Query 026164
Match_columns 242
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 07:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xz9_A Phosphoenolpyruvate-pro 70.3 5.7 0.0002 34.8 5.1 65 85-151 145-213 (324)
2 2lqo_A Putative glutaredoxin R 62.0 14 0.00047 26.6 4.9 55 92-153 16-83 (92)
3 3fjv_A Uncharacterized novel p 57.6 5.8 0.0002 33.8 2.6 27 111-137 84-114 (194)
4 3d8h_A Glycolytic phosphoglyce 56.5 3.6 0.00012 33.5 1.1 45 19-63 2-47 (267)
5 2hwg_A Phosphoenolpyruvate-pro 55.2 16 0.00056 34.7 5.5 63 85-149 394-460 (575)
6 3kz3_A Repressor protein CI; f 54.6 9.4 0.00032 25.2 2.8 64 84-171 1-64 (80)
7 2wqd_A Phosphoenolpyruvate-pro 54.1 17 0.00057 34.6 5.4 43 85-128 396-440 (572)
8 3cz5_A Two-component response 48.3 64 0.0022 22.2 6.4 63 112-174 78-144 (153)
9 3eul_A Possible nitrate/nitrit 45.9 69 0.0024 22.1 6.3 60 112-171 88-151 (152)
10 3quf_A Extracellular solute-bi 45.3 4.5 0.00015 33.2 0.0 20 132-153 151-171 (414)
11 1rwy_A Parvalbumin alpha; EF-h 44.2 6.4 0.00022 26.3 0.7 67 105-171 20-89 (109)
12 1lmb_3 Protein (lambda repress 41.3 20 0.00069 23.8 2.8 64 84-171 6-69 (92)
13 1pva_A Parvalbumin; calcium bi 39.6 6.4 0.00022 26.3 0.1 67 105-171 21-90 (110)
14 2fgx_A Putative thioredoxin; N 39.3 21 0.0007 26.6 2.8 40 90-135 40-79 (107)
15 2qu8_A Putative nucleolar GTP- 39.1 9.5 0.00032 29.2 1.0 10 20-29 3-12 (228)
16 3rku_A Oxidoreductase YMR226C; 39.1 6.4 0.00022 32.2 0.0 14 19-32 2-15 (287)
17 2l1p_A DNA-binding protein SAT 37.6 5.7 0.0002 30.3 -0.5 25 84-109 58-82 (83)
18 1z6g_A Guanylate kinase; struc 37.2 7.2 0.00025 30.6 0.1 18 19-36 2-19 (218)
19 2b6h_A ADP-ribosylation factor 36.6 15 0.00052 27.2 1.8 11 51-61 30-40 (192)
20 2cob_A LCOR protein; MLR2, KIA 36.1 25 0.00085 25.9 2.8 24 139-162 13-36 (70)
21 2pvb_A Protein (parvalbumin); 34.1 7.8 0.00027 25.9 -0.2 40 132-171 50-89 (108)
22 2qry_A Thiamine-binding peripl 32.2 9.6 0.00033 30.6 0.0 11 20-30 3-13 (330)
23 4f6o_A Metacaspase-1; rossmann 31.2 1.9E+02 0.0066 25.9 8.3 88 33-155 36-124 (350)
24 2k8s_A Thioredoxin; dimer, str 31.1 20 0.0007 23.3 1.5 28 91-118 13-40 (80)
25 2q58_A Fragment, farnesyl pyro 30.7 11 0.00036 33.4 0.0 12 19-30 2-13 (368)
26 2vws_A YFAU, 2-keto-3-deoxy su 29.2 33 0.0011 28.6 2.8 37 113-149 145-184 (267)
27 1bu3_A Calcium-binding protein 28.1 17 0.00057 24.3 0.7 41 131-171 50-90 (109)
28 3d40_A FOMA protein; fosfomyci 26.9 18 0.00063 30.4 0.9 18 88-105 44-61 (286)
29 2pvu_A ARTJ; basic amino acid 26.8 14 0.00046 28.2 0.0 11 20-30 3-13 (272)
30 1p7t_A MSG, malate synthase G; 26.0 79 0.0027 31.7 5.2 40 86-128 395-434 (731)
31 3h4x_A Phosphatidylinositol-sp 25.8 1.4E+02 0.0048 27.5 6.4 75 98-181 106-186 (339)
32 4dcu_A GTP-binding protein ENG 25.6 23 0.00078 31.0 1.2 11 20-30 3-13 (456)
33 3cux_A Malate synthase; TIM ba 25.6 80 0.0027 30.1 5.0 38 86-126 214-251 (528)
34 2x0s_A Pyruvate phosphate diki 25.5 80 0.0028 31.5 5.2 84 85-169 734-838 (913)
35 2bf9_A Pancreatic hormone; tur 25.5 60 0.0021 21.5 2.9 25 83-107 10-35 (36)
36 4fe7_A Xylose operon regulator 24.9 18 0.00063 30.3 0.5 14 19-32 2-15 (412)
37 1h6z_A Pyruvate phosphate diki 24.8 85 0.0029 31.8 5.2 43 85-128 734-777 (913)
38 2iai_A Putative transcriptiona 24.7 20 0.00068 26.9 0.6 14 19-32 2-15 (230)
39 1dxe_A 2-dehydro-3-deoxy-galac 24.6 41 0.0014 27.7 2.5 37 113-149 145-184 (256)
40 2acm_A Mucin-1; auto-catalytic 24.5 16 0.00055 27.0 0.0 14 20-33 2-15 (66)
41 2p5s_A RAS and EF-hand domain 24.4 23 0.00078 26.1 0.9 9 22-30 5-13 (199)
42 2w1s_A Hyaluronoglucosaminidas 24.4 16 0.00054 29.3 -0.0 22 20-41 3-29 (192)
43 2v5j_A 2,4-dihydroxyhept-2-ENE 23.4 36 0.0012 29.1 2.0 37 113-149 166-205 (287)
44 3fs7_A Parvalbumin, thymic; ca 23.3 17 0.00057 24.3 -0.1 41 131-171 50-90 (109)
45 2jn4_A Hypothetical protein FI 23.0 29 0.00098 26.7 1.2 45 20-67 3-48 (87)
46 1f8p_A Neuropeptide Y (PNPY); 22.9 73 0.0025 21.1 3.0 25 83-107 10-35 (37)
47 2wte_A CSA3; antiviral protein 22.8 54 0.0019 27.3 2.9 64 160-230 179-243 (244)
48 2v84_A Spermidine/putrescine A 22.6 18 0.00062 29.2 0.0 9 21-29 4-12 (343)
49 1bba_A Bovine pancreatic polyp 22.4 54 0.0018 21.8 2.3 25 83-107 10-35 (36)
50 3un6_A Hypothetical protein sa 22.3 19 0.00063 29.3 0.0 15 19-33 2-16 (341)
51 2auw_A Hypothetical protein NE 22.3 1.8E+02 0.0063 23.7 5.9 83 85-195 74-163 (170)
52 3qz6_A HPCH/HPAI aldolase; str 21.7 88 0.003 26.2 4.0 37 113-149 143-182 (261)
53 1rro_A RAT oncomodulin; calciu 21.5 16 0.00055 24.4 -0.4 32 139-171 57-89 (108)
54 4eo3_A Bacterioferritin comigr 21.3 1E+02 0.0035 26.2 4.4 50 92-153 126-175 (322)
55 1kkx_A Transcription regulator 21.0 27 0.00092 26.9 0.7 44 21-64 6-51 (123)
56 3r4i_A Citrate lyase; TIM beta 20.9 91 0.0031 27.3 4.1 39 86-128 121-159 (339)
57 3q6b_A Outer membrane protein 20.9 1.3E+02 0.0043 23.4 4.5 29 88-116 65-93 (189)
58 3nmz_A APC variant protein; pr 20.8 21 0.00071 32.3 0.0 18 19-36 2-19 (458)
59 3hdv_A Response regulator; PSI 20.8 1.9E+02 0.0066 19.2 5.9 49 111-159 79-131 (136)
