Query 026165
Match_columns 242
No_of_seqs 25 out of 27
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15384 DUF4610: Domain of un 97.0 0.0094 2E-07 53.2 11.0 111 26-147 13-128 (197)
2 PF06632 XRCC4: DNA double-str 94.5 0.85 1.8E-05 43.3 12.7 138 24-168 14-164 (342)
3 KOG4552 Vitamin-D-receptor int 67.6 4.9 0.00011 37.3 2.9 56 144-200 57-126 (272)
4 cd07694 Ig2_CD4 Second immunog 64.6 4.6 9.9E-05 32.1 1.8 44 13-61 31-75 (88)
5 PF05013 FGase: N-formylglutam 54.2 20 0.00043 31.0 4.1 84 39-126 130-218 (222)
6 PF14088 DUF4268: Domain of un 53.0 1.1E+02 0.0024 24.5 8.0 72 74-155 7-82 (140)
7 PF14147 Spore_YhaL: Sporulati 52.5 60 0.0013 24.0 5.7 41 134-174 8-52 (52)
8 cd07766 DHQ_Fe-ADH Dehydroquin 49.1 15 0.00032 32.9 2.7 28 104-131 92-120 (332)
9 KOG2430 Glycosyl hydrolase, fa 47.3 14 0.00031 36.9 2.4 77 35-128 222-300 (587)
10 PF02731 SKIP_SNW: SKIP/SNW do 41.8 70 0.0015 28.0 5.5 37 111-150 77-122 (158)
11 PF11740 KfrA_N: Plasmid repli 41.6 1.6E+02 0.0035 22.6 8.2 27 61-88 22-48 (120)
12 PF02362 B3: B3 DNA binding do 40.8 12 0.00027 27.3 0.7 47 39-90 33-79 (100)
13 PF02318 FYVE_2: FYVE-type zin 35.5 1.1E+02 0.0024 24.4 5.4 36 145-180 14-49 (118)
14 PF07889 DUF1664: Protein of u 33.4 82 0.0018 26.4 4.5 52 126-180 36-90 (126)
15 KOG3919 Kinesin-associated fas 32.9 29 0.00062 34.1 2.0 35 57-91 40-78 (374)
16 smart00327 VWA von Willebrand 32.4 60 0.0013 24.7 3.3 44 37-82 105-155 (177)
17 cd00198 vWFA Von Willebrand fa 30.6 73 0.0016 23.2 3.4 49 34-83 98-153 (161)
18 PHA02566 alt ADP-ribosyltransf 30.1 13 0.00028 38.9 -0.8 29 107-135 159-193 (684)
19 cd06843 PLPDE_III_PvsE_like Ty 28.9 1.2E+02 0.0026 27.9 5.2 55 59-113 192-271 (377)
20 COG0219 CspR Predicted rRNA me 27.0 2.3E+02 0.0051 24.8 6.3 72 71-149 61-149 (155)
21 PF09260 DUF1966: Domain of un 24.2 58 0.0013 25.5 2.0 27 104-130 63-89 (91)
22 cd00953 KDG_aldolase KDG (2-ke 24.2 2.5E+02 0.0054 25.2 6.2 94 54-168 135-235 (279)
23 PF09314 DUF1972: Domain of un 24.1 3.2E+02 0.0069 24.0 6.7 67 72-147 17-84 (185)
24 PF07946 DUF1682: Protein of u 22.6 2.7E+02 0.0058 25.9 6.3 33 115-147 213-248 (321)
25 PRK02289 4-oxalocrotonate taut 22.6 1.8E+02 0.0039 20.2 4.1 30 116-148 1-30 (60)
26 PRK02220 4-oxalocrotonate taut 22.3 1.9E+02 0.0041 19.6 4.1 30 116-148 1-30 (61)
27 PRK00745 4-oxalocrotonate taut 21.9 1.9E+02 0.0042 19.6 4.1 30 116-148 1-30 (62)
28 KOG1369 Hexokinase [Carbohydra 21.5 40 0.00087 33.9 0.7 51 65-115 413-472 (474)
29 PF12209 SAC3: Leucine permeas 20.9 95 0.0021 23.9 2.5 18 133-150 37-54 (79)
30 PF06670 Etmic-2: Microneme pr 20.0 1.2E+02 0.0027 29.2 3.6 110 22-132 201-326 (379)
31 KOG2441 mRNA splicing factor/p 20.0 1.9E+02 0.0042 29.4 5.0 37 111-150 250-295 (506)
No 1
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=97.01 E-value=0.0094 Score=53.16 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=94.8
Q ss_pred cceEEEEeCC-----CCCCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCCCCC
Q 026165 26 GRFLFHVSAP-----DSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNA 100 (242)
Q Consensus 26 ~PfLFh~~A~-----ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~VKL~L~~~s~s 100 (242)
-+|+++-+-. +.+...|+|||--. -|.+.++-++|+.+|+-.|.- +..||..-+.+.+..+.|.|-|-.+
T Consensus 13 ~ryvCyce~~~~~~~~~g~~~i~vTDg~d-vW~t~~t~dsL~~~k~~~~L~-~~Edy~~rfR~Ac~~~~vtvtlqed--- 87 (197)
T PF15384_consen 13 PRYVCYCEGEGSGDGDAGVWNIYVTDGAD-VWSTCFTPDSLAALKARFGLS-SAEDYFSRFRAACEQQAVTVTLQED--- 87 (197)
T ss_pred CcEEEEEeCCCCCCCCCCeeEEEecccHH-hhhhccCHHHHHHHHhhcccc-hHHHHHHHHHHHhhcCeeEEEEecC---
Confidence 3588888877 78889999999874 499999999999999999984 6889999999999999999999863
Q ss_pred CCccceeeeeeecCCCceeEEeecccccchHHHHHHHhhHHHHHHHH
Q 026165 101 DGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFR 147 (242)
Q Consensus 101 ~Ga~~akLVAqKaKGmPrItI~L~kl~~saasD~manlSl~Lf~afr 147 (242)
+++-+-++|-.-+++.|.|+.+..+...+-.+-+.|.+...
