Query 026165
Match_columns 242
No_of_seqs 25 out of 27
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mud_A DNA repair protein XRCC 94.6 0.32 1.1E-05 41.5 10.5 122 38-180 33-164 (175)
2 3w03_C DNA repair protein XRCC 94.4 2.1 7.3E-05 36.6 15.4 131 22-162 32-173 (184)
3 1ik9_A DNA repair protein XRCC 93.3 1.8 6.3E-05 37.2 13.0 63 24-89 14-78 (213)
4 3q4f_C DNA repair protein XRCC 89.0 7.2 0.00025 33.7 12.2 129 24-162 43-182 (186)
5 2y3w_A SAS6, spindle assembly 58.5 64 0.0022 26.8 9.1 94 39-136 46-157 (182)
6 2z5i_A TM, general control pro 42.3 19 0.00066 24.8 2.9 39 151-193 12-50 (52)
7 2y3v_A SAS6, spindle assembly 34.3 1.5E+02 0.0052 24.0 7.5 95 39-136 46-157 (159)
8 2llh_A Nucleophosmin; nucleola 35.8 11 0.00038 28.3 0.0 34 55-88 21-59 (74)
9 2zet_C Melanophilin; complex, 29.1 85 0.0029 25.5 5.2 57 115-180 7-63 (153)
10 1r8s_E ARNO; protein transport 28.1 15 0.00052 31.3 0.5 54 40-95 143-199 (203)
11 1t10_A GPI, glucose-6-phosphat 25.5 44 0.0015 33.0 3.3 51 68-118 202-264 (605)
12 1ku1_A ARF guanine-nucleotide 23.9 21 0.00073 30.9 0.7 55 40-95 169-225 (230)
13 2x4k_A 4-oxalocrotonate tautom 23.8 1.1E+02 0.0039 19.0 4.1 31 115-148 2-32 (63)
14 2o2c_A GPI, glucose-6-phosphat 22.6 46 0.0016 32.9 2.8 50 68-117 203-264 (613)
15 3fwb_B Nuclear mRNA export pro 22.5 61 0.0021 22.8 2.7 18 132-149 8-25 (55)
16 2wu8_A Glucose-6-phosphate iso 21.9 49 0.0017 32.1 2.8 48 68-115 149-208 (549)
17 1vf6_C Maguk P55 subfamily mem 21.5 1E+02 0.0035 23.0 3.9 34 141-174 18-53 (72)
18 2cxn_A Glucose-6-phosphate iso 20.4 76 0.0026 30.9 3.8 48 68-115 155-214 (557)
19 1yel_A AT1G16640; CESG, protei 20.2 49 0.0017 24.2 1.9 47 41-95 41-87 (104)
No 1
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=94.56 E-value=0.32 Score=41.55 Aligned_cols=122 Identities=17% Similarity=0.283 Sum_probs=87.3
Q ss_pred CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCccceeeeeee
Q 026165 38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK 112 (242)
Q Consensus 38 ~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS-----~~VKL~L~~~s~s~Ga~~akLVAqK 112 (242)
+.+.|..||-| ++|....|-+++..+-|++|- --..|++-++-.|-+ ++-++.|.+. .-.+-=.|
T Consensus 33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek 102 (175)
T 3mud_A 33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK 102 (175)
T ss_dssp GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence 66899999999 579999999999999998876 467899999999933 4788888654 22232233
Q ss_pred cCCCceeEEee-----cccccchHHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026165 113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (242)
Q Consensus 113 aKGmPrItI~L-----~kl~~saasD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (242)
. +.-++..| ..+...| ++|-.|.- -+.| ...+=|..+.+|+..|..||+++..||..