60 2yfa_A MCPS, methyl-accepting 20.6 21 0.00072 27.8 0.0 25 84-108 72-96 (258)
61 3qqw_A Putative citrate lyase; 20.6 91 0.0031 27.1 4.0 40 86-129 122-161 (332)
62 2ew1_A RAS-related protein RAB 20.5 21 0.00072 27.1 0.0 11 20-30 3-13 (201)
63 5pal_A Parvalbumin; calcium-bi 20.4 40 0.0014 22.4 1.4 40 131-171 49-89 (109)
64 2fg5_A RAB-22B, RAS-related pr 20.3 22 0.00074 26.1 0.0 14 93-106 111-124 (192)
65 2l60_A Peptide YY; GPCR ligand 20.2 90 0.0031 21.1 3.0 25 83-107 14-39 (41)
66 2f33_A Calbindin; EF-hand, Ca2 20.1 2.1E+02 0.0071 21.3 5.4 67 95-161 59-143 (263)
No 1
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=70.28 E-value=5.7 Score=34.85 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.5
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEEecCcHHHHHHHhh-CCCCCCCCC--hHHHHHHHHH
Q 026164 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAPT--RDDLAEALEQ 151 (242)
Q Consensus 85 ~sPeDl~~v~eIkrvL~lLk~~RDMsF~-EVKLTImIEDPR~~Errr~l-GIED~~g~s--rddla~AL~e 151 (242)
-|++|++.++++.+-.+.--+.+...|| ++++-+|||.|+.+..=..+ .. -|++| -.||...+--
T Consensus 145 ~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia~~--vD~~siGtnDLtq~~lg 213 (324)
T 2xz9_A 145 SSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILAKE--VDFFSIGTNDLTQYTLA 213 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHTTT--CSEEEECHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh--CcEEEECHHHHHHHHhC
Confidence 3667766666655444332224455676 59999999999999874433 22 44443 6788876533
No 2
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=62.01 E-value=14 Score=26.56 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHH-Hhh-C--------CCCC---CCCChHHHHHHHHHhh
Q 026164 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERR-RLL-G--------IEDS---NAPTRDDLAEALEQVN 153 (242)
Q Consensus 92 ~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Err-r~l-G--------IED~---~g~srddla~AL~eV~ 153 (242)
||...|++|+- +...|.|+.+. +||..++.= ++. | |.|. .+++.+++.++|.++.
T Consensus 16 ~C~~aK~~L~~----~gi~y~~idi~---~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 16 YCLRLKTALTA----NRIAYDEVDIE---HNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp SHHHHHHHHHH----TTCCCEEEETT---TCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh----cCCceEEEEcC---CCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhc
Confidence 78888887753 57889887654 577665532 222 4 3443 3678899999988864
No 3
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=57.63 E-value=5.8 Score=33.81 Aligned_cols=27 Identities=44% Similarity=0.544 Sum_probs=22.5
Q ss_pred ccceEEEEEecCcHHHHHHHh----hCCCCC
Q 026164 111 FSEVKLTIMIEDPREVERRRL----LGIEDS 137 (242)
Q Consensus 111 F~EVKLTImIEDPR~~Errr~----lGIED~ 137 (242)
=++.|.|+|||=|...|||+. .||||.
T Consensus 84 ~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~ 114 (194)
T 3fjv_A 84 GSNLKATLQIEYENETQRRAALARLVGIEDR 114 (194)
T ss_dssp SSEEEEEEEECCSSHHHHHHHHHHTTTGGGS
T ss_pred CCcEEEEEEEEcCCHHHHHHHHHHhcCccce
Confidence 368999999999999999864 588874
No 4
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=56.46 E-value=3.6 Score=33.46 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=15.8
Q ss_pred CCCCccccCCcccccccccccchhhhccccc-CccceeccCCCCcc
Q 026164 19 GDNQINQHHPLFAATSWRASKLCLCCSRRSS-QRVVALVGKGDTDL 63 (242)
Q Consensus 19 s~~~~~~hh~~~~~~~~~~s~l~~~~~rr~s-~~~~~~vgked~~l 63 (242)
+|+.+||||++-+..+..-.+|-+.||-.+. |.....-|.-|..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~M~~l~LvRHGet~~n~~~~~~G~~D~pL 47 (267)
T 3d8h_A 2 GSSHHHHHHSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSL 47 (267)
T ss_dssp ------------------CEEEEEEECCCBTTTTTTBCCTTCCCCB
T ss_pred CccccccccccCCCCcccceEEEEEeCCCCccccccccCCCCCCCc
Confidence 3556777887766644444478888887765 44344445544444
No 5
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=55.20 E-value=16 Score=34.68 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=39.5
Q ss_pred CChHhHHHHHHHHHHHHHHHhhcccccc-ceEEEEEecCcHHHHHHHhh-CCCCCCCCC--hHHHHHHH
Q 026164 85 ATPEDLENIAQVKRVLELLRKNRDMLFS-EVKLTIMIEDPREVERRRLL-GIEDSNAPT--RDDLAEAL 149 (242)
Q Consensus 85 ~sPeDl~~v~eIkrvL~lLk~~RDMsF~-EVKLTImIEDPR~~Errr~l-GIED~~g~s--rddla~AL 149 (242)
-|+++++.++++.+-.+.--+.+...|| ++++-+|||-|+.+..=..+ .. -|++| -.||.+..
T Consensus 394 ~t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~--vDf~siGtNDLtqy~ 460 (575)
T 2hwg_A 394 ISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKE--VDFFSIGTNDLTQYT 460 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHHTT--CSEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHh--CCEEEECHHHHHHHH
Confidence 3667777666665433322245667787 69999999999998874332 22 34333 56777744
No 6
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=54.65 E-value=9.4 Score=25.21 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026164 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (242)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A 163 (242)
+.||+++.+...+...|+.+++.+.||-.|+- +.+|| |+ .++-.+..|+.+-+-..
