pred CCCe
Confidence 7765
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=166.54 Aligned_cols=158 Identities=27% Similarity=0.270 Sum_probs=134.8
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+.. +..|..+++|++|++++|. +++..|..|.++++|++|++++|++++..+..|.++++|
T Consensus 32 ~~l~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKN---RIKTLN-QDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSS---CCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCC---ccceEC-HhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 47889999988 777655 7889999999999999664 455667789999999999999999996666678899999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99999999999888888999999999999999999887888899999999999999998766677888888888888888
Q ss_pred CCC
Q 026163 240 VAI 242 (242)
Q Consensus 240 ~lt 242 (242)
.++
T Consensus 187 ~i~ 189 (477)
T 2id5_A 187 NIN 189 (477)
T ss_dssp CCC
T ss_pred cCc
Confidence 763
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.7e-20 Score=151.97 Aligned_cols=166 Identities=22% Similarity=0.233 Sum_probs=140.0
Q ss_pred CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT 146 (242)
Q Consensus 67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 146 (242)
+||.|.|.+|. ...+.++++++ ++. .+ +..+. +++++|++++|++ .+..+..+.++++|++|++++|+++
T Consensus 3 ~Cp~~~gC~C~--~~~~~l~~~~~---~l~-~~-p~~~~--~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 3 TCETVTGCTCN--EGKKEVDCQGK---SLD-SV-PSGIP--ADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp -CHHHHSSEEE--GGGTEEECTTC---CCS-SC-CSCCC--TTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCceEcC--CCCeEEecCCC---Ccc-cc-CCCCC--CCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCcCC
Confidence 46689999995 23456888776 544 34 33333 6899999996654 4555667999999999999999999
Q ss_pred CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc
Q 026163 147 GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226 (242)
Q Consensus 147 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 226 (242)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 88888899999999999999999977778899999999999999999977676789999999999999999977667899
Q ss_pred CCcCCCEEeCcCCCCC
Q 026163 227 HLTQLTTLAMSNKVAI 242 (242)
Q Consensus 227 ~l~~L~~L~ls~N~lt 242 (242)
.+++|++|++++|+|+
T Consensus 153 ~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred cCcCCCEEECCCCcCC
Confidence 9999999999999875
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.1e-20 Score=154.80 Aligned_cols=156 Identities=23% Similarity=0.184 Sum_probs=137.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. +..+..+++|++|++++|.+ + .++. ...+++|++|++++|+++ .+|..+..+++
T Consensus 30 ~~~l~~L~L~~N---~l~~~~-~~~~~~l~~L~~L~L~~n~l-~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 101 (290)
T 1p9a_G 30 PKDTTILHLSEN---LLYTFS-LATLMPYTRLTQLNLDRAEL-T-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101 (290)
T ss_dssp CTTCCEEECTTS---CCSEEE-GGGGTTCTTCCEEECTTSCC-C-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTT
T ss_pred CCCCCEEEcCCC---cCCccC-HHHhhcCCCCCEEECCCCcc-C-cccC-CCCCCcCCEEECCCCcCC-cCchhhccCCC
Confidence 357899999998 777665 77899999999999997765 2 3444 378999999999999998 78888899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 99999999999977778899999999999999999977777789999999999999999966556778999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+|+
T Consensus 182 N~l~ 185 (290)
T 1p9a_G 182 NSLY 185 (290)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 9875
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=162.89 Aligned_cols=155 Identities=26% Similarity=0.252 Sum_probs=105.8
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+.+.. +..|..+++|++|++++|++ .+..+..|.++++|++|++++|++++..+..|..+++|
T Consensus 64 ~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHEN---QIQIIK-VNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSC---CCCEEC-TTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCC---cCCeeC-HHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 46788888887 666554 67888889999999986554 44455678888888888888888886666678888888
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeec-------------------------CCCccccccccCCCCCCcEEEccc
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSS-------------------------NFLVGNIPLTLCHLSKLKILNLSS 214 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-------------------------N~l~~~~p~~l~~l~~L~~L~L~~ 214 (242)
++|++++|+++...+..+.++++|++|++++ |+++ .+| .+..+++|++|++++
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence 8888888888755444555555555555555 4444 223 244555566666666
Q ss_pred CCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 215 NSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 215 N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
|.+++..|..+.++++|++|++++|+|
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CccCccChhhhccCccCCEEECCCCce
Confidence 666655556666666666666666655
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.2e-20 Score=170.62 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=138.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. +..|..+++|++|++++|.+ ++..|..|.++++|++|++++|++++..|..|+++++
T Consensus 31 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFN---PLKILK-SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCC---CcCEeC-hhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 357999999998 777655 77899999999999996654 4556778999999999999999999888999999999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC----E
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT----T 233 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~ 233 (242)
|++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 9999999999997777889999999999999999986 5799999999999999999999987777777666554 7
Q ss_pred EeCcCCCCC
Q 026163 234 LAMSNKVAI 242 (242)
Q Consensus 234 L~ls~N~lt 242 (242)
|++++|+++
T Consensus 186 L~l~~n~l~ 194 (606)
T 3vq2_A 186 LDMSLNPID 194 (606)
T ss_dssp EECTTCCCC
T ss_pred eeccCCCcc
Confidence 888888764
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=8.2e-21 Score=148.46 Aligned_cols=151 Identities=22% Similarity=0.248 Sum_probs=129.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+. .+ + .+..+++|++|++++|.. ..++.+..+++|++|++++|++++..+..+..+++
T Consensus 43 l~~L~~L~l~~n---~i~-~l-~-~l~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANI---NVT-DL-T-GIEYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHTCCEEEEESS---CCS-CC-T-TGGGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred cCCccEEeccCC---Ccc-Ch-H-HHhcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 457889999987 666 44 3 688999999999997744 33456889999999999999999878889999999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCC-CccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNF-LVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 237 (242)
|++|++++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 9999999999998788889999999999999998 66 556 68999999999999999985 44 68899999999999
Q ss_pred CCCCC
Q 026163 238 NKVAI 242 (242)
Q Consensus 238 ~N~lt 242 (242)
+|+|.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 99874
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=176.50 Aligned_cols=170 Identities=20% Similarity=0.218 Sum_probs=141.1
Q ss_pred CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC
Q 026163 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT 146 (242)
Q Consensus 67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 146 (242)
..|.|..|.+ ...+++.|+++++ .+.+.. +..|..+++|++|++++|+......|..|.++++|++|++++|+++
T Consensus 12 s~~~L~~vP~-lp~~l~~LdLs~N---~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 12 RFCNLTQVPQ-VLNTTERLLLSFN---YIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCSSCCCS-SCTTCCEEEEESC---CCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred cCCCCCCCCC-CCCCcCEEECCCC---cCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3467888887 6789999999998 777665 7889999999999999775543333677999999999999999999
Q ss_pred CCCChhccCCcCCcEEEcccCcCCCCCCcC--cCCCCCCCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcc
Q 026163 147 GIIPSEMGRLRNLVRLDLSDNYIGGYIPPT--LGRLSKLKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPP 223 (242)
Q Consensus 147 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~ 223 (242)
+..|..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 888999999999999999999999766665 8999999999999999987654 5789999999999999999877777
Q ss_pred cccCC--cCCCEEeCcCCCC
Q 026163 224 TLGHL--TQLTTLAMSNKVA 241 (242)
Q Consensus 224 ~l~~l--~~L~~L~ls~N~l 241 (242)
.+..+ ++|+.|++++|.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBS
T ss_pred HcccccCCccceEECCCCcc
Confidence 66655 5566666665554
No 35
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.1e-20 Score=149.26 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=100.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCCcC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRLRN 158 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~ 158 (242)
..++.|+++++ .+.+.. +..|..+++|++|++++|+.+++..+..|.++++|++|++++ |++++..+..|.++++
T Consensus 31 ~~l~~L~l~~n---~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIET---HLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESC---CCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCC---cceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 46888888887 665543 667888888888888866534433344677888888888887 8888666667778888
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCC---EEEeecC-CCccccccccCCCCCCc-EEEcccCCCCCCCcccccCCcCCCE
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLK---ILNLSSN-FLVGNIPLTLCHLSKLK-ILNLSSNSLVGNIPPTLGHLTQLTT 233 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~ 233 (242)
|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|.++ .+|......++|++
T Consensus 107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 8888888887774 554 66666666 6666666 66654444566666666 6666666655 33322222244555
Q ss_pred EeCcCC
Q 026163 234 LAMSNK 239 (242)
Q Consensus 234 L~ls~N 239 (242)
|++++|
T Consensus 184 L~L~~n 189 (239)
T 2xwt_C 184 VYLNKN 189 (239)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 555555
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1e-20 Score=161.30 Aligned_cols=168 Identities=23% Similarity=0.165 Sum_probs=134.6
Q ss_pred CcccceEeC----------CCCCeEEEEecccCCCCceeeeCCCCcC-CCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163 69 CKWTGIRCN----------SAGSVIRVSLLWYENDNMKGELGRFNFS-CFPNLKSFKIHSNYLLSGSIPSEITALSMLQT 137 (242)
Q Consensus 69 C~w~gv~c~----------~~~~v~~L~l~~~~~~~~~~~i~~~~~~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 137 (242)
|.+..+.|. ....++.|+++++ .+.+.. +..+. .+++|++|++++|++ ++..+..|..+++|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N---~l~~l~-~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHN---NLSRLR-AEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRY 92 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSS---CCCEEC-TTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCC---CCCccC-hhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCE
Confidence 556666663 2335788999887 776654 66676 899999999996654 4444566889999999
Q ss_pred EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcccccccc---CCCCCCcEEEccc
Q 026163 138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTL---CHLSKLKILNLSS 214 (242)
Q Consensus 138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~ 214 (242)
|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 9999999997777788999999999999999998778889999999999999999996444444 5789999999999
Q ss_pred CCCCCCCcccccCCcC--CCEEeCcCCCC
Q 026163 215 NSLVGNIPPTLGHLTQ--LTTLAMSNKVA 241 (242)
Q Consensus 215 N~l~~~~p~~l~~l~~--L~~L~ls~N~l 241 (242)
|.+++..+..+..++. ++.|++++|++
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 9999666577788876 48899999986
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=161.36 Aligned_cols=137 Identities=23% Similarity=0.228 Sum_probs=92.8
Q ss_pred CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
.|..+++|++|++++++.+....+..|.++++|++|++++|+++ .+| .+..+++|++|++++|++++..|..+..+++
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCcc
Confidence 34444444444444333332222234566667777777777776 344 3566777777777777777666777777788
Q ss_pred CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 88888888888777777777788888888888888766666677788888888888865
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=9e-21 Score=158.45 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=124.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCc--CCCCCCCEEEecCCCcccccCchhhhcC-----CCCCEEeccCccCCCCCCh
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNF--SCFPNLKSFKIHSNYLLSGSIPSEITAL-----SMLQTLELPSSRLTGIIPS 151 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~ 151 (242)
..+++.|+++++ .+.+.+ +..+ ..+++|++|++++|.+ ++. |..+..+ ++|++|++++|++++..|.
T Consensus 94 l~~L~~L~L~~n---~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENL---EVTGTA-PPPLLEATGPDLNILNLRNVSW-ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEE---BCBSCC-CCCSSSCCSCCCSEEEEESCBC-SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCCccEEEccCC---cccchh-HHHHHHhcCCCccEEEccCCCC-cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 568999999998 888887 4444 8999999999996665 444 7777776 8999999999999988878
Q ss_pred hccCCcCCcEEEcccCcCCCC--CCcCc--CCCCCCCEEEeecCCCcc--ccc-cccCCCCCCcEEEcccCCCCCCCc-c
Q 026163 152 EMGRLRNLVRLDLSDNYIGGY--IPPTL--GRLSKLKILNLSSNFLVG--NIP-LTLCHLSKLKILNLSSNSLVGNIP-P 223 (242)
Q Consensus 152 ~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~ 223 (242)
.++++++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++..| .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 999999999999999998754 23333 788889999999998883 222 334577888888888888887664 4
Q ss_pred cccCCcCCCEEeCcCCCCC
Q 026163 224 TLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 224 ~l~~l~~L~~L~ls~N~lt 242 (242)
.+..+++|++|++++|+|+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS
T ss_pred hhhhcCCCCEEECCCCccC
Confidence 5566788888888888764
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.3e-20 Score=167.85 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=132.0
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+.+ +++..|..+++|++|++++|++ ++..|..|.++++|++|+|++|++++..+..|.++++|
T Consensus 52 ~~~~~LdLs~N---~i~~-l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFN---PLRH-LGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTS---CCCE-ECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCC---CCCC-CCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 47899999998 7765 4478899999999999997665 44445578999999999999999997777789999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC----CEE
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL----TTL 234 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L 234 (242)
++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..++++ ..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 999999999997777789999999999999999976 457788999999999999999998777777655443 367
Q ss_pred eCcCCCCC
Q 026163 235 AMSNKVAI 242 (242)
Q Consensus 235 ~ls~N~lt 242 (242)
+++.|.++
T Consensus 207 ~ls~n~l~ 214 (635)
T 4g8a_A 207 DLSLNPMN 214 (635)
T ss_dssp ECTTCCCC
T ss_pred hcccCccc
Confidence 77777653
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=8.6e-21 Score=165.88 Aligned_cols=134 Identities=22% Similarity=0.289 Sum_probs=121.8
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
++|++|++++|++ .+..|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..|..+..+++|++|+
T Consensus 275 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 6899999996554 556778899999999999999999988888999999999999999999988888999999999999
Q ss_pred eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 9999999888999999999999999999999766677889999999999999875
No 41
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.83 E-value=5e-20 Score=143.54 Aligned_cols=113 Identities=29% Similarity=0.335 Sum_probs=97.2
Q ss_pred CCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 109 NLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
++++|++++|++ ++..+. .+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 889999997665 333332 388899999999999999988888999999999999999999988888899999999999
Q ss_pred eecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222 (242)
Q Consensus 188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 222 (242)
+++|++++..|..+..+++|++|++++|++.+..+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999998888889999999999999999986544
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.2e-20 Score=145.44 Aligned_cols=135 Identities=22% Similarity=0.213 Sum_probs=117.2
Q ss_pred CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 186 (242)
.+++++|++++|++ ++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 56899999997665 44444457899999999999999997666678999999999999999997766678999999999
Q ss_pred EeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 99999999776767899999999999999999766677899999999999999864
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=4.4e-20 Score=166.93 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
.+++.|+++++ .+.+ + +..+..+++|++|++++|.+ .+..| ..+..+++|++|++++|.+++..|..+.++++
T Consensus 376 ~~L~~L~L~~n---~l~~-~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 376 NSLRHLDLSFN---GAII-M-SANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp SCCCEEECCSC---SEEE-E-CCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred CcccEeECCCC---cccc-c-hhhccCCCCCCeeECCCCcc-CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 34555555554 3332 3 35555666666666664433 22333 34555666666666666666555555556666
Q ss_pred CcEEEcccCcCCC-CCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCc
Q 026163 159 LVRLDLSDNYIGG-YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMS 237 (242)
Q Consensus 159 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 237 (242)
|++|++++|++++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 6666666666554 245555556666666666666655555555556666666666666655555555555566666666
Q ss_pred CCCC
Q 026163 238 NKVA 241 (242)
Q Consensus 238 ~N~l 241 (242)
+|+|
T Consensus 530 ~N~l 533 (606)
T 3vq2_A 530 FNRI 533 (606)
T ss_dssp TSCC
T ss_pred CCcC
Confidence 5554
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=6.8e-20 Score=165.72 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=140.6
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
..++.|+++++ .+.+.. +..|..+++|++|++++|.+ .+..|..|.++++|++|++++|++++..|..++++++|
T Consensus 33 ~~l~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFN---VLPTIQ-NTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTC---CCSEEC-TTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCC---ccCcCC-hhHhccCccceEEECCCCcc-ceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 47899999998 777655 78999999999999996654 45668889999999999999999998889999999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCC--EEeCc
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLT--TLAMS 237 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~ls 237 (242)
++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..|..++.+++|+ +|+++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 9999999999977688899999999999999999974434555699999999999999988888899999999 89999
Q ss_pred CCCCC
Q 026163 238 NKVAI 242 (242)
Q Consensus 238 ~N~lt 242 (242)
+|+++
T Consensus 188 ~n~l~ 192 (606)
T 3t6q_A 188 GNDIA 192 (606)
T ss_dssp TCCCC
T ss_pred CCccC
Confidence 99874
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=8e-20 Score=160.10 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=98.0
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCc------------------------ccccCchhhhcCCC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYL------------------------LSGSIPSEITALSM 134 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~------------------------~~~~~p~~~~~l~~ 134 (242)
..+++.|+++++ .+.+ +++..+..+++|++|++++|.+ +....+..+..+++
T Consensus 122 l~~L~~L~L~~n---~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 122 LASLNTLELFDN---WLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp CTTCCEEECCSS---CCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred cccCCEEECCCC---cCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 346777777766 5443 2244566666666666664443 22111223455566
Q ss_pred CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEccc
Q 026163 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSS 214 (242)
Q Consensus 135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 214 (242)