T Consensus 88 ------~a~Ltls~g~s~L~~dL~k~p~~Ea~~~Lq~L~f~lAe~v~ 128 (197)
T PF15384_consen 88 ------RASLTLSGGPSALTFDLSKVPAPEAAPRLQALTFRLAERVC 128 (197)
T ss_pred ------eEEEEecCCCccceEEhhhCCCchhhHHHHHHHHHHHHHHH
Confidence 44456689999999999999999998888877777765553
No 2
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=94.50 E-value=0.85 Score=43.30 Aligned_cols=138 Identities=14% Similarity=0.202 Sum_probs=83.0
Q ss_pred CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccc-----cceEeecC
Q 026165 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSE-----DVKLILEG 96 (242)
Q Consensus 24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~-----~VKL~L~~ 96 (242)
+-..++.++.=... +|+.|.+||-|+ +|.+..|-.++....++. ++++.+|++-+.-.|-.+ .-.+.+-.
T Consensus 14 p~~~yfL~~~W~~~~~~~F~i~lTDG~s-aW~g~vs~~ei~~~A~~~--~~~~~eYv~~l~kaL~~~~~~~~~y~f~~~~ 90 (342)
T PF06632_consen 14 PDSIYFLQVSWEKDLGSGFDITLTDGQS-AWSGTVSEEEIRQRAKDW--DMEVEEYVQELKKALTGQQQPSSEYSFDLTE 90 (342)
T ss_dssp CSSEEEEEEEESSSGGGEEEEEEESSSS-EEEEEEEHHHHHHHHHHT--TS-HHHHHHHHHHHHTSSSSSSSEEEEEE--
T ss_pred CCceEEEEEEeccCCCCceEEEEecCCC-ceeeecCHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCCcceEEEee
Confidence 33445666654432 589999999995 899999999999988875 688999999999999654 23444421
Q ss_pred CCCCCCccceeeeeeecCCCceeEEee-----cccccchH-HHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 026165 97 HSNADGAAYAKIVAQKSKGMPRISISL-----TRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAA 168 (242)
Q Consensus 97 ~s~s~Ga~~akLVAqKaKGmPrItI~L-----~kl~~saa-sD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~ 168 (242)
...|.....+-=.| -..-|+.-| ..+..-+. -.-|-++++.....+...-.++.+|-++..+-.+.+.
T Consensus 91 --~~~~~~~l~~t~~K--~~~~it~rLGsv~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~ 164 (342)
T PF06632_consen 91 --DRESNKSLSFTIEK--RLKDITFRLGSVKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLL 164 (342)
T ss_dssp -----ETTTTEEEEEE--EESSEEEEEEEEE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCCCceEEEEEEE--ecCCceEEEeeEECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233344443333 355666655 33333221 1124456677777776666666666665544333333
No 3
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=67.59 E-value=4.9 Score=37.33 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=41.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHhhh-hcccC-C--cch----------hHHHHhhhcCCCCCccc
Q 026165 144 TAFRSMQTLIVQEQERCLQLEKEAAAEKERN-ENIQN-Q--PLY----------SKRQKLQKMNFSDKTDI 200 (242)
Q Consensus 144 ~afrs~q~~~~~eqe~~s~L~~~L~sEKekn-e~iQ~-q--~~s----------s~rqKlqk~n~s~k~~~ 200 (242)
+.||++.+ ++-||+...|+|+.|.++-||. ++||. | .-+ --+|||..|+.-+|--|
T Consensus 57 ~ef~~llk-la~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpv 126 (272)
T KOG4552|consen 57 DEFKTLLK-LAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPV 126 (272)
T ss_pred HHHHHHHH-HhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777664 5678999999999999999887 55543 2 111 45699999999988643