T Consensus 1 ~lt~~~~~~~~~l~~~l~~~r~~~gltq~~lA--------------~~~gv------s~----~~is~~e~g~~~~~~~~ 56 (80)
T 3kz3_A 1 SLTQEQLEDARRLKAIWEKKKNELGLSYESVA--------------DKMGM------GQ----SAVAALFNGINALNAYN 56 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHTTS------CH----HHHHHHHTTSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHhCc------CH----HHHHHHHcCCCCCCHHH
Confidence 35889999999999999988887776654431 23443 32 34556667776655566
Q ss_pred HHHHHHHH
Q 026164 164 LRMLAEEM 171 (242)
Q Consensus 164 L~~L~eEm 171 (242)
+..|++-+
T Consensus 57 ~~~ia~~l 64 (80)
T 3kz3_A 57 AALLAKIL 64 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 7
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=54.12 E-value=17 Score=34.64 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=29.8
Q ss_pred CChHhHHHHHHHHHHHH-HHHhhcccccc-ceEEEEEecCcHHHHH
Q 026164 85 ATPEDLENIAQVKRVLE-LLRKNRDMLFS-EVKLTIMIEDPREVER 128 (242)
Q Consensus 85 ~sPeDl~~v~eIkrvL~-lLk~~RDMsF~-EVKLTImIEDPR~~Er 128 (242)
-|+++++.++++.+-.+ -| +.+...|| ++++-+|||-|+.+..
T Consensus 396 ~s~~E~~~a~~~v~~~~~~l-~~~G~~~~~~~~vg~MIE~P~a~~~ 440 (572)
T 2wqd_A 396 ATINEFREAKAILLEEKENL-KNEGHDISDDIELGIMVEIPATAAL 440 (572)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-HHHTCCCCSCCEEEEEECCHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHH-HhcCCCCCCCcEEEEEEccHHHHHH
Confidence 36677666655543222 23 45667787 6999999999999876
No 8
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.34 E-value=64 Score=22.24 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=44.1
Q ss_pred cceEEEEEecCc--HHHHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Q 026164 112 SEVKLTIMIEDP--REVERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEMVQW 174 (242)
Q Consensus 112 ~EVKLTImIEDP--R~~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm~~W 174 (242)
..+++.+..... ....+-...|+.+ ...++.+++..++..+-+|+.+-.....+.|.+++..=
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (153)
T 3cz5_A 78 GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIAEERVEG 144 (153)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEECHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCChHHHHHHHhhcCCC
Confidence 456666655443 3333333466654 34578899999999999999888888888888877653
No 9
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=45.90 E-value=69 Score=22.05 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred cceEEEEEecCcHH--HHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 112 SEVKLTIMIEDPRE--VERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 112 ~EVKLTImIEDPR~--~Errr~lGIED--~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
..+++.++-..... ..+-..+|..+ ....+.+++.+++..+-.|+..-....++.|.+++
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~ 151 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEI 151 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---------------
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeeeCHHHHHHHhhcc
Confidence 45666666554443 33334456654 34678999999999999998877777777666554
No 10
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=45.30 E-value=4.5 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=11.4
Q ss_pred hCCC-CCCCCChHHHHHHHHHhh
Q 026164 132 LGIE-DSNAPTRDDLAEALEQVN 153 (242)
Q Consensus 132 lGIE-D~~g~srddla~AL~eV~ 153 (242)
+||+ .+. |-||+.+++..+.
T Consensus 151 ~G~~~~P~--Twdel~~~~~~l~ 171 (414)
T 3quf_A 151 AGYDKFPK--TWDEFIEMGKKIN 171 (414)
T ss_dssp TTCSSCCS--BHHHHHHHHHHHH
T ss_pred cCCCCCCC--CHHHHHHHHHHHH
Confidence 4665 332 6666666666554
No 11
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=44.21 E-value=6.4 Score=26.28 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=33.9
Q ss_pred hhccccccceEEEEEecCcHHHHHHHhhCC---CCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 105 KNRDMLFSEVKLTIMIEDPREVERRRLLGI---EDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 105 ~~RDMsF~EVKLTImIEDPR~~Errr~lGI---ED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
.+--++|.|..-.+........+=|+.... ....-+|.+|+..+|..+..+..+-....++.+.+++
T Consensus 20 ~~g~i~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 20 AADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp STTCCCHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 444466666543222211222232334433 3333489999999999986522333334455555443
No 12
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=41.33 E-value=20 Score=23.82 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCCCchHHH
Q 026164 84 EATPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVA 163 (242)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGriP~dR~A 163 (242)
..+++++.....|...|+.+++.+.||-.++- +.+|| |+ .++-.+..|+.+-+...
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~glsq~~lA--------------~~~gi------s~----~~is~~e~g~~~~~~~~ 61 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESVA--------------DKMGM------GQ----SGVGALFNGINALNAYN 61 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHH--------------HHHTS------CH----HHHHHHHTTSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------------HHHCc------CH----HHHHHHHcCCCCCCHHH
Confidence 46788888999999999999999888855431 23454 43 35666777876555666
Q ss_pred HHHHHHHH
Q 026164 164 LRMLAEEM 171 (242)
Q Consensus 164 L~~L~eEm 171 (242)
+..|++-+
T Consensus 62 l~~ia~~l 69 (92)
T 1lmb_3 62 AALLAKIL 69 (92)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 13
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=39.56 E-value=6.4 Score=26.34 Aligned_cols=67 Identities=4% Similarity=0.052 Sum_probs=34.5
Q ss_pred hhccccccceEEEEEecCcHHHHHHHh---hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 105 KNRDMLFSEVKLTIMIEDPREVERRRL---LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 105 ~~RDMsF~EVKLTImIEDPR~~Errr~---lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
.+--++|.|..-.+.+......+=++. +......-+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 21 ~~g~i~~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp STTCCCHHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 444566666543332222222333334 3433344589999999998875422333334455555544
No 14
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=39.27 E-value=21 Score=26.59 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCC
Q 026164 90 LENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIE 135 (242)
Q Consensus 90 l~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIE 135 (242)
=-+|..++.+|+-|.......|.+|.++ +||...++ +|+.