T Consensus 103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455655 7777755 44443322 1222 23344688899999999999999988876
No 2
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=94.41 E-value=2.1 Score=36.59 Aligned_cols=131 Identities=16% Similarity=0.225 Sum_probs=85.9
Q ss_pred CCCccceEEEEeC-CC-CCCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 026165 22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL 94 (242)
Q Consensus 22 s~~l~PfLFh~~A-~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~V-----KL~L 94 (242)
|-+-.|.+..+.= +| .+...|.+||-+ ++|.+..|-+++..+-+++|- .-++|++-|+.+|-+++- ++-+
T Consensus 32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~ 108 (184)
T 3w03_C 32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF 108 (184)
T ss_dssp TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence 4455666666654 33 367999999999 789999999999998888654 778999999999965443 5555
Q ss_pred cCCCCCCCccceeeeeeec-CCCc--eeEEeecccccch-HHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHH
Q 026165 95 EGHSNADGAAYAKIVAQKS-KGMP--RISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (242)
Q Consensus 95 ~~~s~s~Ga~~akLVAqKa-KGmP--rItI~L~kl~~sa-asD~manlSl~Lf~afrs~q~~~~~eqe~~s~ 162 (242)
.+ ...++.--|. +++- .=+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus 109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2355544444 3322 1147788887755 23335666666666665555555555555443
No 3
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=93.28 E-value=1.8 Score=37.17 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=49.9
Q ss_pred CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhccccc
Q 026165 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED 89 (242)
Q Consensus 24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~ 89 (242)
+-..++.|+...+. .+++|++||-+ +.|.++.+-+++...-+. -+++-.+|++-+...|..++
T Consensus 14 ~~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~ 78 (213)
T 1ik9_A 14 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA 78 (213)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred CCCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence 33567788887653 78999999985 789999999999854444 47899999999999998883
No 4
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=89.01 E-value=7.2 Score=33.73 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=90.6
Q ss_pred CccceEEEEeCCCC--CCeEEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 026165 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (242)
Q Consensus 24 ~l~PfLFh~~A~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~asl-----sS~~VKL~L~~ 96 (242)
+..+.+..+.--.. +.+.|..||-| ++|.+..|-+++..+-|++|- --..|++-|+-+| ..++-++.|.+
T Consensus 43 p~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~ 119 (186)
T 3q4f_C 43 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 119 (186)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECT
T ss_pred CCccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 34445555554443 67999999999 579999999999999999876 4678999999999 56688888875
Q ss_pred CCCCCCccceeeeeeec-CCC--ceeEEeecccccchH-HHHHHHhhHHHHHHHHHHhHHhHHHHHHHHH
Q 026165 97 HSNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (242)
Q Consensus 97 ~s~s~Ga~~akLVAqKa-KGm--PrItI~L~kl~~saa-sD~manlSl~Lf~afrs~q~~~~~eqe~~s~ 162 (242)
+ ...+.=.|. |++ .+=++.|.++..-+. ..-|-+.+|.=-..++..-+++.+|-||.++
T Consensus 120 e-------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 120 E-------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp T-------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444444443 443 334566777776443 3444556777777777777777777777654
No 5
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=58.52 E-value=64 Score=26.76 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=65.3
Q ss_pred CeEEEEee-----ccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhc----cc---ccceEeecCCCCC---CCc