|++|++++|++++ +| .+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus 198 L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp CCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 6666666666653 33 355666666777777776666666677777777777777777766666677777777777777
Q ss_pred CCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 215 NSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 215 N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
|++++..+..+..+++|+.|++++|++
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CcCCccChHHhccccCCCEEEccCCCc
Confidence 777755556666777777777777764
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=6.1e-20 Score=150.58 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=110.7
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. +..+..+++|++|++++|.+ .+..+..+.++++|++|++++|++++..+..+..+++
T Consensus 51 l~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRC---EIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTC---CCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred ccCCcEEECCCC---cCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 456777777776 555433 55677777788888875544 3344455777777777777777777655556777777
Q ss_pred CcEEEcccCcCCCC-CCcCcCCCCCCCEEEeecCCCcccccccc---------------------------CCCCCCcEE
Q 026163 159 LVRLDLSDNYIGGY-IPPTLGRLSKLKILNLSSNFLVGNIPLTL---------------------------CHLSKLKIL 210 (242)
Q Consensus 159 L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---------------------------~~l~~L~~L 210 (242)
|++|++++|++++. +|..+..+++|++|++++|++++..+..+ ....+|++|
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L 205 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence 77777777777653 46677777777777777777765433222 223378888
Q ss_pred EcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 211 NLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 211 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++++|.+++..+..+..+++|++|++++|+++
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 88888888665666788999999999999874
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=6.5e-20 Score=157.57 Aligned_cols=154 Identities=18% Similarity=0.102 Sum_probs=118.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.+++.++ . .+.+++..+..+++|++|++++|.+ .+..+..+..+++|++|++++|++++..|..+.++++|
T Consensus 45 ~~l~~l~l~~~---~-l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS---T-MRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESC---E-ESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCC---c-hhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46777888775 4 3445455578899999999996654 44445578889999999999999998778888999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|++++|+++...+..+.++++|++|++++|++++..|..+..+++|++|++++|.+++.. +..+++|++|++++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence 99999999998544445688999999999999999777778899999999999999988542 344455555555544
Q ss_pred CC
Q 026163 240 VA 241 (242)
Q Consensus 240 ~l 241 (242)
.+
T Consensus 197 ~l 198 (390)
T 3o6n_A 197 LL 198 (390)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.1e-19 Score=166.60 Aligned_cols=159 Identities=23% Similarity=0.231 Sum_probs=138.6
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. +..|..+++|++|++++|. +.+..|..+.++++|++|++++|++++..+..|.++++
T Consensus 24 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHN---QLRRLP-AANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCSS---CCCCCC-GGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCC---CCCCcC-HHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 468999999998 776644 6679999999999999665 45667888999999999999999999655557999999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc--CCcCCCEEeC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG--HLTQLTTLAM 236 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~l 236 (242)
|++|++++|++++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 99999999999977778899999999999999999988888899999999999999999977776654 5689999999
Q ss_pred cCCCCC
Q 026163 237 SNKVAI 242 (242)
Q Consensus 237 s~N~lt 242 (242)
++|+++
T Consensus 179 ~~n~l~ 184 (680)
T 1ziw_A 179 SSNQIK 184 (680)
T ss_dssp TTCCCC
T ss_pred CCCccc
Confidence 999764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.8e-19 Score=151.58 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=111.1
Q ss_pred CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163 69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL 138 (242)
Q Consensus 69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 138 (242)
|.|..+.|.. ..+++.|+++++ .+.+.. +..+..+++|++|++++|.+ ++..|..+.++++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN---DISELR-KDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC---cCCccC-HhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEE
Confidence 6788888852 237899999988 766544 67899999999999996654 45567788899999999
Q ss_pred eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc------------------------
Q 026163 139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV------------------------ 194 (242)
Q Consensus 139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------------------------ 194 (242)
++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 99999887 4554443 56666666666666444444555666666666555553
Q ss_pred ----------------------cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 195 ----------------------GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 195 ----------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 22333455556666666666666655555566666666666666655
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=9.5e-20 Score=164.95 Aligned_cols=153 Identities=18% Similarity=0.102 Sum_probs=121.0
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCc
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLV 160 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 160 (242)
+++.+++.++ . .+.+|+..+..+++|++|++++|. +.+..|..|..+++|++|++++|.+++..|..|+++++|+
T Consensus 52 ~l~~l~l~~~---~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFKNS---T-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCSEEEESSC---E-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CceEEEeeCC---C-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4567777664 4 345646667889999999999665 4455566789999999999999999988888889999999
Q ss_pred EEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 161 RLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 161 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
+|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++.. ++.+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999999655556789999999999999999888888999999999999999998643 3344555555555554
Q ss_pred C
Q 026163 241 A 241 (242)
Q Consensus 241 l 241 (242)
+
T Consensus 204 l 204 (597)
T 3oja_B 204 L 204 (597)
T ss_dssp C
T ss_pred c
Confidence 3
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=6.5e-21 Score=173.85 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=130.2
Q ss_pred cccceEe--CCCCCeEEEEecccCCCCceee-----------------eCCCCcC--CCCCCCEEEecCCCcccccCchh
Q 026163 70 KWTGIRC--NSAGSVIRVSLLWYENDNMKGE-----------------LGRFNFS--CFPNLKSFKIHSNYLLSGSIPSE 128 (242)
Q Consensus 70 ~w~gv~c--~~~~~v~~L~l~~~~~~~~~~~-----------------i~~~~~~--~l~~L~~L~l~~~~~~~~~~p~~ 128 (242)
...|+.- ....+++.|+++++ .+.+. + |..+. .+++|++|++++|+ +.+.+|..
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n---~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~-l~~~~p~~ 268 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNS---PFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCP-NLTKLPTF 268 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCT-TCSSCCTT
T ss_pred CCccCCHHHhcccCCCEEECcCC---ccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCc-CCccChHH
Confidence 4455432 13567889999888 77774 6 67777 89999999998554 45688888
Q ss_pred hhcCCCCCEEeccCcc-CCC-CCChhccCC------cCCcEEEcccCcCCCCCCc--CcCCCCCCCEEEeecCCCccccc
Q 026163 129 ITALSMLQTLELPSSR-LTG-IIPSEMGRL------RNLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIP 198 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p 198 (242)
+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|+++|.+|
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 8899999999999998 887 788877776 88899999988888 7887 78888888888888888887787
Q ss_pred cccCCCCCCcEEEcccCCCCCCCcccccCCcC-CCEEeCcCCCCC
Q 026163 199 LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQ-LTTLAMSNKVAI 242 (242)
Q Consensus 199 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~ls~N~lt 242 (242)
.++.+++|++|++++|.++ .+|..+..+++ |++|++++|+++
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 7777777888888887777 67777777777 777777777663
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=142.81 Aligned_cols=148 Identities=22% Similarity=0.232 Sum_probs=129.2
Q ss_pred CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163 69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL 138 (242)
Q Consensus 69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 138 (242)
|.|..+.|.. ...++.|+++++ .+.+..+...|..+++|++|++++|.+ ++..+..|..+++|++|
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N---~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN---EFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEI 86 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSS---CCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEE
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCC---cCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEE
Confidence 6777788742 235789999998 887765456789999999999996654 44555679999999999
Q ss_pred eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
++++|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999888888999999999999999999888999999999999999999999888999999999999999999987
Q ss_pred CC
Q 026163 219 GN 220 (242)
Q Consensus 219 ~~ 220 (242)
+.
T Consensus 167 c~ 168 (220)
T 2v70_A 167 CN 168 (220)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.82 E-value=5.2e-20 Score=140.11 Aligned_cols=133 Identities=26% Similarity=0.227 Sum_probs=102.3
Q ss_pred CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 186 (242)
.++|++|++++|++..+.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888866654356777777888888888888888754 667788888888888888886677777778888888
Q ss_pred EeecCCCcccc-ccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeCcCCCC
Q 026163 187 NLSSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 187 ~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~N~l 241 (242)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888887532 2677888888888888888875544 3677888888888888865
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=8.5e-20 Score=146.72 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=130.0
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 157 (242)
...+++.|+++++ .....+++..|..+++|++|++++++.+++..+..|..+++|++|++++|++++ +|. +..++
T Consensus 53 ~l~~L~~L~l~~n---~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECC---SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred CCCCCcEEeCCCC---CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 3467999999987 645556567899999999999997244444444568899999999999999995 666 88888
Q ss_pred CCc---EEEcccC-cCCCCCCcCcCCCCCCC-EEEeecCCCccccccccCCCCCCcEEEcccCC-CCCCCcccccCC-cC
Q 026163 158 NLV---RLDLSDN-YIGGYIPPTLGRLSKLK-ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHL-TQ 230 (242)
Q Consensus 158 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~ 230 (242)
+|+ +|++++| .+++..+..+..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 888 9999999 99866667799999999 9999999999 455443334899999999995 886666778899 99
Q ss_pred CCEEeCcCCCCC
Q 026163 231 LTTLAMSNKVAI 242 (242)
Q Consensus 231 L~~L~ls~N~lt 242 (242)
|++|++++|+++
T Consensus 207 L~~L~l~~N~l~ 218 (239)
T 2xwt_C 207 PSLLDVSQTSVT 218 (239)
T ss_dssp CSEEECTTCCCC
T ss_pred CcEEECCCCccc
Confidence 999999999875
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2e-19 Score=151.22 Aligned_cols=136 Identities=23% Similarity=0.290 Sum_probs=91.3
Q ss_pred CcCCCCCCCEEEecCCCccc-ccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLS-GSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
.+..+++|++|++++|.+.. +..+..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+..++
T Consensus 140 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT
T ss_pred HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCC
Confidence 35556666666666544321 233445666666666666666665 3444332 5677777777777666666777777
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+|+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 8888888888777666666777778888888888777 66777777778888888877764
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=5.1e-19 Score=151.98 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+.. +..+..+++|++|++++|.+ .+..|..+.++++|++|++++|+++...+..+.++++|
T Consensus 69 ~~L~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDL---QIEEID-TYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCcEEECCCC---cccccC-hhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 45666666665 444332 45566666666666664443 33334445566666666666666663333334556666
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 194 (242)
++|++++|++++..|..+..+++|++|++++|+++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 66666666665555555555555565555555554
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=2.5e-19 Score=161.99 Aligned_cols=156 Identities=22% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
.+++.|+++++ .+.+.. +..+..+++|++|++++|.+. +..| ..+..+++|++|++++|.+++..|..+..+++
T Consensus 376 ~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 376 SHLQSLNLSYN---EPLSLK-TEAFKECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTCCEEECCSC---SCEEEC-TTTTTTCTTCSEEECTTCCEE-CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred CCCCEEECCCC---cCCcCC-HHHhcCCccCCeEECCCCcCC-CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 34555555555 444433 455555566666666544332 2222 22455555555555555555555555555555
Q ss_pred CcEEEcccCcCCCC---CCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEe
Q 026163 159 LVRLDLSDNYIGGY---IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLA 235 (242)
Q Consensus 159 L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 235 (242)
|++|++++|++++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.++++| +|+
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 55555555555431 12334455555555555555554445555555555555555555555555555555555 555
Q ss_pred CcCCCC
Q 026163 236 MSNKVA 241 (242)
Q Consensus 236 ls~N~l 241 (242)
+++|++
T Consensus 530 L~~N~l 535 (606)
T 3t6q_A 530 LASNHI 535 (606)
T ss_dssp CCSSCC
T ss_pred CcCCcc
Confidence 555544
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=159.76 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=133.0
Q ss_pred CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc--cCchhhhcCCCCCEEeccCccCCCCCChh-c
Q 026163 77 NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG--SIPSEITALSMLQTLELPSSRLTGIIPSE-M 153 (242)
Q Consensus 77 ~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~ 153 (242)
....+++.|+++++ .+.+.+ +..+..+++|++|++++|++ .+ .+|..+..+++|++|++++|++++.+|.. +
T Consensus 321 ~~l~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNN---LLTDTV-FENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SSCCCCCEEECCSS---CCCTTT-TTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hhCCcccEEEeECC---ccChhh-hhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 34567889999988 777766 67889999999999997665 33 45667889999999999999999756654 7
Q ss_pred cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCC
Q 026163 154 GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLT 232 (242)
Q Consensus 154 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~ 232 (242)
..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 8889999999999999877777665 78999999999999 78888889999999999999999 46654 88999999
Q ss_pred EEeCcCCCCC
Q 026163 233 TLAMSNKVAI 242 (242)
Q Consensus 233 ~L~ls~N~lt 242 (242)
+|++++|+++
T Consensus 472 ~L~l~~N~~~ 481 (520)
T 2z7x_B 472 KIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCBC
T ss_pred EEECcCCCCc
Confidence 9999999874
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=162.95 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=133.3
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLR 157 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 157 (242)
..+++.|+++++ .+.+.. +. +..+++|++|++++|.+ .+..| ..+..+++|++|++++|.+++..|..+.+++
T Consensus 372 ~~~L~~L~l~~n---~l~~~~-~~-~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 372 TTSLKYLDLSFN---GVITMS-SN-FLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp CSCCCEEECCSC---SEEEEE-EE-EETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cCccCEEECCCC---cccccc-cc-ccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 345667777666 555543 33 78889999999986654 33333 4578899999999999999988888999999
Q ss_pred CCcEEEcccCcCC-CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163 158 NLVRLDLSDNYIG-GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 158 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
+|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 9999999999997 578889999999999999999999888989999999999999999999887788999999999999
Q ss_pred cCCCCC
Q 026163 237 SNKVAI 242 (242)
Q Consensus 237 s~N~lt 242 (242)
++|+++
T Consensus 526 ~~N~~~ 531 (570)
T 2z63_A 526 HTNPWD 531 (570)
T ss_dssp CSSCBC
T ss_pred cCCccc
Confidence 999874
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=161.36 Aligned_cols=159 Identities=22% Similarity=0.286 Sum_probs=138.9
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. +..|..+++|++|++++|++ ++..|..|.++++|++|++++|++++..|..|.++++
T Consensus 27 ~~~l~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFN---PLRHLG-SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSC---CCCEEC-TTTTTTCSSCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCC---ccCccC-hhHhhCCCCceEEECCCCcC-CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 457899999998 776654 77899999999999997654 4455667899999999999999999888889999999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC----CE
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL----TT 233 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~ 233 (242)
|++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999996666579999999999999999987 468899999999999999999998778888888888 88
Q ss_pred EeCcCCCCC
Q 026163 234 LAMSNKVAI 242 (242)
Q Consensus 234 L~ls~N~lt 242 (242)
+++++|.++
T Consensus 182 L~l~~n~l~ 190 (570)
T 2z63_A 182 LDLSLNPMN 190 (570)
T ss_dssp EECTTCCCC
T ss_pred cccCCCCce
Confidence 999999764
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=154.73 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=134.5
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchh-hhcCCCCCEEeccCccCCCCCC-hhccC
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSE-ITALSMLQTLELPSSRLTGIIP-SEMGR 155 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p-~~~~~ 155 (242)
...+++.|+++++ .+.+.. +..+..+++|++|++++|++ + .+|.. +.++++|++|++++|++++..+ ..+.+
T Consensus 74 ~l~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 147 (353)
T 2z80_A 74 RCVNLQALVLTSN---GINTIE-EDSFSSLGSLEHLDLSYNYL-S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147 (353)
T ss_dssp TCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTT
T ss_pred cCCCCCEEECCCC---ccCccC-HhhcCCCCCCCEEECCCCcC-C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhcc
Confidence 3568999999988 777654 77899999999999997765 3 45554 8899999999999999995433 47899
Q ss_pred CcCCcEEEcccC-cCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163 156 LRNLVRLDLSDN-YIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL 234 (242)
Q Consensus 156 l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 234 (242)
+++|++|++++| .++...+..+.++++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 999999999999 4776667789999999999999999998889999999999999999999974333445568999999
Q ss_pred eCcCCCCC
Q 026163 235 AMSNKVAI 242 (242)
Q Consensus 235 ~ls~N~lt 242 (242)
++++|+++
T Consensus 228 ~L~~n~l~ 235 (353)
T 2z80_A 228 ELRDTDLD 235 (353)
T ss_dssp EEESCBCT
T ss_pred ECCCCccc
Confidence 99999874
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=9.3e-20 Score=152.27 Aligned_cols=153 Identities=25% Similarity=0.265 Sum_probs=123.1
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccccc--Cchhh--hcCCCCCEEeccCccCCCC--CC-hh
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGS--IPSEI--TALSMLQTLELPSSRLTGI--IP-SE 152 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~--~p~~~--~~l~~L~~L~l~~n~l~~~--~p-~~ 152 (242)
.+++.|+++++ .+.+.. +..+..+++|++|++++|+. .+. +|..+ ..+++|++|++++|++++. ++ ..
