BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026164
MAATFPQMPLASPIISRHGDNQINQHHPLFAATSWRASKLCLCCSRRSSQRVVALVGKGD
TDLRVAQENDLQDQDQEDEEEEEEATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMI
EDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVE
ATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAAEIEDAGGGDDPEVPSALVCFLLSL
SL

High Scoring Gene Products

Symbol, full name Information P value
CEST
AT5G44650 		protein from Arabidopsis thaliana 2.5e-49

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026164
        (242 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2152165 - symbol:CEST "AT5G44650" species:3702...   514  2.5e-49   1


>TAIR|locus:2152165 [details] [associations]
            symbol:CEST "AT5G44650" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0048564 "photosystem I assembly" evidence=IMP] [GO:0009414
            "response to water deprivation" evidence=IMP] [GO:0009658
            "chloroplast organization" evidence=IMP] [GO:0010286 "heat
            acclimation" evidence=IMP] [GO:0042538 "hyperosmotic salinity
            response" evidence=IMP] [GO:0080183 "response to photooxidative
            stress" evidence=IMP] EMBL:CP002688 GO:GO:0009414 GO:GO:0009658
            GO:GO:0009535 GO:GO:0042538 EMBL:AB024024 GO:GO:0010286
            GO:GO:0048564 GO:GO:0080183 UniGene:At.30061 EMBL:AK226434
            IPI:IPI00527454 RefSeq:NP_568637.1 STRING:Q9LU01 PRIDE:Q9LU01
            EnsemblPlants:AT5G44650.1 GeneID:834494 KEGG:ath:AT5G44650
            TAIR:At5g44650 InParanoid:Q9LU01 OMA:DMIFSEV PhylomeDB:Q9LU01
            ProtClustDB:CLSN2689930 Genevestigator:Q9LU01 Uniprot:Q9LU01
        Length = 280

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 96/137 (70%), Positives = 120/137 (87%)

Query:    93 IAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQV 152
             + ++KRV+ELLR+NRDM+FSEVKLTIMIEDPRE+ERRRLLGIED++ P+RDDLAEALEQV
Sbjct:   110 VNEIKRVIELLRRNRDMIFSEVKLTIMIEDPRELERRRLLGIEDADTPSRDDLAEALEQV 169

Query:   153 NEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDW 212
             N+GK+PK+R  LRML EEM++WPNLEVE +K++  KS+YAK TDTGIDP+ AAKRLN++W
Sbjct:   170 NDGKIPKDRATLRMLHEEMIRWPNLEVEVSKKQRGKSMYAKSTDTGIDPKEAAKRLNVEW 229

Query:   213 DSAAEIEDAGGGDDPEV 229
             DSAA IE+    D+  V
Sbjct:   230 DSAAAIEEVDVDDEQGV 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Total cpu time:  17.55u 0.19s 17.74t   Elapsed:  00:00:01
  Start:  Fri May 10 00:27:59 2013   End:  Fri May 10 00:28:00 2013

Back to top