No 4
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=64.59 E-value=4.6 Score=32.05 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=33.0
Q ss_pred ccccccCCCCCCccceEEEEeCCCCCCeEE-EEeeccccchhhcccccch
Q 026165 13 PKAEWADSRSDSLGRFLFHVSAPDSSHLLI-QVTDFRSNTWEAKRSVLQL 61 (242)
Q Consensus 13 ak~e~~~~~s~~l~PfLFh~~A~ds~hL~v-~vTDfHSntW~~slSv~~L 61 (242)
++.+|-+|.+-.- +...++...|.+ .|+..||++|.+..++++-
T Consensus 31 ~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k 75 (88)
T cd07694 31 FKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSS 75 (88)
T ss_pred ccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEECce
Confidence 3668888775532 556677777655 6999999999999998754
No 5
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=54.21 E-value=20 Score=31.00 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred CeEEEEeeccccchhhcccccchhhhHh-hhcCCCC---hHHHHHHHHHhcc-cccceEeecCCCCCCCccceeeeeeec
Q 026165 39 HLLIQVTDFRSNTWEAKRSVLQLDDMRD-EIGIGGS---WSEFIDYVVASIK-SEDVKLILEGHSNADGAAYAKIVAQKS 113 (242)
Q Consensus 39 hL~v~vTDfHSntW~~slSv~~LeDlRD-~VGIGGS---WsdFldYl~asls-S~~VKL~L~~~s~s~Ga~~akLVAqKa 113 (242)
|-.+++-|+||-+....-.-.. ..+| +||+... +.++++.+.+.|+ +.-.++....+=. |....+=..+.+
T Consensus 130 ~g~~illd~HS~~~~~~~~~~~--~~~~~~lG~~~~~s~~~~l~~~~~~~l~~~~g~~v~~N~Py~--Gg~~~~~~~~~~ 205 (222)
T PF05013_consen 130 FGKVILLDCHSMPPVPPGREDD--PRPDIVLGTLHGPSCDPELVDALAEALEASDGYSVRVNEPYS--GGYITRYYGRPA 205 (222)
T ss_dssp CS-EEEEEEEEE-TCCCCCCT------SECEECCTTTSS-HHHHHHHHHHCC-CTTS-EEETSS----GGHCCCHHHCCC
T ss_pred cCceEEEEeccCCCcccccccC--CCCCeEEEcCCCCCCCHHHHHHHHHHhhcccCcEEeeCCCCC--CcchhcEEecCC
Confidence 5678889999998875433222 3333 4666544 8899999999999 5555666665422 222222266678
Q ss_pred CCCceeEEeeccc
Q 026165 114 KGMPRISISLTRL 126 (242)
Q Consensus 114 KGmPrItI~L~kl 126 (242)
+|.|-|.|++.+-
T Consensus 206 ~~v~~iqiEi~~~ 218 (222)
T PF05013_consen 206 RGVHAIQIEINRD 218 (222)
T ss_dssp CTEEEEEEEEEGG
T ss_pred CCceEEEEEEEHh
Confidence 9999999998763
No 6
>PF14088 DUF4268: Domain of unknown function (DUF4268)
Probab=53.00 E-value=1.1e+02 Score=24.50 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcccccceEeecCCCC----CCCccceeeeeeecCCCceeEEeecccccchHHHHHHHhhHHHHHHHHHH
Q 026165 74 WSEFIDYVVASIKSEDVKLILEGHSN----ADGAAYAKIVAQKSKGMPRISISLTRLTGSAATEAMAKLSLELFTAFRSM 149 (242)
Q Consensus 74 WsdFldYl~aslsS~~VKL~L~~~s~----s~Ga~~akLVAqKaKGmPrItI~L~kl~~saasD~manlSl~Lf~afrs~ 149 (242)
|+.|++|+...- ..++-.=+.+.+ +.|.+...|...-.+. ++.|.|.--.+. ....-++|+.+...
T Consensus 7 Wt~f~~~~~~~~--~~~~~~~p~~~~W~~~~~G~sg~~~~~~~~~~--~~~V~l~I~~~d------~~~n~~~fe~L~~~ 76 (140)
T PF14088_consen 7 WTEFLEYLKEKP--PLFSNRKPSPDHWINYSTGISGVSLSFVFNKK--RARVELYIDRPD------KEENKEIFEQLKSQ 76 (140)
T ss_pred HHHHHHHHHhcc--cccccCCCCCCcceEecCCCCCEEEEEEEeCC--EEEEEEEEcCCC------HHHHHHHHHHHHHH
Confidence 888999987654 222222222222 6688888887777766 666666654443 34455678888776
Q ss_pred hHHhHH
Q 026165 150 QTLIVQ 155 (242)
Q Consensus 150 q~~~~~ 155 (242)
++.+..