T Consensus 149 ~~L~~L~L~~N---~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 149 PGLKVLSIAQA---HSLNFS-CEQVRVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp TTCCEEEEESC---SCCCCC-TTTCCCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred CCCcEEEeeCC---CCccch-HHHhccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 57888888887 665544 67889999999999997664 233 34444 7889999999999999831 22 33
Q ss_pred ccCCcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC
Q 026163 153 MGRLRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL 231 (242)
Q Consensus 153 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 231 (242)
+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 4678999999999999997765 45677899999999999999 7787766 8999999999999965 65 8899999
Q ss_pred CEEeCcCCCCC
Q 026163 232 TTLAMSNKVAI 242 (242)
Q Consensus 232 ~~L~ls~N~lt 242 (242)
++|++++|+|+
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 99999999985
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=6e-19 Score=159.69 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+.. +..|..+++|++|++++|. +.+..|..|.++++|++|++++|.+++..+..|.++++|
T Consensus 75 ~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDL---QIEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCC---CCCCCC-hHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 46788888877 666544 6677888888888888555 444445556778888888888888875545556777888
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccc-----------------------------------------
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIP----------------------------------------- 198 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----------------------------------------- 198 (242)
++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 888888888877666677777777777777776654211
Q ss_pred ------------------cccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 199 ------------------LTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 199 ------------------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
..+..+++|+.|++++|.+++..|..++.+++|+.|++++|+++
T Consensus 230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 12344566666777777766666666666667777777666653
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=157.25 Aligned_cols=157 Identities=23% Similarity=0.212 Sum_probs=129.6
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCch-hhhcCCCCCEEeccCccCCCCCChhccCC
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPS-EITALSMLQTLELPSSRLTGIIPSEMGRL 156 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 156 (242)
...+++.|+++++ .+.+.. +..|..+++|++|++++|++ . .+|. .|.++++|++|++++|++++..|..+.++
T Consensus 54 ~l~~L~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 54 SFPHLEELELNEN---IVSAVE-PGAFNNLFNLRTLGLRSNRL-K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECCSSCC-C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCCEEECCCC---ccCEeC-hhhhhCCccCCEEECCCCcC-C-ccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 3467899999887 777655 78899999999999997665 3 4554 47889999999999999998888888999
Q ss_pred cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 99999999999998878888999999999999999998766667888888888888888888766667777777777777
Q ss_pred cCCC
Q 026163 237 SNKV 240 (242)
Q Consensus 237 s~N~ 240 (242)
++|+
T Consensus 208 ~~~~ 211 (477)
T 2id5_A 208 SHWP 211 (477)
T ss_dssp ECCT
T ss_pred CCCc
Confidence 7654
No 65
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.9e-19 Score=139.97 Aligned_cols=146 Identities=22% Similarity=0.268 Sum_probs=127.2
Q ss_pred CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163 69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL 138 (242)
Q Consensus 69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 138 (242)
|.|..+.|.. ..+++.|+++++ .+.+.. +..|..+++|++|++++|.+ ++..|..|.++++|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n---~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQN---TIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSL 85 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSS---CCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEE
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCC---cCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEE
Confidence 6788888852 236899999998 776544 77899999999999996654 55668889999999999
Q ss_pred eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
++++|+++...+..|.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999666666899999999999999999888999999999999999999999877778999999999999999986
Q ss_pred C
Q 026163 219 G 219 (242)
Q Consensus 219 ~ 219 (242)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=6.5e-19 Score=148.03 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=110.8
Q ss_pred CCcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163 68 HCKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT 137 (242)
Q Consensus 68 ~C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 137 (242)
.|.|+.+.|.. ...++.|+++++ .+.+.. +..+..+++|++|++++|.+ ++..|..+..+++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---KITEIK-DGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS---CCCCBC-TTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCE
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCC---cCCEeC-hhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCE
Confidence 46788888852 246888999887 766544 66789999999999996654 4555778889999999
Q ss_pred EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCC--------------------------cCcCCCCCCCEEEeecC
Q 026163 138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIP--------------------------PTLGRLSKLKILNLSSN 191 (242)
Q Consensus 138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------------------------~~~~~l~~L~~L~L~~N 191 (242)
|++++|+++ .+|..+. ++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999999887 4444332 455555555555554333 34444455555555555
Q ss_pred CCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 192 FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 192 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 544 2333322 56677777777777666777888888888888888764
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=7.5e-20 Score=171.33 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=130.8
Q ss_pred CCCCeEEEEecccCCCCcee-----------------eeCCCCcC--CCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163 78 SAGSVIRVSLLWYENDNMKG-----------------ELGRFNFS--CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL 138 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~-----------------~i~~~~~~--~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 138 (242)
...+++.|+++++ .+.+ .+ |..+. .+++|++|++++|+ +.+.+|..+.++++|++|
T Consensus 446 ~L~~L~~L~Ls~N---~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 446 RLTKLQIIYFANS---PFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GCTTCCEEEEESC---CCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEE
T ss_pred cCCCCCEEECcCC---cCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEE
Confidence 4567899999998 7777 36 66666 99999999999655 457889889999999999
Q ss_pred eccCcc-CCC-CCChhccCCc-------CCcEEEcccCcCCCCCCc--CcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 139 ELPSSR-LTG-IIPSEMGRLR-------NLVRLDLSDNYIGGYIPP--TLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 139 ~l~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
++++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .+.++++|++|++++|+++ .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999998 887 7787666555 8999999999998 7887 8888999999999999988 777 88888889
Q ss_pred cEEEcccCCCCCCCcccccCCcC-CCEEeCcCCCCC
Q 026163 208 KILNLSSNSLVGNIPPTLGHLTQ-LTTLAMSNKVAI 242 (242)
Q Consensus 208 ~~L~L~~N~l~~~~p~~l~~l~~-L~~L~ls~N~lt 242 (242)
+.|++++|.++ .+|..+..+++ |++|++++|+++
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 99999999888 78888888888 888888888764
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=9.7e-19 Score=160.24 Aligned_cols=160 Identities=25% Similarity=0.257 Sum_probs=93.5
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCccc-------------------------ccCchhhhcCCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLS-------------------------GSIPSEITALSM 134 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~-------------------------~~~p~~~~~l~~ 134 (242)
.+++.|+++++ .+.+.+++..+..+++|++|++++|++.. +.+|..+..+++
T Consensus 405 ~~L~~L~L~~N---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 405 GHLEVLDLGLN---EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCCEEECCSS---CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCEEeCCCC---cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 45666666665 55555544556666666666666444211 234445555666
Q ss_pred CCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCC--------CcCcCCCCCCCEEEeecCCCccccccccCCCCC
Q 026163 135 LQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYI--------PPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSK 206 (242)
Q Consensus 135 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 206 (242)
|++|++++|++++..+..+.++++|++|++++|++++.. +..+..+++|++|++++|+++...+..|..+++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 666666666666555555666666666666666665321 112555666666666666666333334666677
Q ss_pred CcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 207 LKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 207 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
|++|++++|++++..+..+..+++|++|++++|+|+
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 777777777776544455566677777777777653
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=137.15 Aligned_cols=110 Identities=22% Similarity=0.318 Sum_probs=93.5
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
+++++|++++|++ ..+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 5789999997766 46788888899999999999999977777888999999999999999877777888999999999
Q ss_pred eecCCCccccccccCCCCCCcEEEcccCCCCC
Q 026163 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219 (242)
Q Consensus 188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 219 (242)
+++|+++...+..|..+++|+.|++++|++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999986656668888999999999998864
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.79 E-value=7e-20 Score=136.68 Aligned_cols=131 Identities=24% Similarity=0.248 Sum_probs=113.6
Q ss_pred CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 026163 106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKI 185 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 185 (242)
..+++++|++++|++..+.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999977764367888888999999999999999865 77899999999999999999778888888999999
Q ss_pred EEeecCCCccc-cccccCCCCCCcEEEcccCCCCCCCc---ccccCCcCCCEEeCcC
Q 026163 186 LNLSSNFLVGN-IPLTLCHLSKLKILNLSSNSLVGNIP---PTLGHLTQLTTLAMSN 238 (242)
Q Consensus 186 L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~ 238 (242)
|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999963 34789999999999999999997655 5788999999999874
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=5.3e-19 Score=159.91 Aligned_cols=158 Identities=23% Similarity=0.295 Sum_probs=131.5
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCC-CCCChhccCCcCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLT-GIIPSEMGRLRNL 159 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L 159 (242)
.++.+++..+ +.....+...+..+++++.++++.|. +.+..+..+..++.+++|++++|++. +..|..+..+++|
T Consensus 421 ~L~~l~l~~~---~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 421 QLEHLDFQHS---NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TCCEEECTTS---EEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccchhhhhc---cccccccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 4455555544 44444445567788888888888544 44566677888999999999999754 4567889999999
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCC-cCCCEEeCcC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL-TQLTTLAMSN 238 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~ 238 (242)
++|++++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+ ++|++|++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999998889999999999999999999998888889999999999999999999889999888 6899999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+++
T Consensus 577 Np~~ 580 (635)
T 4g8a_A 577 NDFA 580 (635)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 9874
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=150.12 Aligned_cols=154 Identities=24% Similarity=0.243 Sum_probs=124.4
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc-cCc--hhhhcCCCCCEEeccCccCCCCCCh----
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG-SIP--SEITALSMLQTLELPSSRLTGIIPS---- 151 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~p--~~~~~l~~L~~L~l~~n~l~~~~p~---- 151 (242)
..+++.|+++++ .+.+.. +..+..+++|++|++++|++... .++ ..+..+++|++|++++|+++ .++.
T Consensus 144 ~~~L~~L~Ls~n---~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQA---HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECC---SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred ccCCCEEEeeCC---Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence 457889999888 775554 77889999999999997765321 122 22467899999999999997 3343
Q ss_pred hccCCcCCcEEEcccCcCCCCCCcCcCCC---CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCC
Q 026163 152 EMGRLRNLVRLDLSDNYIGGYIPPTLGRL---SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHL 228 (242)
Q Consensus 152 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 228 (242)
.+..+++|++|++++|++++..|+.+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l 293 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL 293 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence 35788999999999999998878877776 69999999999999 6777764 7999999999999963 43 6788
Q ss_pred cCCCEEeCcCCCCC
Q 026163 229 TQLTTLAMSNKVAI 242 (242)
Q Consensus 229 ~~L~~L~ls~N~lt 242 (242)
++|++|++++|+|+
T Consensus 294 ~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 294 PEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCEECSSTTTS
T ss_pred CCccEEECcCCCCC
Confidence 99999999999985
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=6.4e-19 Score=148.25 Aligned_cols=157 Identities=24% Similarity=0.273 Sum_probs=114.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc----------------------hhhhcCCCCC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP----------------------SEITALSMLQ 136 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p----------------------~~~~~l~~L~ 136 (242)
..+++.|+++++ .+.+.. +..+..+++|++|++++|.+. .+| ..+..+++|+
T Consensus 77 l~~L~~L~L~~n---~l~~~~-~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 77 LQHLYALVLVNN---KISKIH-EKAFSPLRKLQKLYISKNHLV--EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp CTTCCEEECCSS---CCCEEC-GGGSTTCTTCCEEECCSSCCC--SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCCcEEECCCC---ccCccC-HhHhhCcCCCCEEECCCCcCC--ccCccccccCCEEECCCCccCccCHhHhCCCccCC
Confidence 456777888776 665544 566777777777777755441 233 2355566666
Q ss_pred EEeccCccCCC--CCChhccCC--------------------cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163 137 TLELPSSRLTG--IIPSEMGRL--------------------RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194 (242)
Q Consensus 137 ~L~l~~n~l~~--~~p~~~~~l--------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 194 (242)
+|++++|.++. ..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 66666666642 333333322 34555666666666555677889999999999999999
Q ss_pred cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 195 GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 195 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 877778999999999999999998 78888999999999999999885
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=7.8e-19 Score=157.73 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=131.8
Q ss_pred CCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc--cCchhhhcCCCCCEEeccCccCCCCCCh-hc
Q 026163 77 NSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG--SIPSEITALSMLQTLELPSSRLTGIIPS-EM 153 (242)
Q Consensus 77 ~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~ 153 (242)
....+++.|+++++ .+.+.+ +..+..+++|++|++++|++ ++ .+|..+..+++|++|++++|++++.+|. .+
T Consensus 350 ~~l~~L~~L~l~~n---~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQN---VFTDSV-FQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSS---CCCTTT-TTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCC---ccccch-hhhhcccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 34567899999988 777766 77889999999999997665 32 2345688999999999999999975665 47
Q ss_pred cCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCC
Q 026163 154 GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLT 232 (242)
Q Consensus 154 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~ 232 (242)
..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 8899999999999999877776654 78999999999999 67877789999999999999999 56655 88999999
Q ss_pred EEeCcCCCCC
Q 026163 233 TLAMSNKVAI 242 (242)
Q Consensus 233 ~L~ls~N~lt 242 (242)
+|++++|+++
T Consensus 501 ~L~l~~N~~~ 510 (562)
T 3a79_B 501 YIWLHDNPWD 510 (562)
T ss_dssp CEECCSCCBC
T ss_pred EEEecCCCcC
Confidence 9999999874
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.6e-18 Score=147.77 Aligned_cols=163 Identities=21% Similarity=0.170 Sum_probs=130.2
Q ss_pred CCCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhh-cCCCCCEEeccCccC
Q 026163 67 DHCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELPSSRL 145 (242)
Q Consensus 67 ~~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~n~l 145 (242)
..|- ..-.|.. +.++++++ ++.. + |..+ .+.+++|++++|++ ++..+..+. .+++|++|++++|++
T Consensus 10 ~~Cp-~~C~C~~----~~l~c~~~---~l~~-i-P~~~--~~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i 76 (361)
T 2xot_A 10 VSCP-ANCLCAS----NILSCSKQ---QLPN-V-PQSL--PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL 76 (361)
T ss_dssp TTCC-TTCEEET----TEEECCSS---CCSS-C-CSSC--CTTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCC
T ss_pred CCCC-CCCEECC----CEEEeCCC---CcCc-c-CccC--CCCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcC
Confidence 3453 3455642 35777776 5443 4 3333 34689999997665 444445566 899999999999999
Q ss_pred CCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccc
Q 026163 146 TGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTL 225 (242)
Q Consensus 146 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 225 (242)
++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+..+
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 98877889999999999999999997777789999999999999999998888899999999999999999996444445
Q ss_pred ---cCCcCCCEEeCcCCCCC
Q 026163 226 ---GHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 226 ---~~l~~L~~L~ls~N~lt 242 (242)
..+++|+.|++++|+|+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp C----CTTCCEEECCSSCCC
T ss_pred cCcccCCcCCEEECCCCCCC
Confidence 57999999999999885
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=149.45 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=106.4
Q ss_pred CeEEEEecccCCCCceeeeCCCCc--CCCCCCCEEEecCCCcccccCc----hhhhcCCCCCEEeccCccCCCCCChhcc
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNF--SCFPNLKSFKIHSNYLLSGSIP----SEITALSMLQTLELPSSRLTGIIPSEMG 154 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~--~~l~~L~~L~l~~~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 154 (242)
+++.|+++++ .+.+.. +..+ ..+++|++|++++|.+ .+..+ ..+..+++|++|++++|++++..+..+.
