Query 026166
Match_columns 242
No_of_seqs 137 out of 1202
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 9E-54 2E-58 368.6 24.1 217 9-227 1-220 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.7E-51 1.2E-55 346.1 22.6 224 6-233 9-238 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 7.5E-50 1.6E-54 333.3 18.3 188 9-219 3-196 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.6E-48 3.4E-53 341.1 23.8 216 6-225 10-235 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 3.9E-48 8.4E-53 335.2 23.5 210 11-226 1-219 (317)
6 PRK10625 tas putative aldo-ket 100.0 1.2E-47 2.5E-52 335.9 24.3 214 9-226 1-247 (346)
7 cd06660 Aldo_ket_red Aldo-keto 100.0 1.5E-46 3.2E-51 320.6 23.9 208 11-226 1-212 (285)
8 KOG1577 Aldo/keto reductase fa 100.0 1.7E-47 3.7E-52 319.4 17.4 186 11-220 6-215 (300)
9 PLN02587 L-galactose dehydroge 100.0 1E-46 2.2E-51 325.9 21.6 206 11-224 1-216 (314)
10 PRK10376 putative oxidoreducta 100.0 2.6E-44 5.7E-49 307.6 23.2 202 12-218 10-218 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.7E-44 8E-49 305.5 19.9 199 23-229 1-204 (283)
12 PRK14863 bifunctional regulato 100.0 7.1E-44 1.5E-48 304.7 17.9 191 18-223 2-202 (292)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.1E-43 4.5E-48 298.7 20.4 180 20-222 2-188 (267)
14 COG4989 Predicted oxidoreducta 100.0 3.1E-43 6.7E-48 283.0 14.3 210 9-222 1-218 (298)
15 KOG1576 Predicted oxidoreducta 100.0 4.5E-42 9.7E-47 278.4 15.0 229 8-240 21-257 (342)
16 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.3E-41 5.1E-46 287.2 19.7 183 11-219 6-193 (275)
17 COG1453 Predicted oxidoreducta 100.0 4.9E-39 1.1E-43 271.8 17.8 205 9-223 1-213 (391)
18 KOG3023 Glutamate-cysteine lig 98.4 6.1E-07 1.3E-11 72.8 6.4 72 142-214 155-228 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 94.8 1.6 3.5E-05 37.7 14.5 156 40-218 134-291 (316)
20 cd03316 MR_like Mandelate race 93.1 4.6 9.9E-05 35.5 14.1 155 40-214 139-299 (357)
21 cd03315 MLE_like Muconate lact 91.1 8.3 0.00018 32.3 15.6 158 40-219 85-244 (265)
22 PF07021 MetW: Methionine bios 89.6 5.9 0.00013 31.8 10.0 151 45-219 4-172 (193)
23 PRK00164 moaA molybdenum cofac 88.8 15 0.00033 31.8 13.4 151 39-210 49-227 (331)
24 PRK08392 hypothetical protein; 88.4 12 0.00027 30.3 11.8 151 43-210 15-178 (215)
25 cd03323 D-glucarate_dehydratas 87.5 21 0.00045 32.1 14.0 151 40-215 168-321 (395)
26 cd03174 DRE_TIM_metallolyase D 87.0 5.7 0.00012 33.0 9.0 106 106-213 15-135 (265)
27 cd03318 MLE Muconate Lactonizi 86.5 22 0.00048 31.3 12.9 151 40-213 142-297 (365)
28 TIGR02370 pyl_corrinoid methyl 85.6 16 0.00035 29.3 10.6 145 40-207 10-164 (197)
29 cd03321 mandelate_racemase Man 85.4 22 0.00048 31.2 12.3 152 40-212 141-294 (355)
30 cd03322 rpsA The starvation se 85.3 26 0.00056 30.9 13.9 145 40-213 126-272 (361)
31 COG1140 NarY Nitrate reductase 85.0 0.43 9.3E-06 41.9 1.2 54 155-208 263-317 (513)
32 COG0135 TrpF Phosphoribosylant 84.6 7.7 0.00017 31.6 8.2 82 120-210 18-102 (208)
33 TIGR02534 mucon_cyclo muconate 84.5 28 0.00061 30.7 13.0 150 44-215 145-298 (368)
34 PRK14017 galactonate dehydrata 83.8 31 0.00066 30.7 12.5 155 40-214 124-287 (382)
35 COG1748 LYS9 Saccharopine dehy 83.6 7.5 0.00016 34.8 8.4 83 40-139 77-159 (389)
36 PRK13958 N-(5'-phosphoribosyl) 83.2 5.4 0.00012 32.4 6.8 66 119-186 16-82 (207)
37 cd00308 enolase_like Enolase-s 82.9 13 0.00027 30.5 9.1 88 128-219 120-209 (229)
38 PRK08609 hypothetical protein; 82.9 43 0.00094 31.7 13.7 150 44-210 351-522 (570)
39 PF05690 ThiG: Thiazole biosyn 82.8 11 0.00024 31.2 8.4 168 21-212 8-181 (247)
40 PRK01222 N-(5'-phosphoribosyl) 82.3 10 0.00022 30.8 8.2 66 120-187 19-85 (210)
41 PRK00208 thiG thiazole synthas 81.7 30 0.00065 29.0 14.4 166 21-212 10-181 (250)
42 COG3172 NadR Predicted ATPase/ 80.9 14 0.00029 29.1 7.8 105 46-156 69-185 (187)
43 cd03327 MR_like_2 Mandelate ra 80.4 39 0.00085 29.5 13.0 153 40-212 120-279 (341)
44 PRK13796 GTPase YqeH; Provisio 78.4 48 0.001 29.4 12.9 124 39-175 54-181 (365)
45 TIGR01502 B_methylAsp_ase meth 78.1 47 0.001 30.0 11.6 87 128-215 264-357 (408)