T Consensus 77 k~~IE~ 82 (140)
T PF14088_consen 77 KEEIEE 82 (140)
T ss_pred HHHHHH
Confidence 644443
No 7
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=52.50 E-value=60 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHhhHHHHHHHHHHhHHhHHHHHHHHH----HHHHHHHHHhhh
Q 026165 134 AMAKLSLELFTAFRSMQTLIVQEQERCLQ----LEKEAAAEKERN 174 (242)
Q Consensus 134 ~manlSl~Lf~afrs~q~~~~~eqe~~s~----L~~~L~sEKekn 174 (242)
+++-+-++-|-+.+++++--..||+.+.+ -|+.+..||||+
T Consensus 8 vi~gI~~S~ym~v~t~~eE~~~dq~~IEkEGevymeR~e~ererR 52 (52)
T PF14147_consen 8 VIAGIIFSGYMAVKTAKEEREIDQEFIEKEGEVYMERMEEERERR 52 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhccC
Confidence 45667788888899998888888888765 466777777763
No 8
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=49.12 E-value=15 Score=32.92 Aligned_cols=28 Identities=39% Similarity=0.451 Sum_probs=17.6
Q ss_pred cceeeeeeec-CCCceeEEeecccccchH
Q 026165 104 AYAKIVAQKS-KGMPRISISLTRLTGSAA 131 (242)
Q Consensus 104 ~~akLVAqKa-KGmPrItI~L~kl~~saa 131 (242)
|.||.+|-.. +|+|.|.||-|-.+|+..
T Consensus 92 D~aK~ia~~~~~~~p~i~iPTt~~tgse~ 120 (332)
T cd07766 92 DTAKAVAALLNRGLPIIIVPTTAATGSEV 120 (332)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhcc
Confidence 5666665543 477777777777666544
No 9
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=47.26 E-value=14 Score=36.89 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCCCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCCCCCC--Cccceeeeeee
Q 026165 35 PDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNAD--GAAYAKIVAQK 112 (242)
Q Consensus 35 ~ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~VKL~L~~~s~s~--Ga~~akLVAqK 112 (242)
+.++.|.=++-+.||+.|. |.+-|||.+...|.+|+.... ++|+.+|--+ ..-+--+.--+
T Consensus 222 ~rss~l~g~~inihsgdw~-----------rkdsgigagidsyyey~lkay------illgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 222 HRSSDLMGTTINIHSGDWT-----------RKDSGIGAGIDSYYEYLLKAY------ILLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred cccccccceeEEeccCcce-----------ecccCcCcchHHHHHHHHHHh------heeccHHHHHHHHHHHHHHHHHh
Confidence 4567799999999999997 678899999999999987553 3444332100 01122344556
Q ss_pred cCCCceeEEeeccccc
Q 026165 113 SKGMPRISISLTRLTG 128 (242)
Q Consensus 113 aKGmPrItI~L~kl~~ 128 (242)
+||--.+.+-.+|-+-
T Consensus 285 ~k~pi~ldvhihkp~l 300 (587)
T KOG2430|consen 285 NKGPIFLDVHIHKPML 300 (587)
T ss_pred cCCCeEEEEecccchh
Confidence 7886667777766543
No 10
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=41.75 E-value=70 Score=27.99 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=27.4
Q ss_pred eec-CCCceeEEeecc--------cccchHHHHHHHhhHHHHHHHHHHh
Q 026165 111 QKS-KGMPRISISLTR--------LTGSAATEAMAKLSLELFTAFRSMQ 150 (242)
Q Consensus 111 qKa-KGmPrItI~L~k--------l~~saasD~manlSl~Lf~afrs~q 150 (242)
||+ || .||+|++ +.+.-.||..+.||-+||.|=+.+.
T Consensus 77 WKN~kG---ytIpLDKRlaadgr~l~~~~INd~Fa~LseAL~~Ad~~aR 122 (158)
T PF02731_consen 77 WKNPKG---YTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIADRKAR 122 (158)
T ss_pred ccCCCC---CccCHHHHHhhcccccCCccccHHHHHHHHHHHHHHHHHH
Confidence 555 55 4788775 3445578999999999999887665
No 11
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=41.60 E-value=1.6e+02 Score=22.58 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=21.7
Q ss_pred hhhhHhhhcCCCChHHHHHHHHHhcccc
Q 026165 61 LDDMRDEIGIGGSWSEFIDYVVASIKSE 88 (242)
Q Consensus 61 LeDlRD~VGIGGSWsdFldYl~aslsS~ 88 (242)
.+.+|..+| |||.++=..||..--...