T Consensus 92 ~L~~L~l~~n---~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDL---KITGTM-PPLPLEATGLALSSLRLRNVSW-ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESC---CCBSCC-CCCSSSCCCBCCSSCEEESCCC-SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCC---Eeccch-hhhhhhccCCCCCEEEeecccc-cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 4888999888 877777 5555 8889999999996655 33333 2345788999999999999877778888
Q ss_pred CCcCCcEEEcccCcCCCC--C--CcCcCCCCCCCEEEeecCCCcccccc----ccCCCCCCcEEEcccCCCCCCCccccc
Q 026163 155 RLRNLVRLDLSDNYIGGY--I--PPTLGRLSKLKILNLSSNFLVGNIPL----TLCHLSKLKILNLSSNSLVGNIPPTLG 226 (242)
Q Consensus 155 ~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~l~ 226 (242)
.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .++.+++|++|++++|.+++..|+.+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 899999999999987531 1 2223566667777777776652 222 134556666666666666655555555
Q ss_pred CC---cCCCEEeCcCCCCC
Q 026163 227 HL---TQLTTLAMSNKVAI 242 (242)
Q Consensus 227 ~l---~~L~~L~ls~N~lt 242 (242)
.+ ++|++|++++|+|+
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC
T ss_pred hccCcCcCCEEECCCCCCC
Confidence 44 46666666666653
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=8.6e-19 Score=136.93 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=117.1
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
...+++|++|++++|.+ ..+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 35678999999997766 3566 5899999999999999876 33578999999999999999998788899999999
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCC-CCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++|++++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 999999999998888899999999999999998 65 565 6899999999999999875
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.3e-18 Score=142.58 Aligned_cols=146 Identities=25% Similarity=0.338 Sum_probs=118.1
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. + +..+++|++|++++|.+ ..+| .+..+++|++|++++|++++. ..+..+++
T Consensus 67 l~~L~~L~L~~n---~l~~~~-~--l~~l~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~ 135 (291)
T 1h6t_A 67 LPNVTKLFLNGN---KLTDIK-P--LANLKNLGWLFLDENKV--KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ 135 (291)
T ss_dssp CTTCCEEECCSS---CCCCCG-G--GTTCTTCCEEECCSSCC--CCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTT
T ss_pred CCCCCEEEccCC---ccCCCc-c--cccCCCCCEEECCCCcC--CCCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCC
Confidence 467888999887 666533 2 88899999999997665 2344 488899999999999998853 46788899
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcC
Confidence 99999999999854 578889999999999999986544 8889999999999999985 44 488899999999999
Q ss_pred CCC
Q 026163 239 KVA 241 (242)
Q Consensus 239 N~l 241 (242)
|++
T Consensus 210 n~i 212 (291)
T 1h6t_A 210 QEC 212 (291)
T ss_dssp EEE
T ss_pred Ccc
Confidence 875
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.78 E-value=3.2e-18 Score=131.35 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=95.5
Q ss_pred CCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKIL 186 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 186 (242)
.++|++|++++|++ .+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 36899999997664 44444457889999999999999997666678899999999999999997777778899999999
Q ss_pred EeecCCCccccccccCCCCCCcEEEcccCCCCCCCc
Q 026163 187 NLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIP 222 (242)
Q Consensus 187 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 222 (242)
++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999996656567889999999999999987554
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.5e-18 Score=143.50 Aligned_cols=146 Identities=24% Similarity=0.345 Sum_probs=81.4
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. + +..+++|++|++++|.+ ..++ .+..+++|++|++++|++++ ++. +..+++
T Consensus 62 l~~L~~L~L~~n---~i~~~~-~--~~~l~~L~~L~L~~n~l--~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 130 (308)
T 1h6u_A 62 LNNLIGLELKDN---QITDLA-P--LKNLTKITELELSGNPL--KNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSN 130 (308)
T ss_dssp CTTCCEEECCSS---CCCCCG-G--GTTCCSCCEEECCSCCC--SCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTT
T ss_pred cCCCCEEEccCC---cCCCCh-h--HccCCCCCEEEccCCcC--CCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCC
Confidence 345666666665 444322 1 66666666666665543 2233 35666666666666666663 222 556666
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++..+ +..+++|++|++++|++++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 131 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 6666666666653322 55566666666666666532 22 5555666666666666553222 55555566666655
Q ss_pred CCC
Q 026163 239 KVA 241 (242)
Q Consensus 239 N~l 241 (242)
|++
T Consensus 205 N~l 207 (308)
T 1h6u_A 205 NQI 207 (308)
T ss_dssp SCC
T ss_pred Ccc
Confidence 554
No 81
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.1e-18 Score=137.00 Aligned_cols=143 Identities=24% Similarity=0.224 Sum_probs=123.4
Q ss_pred cceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCC
Q 026163 72 TGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIP 150 (242)
Q Consensus 72 ~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p 150 (242)
..+.-....+++.|+++++ .+.+.. +..+..+++|++|++++|++ +.+| ..|..+++|++|++++|++++..+
T Consensus 32 ~~ip~~~~~~L~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 32 ASVPAGIPTNAQILYLHDN---QITKLE-PGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp SSCCSCCCTTCSEEECCSS---CCCCCC-TTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCCCCCCCCCEEEcCCC---ccCccC-HHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 3333344578999999998 877765 78899999999999997766 4455 457899999999999999997777
Q ss_pred hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCC
Q 026163 151 SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNI 221 (242)
Q Consensus 151 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 221 (242)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77899999999999999999 88999999999999999999999776677999999999999999998654
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=154.96 Aligned_cols=134 Identities=25% Similarity=0.306 Sum_probs=111.5
Q ss_pred CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC--CCChhccCCcCCcEEEcccCcCCCCCCcC-cCCCC
Q 026163 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG--IIPSEMGRLRNLVRLDLSDNYIGGYIPPT-LGRLS 181 (242)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~ 181 (242)
..+++|++|++++|+ +++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 677888889998554 455677778888999999999999886 45667888999999999999998756654 78888
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 999999999999877776654 78999999999998 78887889999999999999875
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=4.5e-18 Score=141.88 Aligned_cols=147 Identities=23% Similarity=0.407 Sum_probs=125.2
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|++.++ .+.. + +.+..+++|++|++++|.+ ..++. +..+++|++|++++|++++ ++ .+..+++
T Consensus 40 l~~L~~L~l~~~---~i~~-l--~~~~~l~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT---GVTT-I--EGVQYLNNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred cCCcCEEEeeCC---CccC-c--hhhhccCCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 457899999887 5554 3 3688999999999997766 34555 8999999999999999985 44 6899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++ ++. +..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCC
Confidence 9999999999985 443 8999999999999999996433 8899999999999999985 444 89999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+++
T Consensus 183 n~l~ 186 (308)
T 1h6u_A 183 NKIS 186 (308)
T ss_dssp SCCC
T ss_pred CccC
Confidence 9875
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.8e-18 Score=143.23 Aligned_cols=147 Identities=26% Similarity=0.338 Sum_probs=123.9
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|++.++ .+.. + +.+..+++|++|++++|++ ..++. +..+++|++|++++|++++ + ..+..+++
T Consensus 45 l~~L~~L~l~~~---~i~~-~--~~~~~l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNS---DIKS-V--QGIQYLPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHTCCEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred cCcccEEEccCC---Cccc-C--hhHhcCCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 456889999887 5543 2 4588899999999997765 34555 8899999999999999985 3 34899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++. +.+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 99999999999853 5688999999999999999964 578899999999999999986544 89999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+|+
T Consensus 188 N~i~ 191 (291)
T 1h6t_A 188 NHIS 191 (291)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 9875
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=162.83 Aligned_cols=160 Identities=25% Similarity=0.281 Sum_probs=141.1
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChh--ccC
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE--MGR 155 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~ 155 (242)
...+++.|+++++ ...+.+++..|..+++|++|++++|++ .+..|..|.++++|++|++++|.+++.+|.. +.+
T Consensus 46 ~l~~L~~LdLs~n---~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 46 FLEQLQLLELGSQ---YTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCCSCSEEEECTT---CCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred ccccCeEEeCCCC---CCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4567999999998 788888788999999999999996654 5566888999999999999999999877665 899
Q ss_pred CcCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCC--CCCcEEEcccCCCCCCCcccccCCcC--
Q 026163 156 LRNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHL--SKLKILNLSSNSLVGNIPPTLGHLTQ-- 230 (242)
Q Consensus 156 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~p~~l~~l~~-- 230 (242)
+++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..++.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 9999999999999987655 579999999999999999998888888877 89999999999999888877776665
Q ss_pred ----CCEEeCcCCCC
Q 026163 231 ----LTTLAMSNKVA 241 (242)
Q Consensus 231 ----L~~L~ls~N~l 241 (242)
|++|++++|.+
T Consensus 202 ~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 202 RNMVLEILDVSGNGW 216 (844)
T ss_dssp TTCCBSEEBCSSCCS
T ss_pred ccCceeEEecCCCcC
Confidence 99999999965
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=154.50 Aligned_cols=134 Identities=26% Similarity=0.338 Sum_probs=114.5
Q ss_pred CCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCC--CChhccCCcCCcEEEcccCcCCCCCCc-CcCCCC
Q 026163 105 SCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGI--IPSEMGRLRNLVRLDLSDNYIGGYIPP-TLGRLS 181 (242)
Q Consensus 105 ~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 181 (242)
..+++|++|++++|. +++.+|..+.++++|++|++++|++++. +|..+.++++|++|++++|++++.+|. .+..++
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 678899999999655 4556788889999999999999999863 346688999999999999999875665 488899
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 999999999999887776654 78999999999998 68877889999999999999985
No 87
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.8e-18 Score=133.61 Aligned_cols=108 Identities=29% Similarity=0.375 Sum_probs=57.5
Q ss_pred CCCEEeccCccCCCCCCh-hccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEc
Q 026163 134 MLQTLELPSSRLTGIIPS-EMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL 212 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 212 (242)
++++|++++|++++..+. .+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555533332 2455555555555555555544555555555555555555555444444555555555555
Q ss_pred ccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 213 SSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 213 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++|++++..|..+..+++|++|++++|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 55555555555555555555555555544
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=1.3e-18 Score=155.42 Aligned_cols=159 Identities=17% Similarity=0.114 Sum_probs=130.8
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC-CCChhccCC
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG-IIPSEMGRL 156 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l 156 (242)
...+++.|+++++ .+.+.. +..|..+++|++|++++|.+ .+..|..+.++++|++|++++|++++ ..|..+.++
T Consensus 48 ~l~~L~~L~Ls~n---~i~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 48 ACANLQVLILKSS---RINTIE-GDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SCTTCCEEECTTS---CCCEEC-TTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred cCCcccEEECCCC---CcCccC-hhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 3568999999998 777655 78899999999999996654 45555669999999999999999986 356789999
Q ss_pred cCCcEEEcccCcCCCCCC-cCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccc-ccCCcCCCEE
Q 026163 157 RNLVRLDLSDNYIGGYIP-PTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPT-LGHLTQLTTL 234 (242)
Q Consensus 157 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L 234 (242)
++|++|++++|++.+.+| ..+.++++|++|++++|++++..|..++.+++|++|++++|.+. .+|.. +..+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEE
Confidence 999999999999544554 67999999999999999999988999988888888888888876 34433 3567788888
Q ss_pred eCcCCCCC
Q 026163 235 AMSNKVAI 242 (242)
Q Consensus 235 ~ls~N~lt 242 (242)
++++|+++
T Consensus 202 ~L~~n~l~ 209 (549)
T 2z81_A 202 ELRDTNLA 209 (549)
T ss_dssp EEESCBCT
T ss_pred EccCCccc
Confidence 88887763
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=3.9e-18 Score=143.99 Aligned_cols=130 Identities=27% Similarity=0.361 Sum_probs=92.5
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|++|++++|.+ ..++. +..+++|++|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKI--TDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhcCCcCCEEEccCCcc--CCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 55667777777775554 23343 66777777777777777642 4567777888888888877743 356777888
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++|++++|++++..|..+..+++|++|++++|++++..| +..+++|++|++++|+|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888877777777888888888888888876544 777888888888888774
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4.4e-18 Score=138.90 Aligned_cols=145 Identities=24% Similarity=0.331 Sum_probs=121.9
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ ++.. + +.+..+++|++|++++|++ ..++. +..+++|++|++++|++++ +|.. .. ++
T Consensus 40 l~~L~~L~l~~n---~i~~-l--~~l~~l~~L~~L~L~~N~i--~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~ 107 (263)
T 1xeu_A 40 LSGVQNFNGDNS---NIQS-L--AGMQFFTNLKELHLSHNQI--SDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-AC 107 (263)
T ss_dssp HTTCSEEECTTS---CCCC-C--TTGGGCTTCCEEECCSSCC--CCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SS
T ss_pred cCcCcEEECcCC---Cccc-c--hHHhhCCCCCEEECCCCcc--CCChh-hccCCCCCEEECCCCccCC-cCcc-cc-Cc
Confidence 467889999987 6553 4 3788999999999997765 34555 8999999999999999985 4443 33 89
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++ + +.+..+++|++|++++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 9999999999985 3 3689999999999999999964 4 688999999999999999865 6788999999999999
Q ss_pred CCC
Q 026163 239 KVA 241 (242)
Q Consensus 239 N~l 241 (242)
|++
T Consensus 182 N~~ 184 (263)
T 1xeu_A 182 QKC 184 (263)
T ss_dssp EEE
T ss_pred Ccc
Confidence 976
No 91
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.2e-18 Score=161.00 Aligned_cols=110 Identities=25% Similarity=0.354 Sum_probs=52.4
Q ss_pred hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+.++++|++|+|++|.|+ .+|..++.+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3444445555555555544 34444444455555555555554 44444444555555555555544 344444445555
Q ss_pred cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++|+|++|.++ .+|..++.+++|++|+|++|+|
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 55555555444 3444444555555555555544
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=5.8e-18 Score=152.02 Aligned_cols=149 Identities=23% Similarity=0.324 Sum_probs=106.9
Q ss_pred CCCCC-----cccce-EeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEE
Q 026163 65 TSDHC-----KWTGI-RCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTL 138 (242)
Q Consensus 65 ~~~~C-----~w~gv-~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 138 (242)
+.++| .|.|+ .|. .++++.|+++++ ++.+ + +..+ +++|++|++++|++ ..+| ..+++|++|
T Consensus 39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n---~L~~-l-p~~l--~~~L~~L~Ls~N~l--~~ip---~~l~~L~~L 105 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECL-INQFSELQLNRL---NLSS-L-PDNL--PPQITVLEITQNAL--ISLP---ELPASLEYL 105 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSS---CCSC-C-CSCC--CTTCSEEECCSSCC--SCCC---CCCTTCCEE
T ss_pred cCCccccccchhhhccccc-cCCccEEEeCCC---CCCc-c-CHhH--cCCCCEEECcCCCC--cccc---cccCCCCEE
Confidence 45667 69999 675 357999999988 7665 5 3333 37889999987665 3567 457888888
Q ss_pred eccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 139 ELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 139 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
++++|++++ +|. +.+ +|++|++++|++++ +|. .+++|++|++++|++++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 888888885 666 554 78888888888875 555 56777888888887774 554 4567777777777777
Q ss_pred CCCcccccCCcCCCEEeCcCCCCC
Q 026163 219 GNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 219 ~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+ +|. +. ++|++|++++|+|+
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS
T ss_pred C-cch-hh--CCCCEEECcCCCCC
Confidence 5 555 44 67777777777664
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.8e-18 Score=129.76 Aligned_cols=137 Identities=23% Similarity=0.214 Sum_probs=117.1
Q ss_pred CCCeEEEEecccCCCCce-eeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCc
Q 026163 79 AGSVIRVSLLWYENDNMK-GELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLR 157 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~-~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 157 (242)
..+++.|+++++ .+. +.+ +..+..+++|++|++++|.+ ++ + ..+..+++|++|++++|++++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n---~l~~~~i-~~~~~~l~~L~~L~l~~n~l-~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNC---KSNDGKI-EGLTAEFVNLEFLSLINVGL-IS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSC---BCBTTBC-SSCCGGGGGCCEEEEESSCC-CC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCC---CCChhhH-HHHHHhCCCCCEEeCcCCCC-CC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 367999999998 777 677 66789999999999997765 33 3 5688999999999999999987888888899
Q ss_pred CCcEEEcccCcCCCCC-CcCcCCCCCCCEEEeecCCCccccc---cccCCCCCCcEEEcccCCCCCCCcc
Q 026163 158 NLVRLDLSDNYIGGYI-PPTLGRLSKLKILNLSSNFLVGNIP---LTLCHLSKLKILNLSSNSLVGNIPP 223 (242)
Q Consensus 158 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~ 223 (242)
+|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|+
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999999998542 2789999999999999999996544 47899999999999999987 4554
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.8e-18 Score=142.77 Aligned_cols=132 Identities=21% Similarity=0.158 Sum_probs=108.4
Q ss_pred CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 026163 106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK 184 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 184 (242)
.+++|++|++++|++ ++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+
T Consensus 118 ~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~ 194 (317)
T 3o53_A 118 RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLK 194 (317)
T ss_dssp CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCC
Confidence 367888999986654 44445568889999999999999997766666 4789999999999999844 3 334589999
Q ss_pred EEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 185 ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 185 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|++++|++++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 99999999995 4556889999999999999998 57888899999999999999874
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-18 Score=153.62 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=100.3
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+.. + +..+++|++|++++|.+ + .+| ..++|++|++++|.+++..+ ..+++|
T Consensus 58 ~~L~~L~Ls~N---~l~~~~-~--l~~l~~L~~L~Ls~N~l-~-~l~----~~~~L~~L~L~~N~l~~~~~---~~l~~L 122 (487)
T 3oja_A 58 TKLELLNLSSN---VLYETL-D--LESLSTLRTLDLNNNYV-Q-ELL----VGPSIETLHAANNNISRVSC---SRGQGK 122 (487)
T ss_dssp TTCCEEECTTS---CCEEEE-E--CTTCTTCCEEECCSSEE-E-EEE----ECTTCCEEECCSSCCCCEEE---CCCSSC
T ss_pred CCCCEEEeeCC---CCCCCc-c--cccCCCCCEEEecCCcC-C-CCC----CCCCcCEEECcCCcCCCCCc---cccCCC
Confidence 45555555555 555443 1 55555666666654433 1 122 22556666666666664433 245778