Q 026165 39 HLLIQVTD-----FRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI----KS---EDVKLILEGHSNA---DGA 103 (242)
Q Consensus 39 hL~v~vTD-----fHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~asl----sS---~~VKL~L~~~s~s---~Ga 103 (242)
.|+|.+|| || ....++-++-+.||.+=++==.|.+|...|..-| ++ ..+++++.-..++ +|
T Consensus 46 ~l~ieLTdd~D~fFl---Y~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~- 121 (182)
T 2y3w_A 46 DLVVRLTDDTDLYFL---YNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDH- 121 (182)
T ss_dssp EEEEEEEETTEEEEE---EEEEEEHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEEECCCSSSC-
T ss_pred EEEEEECcCCCCcEE---EEEEeCHHHHHHHHHHcCeeeeHHHhHHHHHHHHHHHhccccccCceEEEEEeeccccCCC-
Confidence 39999998 44 4567888999999999999999999987766544 42 4455555432222 33
Q ss_pred cceee--eeeec-CCCceeEEeecccccchHHHHHH
Q 026165 104 AYAKI--VAQKS-KGMPRISISLTRLTGSAATEAMA 136 (242)
Q Consensus 104 ~~akL--VAqKa-KGmPrItI~L~kl~~saasD~ma 136 (242)
..|+| |-.-. |=+..+++++....+.+...-++
T Consensus 122 ~~~~L~~vE~~~FK~l~hLsL~f~~a~d~~ik~yLa 157 (182)
T 2y3w_A 122 SPSNLNIVETNADKHLTHLSLKLLPGSDTDIKKYLA 157 (182)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEEECCHHHHHHHHH
T ss_pred CeEEEEEEEeCCCcEEEEEEEEeecCCHHHHHHHHH
Confidence 23444 33222 88999999999988876666555
No 6
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.28 E-value=19 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhhcC
Q 026165 151 TLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMN 193 (242)
Q Consensus 151 ~~~~~eqe~~s~L~~~L~sEKekne~iQ~q~~ss~rqKlqk~n 193 (242)
.++.+=|..+.+|+..|.+||+|+..|+.. ..|=|+.++
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~e----LD~tl~el~ 50 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEE----LDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHh
Confidence 345566788999999999999999888776 235555443
No 7
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.92A {Danio rerio}
Probab=34.31 E-value=1.5e+02 Score=24.01 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=65.5
Q ss_pred CeEEEEee-----ccccchhhcccccchhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-
Q 026165 39 HLLIQVTD-----FRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG- 102 (242)
Q Consensus 39 hL~v~vTD-----fHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~a----slsS---~~VKL~L~~~s~s---~G- 102 (242)
.|+|.+|| || ....++-++-+.||.+=++==.|.+|.+.|.. |.++ ...++++.-..++ +|
T Consensus 46 ~l~ieLT~~~D~fFl---Y~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~ 122 (159)
T 2y3v_A 46 DLVVRLTDDTDLYFL---YNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHS 122 (159)
T ss_dssp EEEEEEEETTEEEEE---EEEEECHHHHHHHHHHHTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEECSSCTTSCC
T ss_pred EEEEEECcCCCCcEE---EEEEeCHHHHHHHHHhcceeeeHHHhHHHHHHHHHHHHcccccCCcEEEEEEeecccccCCC
Confidence 39999998 44 45678889999999999999999999877665 4442 3456555532221 33
Q ss_pred ccceeeeeeec-CCCceeEEeecccccchHHHHHH
Q 026165 103 AAYAKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (242)
Q Consensus 103 a~~akLVAqKa-KGmPrItI~L~kl~~saasD~ma 136 (242)
...-.+|=+-. |=+..+++++....+.+...-+|
T Consensus 123 ~~~L~~vE~~eFK~l~hLsL~f~~a~d~~ik~yLa 157 (159)
T 2y3v_A 123 PSNLNIVETNAFKHLTHLSLKLLPGSDTDIKKYLA 157 (159)
T ss_dssp CEEEEEEECCSSCCEEEEEEEEEECCHHHHHHHHT
T ss_pred cEEEEEEEcCCccEEEEEEEEeecCCHHHHHHHhh
Confidence 22333333333 88999999999988877665554
No 8
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=35.81 E-value=11 Score=28.34 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=25.6
Q ss_pred cccccchh-hhHhhhcCCCChHH----HHHHHHHhcccc
Q 026165 55 KRSVLQLD-DMRDEIGIGGSWSE----FIDYVVASIKSE 88 (242)
Q Consensus 55 slSv~~Le-DlRD~VGIGGSWsd----FldYl~aslsS~ 88 (242)
..||+++- .|+-.|.=|||.+- |.+|+.+||.=-
T Consensus 21 pssvedIKaKmqasieKg~slPKvE~KF~NyvKn~F~mt 59 (74)
T 2llh_A 21 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMT 59 (74)