T Consensus 22 ~~~Vr~~lG-~GS~~ti~~~l~~w~~~~ 48 (120)
T PF11740_consen 22 VRAVRERLG-GGSMSTISKHLKEWREER 48 (120)
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence 467899999 999999888888755443
No 12
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=40.80 E-value=12 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=33.2
Q ss_pred CeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccc
Q 026165 39 HLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV 90 (242)
Q Consensus 39 hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~V 90 (242)
...|.+.|-....|...+++ ..=.+...|+++|.+|++ ...|+-||+
T Consensus 33 ~~~v~l~~~~g~~W~v~~~~---~~~~~~~~l~~GW~~Fv~--~n~L~~GD~ 79 (100)
T PF02362_consen 33 SREVTLKDPDGRSWPVKLKY---RKNSGRYYLTGGWKKFVR--DNGLKEGDV 79 (100)
T ss_dssp -CEEEEEETTTEEEEEEEEE---ECCTTEEEEETTHHHHHH--HCT--TT-E
T ss_pred CeEEEEEeCCCCEEEEEEEE---EccCCeEEECCCHHHHHH--HcCCCCCCE
Confidence 45788899889999999866 222344889999999986 467777775
No 13
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=35.45 E-value=1.1e+02 Score=24.37 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=28.8
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026165 145 AFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (242)
Q Consensus 145 afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (242)
.++...+.-.+|++|+.+|...|..|..|..++..+
T Consensus 14 Vl~R~~~l~~~E~~Ri~kLk~~L~~e~~r~~~~~~~ 49 (118)
T PF02318_consen 14 VLQRDEELRKKEEERIRKLKQELQKEKMRREALGNS 49 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 445666677899999999999998888888777654
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.41 E-value=82 Score=26.40 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=38.7
Q ss_pred cccchHHHHHHHhhHH---HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026165 126 LTGSAATEAMAKLSLE---LFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (242)
Q Consensus 126 l~~saasD~manlSl~---Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (242)
+|-+..+|+.++++=. +++++..+++|+. +|+..|-..|.+=+|-.+-|+.+
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~e 90 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDE 90 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5667788888888764 5889999999988 67777777777666666555544
No 15
>KOG3919 consensus Kinesin-associated fasciculation and elongation protein involved in axonal transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.89 E-value=29 Score=34.08 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=28.8
Q ss_pred cccchhhhHhhhcCCCChHHHHHHH----HHhcccccce
Q 026165 57 SVLQLDDMRDEIGIGGSWSEFIDYV----VASIKSEDVK 91 (242)
Q Consensus 57 Sv~~LeDlRD~VGIGGSWsdFldYl----~aslsS~~VK 91 (242)
|++.||..+|+||-+||..|.|+-+ ..||.-.++|
T Consensus 40 sls~lE~~s~ei~~~~SmEDLVn~FDEKi~vCf~ny~~~ 78 (374)
T KOG3919|consen 40 SLSGEERGSDELGAPGSLEDLVNLFDEKIPVCFPNYEGR 78 (374)
T ss_pred ccchhhhccchhcCCccHHHHHHhhhhhhhhcccccccc
Confidence 9999999999999999999998875 4556555544
No 16
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=32.44 E-value=60 Score=24.71 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=27.5
Q ss_pred CCCeEEEEeeccccchhhcccccchhhhHhh------hcCCCC-hHHHHHHHH
Q 026165 37 SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDE------IGIGGS-WSEFIDYVV 82 (242)
Q Consensus 37 s~hL~v~vTDfHSntW~~slSv~~LeDlRD~------VGIGGS-WsdFldYl~ 82 (242)
..++.|++||...+.. ....+.++.++.. ||+|.. ..+++..+-
T Consensus 105 ~~~~iviitDg~~~~~--~~~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~ 155 (177)
T smart00327 105 APKVLILITDGESNDG--GDLLKAAKELKRSGVKVFVVGVGNDVDEEELKKLA 155 (177)
T ss_pred CCeEEEEEcCCCCCCC--ccHHHHHHHHHHCCCEEEEEEccCccCHHHHHHHh
Confidence 3679999999987754 2223344444443 677766 666666554
No 17
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=30.58 E-value=73 Score=23.18 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEeeccccchhhcccccchhhhHh------hhcCCC-ChHHHHHHHHH
Q 026165 34 APDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRD------EIGIGG-SWSEFIDYVVA 83 (242)
Q Consensus 34 A~ds~hL~v~vTDfHSntW~~slSv~~LeDlRD------~VGIGG-SWsdFldYl~a 83 (242)
.++...+.|++||.+.+.+. .-....++.++. .||+|+ .=..+++.|..
T Consensus 98 ~~~~~~~lvvitDg~~~~~~-~~~~~~~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 98 RPNARRVIILLTDGEPNDGP-ELLAEAARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred CCCCceEEEEEeCCCCCCCc-chhHHHHHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 45678899999999976554 122334555554 677776 55555555443
No 18
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=30.09 E-value=13 Score=38.86 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=22.3
Q ss_pred eeeeeec------CCCceeEEeecccccchHHHHH
Q 026165 107 KIVAQKS------KGMPRISISLTRLTGSAATEAM 135 (242)
Q Consensus 107 kLVAqKa------KGmPrItI~L~kl~~saasD~m 135 (242)
=||.+|+ ||||.|.=+|=.-+++.+.||.