46 cd03328 MR_like_3 Mandelate ra 76.9 52 0.0011 28.9 12.8 152 40-213 138-293 (352)
47 PRK10550 tRNA-dihydrouridine s 76.7 50 0.0011 28.6 13.8 132 40-185 73-223 (312)
48 cd03325 D-galactonate_dehydrat 76.3 53 0.0012 28.8 15.1 154 40-213 123-285 (352)
49 cd07944 DRE_TIM_HOA_like 4-hyd 76.1 42 0.0009 28.3 10.3 105 105-212 15-128 (266)
50 cd02070 corrinoid_protein_B12- 76.1 39 0.00084 27.1 11.8 145 40-207 9-162 (201)
51 cd04728 ThiG Thiazole synthase 76.0 46 0.00099 27.9 14.4 166 21-212 9-181 (248)
52 PLN02428 lipoic acid synthase 75.4 50 0.0011 29.2 10.8 156 40-217 131-325 (349)
53 TIGR01928 menC_lowGC/arch o-su 75.3 54 0.0012 28.4 14.8 154 40-219 132-287 (324)
54 cd07943 DRE_TIM_HOA 4-hydroxy- 74.4 33 0.00072 28.7 9.3 105 106-212 18-131 (263)
55 PRK05692 hydroxymethylglutaryl 73.3 8.5 0.00018 32.9 5.4 102 106-210 22-137 (287)
56 TIGR03247 glucar-dehydr glucar 73.2 75 0.0016 29.0 14.0 155 40-214 180-337 (441)
57 TIGR00735 hisF imidazoleglycer 72.9 45 0.00097 27.8 9.6 90 117-209 161-253 (254)
58 PRK06294 coproporphyrinogen II 72.6 32 0.0007 30.5 9.1 27 107-134 167-193 (370)
59 COG2874 FlaH Predicted ATPases 71.5 48 0.001 27.4 8.9 138 12-165 19-167 (235)
60 TIGR01278 DPOR_BchB light-inde 70.4 76 0.0017 29.5 11.4 103 114-216 102-243 (511)
61 cd07943 DRE_TIM_HOA 4-hydroxy- 70.1 64 0.0014 27.0 16.1 24 39-62 19-42 (263)
62 PRK13803 bifunctional phosphor 69.8 32 0.00068 32.9 8.9 67 121-187 20-87 (610)
63 TIGR00676 fadh2 5,10-methylene 69.8 67 0.0015 27.1 11.7 150 42-209 15-186 (272)
64 COG2873 MET17 O-acetylhomoseri 68.5 89 0.0019 28.0 11.8 144 27-223 48-194 (426)
65 PRK15072 bifunctional D-altron 68.5 43 0.00093 30.1 9.1 83 128-214 232-316 (404)
66 TIGR02026 BchE magnesium-proto 68.2 66 0.0014 29.8 10.5 152 40-207 223-392 (497)
67 PRK13347 coproporphyrinogen II 67.7 37 0.0008 31.0 8.6 60 107-168 216-291 (453)
68 cd03314 MAL Methylaspartate am 67.3 56 0.0012 29.1 9.4 84 130-213 229-319 (369)
69 PRK09058 coproporphyrinogen II 67.2 34 0.00074 31.2 8.3 28 107-135 227-254 (449)
70 cd03317 NAAAR N-acylamino acid 67.1 87 0.0019 27.4 13.9 148 42-215 139-288 (354)
71 PRK08195 4-hyroxy-2-oxovalerat 66.4 82 0.0018 27.6 10.2 104 104-212 19-134 (337)
72 COG2069 CdhD CO dehydrogenase/ 66.2 88 0.0019 27.1 10.5 94 118-216 158-261 (403)
73 cd03329 MR_like_4 Mandelate ra 65.3 98 0.0021 27.3 13.3 152 40-212 143-298 (368)
74 PLN02363 phosphoribosylanthran 65.2 26 0.00056 29.5 6.6 72 109-186 57-129 (256)
75 COG0635 HemN Coproporphyrinoge 64.9 39 0.00085 30.6 8.1 55 21-75 148-206 (416)
76 cd06543 GH18_PF-ChiA-like PF-C 64.1 94 0.002 26.7 14.4 184 23-219 71-266 (294)
77 PLN02746 hydroxymethylglutaryl 64.1 20 0.00043 31.7 5.9 98 107-210 65-179 (347)
78 PRK12928 lipoyl synthase; Prov 63.6 64 0.0014 27.7 8.8 77 140-217 185-282 (290)
79 PRK02901 O-succinylbenzoate sy 62.6 83 0.0018 27.5 9.5 82 129-218 162-244 (327)
80 TIGR01927 menC_gamma/gm+ o-suc 62.2 82 0.0018 27.1 9.4 86 128-219 183-270 (307)
81 cd03326 MR_like_1 Mandelate ra 62.1 1.2E+02 0.0026 27.2 12.4 147 40-208 160-313 (385)
82 PRK00912 ribonuclease P protei 61.9 89 0.0019 25.7 9.8 140 41-210 15-171 (237)
83 TIGR01496 DHPS dihydropteroate 61.5 97 0.0021 26.0 11.2 100 107-213 20-125 (257)
84 PRK05283 deoxyribose-phosphate 61.5 79 0.0017 26.7 8.7 81 40-129 144-227 (257)
85 cd00405 PRAI Phosphoribosylant 61.4 49 0.0011 26.4 7.4 40 128-171 74-113 (203)
86 PF13378 MR_MLE_C: Enolase C-t 61.0 14 0.00031 26.3 3.8 51 164-214 3-54 (111)
87 PF00682 HMGL-like: HMGL-like 60.9 90 0.002 25.4 11.1 121 39-176 11-144 (237)
88 TIGR00126 deoC deoxyribose-pho 60.7 91 0.002 25.4 9.0 73 40-127 130-205 (211)
89 cd00740 MeTr MeTr subgroup of 60.0 1E+02 0.0022 25.8 11.3 106 107-218 23-131 (252)
90 TIGR03217 4OH_2_O_val_ald 4-hy 59.6 1.2E+02 0.0026 26.5 10.6 103 104-212 18-133 (333)
91 PF00682 HMGL-like: HMGL-like 59.1 52 0.0011 26.9 7.3 97 107-209 11-124 (237)
92 cd04740 DHOD_1B_like Dihydroor 59.0 1.1E+02 0.0024 25.9 13.9 151 40-207 100-286 (296)
93 PF14871 GHL6: Hypothetical gl 58.8 22 0.00048 26.7 4.6 25 192-216 43-67 (132)