Confidence 34555554 45668888999987 999999999743
No 9
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.06 E-value=85 Score=25.53 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=36.0
Q ss_pred CCceeEEeecccccchHHHHHHHhhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026165 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (242)
Q Consensus 115 GmPrItI~L~kl~~saasD~manlSl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (242)
+|+.. +.|..|++--. +.| + +.+...++.-..|++|+.+|...|..++.|.+++..+
T Consensus 7 ~m~~~-~dLs~LteeEr-~~I----l---~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~ 63 (153)
T 2zet_C 7 GMGKR-LDLSTLTDEEA-EHV----W---AVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDT 63 (153)
T ss_dssp ----C-CCCTTSCHHHH-HHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccC-CCcccCCHHHH-HHH----H---HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45532 66777776443 222 2 2334566666789999999999998887788776554
No 10
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=28.12 E-value=15 Score=31.31 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=39.1
Q ss_pred eEEEEeeccccchhhcccccchhhhHhhhcC--CCChH-HHHHHHHHhcccccceEeec
Q 026165 40 LLIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--GGSWS-EFIDYVVASIKSEDVKLILE 95 (242)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~LeDlRD~VGI--GGSWs-dFldYl~aslsS~~VKL~L~ 95 (242)
|.++=||+|+-.-...+|.++- +|.--|| |+.++ ||+.++..++++...++.-+
T Consensus 143 iImLNTDlHn~~vk~kMt~~~F--i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d 199 (203)
T 1r8s_E 143 VIMLNTDLHNPNVRDKMGLERF--VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED 199 (203)
T ss_dssp HHHHHHHHHCTTCCSCCCHHHH--HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred HHHhcccccCcccccccCHHHH--HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccC
Confidence 3445599998766778887764 3344456 55565 99999999999999886543
No 11
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2
Probab=25.50 E-value=44 Score=32.97 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=28.8
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCccceeeeeeecCCCce
Q 026165 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKGMPR 118 (242)
Q Consensus 68 VGIGGSWsd--FldYl~aslsS~~VKL~L~~~s~----------s~Ga~~akLVAqKaKGmPr 118 (242)
||||||.-- .+.+.......+.+++.+-.+-+ -++.++.=+|+-|+.+.++
T Consensus 202 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGtT~E 264 (605)
T 1t10_A 202 IGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQE 264 (605)
T ss_dssp ECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEEEEECSSSCCHH
T ss_pred EeccchHHHHHHHHHHhhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCChh
Confidence 799999854 33333333334468888874211 2234556667777755443
No 12
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=23.94 E-value=21 Score=30.92 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.6
Q ss_pred eEEEEeeccccchhhcccccchh-hhHhhhcCCCCh-HHHHHHHHHhcccccceEeec
Q 026165 40 LLIQVTDFRSNTWEAKRSVLQLD-DMRDEIGIGGSW-SEFIDYVVASIKSEDVKLILE 95 (242)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~Le-DlRD~VGIGGSW-sdFldYl~aslsS~~VKL~L~ 95 (242)
|.++=||+|+-.=...+|.++-- ++| -|..|..+ .||++.+..+++++++++-=+
T Consensus 169 iImLNTDlHnp~vk~kMT~~~FikN~r-g~n~g~d~p~e~L~~iY~~I~~~ei~~~ee 225 (230)
T 1ku1_A 169 IIMLNTDLHNPQVKEHMSFEDYSGNLK-GCCNHKDFPFWYLDRVYCSIRDKEIVMPEE 225 (230)
T ss_dssp HHHHHHHHTCTTCSSCCCHHHHHHHTT-TCBTTBCCCHHHHHHHHHHHHHSCCCCC--
T ss_pred HHHHhhhhccccccCCCCHHHHHHHhh-cccCCCCCCHHHHHHHHHHHHhCcccCCcc
Confidence 45566999987666677776543 333 23345556 589999999999999876433
No 13
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.78 E-value=1.1e+02 Score=18.99 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCceeEEeecccccchHHHHHHHhhHHHHHHHHH
Q 026165 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (242)
Q Consensus 115 GmPrItI~L~kl~~saasD~manlSl~Lf~afrs 148 (242)
.||.|+|.+.. +. ..+....|+-++++++..