T Consensus 159 Imv~RK~~~iedIkG~p~Id~eLyTkv~s~VGdvy 193 (684)
T PHA02566 159 ILVYRKSANIEDIKGLPEIDPELYTKVESKVGDVY 193 (684)
T ss_pred EEEEeccCCcccCCCCCCCCHHHeeecccccccEE
Confidence 3567777 8999999888777777777654
No 19
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=28.92 E-value=1.2e+02 Score=27.85 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=37.8
Q ss_pred cchhhhHhhhc-------CCCCh-------------HHHHHHHHHhccc--ccceEeecCCCC---CCCccceeeeeeec
Q 026165 59 LQLDDMRDEIG-------IGGSW-------------SEFIDYVVASIKS--EDVKLILEGHSN---ADGAAYAKIVAQKS 113 (242)
Q Consensus 59 ~~LeDlRD~VG-------IGGSW-------------sdFldYl~aslsS--~~VKL~L~~~s~---s~Ga~~akLVAqKa 113 (242)
..++++.+..| |||+| .+|.+.+...+.. .+++|.+|+-.. ..|.--+|.+..|.
T Consensus 192 ~~~~~l~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~EpGR~lva~ag~lv~~V~~~k~ 271 (377)
T cd06843 192 ETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLAEYEPGLTLRFECGRYISAYCGYYVTEVLDLKR 271 (377)
T ss_pred HHHHHHHHHhCCCCcEEEecCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEccChhhhcCceEEEEEEEEEee
Confidence 34556655444 78888 4777878887765 479999996533 55666777777775
No 20
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=27.05 E-value=2.3e+02 Score=24.81 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHhcccccceEeec---CCCC-CC---CccceeeeeeecCCCc----------eeEEeecccccchHHH
Q 026165 71 GGSWSEFIDYVVASIKSEDVKLILE---GHSN-AD---GAAYAKIVAQKSKGMP----------RISISLTRLTGSAATE 133 (242)
Q Consensus 71 GGSWsdFldYl~aslsS~~VKL~L~---~~s~-s~---Ga~~akLVAqKaKGmP----------rItI~L~kl~~saasD 133 (242)
=.||.+|++.... ..+|++- +... ++ -..-.-|-..-++|+| .|.||.. -..++.|=
T Consensus 61 h~s~e~fl~~~~~-----~~rl~~~tt~~~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~-~~~RSLNL 134 (155)
T COG0219 61 HDSLEAFLEAEPI-----GGRLFALTTKGTTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMR-PGVRSLNL 134 (155)
T ss_pred eCCHHHHHhhccC-----CceEEEEEeccccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccC-CCCccchH
Confidence 4688889876653 2333332 1111 11 1122567777889999 4999998 22244432
Q ss_pred HHHHhhHHHHHHHHHH
Q 026165 134 AMAKLSLELFTAFRSM 149 (242)
Q Consensus 134 ~manlSl~Lf~afrs~ 149 (242)
+ .+.+.-+|+|+|..
T Consensus 135 s-nsvavv~yEa~RQ~ 149 (155)
T COG0219 135 S-NTVAVVLYEALRQL 149 (155)
T ss_pred H-HHHHHHHHHHHHHh
Confidence 2 23567799999754
No 21
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=24.23 E-value=58 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=19.4
Q ss_pred cceeeeeeecCCCceeEEeecccccch
Q 026165 104 AYAKIVAQKSKGMPRISISLTRLTGSA 130 (242)
Q Consensus 104 ~~akLVAqKaKGmPrItI~L~kl~~sa 130 (242)
+.+.|.....+|+|+|=+|-.++.++.
T Consensus 63 ~~G~l~v~m~~G~P~Vl~P~~~l~gsG 89 (91)
T PF09260_consen 63 SNGTLTVPMSNGEPRVLYPASLLSGSG 89 (91)
T ss_dssp TTS-EEEEESTT--EEEEECHHHTTSS
T ss_pred CCCEEEEEEcCCceEEEEEHHHccCCc
Confidence 456678888899999999999888753
No 22
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.17 E-value=2.5e+02 Score=25.20 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=52.9
Q ss_pred hcccccchhhhHh----hhcCCCChHH---HHHHHHHhcccccceEeecCCCCCCCccceeeeeeecCCCceeEEeeccc
Q 026165 54 AKRSVLQLDDMRD----EIGIGGSWSE---FIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRL 126 (242)
Q Consensus 54 ~slSv~~LeDlRD----~VGIGGSWsd---FldYl~aslsS~~VKL~L~~~s~s~Ga~~akLVAqKaKGmPrItI~L~kl 126 (242)
..++++.++.|-+ .|||..|-.+ +.+|... .+++.+.-+.+.- ..-..+.=++|. |
T Consensus 135 ~~l~~~~l~~L~~~~p~vvgiK~s~~d~~~~~~~~~~---~~~~~v~~G~d~~-----~~~~l~~Ga~G~--i------- 197 (279)
T cd00953 135 YDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKRL---VPDFKVYSGPDSL-----IFSALRSGLDGS--V------- 197 (279)
T ss_pred CCCCHHHHHHHHhcCCCEEEEEeCccCHHHHHHHHHh---CCCeEEEEccHHH-----HHHHHHcCCCeE--E-------
Confidence 3567777777753 3788766544 5554321 2367655443211 000000011121 0
Q ss_pred ccchHHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 026165 127 TGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAA 168 (242)
Q Consensus 127 ~~saasD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~ 168 (242)
++.+.++-.+..++|+++. .+.+.+.|.+..++++.+.