94 PRK14461 ribosomal RNA large s 58.8 1.3E+02 0.0029 26.8 10.1 86 131-216 232-351 (371)
95 PF04476 DUF556: Protein of un 58.5 1.1E+02 0.0023 25.5 10.6 151 40-209 9-183 (235)
96 PRK07945 hypothetical protein; 57.3 1.3E+02 0.0029 26.3 16.4 154 41-210 110-288 (335)
97 TIGR00048 radical SAM enzyme, 57.2 39 0.00085 29.9 6.6 87 130-216 218-332 (355)
98 PRK00730 rnpA ribonuclease P; 56.5 76 0.0016 24.1 7.1 63 83-155 46-110 (138)
99 PRK09427 bifunctional indole-3 56.2 36 0.00079 31.2 6.3 64 120-187 273-337 (454)
100 PLN00191 enolase 55.9 1E+02 0.0023 28.3 9.3 133 71-212 245-394 (457)
101 CHL00076 chlB photochlorophyll 55.8 1.8E+02 0.0038 27.2 11.6 89 128-216 117-248 (513)
102 PRK12331 oxaloacetate decarbox 55.8 1.7E+02 0.0036 26.9 11.0 103 106-210 22-140 (448)
103 PF04481 DUF561: Protein of un 55.4 56 0.0012 26.9 6.5 105 40-156 25-145 (242)
104 TIGR00538 hemN oxygen-independ 55.1 85 0.0018 28.6 8.7 60 107-168 215-290 (455)
105 PF03102 NeuB: NeuB family; I 55.0 99 0.0022 25.8 8.3 117 39-174 53-188 (241)
106 PRK00077 eno enolase; Provisio 55.0 1.7E+02 0.0036 26.6 10.7 129 74-211 221-361 (425)
107 COG2896 MoaA Molybdenum cofact 54.8 58 0.0012 28.5 7.0 118 39-177 43-175 (322)
108 PRK00507 deoxyribose-phosphate 54.4 78 0.0017 26.0 7.5 75 40-126 134-208 (221)
109 cd04731 HisF The cyclase subun 54.2 1.2E+02 0.0026 24.8 10.4 145 40-205 82-243 (243)
110 PRK05414 urocanate hydratase; 54.0 33 0.00072 31.8 5.6 140 17-177 94-254 (556)
111 PRK13361 molybdenum cofactor b 53.9 1.5E+02 0.0032 25.7 14.4 130 39-190 45-194 (329)
112 PLN02540 methylenetetrahydrofo 53.8 2E+02 0.0044 27.3 13.4 151 41-208 14-197 (565)
113 smart00642 Aamy Alpha-amylase 53.8 22 0.00048 27.7 4.0 20 196-215 73-92 (166)
114 TIGR01228 hutU urocanate hydra 53.7 32 0.0007 31.7 5.4 141 16-177 84-245 (545)
115 TIGR00677 fadh2_euk methylenet 53.5 1.4E+02 0.0031 25.4 12.5 152 41-209 15-190 (281)
116 cd03320 OSBS o-Succinylbenzoat 53.4 1.3E+02 0.0029 25.0 12.1 86 128-218 153-239 (263)
117 PRK07003 DNA polymerase III su 53.3 2.4E+02 0.0052 28.0 12.9 94 109-208 101-197 (830)
118 TIGR03471 HpnJ hopanoid biosyn 52.5 1.7E+02 0.0038 26.7 10.3 92 116-209 289-394 (472)
119 TIGR02090 LEU1_arch isopropylm 52.2 1.7E+02 0.0037 25.9 10.1 24 40-63 20-43 (363)
120 cd07939 DRE_TIM_NifV Streptomy 52.1 1.4E+02 0.003 24.9 10.9 97 106-210 16-127 (259)
121 PF07476 MAAL_C: Methylasparta 52.0 56 0.0012 27.0 6.0 102 107-211 86-194 (248)
122 PRK04452 acetyl-CoA decarbonyl 52.0 1.6E+02 0.0034 25.8 9.2 93 118-215 83-184 (319)
123 PRK14463 ribosomal RNA large s 51.5 1.7E+02 0.0037 25.8 9.8 93 131-223 211-337 (349)
124 TIGR02666 moaA molybdenum cofa 51.2 1.6E+02 0.0035 25.4 13.0 130 39-190 43-193 (334)
125 COG1751 Uncharacterized conser 51.1 63 0.0014 25.1 5.8 72 40-125 12-84 (186)
126 COG0001 HemL Glutamate-1-semia 50.7 2E+02 0.0043 26.3 12.4 140 41-211 71-239 (432)
127 COG2089 SpsE Sialic acid synth 50.4 1.8E+02 0.0038 25.6 11.6 119 39-176 87-224 (347)
128 TIGR03822 AblA_like_2 lysine-2 49.7 1.7E+02 0.0038 25.3 12.4 120 40-176 120-252 (321)
129 PRK08195 4-hyroxy-2-oxovalerat 49.6 1.8E+02 0.0039 25.5 16.8 24 39-62 22-45 (337)
130 cd02930 DCR_FMN 2,4-dienoyl-Co 49.0 1.9E+02 0.004 25.4 13.6 98 83-185 201-305 (353)
131 cd04742 NPD_FabD 2-Nitropropan 48.7 85 0.0018 28.5 7.3 89 119-214 6-103 (418)
132 TIGR01060 eno phosphopyruvate 48.6 2.1E+02 0.0046 26.0 10.8 80 128-211 278-362 (425)
133 PF05368 NmrA: NmrA-like famil 48.3 83 0.0018 25.3 6.9 85 127-219 22-107 (233)
134 cd07948 DRE_TIM_HCS Saccharomy 48.3 1.7E+02 0.0036 24.7 12.4 24 40-63 20-43 (262)
135 COG2355 Zn-dependent dipeptida 48.1 1.8E+02 0.0039 25.3 9.0 107 42-165 149-260 (313)
136 cd07948 DRE_TIM_HCS Saccharomy 47.5 56 0.0012 27.5 5.8 99 106-212 18-131 (262)
137 TIGR00035 asp_race aspartate r 47.3 1.6E+02 0.0034 24.1 9.4 68 108-176 15-95 (229)
138 CHL00162 thiG thiamin biosynth 47.1 1.8E+02 0.0038 24.7 9.5 70 107-177 81-157 (267)
139 cd00423 Pterin_binding Pterin 46.9 1.7E+02 0.0037 24.4 12.0 103 107-215 21-129 (258)
140 PRK05588 histidinol-phosphatas 46.9 1.7E+02 0.0036 24.3 9.2 106 41-162 15-143 (255)