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccC-CCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLC-HLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|++++
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS 200 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCC
Confidence 8888888888877787888888899999999998887777765 688899999999988854 32 44688899999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|.|+
T Consensus 201 N~l~ 204 (487)
T 3oja_A 201 NKLA 204 (487)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8875
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.2e-18 Score=149.60 Aligned_cols=132 Identities=21% Similarity=0.143 Sum_probs=108.7
Q ss_pred CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhcc-CCcCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 026163 106 CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMG-RLRNLVRLDLSDNYIGGYIPPTLGRLSKLK 184 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 184 (242)
.+++|++|++++|. +++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. | ....+++|+
T Consensus 118 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 194 (487)
T 3oja_A 118 RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLK 194 (487)
T ss_dssp CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCC
T ss_pred ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCC
Confidence 46788889998555 4455566788899999999999999987787775 789999999999999855 3 344688999
Q ss_pred EEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 185 ILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 185 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 195 ~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred EEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 999999999964 4458889999999999999985 7777889999999999999874
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.5e-17 Score=126.33 Aligned_cols=109 Identities=28% Similarity=0.300 Sum_probs=68.1
Q ss_pred CCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEc
Q 026163 133 SMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNL 212 (242)
Q Consensus 133 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 212 (242)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45666666666666544455566666666666666666444445566666666666666666554445566666666666
Q ss_pred ccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 213 SSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 213 ~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++|.+++..+..+..+++|++|++++|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66666644444455666666666666665
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.6e-17 Score=150.34 Aligned_cols=146 Identities=25% Similarity=0.341 Sum_probs=123.4
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|+++++ .+.+.. + +..+++|++|++++|.+ ..+| .+..+++|++|++++|++++ + ..+..+++
T Consensus 64 l~~L~~L~Ls~N---~l~~~~-~--l~~l~~L~~L~Ls~N~l--~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGN---KLTDIK-P--LTNLKNLGWLFLDENKI--KDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTS---CCCCCG-G--GGGCTTCCEEECCSSCC--CCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred CCCCCEEEeeCC---CCCCCh-h--hccCCCCCEEECcCCCC--CCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCc
Confidence 567899999988 766643 2 88999999999997765 2344 58889999999999999985 3 45888999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++ + +.+..+++|+.|+|++
T Consensus 133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFS 206 (605)
T ss_dssp CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCS
T ss_pred cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccC
Confidence 99999999999854 678899999999999999997655 8899999999999999985 3 4588999999999999
Q ss_pred CCC
Q 026163 239 KVA 241 (242)
Q Consensus 239 N~l 241 (242)
|++
T Consensus 207 N~l 209 (605)
T 1m9s_A 207 QEC 209 (605)
T ss_dssp EEE
T ss_pred CcC
Confidence 976
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.1e-17 Score=149.65 Aligned_cols=147 Identities=27% Similarity=0.357 Sum_probs=125.5
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRN 158 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 158 (242)
..+++.|++.++ .+.. + +.+..+++|++|+|++|.+ . .++. +..+++|++|+|++|.+++ +| .+..+++
T Consensus 42 L~~L~~L~l~~n---~i~~-l--~~l~~l~~L~~L~Ls~N~l-~-~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNS---DIKS-V--QGIQYLPNVTKLFLNGNKL-T-DIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTC---CCCC-C--TTGGGCTTCCEEECTTSCC-C-CCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTT
T ss_pred CCCCCEEECcCC---CCCC-C--hHHccCCCCCEEEeeCCCC-C-CChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCC
Confidence 456788888877 5543 3 4688999999999997765 3 3554 8999999999999999985 44 6899999
Q ss_pred CcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 159 LVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 159 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
|++|++++|++++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++
T Consensus 111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence 9999999999985 3 4688999999999999999964 578999999999999999997655 89999999999999
Q ss_pred CCCC
Q 026163 239 KVAI 242 (242)
Q Consensus 239 N~lt 242 (242)
|+|+
T Consensus 185 N~i~ 188 (605)
T 1m9s_A 185 NHIS 188 (605)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9875
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=127.26 Aligned_cols=125 Identities=25% Similarity=0.330 Sum_probs=102.3
Q ss_pred EEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecC
Q 026163 112 SFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSN 191 (242)
Q Consensus 112 ~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 191 (242)
+++++++++ ..+|..+ .++|++|++++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l--~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGL--KVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCC--SSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCC--CcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 445554443 3455433 257899999999998 67788899999999999999999777788999999999999999
Q ss_pred CCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 192 FLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 192 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99987777889999999999999999866556788899999999999976
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.73 E-value=3.4e-18 Score=131.13 Aligned_cols=134 Identities=17% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
..+..+++|++|++++|++ ..+|......++|++|++++|++++. ..+..+++|++|++++|++++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l--~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCC--chhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3456678899999997765 24555333344999999999999864 5788899999999999999854444458899
Q ss_pred CCCEEEeecCCCcccccc--ccCCCCCCcEEEcccCCCCCCCccc----ccCCcCCCEEeCcCCCC
Q 026163 182 KLKILNLSSNFLVGNIPL--TLCHLSKLKILNLSSNSLVGNIPPT----LGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~N~l 241 (242)
+|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +..+++|+.||+++|.+
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999997 4565 7888999999999999998 45653 88899999999988864
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4e-17 Score=137.82 Aligned_cols=130 Identities=28% Similarity=0.411 Sum_probs=101.0
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|+++++++|.+ . .++. +..+++|++|++++|++++. +. +..+++|++|++++|.+++. +.+..+++|
T Consensus 195 ~~~l~~L~~L~l~~n~l-~-~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQI-T-DITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp GGGCTTCCEEECCSSCC-C-CCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred ccCCCccceeecccCCC-C-CCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 55566666666664443 1 2222 67788888888888888744 33 78888899999988888743 467888899
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 9999999988853 35788899999999999998888888899999999999999875
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2e-18 Score=144.45 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=130.4
Q ss_pred CcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhh-hcCCCCCEEeccCccCCC
Q 026163 69 CKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEI-TALSMLQTLELPSSRLTG 147 (242)
Q Consensus 69 C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~~ 147 (242)
|...++.+....+++.|+++++ .+.+.. +..+..+++|++|++++|.+ .+..+..+ ..+++|++|++++|++++
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N---~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANN---KITMLR-DLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSS---CCCSGG-GBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CccCCcCccccCCCCEEECCCC---CCCCcc-chhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCCcCcc
Confidence 3444555555567888888877 666544 66788899999999997655 44445555 478999999999999985
Q ss_pred CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC-CCCccccc
Q 026163 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV-GNIPPTLG 226 (242)
Q Consensus 148 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~ 226 (242)
. +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 4 33 3458999999999999994 5566999999999999999999 57888999999999999999998 67788888
Q ss_pred CCcCCCEEeCcC
Q 026163 227 HLTQLTTLAMSN 238 (242)
Q Consensus 227 ~l~~L~~L~ls~ 238 (242)
.+++|+.+++++
T Consensus 260 ~~~~L~~l~l~~ 271 (317)
T 3o53_A 260 KNQRVQTVAKQT 271 (317)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccccceEEECCC
Confidence 999998888763
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=4e-17 Score=143.42 Aligned_cols=127 Identities=29% Similarity=0.445 Sum_probs=74.2
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|++|++++|.+ . .++. +..+++|++|++++|++++..+ +..+++|++|++++|++++..| +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l-~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQI-S-NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCC-C-CCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCcc-C-cccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 45555555555554433 1 2232 5555666666666666654322 5556666666666666654433 5566666
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++|++++|++++. ..+..+++|++|++++|++++..| +..+++|++|++++|++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 6666666666643 356666677777777777765554 66667777777776654
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2e-18 Score=159.54 Aligned_cols=121 Identities=25% Similarity=0.322 Sum_probs=107.1
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 180 (242)
+..+..++.|++|+|++|.+ ..+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..+..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l--~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQI--FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCC--SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCC--CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 56688899999999997776 368888889999999999999999 88999999999999999999999 889999999
Q ss_pred CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCccccc
Q 026163 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLG 226 (242)
Q Consensus 181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 226 (242)
++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999999998 7888899999999999999999987776653
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=6.7e-17 Score=137.05 Aligned_cols=167 Identities=23% Similarity=0.230 Sum_probs=122.4
Q ss_pred CcccceEeCC----------CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCE
Q 026163 69 CKWTGIRCNS----------AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQT 137 (242)
Q Consensus 69 C~w~gv~c~~----------~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~ 137 (242)
|.+..|.|+. ..++++|+++++ .+. .+++..|.++++|++|++++|++.+ .+| ..|.+++++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N---~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT---KLR-VIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC---CCS-EECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC---cCC-CcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhh
Confidence 6788888942 246899999997 766 5656789999999999999776543 444 35778888765
Q ss_pred -EeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc-------------------------CCC-CCCCEEEeec
Q 026163 138 -LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-------------------------GRL-SKLKILNLSS 190 (242)
Q Consensus 138 -L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-------------------------~~l-~~L~~L~L~~ 190 (242)
+.+..|+++...|..|..+++|++|++++|+++...+..+ ..+ ..++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 5666788887778888899999999999998874433222 222 2467778888
Q ss_pred CCCccccccccCCCCCCcEEEccc-CCCCCCCc-ccccCCcCCCEEeCcCCCCC
Q 026163 191 NFLVGNIPLTLCHLSKLKILNLSS-NSLVGNIP-PTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 191 N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p-~~l~~l~~L~~L~ls~N~lt 242 (242)
|+++. +|.......+|+.+++.+ |.++ .+| ..+..+++|++|++++|+|+
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 88874 444444556788888875 5555 455 56789999999999999875
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=7.2e-17 Score=131.67 Aligned_cols=128 Identities=21% Similarity=0.320 Sum_probs=110.0
Q ss_pred CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
.+..+++|++|++++|++ ..+| .+..+++|++|++++|++++. +. +..+++|++|++++|++++ +|... . ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SS
T ss_pred chhhcCcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-Cc
Confidence 567889999999997766 3566 688999999999999999954 44 8999999999999999985 44433 3 89
Q ss_pred CCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 183 LKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 183 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|++|++++|+|+
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999999999996 44 689999999999999999864 4 6889999999999999885
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=1.5e-16 Score=139.79 Aligned_cols=128 Identities=24% Similarity=0.416 Sum_probs=73.2
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|++|++++|.+ . .++. +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l-~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQI-S-NLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCC-C-CCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCcc-c-cchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 44455555555554433 1 1222 4555556666666665553322 5556666666666666653322 5566666
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 666666666665443 55666677777777766643 34667777777777777653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2e-16 Score=142.14 Aligned_cols=116 Identities=22% Similarity=0.362 Sum_probs=78.3
Q ss_pred CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 188 (242)
+|++|++++|++ + .+|. .+++|++|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|++|++
T Consensus 121 ~L~~L~Ls~N~l-~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 121 SLKHLDVDNNQL-T-MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp TCCEEECCSSCC-S-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred CCCEEECCCCcC-C-CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 555555554433 2 2444 45666666666666664 444 45677777777777774 555 54 77888888
Q ss_pred ecCCCccccccccCCCCCC-------cEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 189 SSNFLVGNIPLTLCHLSKL-------KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 189 ~~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++|+|+ .+|. +.. +| +.|++++|.|+ .+|..+..+++|+.|++++|+|+
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 888887 5665 544 66 88888888888 57877778899999999999875
No 110
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.5e-16 Score=121.44 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=87.1
Q ss_pred CCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEee
Q 026163 110 LKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189 (242)
Q Consensus 110 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 189 (242)
.++++++++.+ ..+|..+ .++|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l--~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCc--CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46788886655 3567654 3788999999999987778888889999999999999986666677888999999999
Q ss_pred cCCCccccccccCCCCCCcEEEcccCCCCCC
Q 026163 190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVGN 220 (242)
Q Consensus 190 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 220 (242)
+|++++..+..|..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999876666688889999999999988754
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=2.2e-18 Score=144.80 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=68.9
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCc-cCCCC-CChhccCCcCCcEEEcccC-cCCCC-CCcCcCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSS-RLTGI-IPSEMGRLRNLVRLDLSDN-YIGGY-IPPTLGR 179 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~ 179 (242)
+..+++|++|++++|. +++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 3444444444444332 22233444444555555555554 34321 3333444555555555555 44422 2333445
Q ss_pred CC-CCCEEEeecC--CCc-cccccccCCCCCCcEEEcccCC-CCCCCcccccCCcCCCEEeCcCC
Q 026163 180 LS-KLKILNLSSN--FLV-GNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 180 l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55 5666666655 333 2344445556666666666666 55555556666677777777666
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.5e-17 Score=121.91 Aligned_cols=109 Identities=27% Similarity=0.264 Sum_probs=99.2
Q ss_pred CCCCCEEeccCccCC-CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEE
Q 026163 132 LSMLQTLELPSSRLT-GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKIL 210 (242)
Q Consensus 132 l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 210 (242)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 78888889999999999999999865 789999999999999999998788888889999999
Q ss_pred EcccCCCCCC-CcccccCCcCCCEEeCcCCCCC
Q 026163 211 NLSSNSLVGN-IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 211 ~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++++|.+++. .+..+..+++|++|++++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 9999999863 3478999999999999999874
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=6.2e-16 Score=135.74 Aligned_cols=143 Identities=23% Similarity=0.230 Sum_probs=77.2
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCC-------
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIP------- 150 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p------- 150 (242)
...+++.|+++++ .+.+ + .+..+++|++|++++|++ + .+| +..+++|++|++++|++++. +
T Consensus 83 ~l~~L~~L~Ls~N---~l~~-~---~~~~l~~L~~L~L~~N~l-~-~l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L 150 (457)
T 3bz5_A 83 QNTNLTYLACDSN---KLTN-L---DVTPLTKLTYLNCDTNKL-T-KLD--VSQNPLLTYLNCARNTLTEI-DVSHNTQL 150 (457)
T ss_dssp TCTTCSEEECCSS---CCSC-C---CCTTCTTCCEEECCSSCC-S-CCC--CTTCTTCCEEECTTSCCSCC-CCTTCTTC
T ss_pred cCCCCCEEECcCC---CCce-e---ecCCCCcCCEEECCCCcC-C-eec--CCCCCcCCEEECCCCcccee-ccccCCcC
Confidence 3455666666665 4443 1 255666666666665443 2 233 55555666666666655532 1
Q ss_pred -------------hhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCC
Q 026163 151 -------------SEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSL 217 (242)
Q Consensus 151 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 217 (242)
..+..+++|++|++++|++++ +| +..+++|++|++++|++++. .++.+++|++|++++|++
T Consensus 151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred CEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence 013344455555555555553 22 44555555555555555532 255566666666666666
Q ss_pred CCCCcccccCCcCCCEEeCcCCCC
Q 026163 218 VGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 218 ~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
++ +| +..+++|++|++++|++
T Consensus 225 ~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 225 TE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp SC-CC--CTTCTTCSEEECCSSCC
T ss_pred cc-cC--ccccCCCCEEEeeCCcC
Confidence 64 34 55666666666666655
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=4.3e-18 Score=143.05 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=128.3
Q ss_pred CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccc-cCchhhhcCCCCCEEeccCc-cCCCC-CChhcc
Q 026163 78 SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSG-SIPSEITALSMLQTLELPSS-RLTGI-IPSEMG 154 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~-~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~ 154 (242)
...+++.|+++++ .+.+.. +..+..+++|++|++++|..+++ .++..+..+++|++|++++| .+++. ++..+.