T Consensus 198 --~~~~n~~P~~~~~l~~a~~--~~~a~~~q~~~~~l~~~~~ 235 (279)
T cd00953 198 --AAASNYLPEVFVKIKDHVA--IEDAFKLQFLINEVLDASR 235 (279)
T ss_pred --echhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999997 4455666788888877653
No 23
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=24.13 E-value=3.2e+02 Score=23.97 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHhcccccceEeecCCCCCCCccceeeeeeec-CCCceeEEeecccccchHHHHHHHhhHHHHHHHH
Q 026165 72 GSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKS-KGMPRISISLTRLTGSAATEAMAKLSLELFTAFR 147 (242)
Q Consensus 72 GSWsdFldYl~aslsS~~VKL~L~~~s~s~Ga~~akLVAqKa-KGmPrItI~L~kl~~saasD~manlSl~Lf~afr 147 (242)
|+|..|+++|..-+.+..+++..--.+...+. + ... +|+.++.|+..+. + ..+++.--.++|..|++
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~---~---~~~y~gv~l~~i~~~~~-g--~~~si~yd~~sl~~al~ 84 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPY---K---EFEYNGVRLVYIPAPKN-G--SAESIIYDFLSLLHALR 84 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCC---C---CcccCCeEEEEeCCCCC-C--chHHHHHHHHHHHHHHH
Confidence 89999999999999988776655432221111 1 333 8899999987752 2 22444444445555553
No 24
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=22.63 E-value=2.7e+02 Score=25.87 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCceeEEeecccccch---HHHHHHHhhHHHHHHHH
Q 026165 115 GMPRISISLTRLTGSA---ATEAMAKLSLELFTAFR 147 (242)
Q Consensus 115 GmPrItI~L~kl~~sa---asD~manlSl~Lf~afr 147 (242)
.-|+|.|++..-.... .-..+-++.+.|.+.+.
T Consensus 213 ~~~~l~~~~~lp~~~~~~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 213 PKKRLIFSFRLPSSSDDMEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred cCcEEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 4677777766655555 45666678888887774
No 25
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=22.58 E-value=1.8e+02 Score=20.23 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=21.2
Q ss_pred CceeEEeecccccchHHHHHHHhhHHHHHHHHH
Q 026165 116 MPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (242)
Q Consensus 116 mPrItI~L~kl~~saasD~manlSl~Lf~afrs 148 (242)
||.|+|.+-. |+ -.|....|+-++.++...
T Consensus 1 MP~i~i~~~~--Gr-s~EqK~~L~~~it~a~~~ 30 (60)
T PRK02289 1 MPFVRIDLFE--GR-SQEQKNALAREVTEVVSR 30 (60)
T ss_pred CCEEEEEECC--CC-CHHHHHHHHHHHHHHHHH
Confidence 8999999977 44 446666676677666643
No 26
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=22.34 E-value=1.9e+02 Score=19.62 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred CceeEEeecccccchHHHHHHHhhHHHHHHHHH
Q 026165 116 MPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (242)
Q Consensus 116 mPrItI~L~kl~~saasD~manlSl~Lf~afrs 148 (242)
||.|+|.+-+ |+ --+....|+-++.+++..
T Consensus 1 MP~i~i~~~~--Gr-s~eqk~~l~~~it~~l~~ 30 (61)
T PRK02220 1 MPYVHIKLIE--GR-TEEQLKALVKDVTAAVSK 30 (61)
T ss_pred CCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 8999997765 44 345666666666666643
No 27
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.86 E-value=1.9e+02 Score=19.63 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=20.1
Q ss_pred CceeEEeecccccchHHHHHHHhhHHHHHHHHH
Q 026165 116 MPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (242)
Q Consensus 116 mPrItI~L~kl~~saasD~manlSl~Lf~afrs 148 (242)
||.|+|.+.. |+ -.+....|+-.+.+++..
T Consensus 1 MP~i~I~~~~--gr-s~eqk~~l~~~it~~l~~ 30 (62)
T PRK00745 1 MPTFHIELFE--GR-TVEQKRKLVEEITRVTVE 30 (62)
T ss_pred CCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 8999999876 33 346666666666666533
No 28
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=21.47 E-value=40 Score=33.87 Aligned_cols=51 Identities=33% Similarity=0.511 Sum_probs=40.2
Q ss_pred HhhhcCCCCh----HHHHHHHHHhcc-----cccceEeecCCCCCCCccceeeeeeecCC
Q 026165 65 RDEIGIGGSW----SEFIDYVVASIK-----SEDVKLILEGHSNADGAAYAKIVAQKSKG 115 (242)
Q Consensus 65 RD~VGIGGSW----sdFldYl~asls-----S~~VKL~L~~~s~s~Ga~~akLVAqKaKG 115 (242)
|=.||.+||. +.|-+|++..++ +-.|++.+..+.++.||+-+-.|+.+.|-
T Consensus 413 ~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dgSg~GAAL~Aav~~~~~~ 472 (474)
T KOG1369|consen 413 RVTVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDGSGRGAALIAAVASRLKQ 472 (474)
T ss_pred ceEEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCCccccHHHHHHHHhhhhc
Confidence 4458999996 568888888887 46899999999999998877777766543
No 29
>PF12209 SAC3: Leucine permease transcriptional regulator helical domain; InterPro: IPR024293 This domain is found in fungal proteins, including the nuclear mRNA export protein SAC3. It has been suggested this domain provides a scaffold within the yeast Sac3:Cdc31:Sus1:Thp1 (TREX-2) complex to integrate interactions between protein complexes to facilitate the coupling of transcription and mRNA export during gene expression [].; PDB: 3FWC_N 3FWB_B.