141 PRK14459 ribosomal RNA large s 46.5 1.6E+02 0.0034 26.3 8.7 87 130-216 241-358 (373)
142 PRK14462 ribosomal RNA large s 46.5 2.1E+02 0.0046 25.4 10.3 85 132-216 225-337 (356)
143 cd03324 rTSbeta_L-fuconate_deh 46.3 2.3E+02 0.0049 25.7 15.2 152 40-213 196-352 (415)
144 PRK09061 D-glutamate deacylase 45.8 2.3E+02 0.005 26.4 10.0 114 42-164 169-283 (509)
145 TIGR02660 nifV_homocitr homoci 45.8 2.1E+02 0.0045 25.3 9.4 24 39-62 20-43 (365)
146 PRK06015 keto-hydroxyglutarate 45.4 70 0.0015 25.9 5.8 86 108-210 14-101 (201)
147 COG2949 SanA Uncharacterized m 45.4 1.7E+02 0.0037 24.0 8.7 97 110-214 76-181 (235)
148 cd01974 Nitrogenase_MoFe_beta 45.3 2.4E+02 0.0051 25.6 10.3 109 61-183 63-191 (435)
149 COG3623 SgaU Putative L-xylulo 45.1 26 0.00056 29.2 3.2 75 16-93 65-155 (287)
150 COG4464 CapC Capsular polysacc 44.9 1.8E+02 0.0039 24.1 8.4 27 40-66 18-44 (254)
151 cd00739 DHPS DHPS subgroup of 44.9 1.9E+02 0.0041 24.3 12.1 102 107-214 21-128 (257)
152 PF01904 DUF72: Protein of unk 44.8 1.7E+02 0.0038 23.9 11.2 129 56-212 19-148 (230)
153 PRK08776 cystathionine gamma-s 44.6 2.3E+02 0.0051 25.4 10.9 87 129-219 100-188 (405)
154 PTZ00081 enolase; Provisional 44.6 2.5E+02 0.0055 25.7 10.1 97 107-212 281-382 (439)
155 TIGR02660 nifV_homocitr homoci 43.4 2.3E+02 0.0051 25.0 9.5 97 106-210 19-130 (365)
156 PF13407 Peripla_BP_4: Peripla 43.4 1.3E+02 0.0029 24.2 7.5 52 110-167 14-65 (257)
157 TIGR01182 eda Entner-Doudoroff 43.1 85 0.0018 25.5 5.9 87 108-211 18-106 (204)
158 TIGR02668 moaA_archaeal probab 41.7 2.2E+02 0.0047 24.2 12.1 146 39-206 40-213 (302)
159 PF00697 PRAI: N-(5'phosphorib 41.7 83 0.0018 25.1 5.7 82 119-210 14-96 (197)
160 COG0145 HyuA N-methylhydantoin 41.6 3.4E+02 0.0074 26.4 10.7 103 39-144 136-249 (674)
161 PF01876 RNase_P_p30: RNase P 40.8 58 0.0013 24.7 4.5 49 167-215 34-84 (150)
162 TIGR02814 pfaD_fam PfaD family 40.7 1.3E+02 0.0029 27.5 7.3 89 120-215 12-109 (444)
163 PF01118 Semialdhyde_dh: Semia 40.0 44 0.00095 24.2 3.6 28 40-67 75-102 (121)
164 PF01175 Urocanase: Urocanase; 40.0 85 0.0018 29.2 5.9 128 46-187 106-257 (546)
165 PRK09389 (R)-citramalate synth 39.6 2.9E+02 0.0062 25.7 9.6 25 39-63 21-45 (488)
166 TIGR00190 thiC thiamine biosyn 39.5 2.2E+02 0.0047 25.8 8.2 150 40-222 75-228 (423)
167 PRK15440 L-rhamnonate dehydrat 39.3 1.2E+02 0.0026 27.3 6.9 68 145-212 247-318 (394)
168 KOG1549 Cysteine desulfurase N 39.0 3E+02 0.0066 25.1 9.4 70 145-214 144-219 (428)
169 PF01081 Aldolase: KDPG and KH 39.0 62 0.0013 26.1 4.5 85 109-210 19-105 (196)
170 cd02803 OYE_like_FMN_family Ol 39.0 2.5E+02 0.0054 24.1 14.1 94 84-185 206-310 (327)
171 COG2256 MGS1 ATPase related to 38.6 2.5E+02 0.0055 25.5 8.5 106 45-169 36-144 (436)
172 TIGR03217 4OH_2_O_val_ald 4-hy 38.2 2.8E+02 0.006 24.3 16.6 24 39-62 21-44 (333)
173 PRK14453 chloramphenicol/florf 38.1 2.8E+02 0.0061 24.4 9.7 91 126-216 203-329 (347)
174 TIGR03822 AblA_like_2 lysine-2 38.1 2.7E+02 0.0058 24.1 11.8 109 108-219 120-240 (321)
175 TIGR03597 GTPase_YqeH ribosome 38.0 2.8E+02 0.0061 24.4 11.8 124 39-175 48-175 (360)
176 PRK02714 O-succinylbenzoate sy 38.0 2.7E+02 0.0058 24.1 15.1 86 128-219 192-278 (320)
177 cd02932 OYE_YqiM_FMN Old yello 38.0 2.7E+02 0.0059 24.2 13.6 95 83-185 218-319 (336)
178 PRK06740 histidinol-phosphatas 37.8 2.8E+02 0.006 24.2 13.3 25 41-65 60-84 (331)
179 COG1217 TypA Predicted membran 37.5 2.5E+02 0.0055 26.2 8.4 65 56-130 70-160 (603)
180 COG0135 TrpF Phosphoribosylant 37.4 77 0.0017 25.8 4.9 100 40-167 11-111 (208)
181 cd00248 Mth938-like Mth938-lik 37.0 1.2E+02 0.0025 21.8 5.4 52 163-214 36-87 (109)
182 PF00072 Response_reg: Respons 36.6 1.4E+02 0.003 20.4 6.5 62 123-187 39-102 (112)
183 PRK06552 keto-hydroxyglutarate 36.4 1.8E+02 0.0038 23.7 6.9 85 109-210 24-113 (213)
184 PRK14041 oxaloacetate decarbox 36.3 3.5E+02 0.0076 25.0 10.3 98 107-210 22-139 (467)
185 cd03313 enolase Enolase: Enola 36.1 3.3E+02 0.0071 24.6 11.0 130 73-211 217-361 (408)
186 PRK05628 coproporphyrinogen II 36.0 2.9E+02 0.0064 24.3 8.9 27 107-134 172-198 (375)