T Consensus 116 ~~~~L~~L~L~~~---~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 116 QCSKLQNLSLEGL---RLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp TBCCCSEEECTTC---BCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred hCCCCCEEeCcCc---ccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 3457888888887 666555 56778899999999998744444 36777889999999999999 88854 567788
Q ss_pred CCc-CCcEEEcccC--cCC-CCCCcCcCCCCCCCEEEeecCC-CccccccccCCCCCCcEEEcccCC-CCCCCcccccCC
Q 026163 155 RLR-NLVRLDLSDN--YIG-GYIPPTLGRLSKLKILNLSSNF-LVGNIPLTLCHLSKLKILNLSSNS-LVGNIPPTLGHL 228 (242)
Q Consensus 155 ~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l 228 (242)
.++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 899 9999999999 455 3556677889999999999999 777778889999999999999995 332222367889
Q ss_pred cCCCEEeCcCC
Q 026163 229 TQLTTLAMSNK 239 (242)
Q Consensus 229 ~~L~~L~ls~N 239 (242)
++|++|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 99999999988
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=4.5e-16 Score=136.63 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=77.0
Q ss_pred CCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCC
Q 026163 80 GSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNL 159 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 159 (242)
.+++.|+++++ .+.+ + .+..+++|++|++++|.+ ++ ++ +.++++|++|++++|++++ +| ++.+++|
T Consensus 64 ~~L~~L~Ls~n---~l~~-~---~~~~l~~L~~L~Ls~N~l-~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 64 TGLTKLICTSN---NITT-L---DLSQNTNLTYLACDSNKL-TN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp TTCSEEECCSS---CCSC-C---CCTTCTTCSEEECCSSCC-SC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred CCCCEEEccCC---cCCe-E---ccccCCCCCEEECcCCCC-ce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 34555555554 3333 1 144555555555554433 21 22 4555555555555555553 22 4555555
Q ss_pred cEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCC
Q 026163 160 VRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 160 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 239 (242)
++|++++|++++. .++.+++|++|++++|+..+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|
T Consensus 130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 5555555555532 2455555666666555433333 35566677777777777764 34 666777777777777
Q ss_pred CCC
Q 026163 240 VAI 242 (242)
Q Consensus 240 ~lt 242 (242)
+++
T Consensus 202 ~l~ 204 (457)
T 3bz5_A 202 NIT 204 (457)
T ss_dssp CCS
T ss_pred cCC
Confidence 653
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=3.7e-18 Score=146.46 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCeEEEEecccCCCCcee----eeCCCCcCCCCCCCEEEecCCCccccc----CchhhhcC---------CCCCEEeccC
Q 026163 80 GSVIRVSLLWYENDNMKG----ELGRFNFSCFPNLKSFKIHSNYLLSGS----IPSEITAL---------SMLQTLELPS 142 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~----~i~~~~~~~l~~L~~L~l~~~~~~~~~----~p~~~~~l---------~~L~~L~l~~ 142 (242)
.+++.|+++++ .+.+ .+ +..+..+++|++|++++|.+ +.. ++..+..+ ++|++|++++
T Consensus 94 ~~L~~L~Ls~n---~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 94 PKLHTVRLSDN---AFGPTAQEPL-IDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCCEEECCSC---CCCTTTHHHH-HHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred CcccEEECCCC---cCCHHHHHHH-HHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 45666666665 4443 23 33455566666666665443 211 12223333 6677777777
Q ss_pred ccCC-CCCC---hhccCCcCCcEEEcccCcCCC-----CCCcCcCCCCCCCEEEeecCCCc----cccccccCCCCCCcE
Q 026163 143 SRLT-GIIP---SEMGRLRNLVRLDLSDNYIGG-----YIPPTLGRLSKLKILNLSSNFLV----GNIPLTLCHLSKLKI 209 (242)
Q Consensus 143 n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~ 209 (242)
|+++ +.++ ..+..+++|++|++++|+++. ..|..+..+++|++|++++|.++ ..+|..+..+++|++
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 7665 2333 344566677777777777652 23336667777777777777775 456666777777777
Q ss_pred EEcccCCCCCC----Cccccc--CCcCCCEEeCcCCCCC
Q 026163 210 LNLSSNSLVGN----IPPTLG--HLTQLTTLAMSNKVAI 242 (242)
Q Consensus 210 L~L~~N~l~~~----~p~~l~--~l~~L~~L~ls~N~lt 242 (242)
|++++|.+++. ++..+. .+++|++|++++|.|+
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 77777777654 445553 3777788888777764
No 117
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=3.4e-16 Score=119.89 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=87.3
Q ss_pred CEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeec
Q 026163 111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSS 190 (242)
Q Consensus 111 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 190 (242)
+.++++++.+ +.+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|+|++
T Consensus 15 ~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 6788886665 56776553 7899999999999987788889999999999999999866556678899999999999
Q ss_pred CCCccccccccCCCCCCcEEEcccCCCCC
Q 026163 191 NFLVGNIPLTLCHLSKLKILNLSSNSLVG 219 (242)
Q Consensus 191 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 219 (242)
|++++..+..|..+++|++|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996555568889999999999999874
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.67 E-value=1.2e-19 Score=141.97 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=110.7
Q ss_pred CcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCC
Q 026163 103 NFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSK 182 (242)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 182 (242)
.+..+++|++|++++|.+ + .+| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l-~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-E-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-S-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCC-c-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 788899999999997665 3 377 7899999999999999998 678888888999999999999985 45 6888999
Q ss_pred CCEEEeecCCCccccc-cccCCCCCCcEEEcccCCCCCCCcc----------cccCCcCCCEEeCcCCCC
Q 026163 183 LKILNLSSNFLVGNIP-LTLCHLSKLKILNLSSNSLVGNIPP----------TLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 183 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~L~~L~ls~N~l 241 (242)
|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|. .+..+++|+.|| +|.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 9999999999985332 4788999999999999999876554 378899999997 5554
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.2e-18 Score=146.87 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=129.5
Q ss_pred CCCeEEEEecccCCCCceeeeC---CCCcCCC---------CCCCEEEecCCCcccccCc---hhhhcCCCCCEEeccCc
Q 026163 79 AGSVIRVSLLWYENDNMKGELG---RFNFSCF---------PNLKSFKIHSNYLLSGSIP---SEITALSMLQTLELPSS 143 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~---~~~~~~l---------~~L~~L~l~~~~~~~~~~p---~~~~~l~~L~~L~l~~n 143 (242)
..+++.|+++++ .+.+..+ ...+..+ ++|++|++++|++..+.++ ..+..+++|++|++++|
T Consensus 121 ~~~L~~L~L~~n---~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 121 HTPLEHLYLHNN---GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp CTTCCEEECCSS---CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCCEEECcCC---CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 468999999998 6643220 1223334 8999999998776545566 46778999999999999
Q ss_pred cCCC-----CCChhccCCcCCcEEEcccCcCC----CCCCcCcCCCCCCCEEEeecCCCccc----ccccc--CCCCCCc
Q 026163 144 RLTG-----IIPSEMGRLRNLVRLDLSDNYIG----GYIPPTLGRLSKLKILNLSSNFLVGN----IPLTL--CHLSKLK 208 (242)
Q Consensus 144 ~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~ 208 (242)
+++. ..|..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++. +|..+ +++++|+
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 9983 23447788999999999999995 46788889999999999999999875 56666 4489999
Q ss_pred EEEcccCCCCC----CCcccc-cCCcCCCEEeCcCCCCC
Q 026163 209 ILNLSSNSLVG----NIPPTL-GHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 209 ~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~N~lt 242 (242)
+|++++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99999999997 477777 66899999999999985
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.4e-16 Score=140.79 Aligned_cols=103 Identities=27% Similarity=0.348 Sum_probs=56.7
Q ss_pred CCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcc
Q 026163 134 MLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLS 213 (242)
Q Consensus 134 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 213 (242)
.|++|++++|++++ +|. ++.+++|++|++++|.++ .+|..++.+++|++|+|++|++++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35555555555553 343 555555555555555555 455555555555555555555553 34 45555555555555
Q ss_pred cCCCCCCC-cccccCCcCCCEEeCcCCCC
Q 026163 214 SNSLVGNI-PPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 214 ~N~l~~~~-p~~l~~l~~L~~L~ls~N~l 241 (242)
+|.+++.. |..++.+++|+.|++++|+|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 55555443 55555555555555555554
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.2e-15 Score=116.33 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=83.7
Q ss_pred EEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEE
Q 026163 84 RVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLD 163 (242)
Q Consensus 84 ~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 163 (242)
.++++++ .+.. + +..+ .++|++|++++|+ +++..|..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 13 ~l~~s~n---~l~~-i-p~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 13 TVDCSGK---SLAS-V-PTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp EEECTTS---CCSS-C-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEeCCC---CcCc-c-CccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4555554 4433 4 3333 3789999999655 4555577789999999999999999977777789999999999
Q ss_pred cccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163 164 LSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN 196 (242)
Q Consensus 164 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 196 (242)
+++|++++..+..+..+++|++|++++|.++..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999977667799999999999999998854
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=2.3e-17 Score=140.44 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=88.7
Q ss_pred CeEEEEecccCCCCceeeeCCCCcCCC-----CCCCEEEecCCCcccccCchh----hhcC-CCCCEEeccCccCCCCCC
Q 026163 81 SVIRVSLLWYENDNMKGELGRFNFSCF-----PNLKSFKIHSNYLLSGSIPSE----ITAL-SMLQTLELPSSRLTGIIP 150 (242)
Q Consensus 81 ~v~~L~l~~~~~~~~~~~i~~~~~~~l-----~~L~~L~l~~~~~~~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p 150 (242)
+++.|+++++ .+.+.. +..+..+ ++|++|++++|.+ ++..+.. +..+ ++|++|++++|++++..+
T Consensus 52 ~L~~L~Ls~N---~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGN---SLGFKN-SDELVQILAAIPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSS---CGGGSC-HHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCC---CCCHHH-HHHHHHHHhccCCCccEEECcCCcC-ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 5667777666 544432 2233332 6677777775543 3333332 2333 667777777777765544
Q ss_pred hhcc----C-CcCCcEEEcccCcCCCCCCc----CcCCCC-CCCEEEeecCCCccccccc----cCCC-CCCcEEEcccC
Q 026163 151 SEMG----R-LRNLVRLDLSDNYIGGYIPP----TLGRLS-KLKILNLSSNFLVGNIPLT----LCHL-SKLKILNLSSN 215 (242)
Q Consensus 151 ~~~~----~-l~~L~~L~Ls~N~l~~~~p~----~~~~l~-~L~~L~L~~N~l~~~~p~~----l~~l-~~L~~L~L~~N 215 (242)
..+. . .++|++|++++|++++..+. .+..++ +|++|++++|++++..+.. +... ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 4332 2 24677777777776643322 233443 6777777777776554433 3334 47777777777
Q ss_pred CCCCC----CcccccC-CcCCCEEeCcCCCCC
Q 026163 216 SLVGN----IPPTLGH-LTQLTTLAMSNKVAI 242 (242)
Q Consensus 216 ~l~~~----~p~~l~~-l~~L~~L~ls~N~lt 242 (242)
.+++. ++..+.. .++|++|++++|+++
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 77652 3444444 347777777777764
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.1e-15 Score=115.54 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=86.1
Q ss_pred EEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEE
Q 026163 83 IRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRL 162 (242)
Q Consensus 83 ~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 162 (242)
+.++++++ ++ +.+ +..+ .++|++|++++|+ +++..|..|.++++|++|++++|++++..+..|.++++|++|
T Consensus 15 ~~l~~~~n---~l-~~i-P~~~--~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNI---RL-ASV-PAGI--PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSS---CC-SSC-CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCC---CC-Ccc-CCCc--CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 46777776 54 345 3433 3889999999655 455667789999999999999999997666667899999999
Q ss_pred EcccCcCCCCCCcCcCCCCCCCEEEeecCCCccc
Q 026163 163 DLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGN 196 (242)
Q Consensus 163 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 196 (242)
++++|++++..+..+..+++|++|++++|.+...
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999966666699999999999999999843
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=9e-16 Score=139.23 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=46.8
Q ss_pred CCCCCcccceEe------C-CCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCE
Q 026163 65 TSDHCKWTGIRC------N-SAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQT 137 (242)
Q Consensus 65 ~~~~C~w~gv~c------~-~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 137 (242)
..++|.|.|..+ . ....++.|+++++ ++. .+ +..+. ++|++|++++|++ ..+|. .+++|++
T Consensus 18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---~L~-~l-p~~l~--~~L~~L~L~~N~l--~~lp~---~l~~L~~ 85 (622)
T 3g06_A 18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---GLT-TL-PDCLP--AHITTLVIPDNNL--TSLPA---LPPELRT 85 (622)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---CCS-CC-CSCCC--TTCSEEEECSCCC--SCCCC---CCTTCCE
T ss_pred cCCcchhccccccCcccccccCCCCcEEEecCC---CcC-cc-ChhhC--CCCcEEEecCCCC--CCCCC---cCCCCCE
Confidence 456677755322 0 1224666776665 444 33 22222 5666666665544 23444 3556666
Q ss_pred EeccCccCCCCCChhccCCcCCcEEEcccCcCC
Q 026163 138 LELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG 170 (242)
Q Consensus 138 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 170 (242)
|++++|+++ .+|. .+++|++|++++|+++
T Consensus 86 L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 86 LEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp EEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred EEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 666666665 3343 4455555555555555
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=1.4e-14 Score=127.06 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=44.8
Q ss_pred cCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCC
Q 026163 104 FSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKL 183 (242)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 183 (242)
+..+++|++|++++|.+ + .+|.. .++|++|++++|++++ +| .++++++|++|++++|++++ +|... ++|
T Consensus 149 ~~~l~~L~~L~l~~N~l-~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L 217 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSL-K-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL 217 (454)
T ss_dssp CTTCTTCCEEECCSSCC-S-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred cCCCCCCCEEECCCCcC-c-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence 44555555555554332 1 13321 1244444555554443 33 34445555555555554442 22211 244
Q ss_pred CEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 184 KILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 184 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
++|++++|.++ .+| .++.+++|++|++++|+++
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 44444444444 333 2444555555555555554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.6e-15 Score=116.10 Aligned_cols=110 Identities=25% Similarity=0.227 Sum_probs=93.7
Q ss_pred hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc
Q 026163 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK 208 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 208 (242)
+.++++|++|++++|+++ .+|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 567889999999999999 4565333344999999999999954 6899999999999999999965445568999999
Q ss_pred EEEcccCCCCCCCcc--cccCCcCCCEEeCcCCCCC
Q 026163 209 ILNLSSNSLVGNIPP--TLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 209 ~L~L~~N~l~~~~p~--~l~~l~~L~~L~ls~N~lt 242 (242)
+|++++|.++ .+|. .+..+++|++|++++|+++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 9999999997 5665 7889999999999999874
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.5e-16 Score=135.47 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=122.2
Q ss_pred CCCeEEEEecccCCCCceeeeCC----CCcCCCC-CCCEEEecCCCcccccCchhhhcC-----CCCCEEeccCccCCCC
Q 026163 79 AGSVIRVSLLWYENDNMKGELGR----FNFSCFP-NLKSFKIHSNYLLSGSIPSEITAL-----SMLQTLELPSSRLTGI 148 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~----~~~~~l~-~L~~L~l~~~~~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~ 148 (242)
..+++.|+++++ .+.+.. . ..+..++ +|++|++++|.+ ++..+..+..+ ++|++|++++|++++.