Probab=20.85 E-value=95 Score=23.91 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 026165 133 EAMAKLSLELFTAFRSMQ 150 (242)
Q Consensus 133 D~manlSl~Lf~afrs~q 150 (242)
+.|.+||=+||.||-+-+
T Consensus 37 ~iI~sLs~ELy~AFi~E~ 54 (79)
T PF12209_consen 37 QIIDSLSEELYDAFIHEQ 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 569999999999996543
No 30
>PF06670 Etmic-2: Microneme protein Etmic-2; InterPro: IPR009556 This family consists of several Microneme protein Etmic-2 sequences from Eimeria tenella. Etmic-2 is a 50 kDa acidic protein, which is found within the microneme organelles of E. tenella sporozoites and merozoites [].
Probab=20.01 E-value=1.2e+02 Score=29.17 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCccceEEEEeCCCCCCeEEEEeeccccchhh-------cccccchhh-hHhhhcCCCChHHHHHHHHHhcccccceEe
Q 026165 22 SDSLGRFLFHVSAPDSSHLLIQVTDFRSNTWEA-------KRSVLQLDD-MRDEIGIGGSWSEFIDYVVASIKSEDVKLI 93 (242)
Q Consensus 22 s~~l~PfLFh~~A~ds~hL~v~vTDfHSntW~~-------slSv~~LeD-lRD~VGIGGSWsdFldYl~aslsS~~VKL~ 93 (242)
..+-.||..-+.-.+.-...|.+--..+-.+-+ .+-+++.=. -||.-|=.|||-|-.--+..+|+--||.++
T Consensus 201 agpttp~mv~i~q~~p~e~~vr~~~wi~teylcsrrgvsrifkysdfcslcrdas~G~GSW~E~~V~VG~~i~~RD~~V~ 280 (379)
T PF06670_consen 201 AGPTTPLMVLITQQNPKEVEVRVLAWISTEYLCSRRGVSRIFKYSDFCSLCRDASTGDGSWHENFVDVGSSINHRDVMVN 280 (379)
T ss_pred CCCCCceEEEEecCCCceEEEEEEEeecchhhhcccccchhhcccchhhhhccccCCCccceeeeEEecccccCceeEEE
Confidence 456689999998888887877775444333322 233333333 388889999998866667889999999999
Q ss_pred ecC--CCC--CCCccceeeeeeecCCCcee----EEeecccccchHH
Q 026165 94 LEG--HSN--ADGAAYAKIVAQKSKGMPRI----SISLTRLTGSAAT 132 (242)
Q Consensus 94 L~~--~s~--s~Ga~~akLVAqKaKGmPrI----tI~L~kl~~saas 132 (242)
+.. +++ ..|.++|-||+-|.| |=.- -|.||+--.++++
T Consensus 281 ~SDC~P~SLRiYGSsSADLVT~~E~-~C~A~~P~Li~LT~P~~~~~s 326 (379)
T PF06670_consen 281 VSDCVPHSLRIYGSSSADLVTVDEK-MCQADDPQLINLTSPHENRTS 326 (379)
T ss_pred ecccCccceEEecccccceEeeccc-cccCCChhheeccCCCcccCC
Confidence 983 333 789999999998874 3221 2556665555554
No 31
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=20.01 E-value=1.9e+02 Score=29.39 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=27.2
Q ss_pred eec-CCCceeEEeecccccc--------hHHHHHHHhhHHHHHHHHHHh
Q 026165 111 QKS-KGMPRISISLTRLTGS--------AATEAMAKLSLELFTAFRSMQ 150 (242)
Q Consensus 111 qKa-KGmPrItI~L~kl~~s--------aasD~manlSl~Lf~afrs~q 150 (242)
||+ || .||+|+|=.+. -.||..|.||-.||-|=|.+.
T Consensus 250 WKNpkG---YTipLdkRlaadgrglq~v~INdnFaKlseALy~adrKAR 295 (506)
T KOG2441|consen 250 WKNPKG---YTIPLDKRLAADGRGLQDVHINDNFAKLSEALYIADRKAR 295 (506)
T ss_pred CcCCCC---ceecchhhhhhccCCcccceecccHHHHHHHHHHHHHHHH
Confidence 444 55 59999985543 367889999999999876553
Done!