T Consensus 2 ~MP~i~i~~~~--g~-s~e~k~~l~~~l~~~l~~ 32 (63)
T 2x4k_A 2 MMPIVNVKLLE--GR-SDEQLKNLVSEVTDAVEK 32 (63)
T ss_dssp CCCEEEEEEES--CC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 39999998764 33 345567777777777743
No 14
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A
Probab=22.63 E-value=46 Score=32.89 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=28.2
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCccceeeeeeecCCCc
Q 026165 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKGMP 117 (242)
Q Consensus 68 VGIGGSWsd--FldYl~aslsS~~VKL~L~~~s~----------s~Ga~~akLVAqKaKGmP 117 (242)
||||||.-- .+.+.......+.+++.+-.+-+ -++.++.=+|+-|+.+.+
T Consensus 203 IGIGGS~LGp~~v~eaL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGTT~ 264 (613)
T 2o2c_A 203 IGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQ 264 (613)
T ss_dssp ECCGGGTHHHHHHHHHTGGGSCTTSEEEEECCSSHHHHHHHHHHCCGGGEEEEEECSSSCCH
T ss_pred EeccchHHHHHHHHHHhhhhccCCceEEEEccCCHHHHHHHHhcCCCCCEEEEEEeCCCCCh
Confidence 799999854 33333333334468888874211 224456666777775443
No 15
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=22.46 E-value=61 Score=22.80 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHhhHHHHHHHHHH
Q 026165 132 TEAMAKLSLELFTAFRSM 149 (242)
Q Consensus 132 sD~manlSl~Lf~afrs~ 149 (242)
..+|.+||=+||.||-+-
T Consensus 8 ~~iI~sLs~eLy~AFihE 25 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFLHE 25 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999654
No 16
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}
Probab=21.86 E-value=49 Score=32.10 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=27.2
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCccceeeeeeecCC
Q 026165 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKG 115 (242)
Q Consensus 68 VGIGGSWsd--FldYl~aslsS~~VKL~L~~~s~----------s~Ga~~akLVAqKaKG 115 (242)
||||||.-. .+.+.........+++.+-.+-+ -++.++.=+|+-|+.+
T Consensus 149 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~~~~~l~~l~~e~TLvIViSKSGt 208 (549)
T 2wu8_A 149 IGIGGSDLGPVMVYQALRHYADAGISARFVSNVDPADLIATLADLDPATTLFIVASKTFS 208 (549)
T ss_dssp ECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSC
T ss_pred EeccchHHHHHHHHHHHHhhccCCCeEEEEccCCHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence 799999865 33333323333457787774211 2244566677777653
No 17
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=21.51 E-value=1e+02 Score=23.04 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHh--HHHHHHHHHHHHHHHHHHhhh
Q 026165 141 ELFTAFRSMQTLI--VQEQERCLQLEKEAAAEKERN 174 (242)
Q Consensus 141 ~Lf~afrs~q~~~--~~eqe~~s~L~~~L~sEKekn 174 (242)
+||.+++.+|--+ +++||-+.=|++-+..+-=++
T Consensus 18 el~sSLK~iq~~L~DsQSQeDi~lllqL~~~~DFQ~ 53 (72)
T 1vf6_C 18 DLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQN 53 (72)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence 6899999999888 999999999988877654443
No 18
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=20.43 E-value=76 Score=30.85 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=26.2
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCccceeeeeeecCC
Q 026165 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKG 115 (242)
Q Consensus 68 VGIGGSWsd--FldYl~aslsS~~VKL~L~~~s~----------s~Ga~~akLVAqKaKG 115 (242)
||||||.-. .+.+.........+++.+-.+-+ -++.++.=+|+-|+.+
T Consensus 155 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~L~~e~TLvIViSKSGt 214 (557)
T 2cxn_A 155 IGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFT 214 (557)
T ss_dssp ECCGGGTHHHHHHHHHTGGGGTTSCEEEEECCSSHHHHHHHHTTCCTTTEEEEEECSSSC
T ss_pred EeccchHHHHHHHHHHHhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEcCCCC
Confidence 799999865 23332222222357777773311 2244566667766643
No 19
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=20.18 E-value=49 Score=24.22 Aligned_cols=47 Identities=11% Similarity=0.385 Sum_probs=35.5
Q ss_pred EEEEeeccccchhhcccccchhhhHhhhcCCCChHHHHHHHHHhcccccceEeec
Q 026165 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILE 95 (242)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSWsdFldYl~aslsS~~VKL~L~ 95 (242)
.|.+.|-.-.+|+-.++.. .+.+.+.++|.+|+. ...|+-||+ |+|+
T Consensus 41 ~v~L~~~~G~~W~v~~~~~-----~~~~~l~~GW~~Fv~--~~~L~~GD~-lvF~ 87 (104)
T 1yel_A 41 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVK--DNNLEDGKY-LQFI 87 (104)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHH--HHTCCTTCE-EEEE
T ss_pred EEEEECCCCCEEEEEEEEE-----CCcEEEccChHHHHH--HcCCCCCCE-EEEE
Confidence 5677788889999888753 357899999999985 357888884 3444
Done!