BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026165
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q87S21|PEPB_VIBPA Peptidase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=pepB PE=3 SV=1
Length = 432
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 100 ADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQER 159
ADG YA S+ P + I LTG+A L + ++ + + +
Sbjct: 286 ADGLIYA------SEHNPELIIDCATLTGAAKNA--------LGNDYHALMSFDDELSHQ 331
Query: 160 CLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLH 219
L AA KE+ E + PL + + NF+D ++IS+ S G+ + +
Sbjct: 332 AL-----TAANKEK-EGLWPLPLADFHRGMLPSNFADLSNISSGDYSPGASTAAAFLS-Y 384
Query: 220 FCMKWKLAWFNSSCLGIFRIEVS 242
F +K W + C G +R S
Sbjct: 385 FVEDYKKGWLHFDCAGTYRKSAS 407
>sp|A7MU37|PEPB_VIBHB Peptidase B OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=pepB PE=3 SV=1
Length = 432
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 25/145 (17%)
Query: 100 ADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAK--LSLELFTAFRSMQTLIVQEQ 157
ADG YA S+ P + I LTG AA A+ +L F S Q L Q
Sbjct: 286 ADGLIYA------SEQNPELIIDCATLTG-AAKNALGNDYHALMSFDDELSHQALTAANQ 338
Query: 158 ERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCG 217
E+ E + PL + + NF+D ++IS+ S G+ +
Sbjct: 339 EK---------------EGLWPLPLADFHRGMLPSNFADLSNISSGDYSPGASTAAAFLS 383
Query: 218 LHFCMKWKLAWFNSSCLGIFRIEVS 242
+F +K W + C G +R S
Sbjct: 384 -YFVEDYKKGWLHFDCAGTYRKSAS 407
>sp|Q9KTX5|PEPB_VIBCH Peptidase B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=pepB PE=3 SV=2
Length = 429
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 100 ADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQER 159
ADG YA S+ P++ I LTG AA A+ L + S+
Sbjct: 285 ADGLIYA------SEQKPQLIIDCATLTG-AAKNALGNDYHALLSYDESLS--------- 328
Query: 160 CLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMNFSDKTDISASILSNGSQDSPGVCGLH 219
++ AA KE NE + PL +++ NF+D ++IS + G+ + +
Sbjct: 329 ----QQALAAAKEENEALWALPLAEFHREMLPSNFADLSNISNGDYTPGASTAAAFLS-Y 383
Query: 220 FCMKWKLAWFNSSCLGIFRIEVS 242
F ++ W + C +R S
Sbjct: 384 FVEGYQKGWLHFDCSATYRKSAS 406
>sp|O49286|SKP2B_ARATH F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1
Length = 360
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 26/123 (21%)
Query: 119 ISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAA---------- 168
+S+ LTRL+ S + M L L L F +QTL++++ + QLE A
Sbjct: 62 VSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKP--QLEDNAVEAIANHCHEL 119
Query: 169 --AEKERNENIQNQPLYSKRQ---KLQKMNFSDKTDISASILSNGSQDSPGVCGLHFCMK 223
+ ++ I + LYS + L K+N S T S + L++ ++ FC K
Sbjct: 120 QDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTR---------FCRK 170
Query: 224 WKL 226
K+
Sbjct: 171 LKI 173
>sp|P18593|VIRD3_AGRT5 Protein virD3 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=virD3 PE=4 SV=2
Length = 673
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 76 EFIDYVVASIKSEDVKLILEGHSN----------------ADGAAYAKIVAQKSKGMPRI 119
+F D+ A + D ++E HSN AD + V ++++ MP
Sbjct: 415 DFPDFTEAELAKIDA--LVESHSNRSLSVRNIVPDLRGAGADNVFRKEGVVERAEKMPID 472
Query: 120 SISLTRLTGS-AATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEK 171
S+SLTRL G + + ++ SLE F ++E ER + E +K
Sbjct: 473 SVSLTRLNGERSRSPKTSQASLEDFPDLTDADLAHIEESERIARTAVEKGKQK 525
>sp|Q65JE5|MIAB_BACLD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=miaB PE=3 SV=1
Length = 509
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 62 DDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISI 121
D + + + GG+ + I V S S+ +KL+ + D Y ++VA+ K MP S+
Sbjct: 308 DHLIEVLAKGGNLLDHIHLPVQSGSSDVLKLMARKY---DRERYLELVAKIKKAMPNASL 364
Query: 122 SLTRLTG-SAATEAMAKLSLELF--TAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQ 178
+ + G T+ + +L L+ F S T I +E AA K+
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGT-----PAAKMKD------ 413
Query: 179 NQPLYSKRQKLQKMN 193
N P+ K+++LQ++N
Sbjct: 414 NVPMRVKKERLQRLN 428
>sp|A9IMT5|IF2_BART1 Translation initiation factor IF-2 OS=Bartonella tribocorum (strain
CIP 105476 / IBS 506) GN=infB PE=3 SV=1
Length = 842
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 122 SLTRLTGSAATEAMAKLSL---ELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNE--- 175
S R EAMAK +L E+ R+++ +QE+ Q EKEA KER E
Sbjct: 71 SKPRFEEKKPQEAMAKSNLSSAEMEARLRALEEAHIQEKITREQAEKEARLAKEREEILK 130
Query: 176 -NIQNQPLYSKRQK 188
IQ Q + K+++
Sbjct: 131 QEIQEQEILQKQEE 144
>sp|Q499M7|LRIF1_RAT Ligand-dependent nuclear receptor-interacting factor 1 OS=Rattus
norvegicus GN=Lrif1 PE=2 SV=2
Length = 748
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 80 YVVASIKSEDVKLILE---GHSNADGAAYAKIVAQKSK--GMPR-ISISLTRLTGSAATE 133
Y +ASI +D++ N A+Y K A+ K G+ + + + LTR+ +
Sbjct: 514 YEMASILKKDIQERSNKKYSQGNHTKASYLKNDAEFKKIFGLTKDLRVCLTRIPDHLS-- 571
Query: 134 AMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQK-- 191
S + F +F ++++ ++ ++ EK+ + K+RN + Y+KR+K++
Sbjct: 572 -----STKSFDSFNNLKSSSYKDANVVMKEEKKQSFSKKRNAKPMKKMDYTKRRKIENAS 626
Query: 192 ---MNFSDKTDISASIL 205
MN + TD++ S L
Sbjct: 627 DMVMNVMNGTDVANSQL 643
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,579,484
Number of Sequences: 539616
Number of extensions: 2992725
Number of successful extensions: 11631
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 11602
Number of HSP's gapped (non-prelim): 51
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)