187 PRK09249 coproporphyrinogen II 35.9 2.3E+02 0.0049 25.9 8.3 114 45-167 151-289 (453)
188 PRK08446 coproporphyrinogen II 35.9 1.1E+02 0.0023 26.9 6.0 37 40-76 132-168 (350)
189 cd07937 DRE_TIM_PC_TC_5S Pyruv 35.6 1.9E+02 0.0041 24.4 7.3 96 113-212 23-137 (275)
190 cd07945 DRE_TIM_CMS Leptospira 35.4 2.8E+02 0.0061 23.6 16.0 114 108-223 109-233 (280)
191 PRK07379 coproporphyrinogen II 35.3 1.3E+02 0.0029 26.9 6.6 68 21-88 126-200 (400)
192 PF00762 Ferrochelatase: Ferro 35.2 1.3E+02 0.0028 26.1 6.3 89 109-215 206-297 (316)
193 PF08013 Tagatose_6_P_K: Tagat 35.0 49 0.0011 29.9 3.6 48 18-66 79-133 (424)
194 COG2200 Rtn c-di-GMP phosphodi 35.0 2.6E+02 0.0057 23.2 8.5 159 45-226 52-241 (256)
195 TIGR02026 BchE magnesium-proto 34.9 3.7E+02 0.008 24.9 10.7 49 105-156 220-268 (497)
196 COG1131 CcmA ABC-type multidru 34.9 2.6E+02 0.0056 23.8 8.1 63 111-176 140-205 (293)
197 COG2987 HutU Urocanate hydrata 34.8 94 0.002 28.5 5.3 147 9-177 87-254 (561)
198 PRK10200 putative racemase; Pr 34.6 1.9E+02 0.0041 23.7 6.9 66 107-173 14-91 (230)
199 PRK05458 guanosine 5'-monophos 34.6 3E+02 0.0064 24.1 8.3 124 79-211 17-145 (326)
200 PRK08247 cystathionine gamma-s 34.5 2.6E+02 0.0056 24.6 8.2 63 158-220 116-180 (366)
201 PRK14460 ribosomal RNA large s 34.3 3.3E+02 0.0071 24.1 10.0 104 119-223 207-344 (354)
202 PRK07328 histidinol-phosphatas 33.9 2.8E+02 0.0061 23.2 14.5 23 43-65 19-41 (269)
203 PRK14466 ribosomal RNA large s 33.8 2.5E+02 0.0055 24.8 7.8 87 130-216 210-324 (345)
204 KOG0173 20S proteasome, regula 33.6 41 0.00088 28.1 2.7 23 34-56 178-200 (271)
205 PRK13352 thiamine biosynthesis 33.5 3.1E+02 0.0067 24.9 8.3 151 40-222 75-231 (431)
206 PRK09536 btuD corrinoid ABC tr 33.4 1.4E+02 0.003 26.9 6.4 74 145-218 279-352 (402)
207 cd04734 OYE_like_3_FMN Old yel 33.4 3.3E+02 0.0072 23.8 14.7 95 83-185 205-314 (343)
208 PRK02910 light-independent pro 32.9 4.1E+02 0.0089 24.8 11.0 102 114-216 102-243 (519)
209 PRK10415 tRNA-dihydrouridine s 32.8 3.3E+02 0.0071 23.6 11.7 134 40-185 75-223 (321)
210 PF01487 DHquinase_I: Type I 3 32.7 2.7E+02 0.0058 22.5 10.4 110 40-165 73-182 (224)
211 PRK07535 methyltetrahydrofolat 32.7 3E+02 0.0065 23.1 10.9 101 107-214 22-124 (261)
212 COG1104 NifS Cysteine sulfinat 32.5 1.7E+02 0.0036 26.4 6.5 68 145-212 104-177 (386)
213 PF01053 Cys_Met_Meta_PP: Cys/ 32.3 1.8E+02 0.004 26.0 6.9 82 142-223 104-188 (386)
214 PRK02083 imidazole glycerol ph 32.1 2.9E+02 0.0063 22.8 11.7 86 120-209 162-251 (253)
215 cd07939 DRE_TIM_NifV Streptomy 31.8 3E+02 0.0065 22.8 14.8 81 141-223 137-224 (259)
216 PRK14455 ribosomal RNA large s 31.4 3.6E+02 0.0078 23.8 8.5 86 131-216 223-336 (356)
217 COG3589 Uncharacterized conser 31.4 3.7E+02 0.008 23.8 9.6 158 40-218 14-182 (360)
218 PRK11858 aksA trans-homoaconit 31.4 3.8E+02 0.0082 23.9 12.6 23 40-62 24-46 (378)
219 PRK14456 ribosomal RNA large s 31.2 3.5E+02 0.0075 24.1 8.4 86 131-216 238-352 (368)
220 PRK09282 pyruvate carboxylase 31.2 4.8E+02 0.01 25.0 9.8 102 107-210 23-140 (592)
221 TIGR01430 aden_deam adenosine 31.2 3.4E+02 0.0074 23.3 13.5 99 108-210 138-237 (324)
222 TIGR00126 deoC deoxyribose-pho 31.1 2.9E+02 0.0063 22.5 11.5 134 39-189 15-157 (211)
223 KOG1196 Predicted NAD-dependen 31.1 85 0.0018 27.3 4.3 21 141-161 290-310 (343)
224 TIGR02090 LEU1_arch isopropylm 30.7 3.2E+02 0.0069 24.2 8.1 98 105-210 17-129 (363)
225 cd02933 OYE_like_FMN Old yello 30.6 3.7E+02 0.008 23.5 14.7 94 88-185 220-313 (338)
226 TIGR00737 nifR3_yhdG putative 30.5 3.5E+02 0.0076 23.3 12.4 134 40-185 73-221 (319)
227 COG0820 Predicted Fe-S-cluster 30.5 3.9E+02 0.0084 23.7 9.1 86 130-216 215-329 (349)
228 TIGR02766 crypt_chrom_pln cryp 30.3 1.4E+02 0.003 27.5 5.9 42 114-165 54-95 (475)
229 cd01948 EAL EAL domain. This d 30.2 2.8E+02 0.0061 22.0 8.1 100 110-213 98-209 (240)
230 PRK07259 dihydroorotate dehydr 29.8 3.5E+02 0.0075 23.0 12.1 154 40-207 102-289 (301)
231 TIGR01329 cysta_beta_ly_E cyst 29.4 3.1E+02 0.0068 24.2 7.9 54 166-219 119-174 (378)
232 smart00148 PLCXc Phospholipase 29.3 2.4E+02 0.0052 21.0 6.3 21 45-65 31-51 (135)