T Consensus 21 ~~~L~~L~Ls~n---~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLN---NLYSIS-TVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CTTCCEEECTTS---CGGGSC-HHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCceEEEccCC---CCChHH-HHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 455999999998 665432 3 5677888 899999997654 44556666664 9999999999999977
Q ss_pred CChhcc----CC-cCCcEEEcccCcCCCCCCcCc----CC-CCCCCEEEeecCCCcccc----ccccCCCC-CCcEEEcc
Q 026163 149 IPSEMG----RL-RNLVRLDLSDNYIGGYIPPTL----GR-LSKLKILNLSSNFLVGNI----PLTLCHLS-KLKILNLS 213 (242)
Q Consensus 149 ~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~~----p~~l~~l~-~L~~L~L~ 213 (242)
.+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.. +..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 766543 44 899999999999986655443 34 369999999999998633 34445565 99999999
Q ss_pred cCCCCCCCcccc----cCC-cCCCEEeCcCCCCC
Q 026163 214 SNSLVGNIPPTL----GHL-TQLTTLAMSNKVAI 242 (242)
Q Consensus 214 ~N~l~~~~p~~l----~~l-~~L~~L~ls~N~lt 242 (242)
+|.+++..+..+ ..+ ++|++|++++|+|+
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 999987766544 455 59999999999874
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=2.2e-14 Score=130.10 Aligned_cols=77 Identities=31% Similarity=0.358 Sum_probs=60.0
Q ss_pred cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeC
Q 026163 157 RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 157 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
++|++|++++|++++ +| ..+++|++|++++|+++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 556667777776663 44 34567888888888887 4554 5678999999999998 77888999999999999
Q ss_pred cCCCCC
Q 026163 237 SNKVAI 242 (242)
Q Consensus 237 s~N~lt 242 (242)
++|+++
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 999875
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=3.3e-15 Score=134.35 Aligned_cols=122 Identities=24% Similarity=0.342 Sum_probs=107.2
Q ss_pred CCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEe
Q 026163 109 NLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNL 188 (242)
Q Consensus 109 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 188 (242)
.|++|++++|++ + .+|. +..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l-~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDL-T-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCC-S-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCC-C-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 578899997765 3 4786 999999999999999999 889999999999999999999995 67 8999999999999
Q ss_pred ecCCCcccc-ccccCCCCCCcEEEcccCCCCCCCcc---cccCCcCCCEEeC
Q 026163 189 SSNFLVGNI-PLTLCHLSKLKILNLSSNSLVGNIPP---TLGHLTQLTTLAM 236 (242)
Q Consensus 189 ~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~l 236 (242)
++|++++.. |..++.+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999876 99999999999999999999976542 2345899999975
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=5.3e-18 Score=132.49 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=99.6
Q ss_pred cCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCC
Q 026163 124 SIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCH 203 (242)
Q Consensus 124 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 203 (242)
.+|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 345589999999999999999995 67 8889999999999999999 678777788999999999999996 55 6888
Q ss_pred CCCCcEEEcccCCCCCCCc-ccccCCcCCCEEeCcCCCC
Q 026163 204 LSKLKILNLSSNSLVGNIP-PTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 204 l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~ls~N~l 241 (242)
+++|++|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9999999999999985332 4788999999999999976
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=2.5e-14 Score=125.40 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=88.4
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILN 187 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 187 (242)
++|++|++++|++ + .+| .+.++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|+
T Consensus 131 ~~L~~L~L~~n~l-~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQL-E-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCC-S-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCC-C-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 5777777775554 2 366 47777888888888887774 55432 478888888888774 55 578888888888
Q ss_pred eecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCCC
Q 026163 188 LSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 188 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+++|++++ +|... ++|++|++++|.++ .+|. ++.+++|++|++++|+++
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 88888875 44322 57888888888887 5664 888999999999999874
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=7.1e-17 Score=141.13 Aligned_cols=137 Identities=20% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCCCCCEEEecCCCccccc---CchhhhcCCCCCEEeccCccCCCCCChhcc-----CCcCCcEEEcccCcCCCC----C
Q 026163 106 CFPNLKSFKIHSNYLLSGS---IPSEITALSMLQTLELPSSRLTGIIPSEMG-----RLRNLVRLDLSDNYIGGY----I 173 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~ 173 (242)
.+++|++|++++|++.... ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. +
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 4667777777765442211 455566677788888888777644333332 225788888888887654 3
Q ss_pred CcCcCCCCCCCEEEeecCCCccccccccCC-----CCCCcEEEcccCCCCC----CCcccccCCcCCCEEeCcCCCCC
Q 026163 174 PPTLGRLSKLKILNLSSNFLVGNIPLTLCH-----LSKLKILNLSSNSLVG----NIPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 174 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~ls~N~lt 242 (242)
+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+|+
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 455667789999999999888654443332 6789999999999986 67788888899999999999875
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=2.4e-14 Score=120.88 Aligned_cols=106 Identities=24% Similarity=0.190 Sum_probs=85.9
Q ss_pred CEEEecCCCcccccCchhhhcCCCCCEEeccC-ccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEee
Q 026163 111 KSFKIHSNYLLSGSIPSEITALSMLQTLELPS-SRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLS 189 (242)
Q Consensus 111 ~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 189 (242)
..+++++++.++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 356777552343 5788 88888999999986 99987777888999999999999999998888888999999999999
Q ss_pred cCCCccccccccCCCCCCcEEEcccCCCCC
Q 026163 190 SNFLVGNIPLTLCHLSKLKILNLSSNSLVG 219 (242)
Q Consensus 190 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 219 (242)
+|+|++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999865555565555 9999999998874
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=1.4e-16 Score=139.23 Aligned_cols=108 Identities=27% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCCEEeccCccCCC----CCChhccCCcCCcEEEcccCcCCCCCCcCc-----CCCCCCCEEEeecCCCccc----cccc
Q 026163 134 MLQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYIGGYIPPTL-----GRLSKLKILNLSSNFLVGN----IPLT 200 (242)
Q Consensus 134 ~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~ 200 (242)
+|++|++++|++++ .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 35555555555542 234444555555555555555432212111 1233455555555555432 2333
Q ss_pred cCCCCCCcEEEcccCCCCCCCccccc-----CCcCCCEEeCcCCCC
Q 026163 201 LCHLSKLKILNLSSNSLVGNIPPTLG-----HLTQLTTLAMSNKVA 241 (242)
Q Consensus 201 l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l 241 (242)
+..+++|++|++++|.+++..+..+. ..++|++|++++|.+
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 44445555555555555433222222 234555555555554
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=3.4e-14 Score=120.31 Aligned_cols=150 Identities=22% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChh------
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSE------ 152 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~------ 152 (242)
..+++.|+++++ .+.+.++...|.++++++++...+++.+.+..|..|..+++|++|++++|+++...+..
T Consensus 53 l~~L~~L~Ls~N---~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 53 FGDLEKIEISQN---DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp CTTCCEEEEECC---TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred CCCCCEEECcCC---CCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 467899999988 77777766778888887765444344444444666788888888888888876432211
Q ss_pred -------------------ccCC-cCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeec-CCCccccccccCCCCCCcEEE
Q 026163 153 -------------------MGRL-RNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSS-NFLVGNIPLTLCHLSKLKILN 211 (242)
Q Consensus 153 -------------------~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 211 (242)
|..+ ..+++|++++|+++ .+|.......+|+++++.+ |.++...+..|..+++|++|+
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 2222 35778888899888 4555555667889999875 566643345678899999999
Q ss_pred cccCCCCCCCcccccCCcCCC
Q 026163 212 LSSNSLVGNIPPTLGHLTQLT 232 (242)
Q Consensus 212 L~~N~l~~~~p~~l~~l~~L~ 232 (242)
+++|+++...+..+.++++|+
T Consensus 209 Ls~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 209 ISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp CTTSCCCCCCSSSCTTCCEEE
T ss_pred cCCCCcCccChhhhccchHhh
Confidence 999999844334444443333
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=1.3e-13 Score=116.29 Aligned_cols=111 Identities=27% Similarity=0.284 Sum_probs=90.1
Q ss_pred CCcccceEeCCCCCeEEEEecccCCCCceeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCC
Q 026163 68 HCKWTGIRCNSAGSVIRVSLLWYENDNMKGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTG 147 (242)
Q Consensus 68 ~C~w~gv~c~~~~~v~~L~l~~~~~~~~~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 147 (242)
.|.|..+.|.... ++ ..+ |. +..+++|++|+|+++|.+.+..+..|..+++|++|+|++|+|++
T Consensus 7 ~C~~~~v~~~~~n-------------~l-~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 7 PHGSSGLRCTRDG-------------AL-DSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp CSSSSCEECCSSC-------------CC-TTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred cccCCEEEcCCCC-------------CC-Ccc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce
Confidence 3788888775321 12 235 55 88999999999996355565666779999999999999999999
Q ss_pred CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCcc
Q 026163 148 IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVG 195 (242)
Q Consensus 148 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 195 (242)
..|..|.++++|++|+|++|+|++..+..+..++ |++|+|.+|.+..
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8899999999999999999999966665666665 9999999999984
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=8e-16 Score=131.57 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=109.8
Q ss_pred CCeEEEEecccCCCCceeeeC---CCCcC-CCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc--
Q 026163 80 GSVIRVSLLWYENDNMKGELG---RFNFS-CFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM-- 153 (242)
Q Consensus 80 ~~v~~L~l~~~~~~~~~~~i~---~~~~~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-- 153 (242)
..++.|+++++ .+...-. ...+. ..++|++|++++|.+...........+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGV---RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTS---CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCC---CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46888999887 5543210 11122 236899999997765322222223456788999999998875433333
Q ss_pred ---cCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCCC--
Q 026163 154 ---GRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVGN-- 220 (242)
Q Consensus 154 ---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~-- 220 (242)
...++|++|++++|.++.. ++..+...++|++|+|++|.+.+. ++..+...++|++|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2467899999999988642 334456788899999999998753 345667778899999999998753
Q ss_pred --CcccccCCcCCCEEeCcCCCCC
Q 026163 221 --IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 221 --~p~~l~~l~~L~~L~ls~N~lt 242 (242)
++..+...++|++|++++|.|+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344556788999999999875
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=2.9e-12 Score=107.44 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=50.9
Q ss_pred CcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCc-EEEcccCCCCCCCcccccCCcCCCEE
Q 026163 156 LRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLK-ILNLSSNSLVGNIPPTLGHLTQLTTL 234 (242)
Q Consensus 156 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L 234 (242)
+++|+++++++|+++...+..|.++++|+.+++.+| ++...+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456666666666666444445666666666666665 5544455566666666 666665 4543444566666666666
Q ss_pred eCcCCCC
Q 026163 235 AMSNKVA 241 (242)
Q Consensus 235 ~ls~N~l 241 (242)
++++|++
T Consensus 303 ~l~~n~i 309 (329)
T 3sb4_A 303 LATGDKI 309 (329)
T ss_dssp EECSSCC
T ss_pred EeCCCcc
Confidence 6666654
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=8.6e-14 Score=125.21 Aligned_cols=135 Identities=14% Similarity=0.084 Sum_probs=81.1
Q ss_pred CCCCCEEEecCCCcccccCchhhhc-CCCCCEEecc----CccCCCC-----CChhccCCcCCcEEEcccCc--CCCCCC
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITA-LSMLQTLELP----SSRLTGI-----IPSEMGRLRNLVRLDLSDNY--IGGYIP 174 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p 174 (242)
+++|++|++. ++.+++..+..+.. +++|++|+++ .|++++. ++..+.++++|++|++++|. +++..+
T Consensus 377 ~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4555555554 22223333333333 5666666664 4455432 22224456666666665432 443323
Q ss_pred cCcC-CCCCCCEEEeecCCCcc-ccccccCCCCCCcEEEcccCCCCCC-CcccccCCcCCCEEeCcCCCCC
Q 026163 175 PTLG-RLSKLKILNLSSNFLVG-NIPLTLCHLSKLKILNLSSNSLVGN-IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 175 ~~~~-~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~lt 242 (242)
..+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 2332 36788888888888876 3455567788899999999988654 3344567888999999998875
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=3.7e-11 Score=100.68 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=91.9
Q ss_pred CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCC-EEEeecCCCccccccccCCCCCCcEE
Q 026163 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLK-ILNLSSNFLVGNIPLTLCHLSKLKIL 210 (242)
Q Consensus 132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L 210 (242)
+++|+++++++|+++...+..|.++.+|+++++.+| ++...+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999666678999999999999998 7766677899999999 999998 7876667889999999999
Q ss_pred EcccCCCCCCCcccccCCcCCCEEeC
Q 026163 211 NLSSNSLVGNIPPTLGHLTQLTTLAM 236 (242)
Q Consensus 211 ~L~~N~l~~~~p~~l~~l~~L~~L~l 236 (242)
++++|.++...+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999766789999999999874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.9e-13 Score=113.76 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=100.9
Q ss_pred CCCCCEEEecCCCcccccCchhhhc-----CCCCCEEeccCccCCCCCChhc-cCCcCCcEEEcccCcCCCCCCcCc---
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEITA-----LSMLQTLELPSSRLTGIIPSEM-GRLRNLVRLDLSDNYIGGYIPPTL--- 177 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~--- 177 (242)
+++|++|++++|++ +......+.. .++|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46799999997765 3222222332 3699999999999975433333 346789999999999975433333
Q ss_pred --CCCCCCCEEEeecCCCccc----cccccCCCCCCcEEEcccCCCCCC----CcccccCCcCCCEEeCcCCCCC
Q 026163 178 --GRLSKLKILNLSSNFLVGN----IPLTLCHLSKLKILNLSSNSLVGN----IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 178 --~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~lt 242 (242)
...++|++|+|++|.+++. ++..+...++|++|+|++|.+++. ++..+...++|++|++++|.|+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3468899999999999752 444557789999999999999753 3566778889999999999985
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=7.6e-12 Score=112.46 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCCCCCEEEecCCCccccc----CchhhhcCCCCCEEeccCccCCC----CCChhccCCcCCcEEEcccCcC
Q 026163 106 CFPNLKSFKIHSNYLLSGS----IPSEITALSMLQTLELPSSRLTG----IIPSEMGRLRNLVRLDLSDNYI 169 (242)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l 169 (242)
.+++|++|++++|.+ ++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 455555665554432 111 22233444555555555555441 1222233444555555554443
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=1.3e-11 Score=110.88 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCCeEEEEecccCCCCceeeeCCCCcC-CCCCCCEEEecCCCccccc-CchhhhcCCCCCEEeccCccCCCCCChhc---
Q 026163 79 AGSVIRVSLLWYENDNMKGELGRFNFS-CFPNLKSFKIHSNYLLSGS-IPSEITALSMLQTLELPSSRLTGIIPSEM--- 153 (242)
Q Consensus 79 ~~~v~~L~l~~~~~~~~~~~i~~~~~~-~l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~--- 153 (242)
..+++.|+++++ .+.+.. ...+. .+++|++|++.+|..++.. ++..+.++++|++|++++|.+++..+..+
T Consensus 104 ~~~L~~L~L~~~---~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRM---VVTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESC---BCCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCCeEEeeCc---EEcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 457888888887 555443 23333 5789999999877443322 44445678999999999998776544444
Q ss_pred -cCCcCCcEEEcccCc--CCCC-CCcCcCCCCCCCEEEeecC
Q 026163 154 -GRLRNLVRLDLSDNY--IGGY-IPPTLGRLSKLKILNLSSN 191 (242)
Q Consensus 154 -~~l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~L~L~~N 191 (242)
..+++|++|++++|. ++.. ++..+.++++|++|++++|
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 356789999998886 2110 1111234678888888877
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.09 E-value=1.6e-13 Score=111.62 Aligned_cols=80 Identities=30% Similarity=0.358 Sum_probs=49.6
Q ss_pred cCCcCCcEEEcccCcCCC--CCCcCcCCCCCCCEEEeecCCCccccccccCCCC--CCcEEEcccCCCCCCCc-------
Q 026163 154 GRLRNLVRLDLSDNYIGG--YIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLS--KLKILNLSSNSLVGNIP------- 222 (242)
Q Consensus 154 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p------- 222 (242)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346677777777777765 2334455677777777777777653 1223333 77777777777776544
Q ss_pred ccccCCcCCCEEe
Q 026163 223 PTLGHLTQLTTLA 235 (242)
Q Consensus 223 ~~l~~l~~L~~L~ 235 (242)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355677777775
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=3.2e-12 Score=114.93 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCCCCEEEecCCCcccccCchhhh-cCCCCCEEecc--C----ccCCCC-----CChhccCCcCCcEEEcccCcCCCCCC
Q 026163 107 FPNLKSFKIHSNYLLSGSIPSEIT-ALSMLQTLELP--S----SRLTGI-----IPSEMGRLRNLVRLDLSDNYIGGYIP 174 (242)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p 174 (242)
+++|++|.+..++ +++.....+. .+++|++|+++ + +.+++. ++..+..+++|++|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 4556666554332 2222222332 46677777776 3 344421 111244566777777755 4443333
Q ss_pred cCcCC-CCCCCEEEeecCCCcccccccc-CCCCCCcEEEcccCCCCCCCcc-cccCCcCCCEEeCcCCCCC
Q 026163 175 PTLGR-LSKLKILNLSSNFLVGNIPLTL-CHLSKLKILNLSSNSLVGNIPP-TLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 175 ~~~~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ls~N~lt 242 (242)
..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|++|++++|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33433 7788899999888876554444 5678899999999988654443 4456888999999988763
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=5e-11 Score=101.35 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=103.5
Q ss_pred CCeEEEEecccCCC--Cc----eeeeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhc
Q 026163 80 GSVIRVSLLWYEND--NM----KGELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEM 153 (242)
Q Consensus 80 ~~v~~L~l~~~~~~--~~----~~~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 153 (242)
.+++.|.+...... .+ .+.+ ...+..+|+|+.|++.++... .++. + .+++|++|++..+.++......+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 47888877554111 11 1122 234567899999999865321 2343 3 37899999999888764433344
Q ss_pred c--CCcCCcEEEccc--CcCCCC-----CCcCc--CCCCCCCEEEeecCCCcccccccc---CCCCCCcEEEcccCCCCC
Q 026163 154 G--RLRNLVRLDLSD--NYIGGY-----IPPTL--GRLSKLKILNLSSNFLVGNIPLTL---CHLSKLKILNLSSNSLVG 219 (242)
Q Consensus 154 ~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~ 219 (242)
. .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3 689999999863 222111 11122 357899999999999875443333 357899999999999886
Q ss_pred C----CcccccCCcCCCEEeCcCCCCC
Q 026163 220 N----IPPTLGHLTQLTTLAMSNKVAI 242 (242)
Q Consensus 220 ~----~p~~l~~l~~L~~L~ls~N~lt 242 (242)
. ++..+..+++|+.|++++|.|+
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4 3334456789999999999875
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.94 E-value=1.1e-10 Score=90.05 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=49.3
Q ss_pred hcCCCCCEEeccCc-cCCCC----CChhccCCcCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEeecCCCccc----
Q 026163 130 TALSMLQTLELPSS-RLTGI----IPSEMGRLRNLVRLDLSDNYIGGY----IPPTLGRLSKLKILNLSSNFLVGN---- 196 (242)
Q Consensus 130 ~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---- 196 (242)
...+.|++|++++| .+... +...+...++|++|+|++|.+... +.+.+...++|++|+|++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33444444444444 44321 122233344455555555544321 112222334455555555555432
Q ss_pred cccccCCCCCCcEEEc--ccCCCCCC----CcccccCCcCCCEEeCcCCCC
Q 026163 197 IPLTLCHLSKLKILNL--SSNSLVGN----IPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 197 ~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l 241 (242)
+...+...+.|++|++ ++|.+... +.+.+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444455555555 55555432 223333445555555555543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.85 E-value=2.7e-08 Score=85.65 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=65.3
Q ss_pred eCCCCcCCCCCCCEEEecCCCcccccCc-hhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCC-----CC
Q 026163 99 LGRFNFSCFPNLKSFKIHSNYLLSGSIP-SEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIG-----GY 172 (242)
Q Consensus 99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~ 172 (242)
++...|..+++|+.+++.. +. . .++ ..|.+ .+|+.+.+. +.++......|.++++|+.+++.+|.+. ..