T Consensus 40 C~~C~~a~~~L~~l~~e~~i~~~~vDId---~d~~l~~~---ygv~ 79 (107)
T 2fgx_A 40 CHLCEEMIASLRVLQKKSWFELEVINID---GNEHLTRL---YNDR 79 (107)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCEEEETT---TCHHHHHH---STTS
T ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHH---hCCC
Confidence 4589999999999888778888776654 67876654 6763
No 15
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=39.11 E-value=9.5 Score=29.15 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCccccCCc
Q 026164 20 DNQINQHHPL 29 (242)
Q Consensus 20 ~~~~~~hh~~ 29 (242)
++.+||||++
T Consensus 3 ~~~~~~~~~~ 12 (228)
T 2qu8_A 3 SSHHHHHHSS 12 (228)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3445556654
No 16
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=39.08 E-value=6.4 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCCCccccCCcccc
Q 026164 19 GDNQINQHHPLFAA 32 (242)
Q Consensus 19 s~~~~~~hh~~~~~ 32 (242)
+++.+||||+.|+-
T Consensus 2 ~~~~~~~~~~~~~~ 15 (287)
T 3rku_A 2 GSSHHHHHHSSFLV 15 (287)
T ss_dssp --------------
T ss_pred CCccccccccceee
Confidence 35667888888764
No 17
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=37.57 E-value=5.7 Score=30.29 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhccc
Q 026164 84 EATPEDLENIAQVKRVLELLRKNRDM 109 (242)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RDM 109 (242)
.||-. ++-|++...|.+-.|++.||
T Consensus 58 ~PsL~-~kIAk~fg~w~~~~~~~~~~ 82 (83)
T 2l1p_A 58 YANVS-AAKCQEFGRWYKHFKKTKDM 82 (83)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHCCSCC
T ss_pred CCCch-HHHHHHHHHHHHHHHHhhhc
Confidence 46666 99999999999999999998
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=37.23 E-value=7.2 Score=30.62 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCccccCCcccccccc
Q 026164 19 GDNQINQHHPLFAATSWR 36 (242)
Q Consensus 19 s~~~~~~hh~~~~~~~~~ 36 (242)
+|+.+||||+++-..+|+
T Consensus 2 ~~~~~~~~~~~l~~isl~ 19 (218)
T 1z6g_A 2 GSSHHHHHHSSGLVPRGS 19 (218)
T ss_dssp ------------------
T ss_pred CCcccccccccccCCcee
Confidence 356678888888777775
No 19
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=36.56 E-value=15 Score=27.22 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=6.1
Q ss_pred ccceeccCCCC
Q 026164 51 RVVALVGKGDT 61 (242)
Q Consensus 51 ~~~~~vgked~ 61 (242)
..+..+|....
T Consensus 30 ~ki~v~G~~~v 40 (192)
T 2b6h_A 30 MRILMVGLDAA 40 (192)
T ss_dssp EEEEEEESTTS
T ss_pred cEEEEECCCCC
Confidence 44666666443
No 20
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=36.09 E-value=25 Score=25.90 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHhhcCCCCchHH
Q 026164 139 APTRDDLAEALEQVNEGKVPKNRV 162 (242)
Q Consensus 139 g~srddla~AL~eV~eGriP~dR~ 162 (242)
.-|+|+|.+|++.|.+|+..--++
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~A 36 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKA 36 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHHH
Confidence 368999999999999998544443
No 21
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=34.08 E-value=7.8 Score=25.92 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=23.3
Q ss_pred hCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 132 LGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 132 lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
+.......+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 50 IDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp HCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3433334489999999998875422333344455555544
No 22
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=32.15 E-value=9.6 Score=30.62 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026164 20 DNQINQHHPLF 30 (242)
Q Consensus 20 ~~~~~~hh~~~ 30 (242)
|+.+||||++-
T Consensus 3 ~~~~~~~~~~~ 13 (330)
T 2qry_A 3 SSHHHHHHSSG 13 (330)
T ss_dssp -----------
T ss_pred CcccccccccC
Confidence 45566666653
No 23
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=31.23 E-value=1.9e+02 Score=25.86 Aligned_cols=88 Identities=15% Similarity=0.291 Sum_probs=52.6
Q ss_pred cccccccchhhhcccccCccceeccCCCCcceeccccccccccchhhhhhcCCChHhHHH-HHHHHHHHHHHHhhccccc
Q 026164 33 TSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQENDLQDQDQEDEEEEEEATPEDLEN-IAQVKRVLELLRKNRDMLF 111 (242)
Q Consensus 33 ~~~~~s~l~~~~~rr~s~~~~~~vgked~~l~V~~~~~~~~~d~ed~~e~~e~sPeDl~~-v~eIkrvL~lLk~~RDMsF 111 (242)
++|.++...+-...++.++...+||-.... .. ..|++ +.+++.+-++|++. .-|
T Consensus 36 ~~~~~~~~~~~~s~~~grr~ALlIGIn~Y~----~~-------------------~~L~g~vnDA~~m~~~L~~~--~Gf 90 (350)
T 4f6o_A 36 QTIQGTDQPYQYSQCTGRRKALIIGINYIG----SK-------------------NQLRGCINDAHNIFNFLTNG--YGY 90 (350)
T ss_dssp BCCTTSCCCBCCCCCCSCEEEEEEECCCTT----ST-------------------TCCSSHHHHHHHHHHHHHHH--SCC
T ss_pred cccCCCCCccccCCCCCCEEEEEEEeCCCC----CC-------------------CCCCCHHHHHHHHHHHHHHh--cCC
Confidence 555444444444566667788999986432 00 12333 34566666667654 457
Q ss_pred cceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcC
Q 026164 112 SEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEG 155 (242)
Q Consensus 112 ~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eG 155 (242)
.+..+++.+.+... ...-+||+.|..||..+-++
T Consensus 91 ~~~~I~lLtd~~~~----------~~~~pTr~nI~~aL~~L~~~ 124 (350)
T 4f6o_A 91 SSDDIVILTDDQND----------LVRVPTRANMIRAMQWLVKD 124 (350)
T ss_dssp CGGGEEEEETTSSC----------GGGSCCHHHHHHHHHHHHTT
T ss_pred Cccceeeecccccc----------cccCCCHHHHHHHHHHHHHh
Confidence 76666666665321 12348999999999987655
No 24
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=31.13 E-value=20 Score=23.25 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhccccccceEEEE
Q 026164 91 ENIAQVKRVLELLRKNRDMLFSEVKLTI 118 (242)
Q Consensus 91 ~~v~eIkrvL~lLk~~RDMsF~EVKLTI 118 (242)
-+|..++.+|+-|-+.....|..+++.+
T Consensus 13 ~~C~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 13 PVCVSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp HHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 3799999999877766666777776654
No 25
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=30.69 E-value=11 Score=33.44 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCccccCCcc
Q 026164 19 GDNQINQHHPLF 30 (242)
Q Consensus 19 s~~~~~~hh~~~ 30 (242)
+|+.+|||||+.