233 TIGR01428 HAD_type_II 2-haloal 29.3 1.5E+02 0.0032 23.1 5.4 64 112-177 61-128 (198)
234 PRK11858 aksA trans-homoaconit 29.1 4.1E+02 0.009 23.6 10.9 100 105-212 21-135 (378)
235 PRK14465 ribosomal RNA large s 29.0 4E+02 0.0087 23.5 9.3 87 131-217 216-329 (342)
236 COG0159 TrpA Tryptophan syntha 29.0 3.6E+02 0.0078 22.9 8.4 19 196-214 137-155 (265)
237 cd07945 DRE_TIM_CMS Leptospira 28.9 82 0.0018 26.8 3.9 97 106-211 15-133 (280)
238 PF00388 PI-PLC-X: Phosphatidy 28.7 40 0.00087 25.4 1.9 22 45-66 29-50 (146)
239 PRK05968 hypothetical protein; 28.5 3.6E+02 0.0078 23.9 8.2 53 167-219 137-190 (389)
240 PLN02438 inositol-3-phosphate 28.3 3.7E+02 0.0081 25.1 8.1 49 109-157 206-258 (510)
241 PF01408 GFO_IDH_MocA: Oxidore 28.3 1.7E+02 0.0037 20.5 5.1 61 149-210 54-117 (120)
242 PRK05710 glutamyl-Q tRNA(Asp) 28.3 1.8E+02 0.0039 25.1 5.9 59 107-174 51-111 (299)
243 PLN02522 ATP citrate (pro-S)-l 28.2 1.1E+02 0.0025 29.2 5.0 34 64-97 228-262 (608)
244 PRK05660 HemN family oxidoredu 28.0 2.1E+02 0.0044 25.5 6.5 117 21-137 118-245 (378)
245 TIGR01163 rpe ribulose-phospha 28.0 3E+02 0.0065 21.6 9.2 99 107-209 8-107 (210)
246 cd01965 Nitrogenase_MoFe_beta_ 28.0 4.5E+02 0.0097 23.7 10.3 57 128-184 117-187 (428)
247 PLN02775 Probable dihydrodipic 27.9 2.8E+02 0.0061 23.8 6.9 58 116-177 68-125 (286)
248 cd00959 DeoC 2-deoxyribose-5-p 27.9 3.1E+02 0.0068 21.8 10.9 134 39-189 14-156 (203)
249 PF05913 DUF871: Bacterial pro 27.9 29 0.00064 30.7 1.1 157 40-216 12-179 (357)
250 PRK07094 biotin synthase; Prov 27.9 3.9E+02 0.0084 22.9 10.9 115 40-176 71-202 (323)
251 PRK08248 O-acetylhomoserine am 27.9 3.6E+02 0.0079 24.4 8.1 58 159-216 130-189 (431)
252 PRK00915 2-isopropylmalate syn 27.9 5.1E+02 0.011 24.2 10.3 24 40-63 24-47 (513)
253 COG1168 MalY Bifunctional PLP- 27.8 4.5E+02 0.0098 23.6 11.3 19 196-214 181-199 (388)
254 COG2159 Predicted metal-depend 27.8 3.8E+02 0.0082 22.9 7.8 93 120-214 55-165 (293)
255 PRK14464 ribosomal RNA large s 27.7 4.3E+02 0.0093 23.3 8.7 84 140-223 223-329 (344)
256 TIGR03838 queuosine_YadB gluta 27.5 1.8E+02 0.0039 24.7 5.7 61 107-174 46-106 (272)
257 smart00052 EAL Putative diguan 27.5 3.1E+02 0.0068 21.7 7.7 99 111-213 100-210 (241)
258 TIGR02080 O_succ_thio_ly O-suc 27.5 4.4E+02 0.0095 23.4 10.9 87 129-219 91-179 (382)
259 PRK15458 tagatose 6-phosphate 27.4 1.1E+02 0.0025 27.7 4.6 48 18-66 79-133 (426)
260 COG0626 MetC Cystathionine bet 27.4 3.5E+02 0.0077 24.4 7.8 82 142-223 112-196 (396)
261 PF09989 DUF2229: CoA enzyme a 27.3 2.3E+02 0.0049 23.2 6.2 28 185-212 191-218 (221)
262 PRK14470 ribosomal RNA large s 27.2 4.3E+02 0.0093 23.2 8.4 86 131-216 208-321 (336)
263 PRK14469 ribosomal RNA large s 27.1 4.3E+02 0.0093 23.1 8.3 85 131-215 212-323 (343)
264 PLN03233 putative glutamate-tR 27.1 1.8E+02 0.004 27.2 6.1 61 107-175 57-117 (523)
265 PRK08133 O-succinylhomoserine 27.0 3.9E+02 0.0084 23.7 8.1 53 166-218 134-188 (390)
266 cd00807 GlnRS_core catalytic c 26.9 2.3E+02 0.0049 23.7 6.1 47 107-158 47-93 (238)
267 COG4626 Phage terminase-like p 26.6 3E+02 0.0066 26.0 7.3 78 138-215 408-485 (546)
268 cd02742 GH20_hexosaminidase Be 26.6 78 0.0017 27.2 3.5 15 196-210 75-89 (303)
269 PRK12558 glutamyl-tRNA synthet 26.5 1.3E+02 0.0028 27.6 4.9 59 107-173 48-106 (445)
270 PRK12323 DNA polymerase III su 26.3 2.9E+02 0.0063 26.9 7.3 96 108-209 105-203 (700)
271 KOG0996 Structural maintenance 26.3 49 0.0011 33.8 2.3 72 142-216 599-675 (1293)
272 TIGR00973 leuA_bact 2-isopropy 26.1 5.4E+02 0.012 23.9 13.5 24 40-63 21-44 (494)
273 PRK15052 D-tagatose-1,6-bispho 26.1 1.3E+02 0.0028 27.3 4.7 48 18-66 76-130 (421)
274 PRK03995 hypothetical protein; 25.8 4E+02 0.0087 22.6 7.4 83 20-127 181-264 (267)
275 TIGR02810 agaZ_gatZ D-tagatose 25.8 1.3E+02 0.0029 27.2 4.7 48 18-66 75-129 (420)
276 cd01973 Nitrogenase_VFe_beta_l 25.8 5.2E+02 0.011 23.7 11.4 114 61-185 64-194 (454)
277 PRK08208 coproporphyrinogen II 25.7 1.6E+02 0.0035 26.6 5.5 26 108-134 206-231 (430)
278 PRK05718 keto-hydroxyglutarate 25.6 3.7E+02 0.008 21.9 7.8 52 40-94 25-76 (212)
279 PRK12581 oxaloacetate decarbox 25.4 5.5E+02 0.012 23.8 14.4 114 40-168 103-216 (468)