T Consensus 217 I~~~aF~~~~~L~~l~l~~-~l-~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 217 IGSQAFLKTSQLKTIEIPE-NV-S-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp ECTTTTTTCTTCCCEECCT-TC-C-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred ehhhHhhCCCCCCEEecCC-Cc-c-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 4355566666666666653 22 1 122 22333 445555552 2333333445555666666666555443 12
Q ss_pred CCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 173 IPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 173 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
.+..|..+++|+.+.+. +.++......|.++++|+.+.+..| ++......|.++ +|+.+++++|.
T Consensus 292 ~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 33445555556666555 2344333445555555666655433 332333455555 56666655554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=4.7e-08 Score=84.14 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=74.7
Q ss_pred eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEccc-----------
Q 026163 98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSD----------- 166 (242)
Q Consensus 98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~----------- 166 (242)
.++...|..+++|+.+++..+++ ..++.......+|+.+.+..+ ++..-...|.++++|+.+++..
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~ 246 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKI--TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFR 246 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCC--SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTT
T ss_pred EehHHHhhCcccCCeeecCCCcc--eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccc
Confidence 34356677777777777764433 123322112344444444422 3322333444444444444443
Q ss_pred ----------CcCCCCCCcCcCCCCCCCEEEeecCCCc-----cccccccCCCCCCcEEEcccCCCCCCCcccccCCcCC
Q 026163 167 ----------NYIGGYIPPTLGRLSKLKILNLSSNFLV-----GNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQL 231 (242)
Q Consensus 167 ----------N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 231 (242)
+.++......|.++++|+.+.+.+|.+. ...+..|..+++|+.+++. +.++......|.++++|
T Consensus 247 ~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 247 ESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp TCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred cCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 2333333455667777777777766654 2344567777777777776 34554444667777777
Q ss_pred CEEeCcCC
Q 026163 232 TTLAMSNK 239 (242)
Q Consensus 232 ~~L~ls~N 239 (242)
+.+++..|
T Consensus 326 ~~l~lp~~ 333 (401)
T 4fdw_A 326 TQLTIPAN 333 (401)
T ss_dssp CEEEECTT
T ss_pred cEEEECcc
Confidence 77777544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=3e-09 Score=90.35 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=104.1
Q ss_pred CCCCeEEEEecccCCCCcee--------eeCCCCcCCCCCCCEEEecCCCc----c----cccCchhhhcCCCCCEEecc
Q 026163 78 SAGSVIRVSLLWYENDNMKG--------ELGRFNFSCFPNLKSFKIHSNYL----L----SGSIPSEITALSMLQTLELP 141 (242)
Q Consensus 78 ~~~~v~~L~l~~~~~~~~~~--------~i~~~~~~~l~~L~~L~l~~~~~----~----~~~~p~~~~~l~~L~~L~l~ 141 (242)
...+|+.|.+... .+.+ .+ ......+++|+.|.+.+... + .+.+...+..+|+|+.|+++
T Consensus 105 ~~~~v~~L~lg~~---~~~~~~~~~~~~~L-~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~ 180 (362)
T 2ra8_A 105 KLPSLKQITIGXW---GYEGEDCSDIADGI-VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180 (362)
T ss_dssp TGGGCSEEEECCC---CSSSCCSHHHHHHH-HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE
T ss_pred CchhcceEEEccc---ccCCCcHHHHHHHH-HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe
Confidence 3446777877654 3221 11 23355788999999974322 1 12355667889999999999
Q ss_pred CccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC--CCCCCCEEEeec--CCCccc-----ccccc--CCCCCCcEE
Q 026163 142 SSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG--RLSKLKILNLSS--NFLVGN-----IPLTL--CHLSKLKIL 210 (242)
Q Consensus 142 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L 210 (242)
+|.-. .++. + .+++|++|++..+.+.......+. .+++|++|+|+. |...+. +...+ ..+|+|++|
T Consensus 181 g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 181 GTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp CCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred CCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence 88422 2333 3 388999999999887643323333 689999999964 221111 11122 357999999
Q ss_pred EcccCCCCCCCccccc---CCcCCCEEeCcCCCCC
Q 026163 211 NLSSNSLVGNIPPTLG---HLTQLTTLAMSNKVAI 242 (242)
Q Consensus 211 ~L~~N~l~~~~p~~l~---~l~~L~~L~ls~N~lt 242 (242)
++.+|.+.+..+..+. .+++|++|+|+.|.++
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 9999999754444443 5789999999999874
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1.1e-09 Score=84.26 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=88.9
Q ss_pred CCCcCCCCCCCEEEecCC-Ccccc---cCchhhhcCCCCCEEeccCccCCCC----CChhccCCcCCcEEEcccCcCCCC
Q 026163 101 RFNFSCFPNLKSFKIHSN-YLLSG---SIPSEITALSMLQTLELPSSRLTGI----IPSEMGRLRNLVRLDLSDNYIGGY 172 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 172 (242)
...+...+.|++|++++| .+-.. .+...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999977 54221 1334466778999999999999743 233455568899999999999743
Q ss_pred ----CCcCcCCCCCCCEEEe--ecCCCccc----cccccCCCCCCcEEEcccCCCC
Q 026163 173 ----IPPTLGRLSKLKILNL--SSNFLVGN----IPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 173 ----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3556777889999999 88999864 3345566789999999999885
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=8.1e-10 Score=89.76 Aligned_cols=80 Identities=28% Similarity=0.275 Sum_probs=65.6
Q ss_pred hcCCCCCEEeccCccCCC--CCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC--CCCEEEeecCCCcccccc------
Q 026163 130 TALSMLQTLELPSSRLTG--IIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS--KLKILNLSSNFLVGNIPL------ 199 (242)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~------ 199 (242)
.++++|++|+|++|++++ .+|..+..+++|++|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568999999999999997 4456677899999999999999854 3344444 999999999999976552
Q ss_pred -ccCCCCCCcEEE
Q 026163 200 -TLCHLSKLKILN 211 (242)
Q Consensus 200 -~l~~l~~L~~L~ 211 (242)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367789999887
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=5.1e-08 Score=74.00 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCc-CCCCCCcCcCCC----CCCCEEEeecCC-CccccccccCCCC
Q 026163 132 LSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNY-IGGYIPPTLGRL----SKLKILNLSSNF-LVGNIPLTLCHLS 205 (242)
Q Consensus 132 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~ 205 (242)
-.+|++||++++.+++.--..+.++++|++|+|++|. ++..--..+..+ ++|++|++++|. +++..-..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999886655667899999999999985 664333345553 479999999984 8875556678899
Q ss_pred CCcEEEcccCC-CC
Q 026163 206 KLKILNLSSNS-LV 218 (242)
Q Consensus 206 ~L~~L~L~~N~-l~ 218 (242)
+|++|+++++. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999986 44
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=4.6e-08 Score=74.27 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCCCEEEecCCCcccccCchhhhcCCCCCEEeccCcc-CCCCCChhccCC----cCCcEEEcccCc-CCCCCCcCcCCCC
Q 026163 108 PNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSR-LTGIIPSEMGRL----RNLVRLDLSDNY-IGGYIPPTLGRLS 181 (242)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~ 181 (242)
.+|+.||++++.+....+ ..+..+++|++|+|++|. +++.--..+..+ ++|++|++++|. ++..--..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 469999999887543333 346789999999999985 665444455554 479999999985 7654444567889
Q ss_pred CCCEEEeecCC-Cc
Q 026163 182 KLKILNLSSNF-LV 194 (242)
Q Consensus 182 ~L~~L~L~~N~-l~ 194 (242)
+|++|+++++. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 99999999985 54
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=1.3e-05 Score=68.51 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=89.2
Q ss_pred eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163 98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177 (242)
Q Consensus 98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 177 (242)
.+....|..+..|+.+.+..+ .. ..-...|.+++.|+.+.+. +.++......|.++.+|+.+++..+ ++......|
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~-~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDS-VV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTT-CC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred EcccceeeecccccEEecccc-cc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 344567888888888888733 21 2223457788889998886 4455445567888899999999765 553445678
Q ss_pred CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcCCCC
Q 026163 178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKVA 241 (242)
Q Consensus 178 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 241 (242)
.++.+|+.+.+..+ ++......|.++++|+.+++.++... ...+....+|+.+.+..|.+
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 88899999998654 66455667889999999998887543 24566777888888877654
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=6.3e-05 Score=63.64 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCC
Q 026163 102 FNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLS 181 (242)
Q Consensus 102 ~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 181 (242)
..+....+++.+.+..+ . ...-...+..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|..+.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-V-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-C-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-e-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 34455556666666522 2 1112233556666666666554 33233445556666666666443 3323334566666
Q ss_pred CCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 182 KLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 182 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
+|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 6666666666666444555666666666666543 4323334566666666666543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=8e-05 Score=63.51 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=66.8
Q ss_pred CCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCC
Q 026163 101 RFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRL 180 (242)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 180 (242)
...+..+..++.+.+..+.. ......|..+..++.+....+.+. ...+..+.+|+.+.+..+ ++......|.++
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESC 319 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCC
Confidence 45566667777777663321 112223455555555555443321 123455556666666543 332334445666
Q ss_pred CCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEEeCcC
Q 026163 181 SKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTLAMSN 238 (242)
Q Consensus 181 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~ 238 (242)
.+|+.+++..+ ++......|.++++|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 66666666433 44333445666666666666544 4433334556666666665543
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=2.9e-06 Score=65.53 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=54.3
Q ss_pred cCCCCCEEeccCc-cCCCC----CChhccCCcCCcEEEcccCcCCCCC----CcCcCCCCCCCEEEeecCCCccc----c
Q 026163 131 ALSMLQTLELPSS-RLTGI----IPSEMGRLRNLVRLDLSDNYIGGYI----PPTLGRLSKLKILNLSSNFLVGN----I 197 (242)
Q Consensus 131 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~----~ 197 (242)
+-+.|++|+|++| ++.+. +...+..-..|++|+|++|+|.... .+.+..-+.|++|+|+.|.|.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445556666553 44321 2223344455666666666654221 12223345566666666666542 2
Q ss_pred ccccCCCCCCcEEEcccC---CCCC----CCcccccCCcCCCEEeCcCCC
Q 026163 198 PLTLCHLSKLKILNLSSN---SLVG----NIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 198 p~~l~~l~~L~~L~L~~N---~l~~----~~p~~l~~l~~L~~L~ls~N~ 240 (242)
.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233444455666666644 2221 123344555666666666553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.00015 Score=61.81 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=85.2
Q ss_pred hhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCC
Q 026163 128 EITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKL 207 (242)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 207 (242)
.|.++..|+.+.+..+..+ .....|.++..|+.+.+. +.++......|.++.+|+.+.+..+ ++......|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4677888999988766543 445677889999999996 4455455567899999999999865 664556789999999
Q ss_pred cEEEcccCCCCCCCcccccCCcCCCEEeCcCCC
Q 026163 208 KILNLSSNSLVGNIPPTLGHLTQLTTLAMSNKV 240 (242)
Q Consensus 208 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 240 (242)
+.+.+..+ ++..-..+|.++++|+.+++.+|.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 99999755 664455789999999999998764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.78 E-value=0.00021 Score=60.92 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=97.0
Q ss_pred eCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCcC
Q 026163 99 LGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLG 178 (242)
Q Consensus 99 i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 178 (242)
+....|.....++.+......+ ....|..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++......|.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence 4466788889999988873321 1234788999999999765 55455667889999999999755 6645567899
Q ss_pred CCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCcCCCEE
Q 026163 179 RLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLTQLTTL 234 (242)
Q Consensus 179 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 234 (242)
++.+|+.+.+..+ ++......|.++++|+.+++..+ +. .+...+.++++|+.+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999999877 66566678999999999999765 33 345678888888765
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.72 E-value=0.00022 Score=60.27 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=93.2
Q ss_pred eeCCCCcCCCCCCCEEEecCCCcccccCchhhhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcccCcCCCCCCcCc
Q 026163 98 ELGRFNFSCFPNLKSFKIHSNYLLSGSIPSEITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLSDNYIGGYIPPTL 177 (242)
Q Consensus 98 ~i~~~~~~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 177 (242)
.++...+..+..|+.+.+..+ . ...-...|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|
T Consensus 230 ~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 230 TLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp EECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred EEccccccCCccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhh
Confidence 344667888899999999743 3 2222345788999999999754 553445678899999999999988885666789
Q ss_pred CCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCCCCCcccccCCc
Q 026163 178 GRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLVGNIPPTLGHLT 229 (242)
Q Consensus 178 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 229 (242)
.++.+|+.+.+..+ ++......|.++++|+.+.+..+ ++..-..+|.+++
T Consensus 307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 99999999999755 66455667999999999988654 4423334555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.40 E-value=0.00031 Score=50.39 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=41.9
Q ss_pred cEEEcccCcCC-CCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccCCCC
Q 026163 160 VRLDLSDNYIG-GYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSNSLV 218 (242)
Q Consensus 160 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 218 (242)
..++-+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888876 34554432 36888888888888655666788888888888888875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=5.1e-05 Score=58.47 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=66.2
Q ss_pred ccCCcCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEeecCCCcccc----ccccCCCCCCcEEEcccCCCCCC---
Q 026163 153 MGRLRNLVRLDLSDN-YIGGY----IPPTLGRLSKLKILNLSSNFLVGNI----PLTLCHLSKLKILNLSSNSLVGN--- 220 (242)
Q Consensus 153 ~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~--- 220 (242)
+.+-+.|++|+|++| +|... +.+.+..-+.|+.|+|++|++.+.. .+.+..-+.|++|+|++|.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455678999999986 77532 3345666789999999999998643 33455668899999999999853
Q ss_pred -CcccccCCcCCCEEeCcCC
Q 026163 221 -IPPTLGHLTQLTTLAMSNK 239 (242)
Q Consensus 221 -~p~~l~~l~~L~~L~ls~N 239 (242)
+.+.+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 3456667788999999865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00065 Score=48.68 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=46.1
Q ss_pred CEEeccCccCC-CCCChhccCCcCCcEEEcccCcCCCCCCcCcCCCCCCCEEEeecCCCc
Q 026163 136 QTLELPSSRLT-GIIPSEMGRLRNLVRLDLSDNYIGGYIPPTLGRLSKLKILNLSSNFLV 194 (242)
Q Consensus 136 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 194 (242)
..++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 34565432 47999999999999666677899999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.87 E-value=19 Score=23.71 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=36.2
Q ss_pred CcCCCCCCcCcCCCCCCCEEEeecCCCccccccccCCCCCCcEEEcccC
Q 026163 167 NYIGGYIPPTLGRLSKLKILNLSSNFLVGNIPLTLCHLSKLKILNLSSN 215 (242)
Q Consensus 167 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 215 (242)
..++..-...|.++.+|+.+.+-.+ ++......|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455455667889999999999875 44355668999999999998764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.80 E-value=38 Score=22.25 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=16.4
Q ss_pred hhcCCCCCEEeccCccCCCCCChhccCCcCCcEEEcc
Q 026163 129 ITALSMLQTLELPSSRLTGIIPSEMGRLRNLVRLDLS 165 (242)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 165 (242)
|.++..|+.+.+..+ ++..-...|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 455555555555443 222223344445555555443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=25.13 E-value=17 Score=16.46 Aligned_cols=10 Identities=30% Similarity=1.096 Sum_probs=7.4
Q ss_pred CCCcccceEe
Q 026163 67 DHCKWTGIRC 76 (242)
Q Consensus 67 ~~C~w~gv~c 76 (242)
..|+|+|..-
T Consensus 6 gacswrglen 15 (23)
T 3ox7_P 6 GACSWRGLEN 15 (26)
T ss_pred cccccccchh
Confidence 4699998753
Done!