T Consensus 2 ~~~~~~~~~~s~ 13 (368)
T 2q58_A 2 GSSHHHHHHSSG 13 (368)
T ss_dssp ------------
T ss_pred CCccccccccCC
Confidence 456677777764
No 26
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=29.24 E-value=33 Score=28.63 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.0
Q ss_pred ceEEEEEecCcHHHHHHH-hhCCCCCCCC--ChHHHHHHH
Q 026164 113 EVKLTIMIEDPREVERRR-LLGIEDSNAP--TRDDLAEAL 149 (242)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~--srddla~AL 149 (242)
++++.+|||.|..+++=. ++..+--|++ -+.||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL~~~l 184 (267)
T 2vws_A 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL 184 (267)
T ss_dssp HCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHHHHHh
Confidence 589999999999998733 3333334443 478888876
No 27
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=28.14 E-value=17 Score=24.29 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=23.7
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
.+.......+|.+|+..+|..+..+..+-...-++.+.+++
T Consensus 50 ~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 50 VIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp HHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 34443344589999999999885322333334445554443
No 28
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=26.94 E-value=18 Score=30.40 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHh
Q 026164 88 EDLENIAQVKRVLELLRK 105 (242)
Q Consensus 88 eDl~~v~eIkrvL~lLk~ 105 (242)
.|.+.+..+.+.|..|++
T Consensus 44 ~~~~~l~~la~~Ia~l~~ 61 (286)
T 3d40_A 44 LDDDAVTRFARNFARLAE 61 (286)
T ss_dssp BCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455666666666666654
No 29
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=26.76 E-value=14 Score=28.25 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026164 20 DNQINQHHPLF 30 (242)
Q Consensus 20 ~~~~~~hh~~~ 30 (242)
++.+||||++-
T Consensus 3 ~~~~~~~~~~~ 13 (272)
T 2pvu_A 3 SSHHHHHHSSG 13 (272)
T ss_dssp -----------
T ss_pred ccccccccccC
Confidence 45566777653
No 30
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A
Probab=25.97 E-value=79 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.0
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHH
Q 026164 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (242)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (242)
+|+|++.+.+++..++-. ..+.-+-+|+++|||-+|..-+
T Consensus 395 speEV~~~~~lf~~~E~~---lGlp~gTIKi~vLIET~ra~~n 434 (731)
T 1p7t_A 395 GPQEVAFANKLFTRIETM---LGMAPNTLKMGIMDEERRTSLN 434 (731)
T ss_dssp SHHHHHHHHHHHHHHHHH---TTCCTTCEEEEEEECSHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHh---hCCCCCceEEEEEECCHHHHHh
Confidence 788888887777665543 4555678999999999987643
No 31
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=25.77 E-value=1.4e+02 Score=27.49 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCC--CCchH----HHHHHHHHHH
Q 026164 98 RVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGK--VPKNR----VALRMLAEEM 171 (242)
Q Consensus 98 rvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGr--iP~dR----~AL~~L~eEm 171 (242)
.+|+-+|.-=+.--+++-++|+||+--. -....+...+++.+.+.+|--.+ .|.+- ..|+.-. --
T Consensus 106 ~CL~~IK~WsdahPsh~PViI~LE~K~t--------~~~~~g~~p~~lDaeI~~vFGd~L~tPddvrG~~~TL~eAV-la 176 (339)
T 3h4x_A 106 GCLSDMRAWHDAHPGHRPILLKIEMKDG--------FNAKGGRGPAEFDALIRQKLGDAVYGPGDLTGGHATADEAV-RA 176 (339)
T ss_dssp HHHHHHHHHHHHSTTCCCEEEEEEETTC--------CBGGGTBSHHHHHHHHHHHHGGGBCCHHHHHTTSSSHHHHH-HH
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecccC--------cccccCcCHHHHHHHHHHHhccceEcchhhcccccCHHHHH-hc
Confidence 3344444444456789999999998532 11112233466666666654332 24331 1122100 12
Q ss_pred hcCCCccccc
Q 026164 172 VQWPNLEVEA 181 (242)
Q Consensus 172 ~~WP~Le~e~ 181 (242)
.+||.++...
T Consensus 177 ~GWPSl~slR 186 (339)
T 3h4x_A 177 GGWPSRADLA 186 (339)
T ss_dssp HCCCBTGGGT
T ss_pred CCCCChHHhC
Confidence 7899988653
No 32
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=25.64 E-value=23 Score=31.01 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026164 20 DNQINQHHPLF 30 (242)
Q Consensus 20 ~~~~~~hh~~~ 30 (242)
|+.+||||++-
T Consensus 3 ~~~~~~~~~~~ 13 (456)
T 4dcu_A 3 SSHHHHHHSSG 13 (456)
T ss_dssp -----------
T ss_pred CccccccccCC
Confidence 45566666653
No 33
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=25.61 E-value=80 Score=30.12 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=29.2
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHH
Q 026164 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREV 126 (242)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~ 126 (242)
+|+|.+.+.+++..++- ...+.-+-+|+++|||-++.+
T Consensus 214 s~~Ev~~~~~lf~~~E~---~lGlp~gtIki~vlIET~~a~ 251 (528)
T 3cux_A 214 SYLEARLWNDVFVFAQK---YIGIPNGTIKATVLLETIHAS 251 (528)
T ss_dssp SHHHHHHHHHHHHHHHH---HHTCCTTCCEEEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhCCCCCceEEEEEeCCHHHH
Confidence 78888888777766554 334556789999999999976
No 34
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=25.55 E-value=80 Score=31.51 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=48.7
Q ss_pred CChHhHHHHHH-HHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhh---------CCCCC----CCCChHHHHHHHH
Q 026164 85 ATPEDLENIAQ-VKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLL---------GIEDS----NAPTRDDLAEALE 150 (242)
Q Consensus 85 ~sPeDl~~v~e-IkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~l---------GIED~----~g~srddla~AL~ 150 (242)
.++++++.|++ |.++.+.+...+...+ .+++-||||=|+.+=.=..+ |=.|. =|++|++-...|.
T Consensus 734 ~~~~E~~~~~~~v~~~~~~~~~~~g~~~-~~~vG~MiEvPsaal~ad~~a~~~DFfSiGTNDLTQ~tlg~DRd~~~~~~~ 812 (913)
T 2x0s_A 734 GKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVTADSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLR 812 (913)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECSHHHHHTHHHHGGGCSEEEECTTHHHHHHHTCCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCeEEEEEeHHHHHHHHHHHHHHCCEEEECHhHHHHHHHHHhcCCchhhhh
Confidence 46778888775 4566666666665554 47899999999987432221 11111 1667776332332
Q ss_pred Hh-------hcCCCCchHHHHHHHHH
Q 026164 151 QV-------NEGKVPKNRVALRMLAE 169 (242)
Q Consensus 151 eV-------~eGriP~dR~AL~~L~e 169 (242)
.. .+---|-+..|+..|.+
T Consensus 813 ~y~~~~~~~~dp~~~~~~~~v~~li~ 838 (913)
T 2x0s_A 813 HYGNLGIYAQDPFQSIDQEGIGELVR 838 (913)
T ss_dssp HHHHHTSSSSCTTTSCCTTTHHHHHH
T ss_pred hhhhccccccCCCchhHHHHHHHHHH
Confidence 21 23345666666666654
No 35
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=25.49 E-value=60 Score=21.52 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.9
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026164 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (242)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (242)
++++|||| +|...+.+-+.++-+.|
T Consensus 10 ~dA~~Eela~Y~~~LrhYiNlvTRqR 35 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLNVVTRHR 35 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 36899998 68899999999888776
No 36
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.89 E-value=18 Score=30.33 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCccccCCcccc
Q 026164 19 GDNQINQHHPLFAA 32 (242)
Q Consensus 19 s~~~~~~hh~~~~~ 32 (242)
+|+.+||||++-+|
T Consensus 2 ~~~~~~~~~~~~~~ 15 (412)
T 4fe7_A 2 GSSHHHHHHSSGLV 15 (412)
T ss_dssp --------------
T ss_pred CCcccccccccCcC
Confidence 35567777777654
No 37
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=24.80 E-value=85 Score=31.83 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=31.1
Q ss_pred CChHhHHHHHHH-HHHHHHHHhhccccccceEEEEEecCcHHHHH
Q 026164 85 ATPEDLENIAQV-KRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (242)
Q Consensus 85 ~sPeDl~~v~eI-krvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (242)
.++++++.++++ .++.+-|.+.....| .+++-+|||=||.+=.