280 PF07994 NAD_binding_5: Myo-in 25.4 1.6E+02 0.0035 25.3 5.1 95 109-211 131-230 (295)
281 PRK05904 coproporphyrinogen II 25.3 2.5E+02 0.0054 24.7 6.5 61 21-81 114-178 (353)
282 PF02679 ComA: (2R)-phospho-3- 25.3 1.6E+02 0.0034 24.7 4.8 86 42-136 84-169 (244)
283 PRK14040 oxaloacetate decarbox 25.3 4.3E+02 0.0092 25.3 8.3 102 113-214 29-150 (593)
284 PRK07810 O-succinylhomoserine 25.2 4.2E+02 0.009 23.7 8.0 55 165-219 142-198 (403)
285 PRK14457 ribosomal RNA large s 25.1 4.8E+02 0.01 23.0 12.0 109 109-217 193-330 (345)
286 COG0419 SbcC ATPase involved i 25.0 1.6E+02 0.0036 29.5 5.8 58 115-174 827-889 (908)
287 TIGR00539 hemN_rel putative ox 25.0 2.1E+02 0.0046 25.1 6.0 61 21-81 111-175 (360)
288 KOG0369 Pyruvate carboxylase [ 25.0 5.6E+02 0.012 25.2 8.7 145 42-218 43-196 (1176)
289 PF01120 Alpha_L_fucos: Alpha- 25.0 1.3E+02 0.0029 26.3 4.7 31 186-216 127-161 (346)
290 PF10941 DUF2620: Protein of u 24.9 84 0.0018 23.0 2.8 50 116-172 60-109 (117)
291 cd00405 PRAI Phosphoribosylant 24.9 2.4E+02 0.0052 22.4 5.9 66 121-188 16-82 (203)
292 TIGR01660 narH nitrate reducta 24.8 36 0.00077 31.2 1.0 53 156-208 264-317 (492)
293 cd09287 GluRS_non_core catalyt 24.6 2.7E+02 0.0059 23.2 6.1 46 108-158 50-95 (240)
294 cd02901 Macro_Poa1p_like Macro 24.6 66 0.0014 23.9 2.4 29 17-53 110-138 (140)
295 PRK10551 phage resistance prot 24.5 5.3E+02 0.012 24.0 8.8 99 110-213 364-474 (518)
296 cd08556 GDPD Glycerophosphodie 24.5 3.2E+02 0.007 20.8 9.3 131 40-214 11-168 (189)
297 PRK12410 glutamylglutaminyl-tR 24.5 2.1E+02 0.0045 26.2 5.8 47 107-158 45-91 (433)
298 cd07938 DRE_TIM_HMGL 3-hydroxy 24.4 3.1E+02 0.0067 23.2 6.6 98 107-210 17-131 (274)
299 PRK06256 biotin synthase; Vali 24.3 4.6E+02 0.01 22.6 11.1 120 39-176 91-223 (336)
300 PRK09454 ugpQ cytoplasmic glyc 24.2 4E+02 0.0088 21.9 14.7 60 155-214 139-217 (249)
301 PRK11267 biopolymer transport 24.2 2.2E+02 0.0048 21.3 5.2 54 107-165 81-134 (141)
302 PRK05939 hypothetical protein; 24.0 4.9E+02 0.011 23.2 8.2 54 166-219 119-174 (397)
303 COG1540 Uncharacterized protei 24.0 1.1E+02 0.0023 25.6 3.5 39 25-65 13-66 (252)
304 cd07944 DRE_TIM_HOA_like 4-hyd 23.9 4.4E+02 0.0095 22.1 16.6 24 40-63 18-41 (266)
305 PRK15108 biotin synthase; Prov 23.8 5E+02 0.011 22.8 11.7 105 39-159 76-187 (345)
306 PTZ00402 glutamyl-tRNA synthet 23.8 4.8E+02 0.01 25.0 8.2 63 106-175 97-159 (601)
307 PRK05628 coproporphyrinogen II 23.8 2.6E+02 0.0055 24.7 6.3 68 21-88 119-193 (375)
308 TIGR01862 N2-ase-Ialpha nitrog 23.8 5.6E+02 0.012 23.3 10.3 137 62-215 96-271 (443)
309 cd05560 Xcc1710_like Xcc1710_l 23.8 2.5E+02 0.0054 20.1 5.1 51 163-214 37-87 (109)
310 PRK02227 hypothetical protein; 23.6 4.4E+02 0.0094 22.0 10.0 154 40-209 9-183 (238)
311 PF00809 Pterin_bind: Pterin b 23.6 3.5E+02 0.0076 21.7 6.6 92 120-215 28-125 (210)
312 PLN03228 methylthioalkylmalate 23.6 4.9E+02 0.011 24.4 8.2 103 105-214 101-230 (503)
313 PLN02951 Molybderin biosynthes 23.6 5.2E+02 0.011 22.9 13.1 146 39-205 90-262 (373)
314 PRK04820 rnpA ribonuclease P; 23.5 3.1E+02 0.0067 20.9 5.8 71 21-125 47-117 (145)
315 PF01207 Dus: Dihydrouridine s 23.5 3.1E+02 0.0067 23.6 6.6 134 40-185 64-212 (309)
316 cd08568 GDPD_TmGDE_like Glycer 23.4 3E+02 0.0066 22.1 6.3 64 151-214 111-202 (226)
317 cd07940 DRE_TIM_IPMS 2-isoprop 23.3 4.4E+02 0.0096 22.0 9.7 107 103-217 13-138 (268)
318 cd00668 Ile_Leu_Val_MetRS_core 23.2 1.4E+02 0.003 25.6 4.4 48 109-160 81-131 (312)
319 COG0218 Predicted GTPase [Gene 23.2 4.1E+02 0.0089 21.5 8.7 101 41-155 90-198 (200)
320 cd05125 Mth938_2P1-like Mth938 23.0 2.5E+02 0.0054 20.4 5.1 49 166-214 40-89 (114)
321 COG2355 Zn-dependent dipeptida 22.9 1E+02 0.0022 26.8 3.4 67 139-214 104-170 (313)
322 PRK15108 biotin synthase; Prov 22.9 5.2E+02 0.011 22.6 10.8 108 107-218 76-196 (345)
323 PRK08207 coproporphyrinogen II 22.9 2.7E+02 0.0059 25.8 6.4 69 21-89 280-355 (488)
324 PRK02399 hypothetical protein; 22.8 3E+02 0.0065 24.9 6.4 58 114-177 199-270 (406)
325 TIGR01305 GMP_reduct_1 guanosi 22.8 1.7E+02 0.0038 25.7 4.8 117 82-205 23-147 (343)
