BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026164
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 286 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 342
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 343 VKNLRNKVLKSG 354
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 286 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 342
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 343 VKNLRNKVLKSG 354
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 286 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 342
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 343 VKNLRNKVLKSG 354
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 290 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 346
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 347 VKNLRNKVLKSG 358
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 286 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 342
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 343 VKNLRNKVLKSG 354
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 127 ERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQWPNLEVEATKQKP 186
RR L G + ++ DD+ + + +P+ ++ L ++++QWP EVE + K
Sbjct: 286 NRRILWGWTNESSSVEDDVEKGWSGIQT--IPR-KIWLDRSGKQLIQWPVREVERLRTKQ 342
Query: 187 SKSLYAKVTDTG 198
K+L KV +G
Sbjct: 343 VKNLRNKVLKSG 354
>pdb|1DKL|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 4.5
(No Ligand Bound)
pdb|1DKL|B Chain B, Crystal Structure Of Escherichia Coli Phytase At Ph 4.5
(No Ligand Bound)
Length = 410
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 95 QVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNE 154
QV V + L++ RD K + + P + L G E+ NA LA + VNE
Sbjct: 349 QVSLVFQTLQQMRD------KTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNE 402
Query: 155 GKVP 158
++P
Sbjct: 403 ARIP 406
>pdb|1DKP|A Chain A, Crystal Structure Of Phytate Complex Of Escherichia Coli
Phytase At Ph 6.6. Phytate Is Bound With Its 3-Phosphate
In The Active Site. Hg2+ Cation Acts As An
Intermolecular Bridge
pdb|1DKQ|A Chain A, Crystal Structure Of Phytate Complex Escherichia Coli
Phytase At Ph 5.0. Phytate Is Bound With Its 3-Phosphate
In The Active Site. Hg2+ Cation Acts As An
Intermolecular Bridge
Length = 410
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 95 QVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNE 154
QV V + L++ RD K + + P + L G E+ NA LA + VNE
Sbjct: 349 QVSLVFQTLQQMRD------KTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNE 402
Query: 155 GKVP 158
++P
Sbjct: 403 ARIP 406
>pdb|1DKN|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 5.0
With Hg2+ Cation Acting As An Intermolecular Bridge
pdb|1DKO|A Chain A, Crystal Structure Of Tungstate Complex Of Escherichia Coli
Phytase At Ph 6.6 With Tungstate Bound At The Active
Site And With Hg2+ Cation Acting As An Intermolecular
Bridge
pdb|1DKM|A Chain A, Crystal Structure Of Escherichia Coli Phytase At Ph 6.6
With Hg2+ Cation Acting As An Intermolecular Bridge
Length = 410
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 95 QVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNE 154
QV V + L++ RD K + + P + L G E+ NA LA + VNE
Sbjct: 349 QVSLVFQTLQQMRD------KTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNE 402
Query: 155 GKVP 158
++P
Sbjct: 403 ARIP 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,775,949
Number of Sequences: 62578
Number of extensions: 186923
Number of successful extensions: 514
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 14
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)