T Consensus 734 ~t~~E~~~~~~~i~~~~~el~~e~g~~~-~~~vG~MiEvPsaal~ 777 (913)
T 1h6z_A 734 GKKEELSLIREEVVKTAEAVITKSGKRV-HYTVGTMIEVPRAAVT 777 (913)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCSCC-CCEEEEEECSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCC-CceEEEEecchHHHHH
Confidence 467788887765 355555655555666 5999999999999654
No 38
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.68 E-value=20 Score=26.88 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=1.6
Q ss_pred CCCCccccCCcccc
Q 026164 19 GDNQINQHHPLFAA 32 (242)
Q Consensus 19 s~~~~~~hh~~~~~ 32 (242)
+|+.+||||+++.+
T Consensus 2 ~~~~~~~~~~~~~~ 15 (230)
T 2iai_A 2 GSSHHHHHHSSGRE 15 (230)
T ss_dssp -----------CCC
T ss_pred CCccccccccchhh
Confidence 34556777777654
No 39
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=24.58 E-value=41 Score=27.74 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=26.2
Q ss_pred ceEEEEEecCcHHHHHH-HhhCCCCCCCC--ChHHHHHHH
Q 026164 113 EVKLTIMIEDPREVERR-RLLGIEDSNAP--TRDDLAEAL 149 (242)
Q Consensus 113 EVKLTImIEDPR~~Err-r~lGIED~~g~--srddla~AL 149 (242)
++++.+|||.|..+++= .++..+--+++ -..||...|
T Consensus 145 ~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~~~l 184 (256)
T 1dxe_A 145 NITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_dssp SCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred ccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHh
Confidence 68999999999999873 23333334443 478888877
No 40
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.54 E-value=16 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=3.6
Q ss_pred CCCccccCCccccc
Q 026164 20 DNQINQHHPLFAAT 33 (242)
Q Consensus 20 ~~~~~~hh~~~~~~ 33 (242)
++.+||||+.|+.+
T Consensus 2 ~~~~~~~~~~~~ls 15 (66)
T 2acm_A 2 SSHHHHHHSFFFLS 15 (66)
T ss_dssp --------CEEEEE
T ss_pred CCcccccchhHHHH
Confidence 44566777776553
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=24.44 E-value=23 Score=26.11 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred CccccCCcc
Q 026164 22 QINQHHPLF 30 (242)
Q Consensus 22 ~~~~hh~~~ 30 (242)
.+||||++.
T Consensus 5 ~~~~~~~~~ 13 (199)
T 2p5s_A 5 HHHHHHSSG 13 (199)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 344444443
No 42
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=24.37 E-value=16 Score=29.30 Aligned_cols=22 Identities=14% Similarity=0.082 Sum_probs=3.9
Q ss_pred CCCccccCCcccc-----cccccccch
Q 026164 20 DNQINQHHPLFAA-----TSWRASKLC 41 (242)
Q Consensus 20 ~~~~~~hh~~~~~-----~~~~~s~l~ 41 (242)
++.+||||+.-+- ++|+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~assi~ 29 (192)
T 2w1s_A 3 SSHHHHHHSSGLVPRGSHMASNPSLIR 29 (192)
T ss_dssp ---------------------CCEEEE
T ss_pred cccccccccccccccCccccccceEEe
Confidence 4556677765332 677766665
No 43
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=23.41 E-value=36 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=25.5
Q ss_pred ceEEEEEecCcHHHHHHH-hhCCCCCCCC--ChHHHHHHH
Q 026164 113 EVKLTIMIEDPREVERRR-LLGIEDSNAP--TRDDLAEAL 149 (242)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~--srddla~AL 149 (242)
++++.+|||.|..+++=. ++..+--|++ -+.||...|
T Consensus 166 ~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DLs~~l 205 (287)
T 2v5j_A 166 QMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADM 205 (287)
T ss_dssp HCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHHHHT
T ss_pred CcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHHHHHh
Confidence 589999999999998733 2333233333 478888776
No 44
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.26 E-value=17 Score=24.29 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=23.7
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Q 026164 131 LLGIEDSNAPTRDDLAEALEQVNEGKVPKNRVALRMLAEEM 171 (242)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~eGriP~dR~AL~~L~eEm 171 (242)
.+......-+|.+|+..+|..+..+..+-....++.+.+++
T Consensus 50 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 50 ILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 44444445589999988888775422333334445554443
No 45
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=22.97 E-value=29 Score=26.71 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCCccccCCcccc-cccccccchhhhcccccCccceeccCCCCcceecc
Q 026164 20 DNQINQHHPLFAA-TSWRASKLCLCCSRRSSQRVVALVGKGDTDLRVAQ 67 (242)
Q Consensus 20 ~~~~~~hh~~~~~-~~~~~s~l~~~~~rr~s~~~~~~vgked~~l~V~~ 67 (242)
|+.+||||++--- .-|..-+.-+ |+++.+...-|-|-|.+=.|-+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~MKVMI---R~~~~GLs~YVpKKDLEE~VVs 48 (87)
T 2jn4_A 3 SSHHHHHHSSGRENLYFQGMKVMI---RKTATGHSAYVAKKDLEELIVE 48 (87)
T ss_dssp -------------------CCEEE---EECSSCEEEEETTTTEEEEEEE
T ss_pred cccccccccccccceeecCCeEEE---EeCCCceEEEEeCCcchhheee
Confidence 4456666665322 2333233333 4444568888999987776554
No 46
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=22.89 E-value=73 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.7
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026164 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (242)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (242)
+.++|||| +|...+.+-+.++-+.|
T Consensus 10 ~~a~pEela~Y~~~Lr~YinlvTRqR 35 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYINLITRQR 35 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 46888888 58899999999888876
No 47
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.77 E-value=54 Score=27.32 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhcCCCccccccccCCCcccchhcccCCCCHHHHHhhhccCccccc-ccccCCCCCCCCCC
Q 026164 160 NRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVTDTGIDPEMAAKRLNIDWDSAA-EIEDAGGGDDPEVP 230 (242)
Q Consensus 160 dR~AL~~L~eEm~~WP~Le~e~~k~kp~ks~YakatdTGidp~~AAkRlnidWDsAA-eIe~~~~dde~~vp 230 (242)
++.++.-+.+.|..-=-++.. +....| ..|+.|..-....+ --.-|..|. +++..+..||-.||
T Consensus 179 sksTv~r~L~~Le~~GlV~r~-----~r~~~~-~LT~~G~~l~~~~~-~~~~w~~aq~~~~~~~~~~~~~~~ 243 (244)
T 2wte_A 179 SEKTLINKIAELKKFGILTQK-----GKDRKV-ELNELGLNVIKLNK-SVIESSKSSEELVKENKGKEVNIP 243 (244)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE-----TTTTEE-EECHHHHHHHHHTC-------------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEe-----CCccEE-EECHHHHHHHHHHh-cccccHHHHHHHHhhcCCcccCCC
Confidence 344455555555554444432 111222 36666654333322 234465553 34445556666665
No 48
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=22.63 E-value=18 Score=29.17 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred CCccccCCc
Q 026164 21 NQINQHHPL 29 (242)
Q Consensus 21 ~~~~~hh~~ 29 (242)
+.+||||++
T Consensus 4 ~~~~~~~~~ 12 (343)
T 2v84_A 4 SHHHHHHSS 12 (343)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 345556654
No 49
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=22.44 E-value=54 Score=21.75 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=20.5
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026164 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (242)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (242)
++++|||| +|...+.+-+.++-+.|
T Consensus 10 ~dA~pEela~Y~~~Lr~YiNlvTRqR 35 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYINMLTRPR 35 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 36889997 68889999998887766
No 50
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=22.30 E-value=19 Score=29.28 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCCCccccCCccccc
Q 026164 19 GDNQINQHHPLFAAT 33 (242)
Q Consensus 19 s~~~~~~hh~~~~~~ 33 (242)
+|+.+||||+...+.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (341)
T 3un6_A 2 GSSHHHHHHENLYFQ 16 (341)
T ss_dssp ---------------
T ss_pred CCccccccchhHHHh
Confidence 355677888876553
No 51
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=22.26 E-value=1.8e+02 Score=23.73 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=51.3
Q ss_pred CChHhHHH-HHHH-----HHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhhcCCC-
Q 026164 85 ATPEDLEN-IAQV-----KRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVNEGKV- 157 (242)
Q Consensus 85 ~sPeDl~~-v~eI-----krvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~eGri- 157 (242)
.+|+-|-. +... -+.|+.|++++++|-.|+ + +.+|| || .++..++.|+.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~el-----------A---~~LGv------sr----~tis~yE~G~r~ 129 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTA-----------A---EALGI------SR----RMVSYYRTAHKI 129 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHH-----------H---HHHTS------CH----HHHHHHHTTSSC
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHH-----------H---HHhCC------CH----HHHHHHHcCCCC
Confidence 77777743 2222 135888899999888776 1 35665 43 46677888976
Q ss_pred CchHHHHHHHHHHHhcCCCccccccccCCCcccchhcc
Q 026164 158 PKNRVALRMLAEEMVQWPNLEVEATKQKPSKSLYAKVT 195 (242)
Q Consensus 158 P~dR~AL~~L~eEm~~WP~Le~e~~k~kp~ks~Yakat 195 (242)
|.--..|+|++-|-.+=+. .-.|++.| --|||-.
T Consensus 130 iP~~~~lac~~~~~~~~~~--~~~~~~~~--~~~~~~~ 163 (170)
T 2auw_A 130 IPRTIWLACLGWEATRPET--KTLPRTLP--AAYAKGV 163 (170)
T ss_dssp CCHHHHHHHHHHHHTCSCC--SSCCSSCC---------
T ss_pred CCHHHHHHHHHHHhhcccc--cCCcccCh--HHHhccc
Confidence 5666799999977776644 34688888 5688743
No 52
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=21.67 E-value=88 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=26.3
Q ss_pred ceEEEEEecCcHHHHHHH-hhCCCCCCCCC--hHHHHHHH
Q 026164 113 EVKLTIMIEDPREVERRR-LLGIEDSNAPT--RDDLAEAL 149 (242)
Q Consensus 113 EVKLTImIEDPR~~Errr-~lGIED~~g~s--rddla~AL 149 (242)
++++.+|||.|..+++=. ++..+--++++ ..||...|
T Consensus 143 ~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG~~DL~~~l 182 (261)
T 3qz6_A 143 EIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLSNDL 182 (261)
T ss_dssp TCEEEEEECCHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCCCCEEEECHHHHHHHh
Confidence 689999999999998733 34333344443 68888866
No 53
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=21.55 E-value=16 Score=24.35 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=19.5
Q ss_pred CCChHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Q 026164 139 APTRDDLAEALEQVNE-GKVPKNRVALRMLAEEM 171 (242)
Q Consensus 139 g~srddla~AL~eV~e-GriP~dR~AL~~L~eEm 171 (242)
-+|.+|+..+|..+.. |.-+. ..-++.+.+++
T Consensus 57 ~I~~~el~~~l~~~~~~g~~~~-~~~~~~~~~~~ 89 (108)
T 1rro_A 57 YLDGDELKYFLQKFQSDARELT-ESETKSLMDAA 89 (108)
T ss_dssp EECTHHHHTGGGGTCTTSCCCC-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhccCCCC-HHHHHHHHHHh
Confidence 4899999999888754 33333 33344444443
No 54
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=21.30 E-value=1e+02 Score=26.23 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHHHhhCCCCCCCCChHHHHHHHHHhh
Q 026164 92 NIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERRRLLGIEDSNAPTRDDLAEALEQVN 153 (242)
Q Consensus 92 ~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Errr~lGIED~~g~srddla~AL~eV~ 153 (242)
.+.||.++|+-|. ..||+|+|. ...||-.=... .+.+++|++-+.|+...
T Consensus 126 h~~~~l~~~~~~~-~~~~~~~~~----------I~~RRSiR~F~-~~~V~~e~l~~ileaA~ 175 (322)
T 4eo3_A 126 HVQEVKEALDRLI-EEDLSLNKH----------IEWRRARRALK-KDRVPREELELLIKAAH 175 (322)
T ss_dssp HHHHHHHHHHHHH-HHHTSCCHH----------HHHCCCCCCBC-CCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhc-hhhhHHHHH----------HHhhhccCCcC-ccccCHHHHHHHHHHHH
Confidence 6889999999997 479999984 34454333444 46799999988887653
No 55
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=21.04 E-value=27 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCccccCCcccc--cccccccchhhhcccccCccceeccCCCCcce
Q 026164 21 NQINQHHPLFAA--TSWRASKLCLCCSRRSSQRVVALVGKGDTDLR 64 (242)
Q Consensus 21 ~~~~~hh~~~~~--~~~~~s~l~~~~~rr~s~~~~~~vgked~~l~ 64 (242)
+.+||||.-... ..|-..-..||..|.+.-...+.||..+.+|-
T Consensus 6 ~~~~~~~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~ 51 (123)
T 1kkx_A 6 SHHHHHHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLF 51 (123)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTT
T ss_pred cccccccCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHH
Confidence 344555555443 45544445677777655446788998888876
No 56
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=20.89 E-value=91 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=24.4
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHH
Q 026164 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVER 128 (242)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Er 128 (242)
|++|++.+. ++|..+.+..... ..++|.+|||.|+.+++
T Consensus 121 s~~dv~~~~---~~l~~~e~~~G~~-~~~~l~~~IET~~gv~~ 159 (339)
T 3r4i_A 121 HVHDAAEMV---AFIEATRRELGIA-QPVPVQLLVETHGALTR 159 (339)
T ss_dssp CHHHHHHHH---HHHHHHHHHTTCS-SCCCEEEEECSHHHHHT
T ss_pred CHHHHHHHH---HHHHHHHHHcCCC-CCcEEEEEeccHHHHHh
Confidence 555555444 4444443332222 46899999999999986
No 57
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=20.89 E-value=1.3e+02 Score=23.35 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHhhccccccceEE
Q 026164 88 EDLENIAQVKRVLELLRKNRDMLFSEVKL 116 (242)
Q Consensus 88 eDl~~v~eIkrvL~lLk~~RDMsF~EVKL 116 (242)
=+...+.+.+.-|.-+++++--.|..|..
T Consensus 65 ~~~~~l~~~~~~I~~~y~~~GY~~a~v~~ 93 (189)
T 3q6b_A 65 YNGTKVTKMEDDIKKLLGRYGYAYPRVQS 93 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred eCHHHHHHHHHHHHHHHHhCCCceEEeeE
Confidence 34455566667777777787777766655
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=20.79 E-value=21 Score=32.33 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCccccCCcccccccc
Q 026164 19 GDNQINQHHPLFAATSWR 36 (242)
Q Consensus 19 s~~~~~~hh~~~~~~~~~ 36 (242)
+++.+||||+.-+-.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (458)
T 3nmz_A 2 GSSHHHHHHSSGLVPRGS 19 (458)
T ss_dssp ------------------
T ss_pred CCcccccccccccCCCCC
Confidence 345667777765554454
No 59
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.79 E-value=1.9e+02 Score=19.15 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=30.4
Q ss_pred ccceEEEEEecCcHH--HHHHHhhCCCC--CCCCChHHHHHHHHHhhcCCCCc
Q 026164 111 FSEVKLTIMIEDPRE--VERRRLLGIED--SNAPTRDDLAEALEQVNEGKVPK 159 (242)
Q Consensus 111 F~EVKLTImIEDPR~--~Errr~lGIED--~~g~srddla~AL~eV~eGriP~ 159 (242)
+..+++.++...... ..+-...|+.+ ...++.+++..++..+..|..+.
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEGH 131 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchhh
Confidence 566777776655443 44434457654 45679999999999998887654
No 60
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=20.64 E-value=21 Score=27.84 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=19.2
Q ss_pred CCChHhHHHHHHHHHHHHHHHhhcc
Q 026164 84 EATPEDLENIAQVKRVLELLRKNRD 108 (242)
Q Consensus 84 e~sPeDl~~v~eIkrvL~lLk~~RD 108 (242)
-.+|+....+.+|...+...++..+
T Consensus 72 ~~~~~~~~~l~~i~~~~~~Y~~~f~ 96 (258)
T 2yfa_A 72 FKSPENVKLLGELGDTISAYKLSLN 96 (258)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcccHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888887776543
No 61
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=20.61 E-value=91 Score=27.14 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=25.3
Q ss_pred ChHhHHHHHHHHHHHHHHHhhccccccceEEEEEecCcHHHHHH
Q 026164 86 TPEDLENIAQVKRVLELLRKNRDMLFSEVKLTIMIEDPREVERR 129 (242)
Q Consensus 86 sPeDl~~v~eIkrvL~lLk~~RDMsF~EVKLTImIEDPR~~Err 129 (242)
|++|++.+.+ .|+.+.+..... ..++|.+|||.|+.+++=
T Consensus 122 sa~dv~~~~~---~l~~~e~~~G~~-~~i~l~~~IET~~gv~~~ 161 (332)
T 3qqw_A 122 NSGQVAEVIR---YIGDVAKRAGLD-KPVPVHVLIETHGALRDV 161 (332)
T ss_dssp SHHHHHHHHH---HHHHHHHHTTCS-SCCCEEEEECSHHHHHTH
T ss_pred CHHHHHHHHH---HHHHHHHhcCCC-CCeEEEEEecCHHHHHHH
Confidence 5666555444 444443332222 468999999999999873
No 62
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=20.54 E-value=21 Score=27.12 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCccccCCcc
Q 026164 20 DNQINQHHPLF 30 (242)
Q Consensus 20 ~~~~~~hh~~~ 30 (242)
++.+|||||.-
T Consensus 3 ~~~~~~~~~~~ 13 (201)
T 2ew1_A 3 SSHHHHHHSSG 13 (201)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 45567777653
No 63
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=20.43 E-value=40 Score=22.38 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred hhCCCCCCCCChHHHHHHHHHhhc-CCCCchHHHHHHHHHHH
Q 026164 131 LLGIEDSNAPTRDDLAEALEQVNE-GKVPKNRVALRMLAEEM 171 (242)
Q Consensus 131 ~lGIED~~g~srddla~AL~eV~e-GriP~dR~AL~~L~eEm 171 (242)
.+.-....-+|.+|+..+|..+.. |.-+.+. -++.+.+++
T Consensus 49 ~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~-~~~~~~~~~ 89 (109)
T 5pal_A 49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDT-ETKALLAAG 89 (109)
T ss_dssp HHCTTCSSEECHHHHHTHHHHHCTTCCCCCHH-HHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHh
Confidence 344444445899999999988743 4333333 344444443
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=20.30 E-value=22 Score=26.10 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhh
Q 026164 93 IAQVKRVLELLRKN 106 (242)
Q Consensus 93 v~eIkrvL~lLk~~ 106 (242)
...++.|++.+++.
T Consensus 111 ~~~~~~~~~~i~~~ 124 (192)
T 2fg5_A 111 FYTLKKWVKELKEH 124 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34455666666554
No 65
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=20.18 E-value=90 Score=21.14 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.6
Q ss_pred cCCChHhH-HHHHHHHHHHHHHHhhc
Q 026164 83 EEATPEDL-ENIAQVKRVLELLRKNR 107 (242)
Q Consensus 83 ~e~sPeDl-~~v~eIkrvL~lLk~~R 107 (242)
+.+||||| +|.+.+.+-+.++-+.|
T Consensus 14 ~~aspEela~Y~~~Lr~YinlvTR~R 39 (41)
T 2l60_A 14 KKLSPEELNRYYASLRHYLNLVTRQR 39 (41)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 47899998 58888888888887766
No 66
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=20.09 E-value=2.1e+02 Score=21.30 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcc--ccccceEEEEEe-----------cCcHHHHHHHhhCCCCCC---CCChHHHHHHHHHhhc--CC
Q 026164 95 QVKRVLELLRKNRD--MLFSEVKLTIMI-----------EDPREVERRRLLGIEDSN---APTRDDLAEALEQVNE--GK 156 (242)
Q Consensus 95 eIkrvL~lLk~~RD--MsF~EVKLTImI-----------EDPR~~Errr~lGIED~~---g~srddla~AL~eV~e--Gr 156 (242)
++.+++..+-.+.| ++|.|..-.+.. ......+-++.+..=|.+ .+|.+|+..+|..+.. |.
T Consensus 59 ~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~ 138 (263)
T 2f33_A 59 EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK 138 (263)
T ss_dssp HHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTHHHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhHHHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCC
Confidence 34455555555554 777775433211 112233344555555544 4899999999988743 54
Q ss_pred CCchH
Q 026164 157 VPKNR 161 (242)
Q Consensus 157 iP~dR 161 (242)
-+.+.
T Consensus 139 ~~~~~ 143 (263)
T 2f33_A 139 TVDDT 143 (263)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 44443
Done!