326 PF00155 Aminotran_1_2: Aminot 22.8 4.6E+02 0.01 22.4 7.7 87 125-218 90-196 (363)
327 PF13521 AAA_28: AAA domain; P 22.7 2.4E+02 0.0053 21.2 5.3 82 46-130 65-155 (163)
328 PRK11024 colicin uptake protei 22.7 2.2E+02 0.0049 21.2 5.0 53 107-164 85-137 (141)
329 COG1647 Esterase/lipase [Gener 22.6 3.2E+02 0.007 22.7 6.0 50 142-191 69-122 (243)
330 PF02679 ComA: (2R)-phospho-3- 22.5 1.1E+02 0.0023 25.7 3.3 97 114-211 25-131 (244)
331 PRK08099 bifunctional DNA-bind 22.5 3.7E+02 0.008 24.2 7.0 95 54-154 291-395 (399)
332 PRK09389 (R)-citramalate synth 22.5 3.5E+02 0.0077 25.1 7.1 98 105-210 19-131 (488)
333 COG1210 GalU UDP-glucose pyrop 22.5 1.1E+02 0.0024 26.2 3.4 39 20-58 8-52 (291)
334 TIGR00238 KamA family protein. 22.4 5.2E+02 0.011 22.5 8.8 101 41-157 144-251 (331)
335 PF10171 DUF2366: Uncharacteri 22.4 1.9E+02 0.0041 22.8 4.6 38 128-165 78-115 (173)
336 cd02801 DUS_like_FMN Dihydrour 22.4 4.1E+02 0.0089 21.2 9.5 134 40-186 65-213 (231)
337 PRK07671 cystathionine beta-ly 22.3 5.5E+02 0.012 22.7 8.2 52 167-218 123-176 (377)
338 cd07938 DRE_TIM_HMGL 3-hydroxy 22.2 4.8E+02 0.01 22.0 11.7 24 40-63 18-41 (274)
339 PLN02880 tyrosine decarboxylas 22.1 5.1E+02 0.011 24.0 8.1 50 111-160 189-241 (490)
340 COG0325 Predicted enzyme with 22.1 4.6E+02 0.01 21.7 8.1 116 41-165 35-162 (228)
341 PRK10558 alpha-dehydro-beta-de 21.9 2.5E+02 0.0054 23.5 5.5 67 148-215 9-78 (256)
342 COG4573 GatZ Predicted tagatos 21.9 1.2E+02 0.0025 26.8 3.5 52 16-67 77-134 (426)
343 COG0279 GmhA Phosphoheptose is 21.7 4.1E+02 0.0089 21.0 8.6 120 42-176 28-155 (176)
344 PRK05799 coproporphyrinogen II 21.6 2.4E+02 0.0052 24.8 5.7 60 21-80 110-173 (374)
345 PLN02509 cystathionine beta-ly 21.5 6.4E+02 0.014 23.2 8.6 61 158-220 199-261 (464)
346 PRK14466 ribosomal RNA large s 21.5 5.5E+02 0.012 22.7 7.7 90 84-176 102-203 (345)
347 cd08570 GDPD_YPL206cp_fungi Gl 21.4 3.4E+02 0.0073 22.0 6.2 20 195-214 193-212 (234)
348 PHA02128 hypothetical protein 21.4 3.2E+02 0.007 19.7 5.2 69 144-212 61-150 (151)
349 TIGR00262 trpA tryptophan synt 21.4 4.9E+02 0.011 21.8 9.2 69 143-214 72-149 (256)
350 PLN02231 alanine transaminase 21.3 5E+02 0.011 24.3 7.9 9 84-92 191-199 (534)
351 PF10007 DUF2250: Uncharacteri 21.3 1E+02 0.0022 21.6 2.5 51 112-165 8-58 (92)
352 PRK07764 DNA polymerase III su 21.2 5.9E+02 0.013 25.5 8.6 95 109-209 102-199 (824)
353 cd08590 PI-PLCc_Rv2075c_like C 21.1 5.1E+02 0.011 21.9 7.4 19 46-64 45-63 (267)
354 COG4130 Predicted sugar epimer 21.1 2E+02 0.0042 23.8 4.4 53 167-219 50-109 (272)
355 PRK09776 putative diguanylate 21.0 2.4E+02 0.0052 28.5 6.2 99 111-213 941-1051(1092)
356 PRK10997 yieM hypothetical pro 20.9 3.3E+02 0.0072 25.3 6.5 64 112-175 399-467 (487)
357 PRK07811 cystathionine gamma-s 20.9 5.9E+02 0.013 22.5 10.0 88 128-219 100-189 (388)
358 PRK06176 cystathionine gamma-s 20.9 5.9E+02 0.013 22.5 8.2 53 167-219 123-177 (380)
359 TIGR03278 methan_mark_10 putat 20.8 6.3E+02 0.014 22.8 8.9 120 36-166 83-205 (404)
360 cd01573 modD_like ModD; Quinol 20.7 3.1E+02 0.0066 23.3 5.9 39 146-185 171-209 (272)
361 PRK08084 DNA replication initi 20.7 2.7E+02 0.0058 22.8 5.5 109 41-172 29-146 (235)
362 PRK08045 cystathionine gamma-s 20.7 6E+02 0.013 22.5 8.3 87 129-219 92-180 (386)
363 cd08606 GDPD_YPL110cp_fungi Gl 20.5 5.1E+02 0.011 21.7 12.1 66 149-214 156-253 (286)
364 PRK04390 rnpA ribonuclease P; 20.5 3.5E+02 0.0075 19.7 7.2 65 82-155 43-110 (120)
365 PF00148 Oxidored_nitro: Nitro 20.4 6E+02 0.013 22.4 9.9 132 71-215 58-226 (398)
366 COG4992 ArgD Ornithine/acetylo 20.3 6.5E+02 0.014 22.8 8.0 30 182-211 192-223 (404)
367 PRK00260 cysS cysteinyl-tRNA s 20.2 2.4E+02 0.0052 25.9 5.5 47 109-159 90-136 (463)
368 PRK13561 putative diguanylate 20.2 4.9E+02 0.011 24.7 7.8 70 142-214 533-612 (651)
369 PRK11840 bifunctional sulfur c 20.2 6E+02 0.013 22.3 12.7 73 106-179 146-219 (326)
370 PF04430 DUF498: Protein of un 20.2 1.3E+02 0.0028 21.5 3.1 50 165-214 38-88 (110)
371 PLN02666 5-oxoprolinase 20.1 1.1E+03 0.023 25.2 11.1 105 38-144 172-285 (1275)
372 KOG3085 Predicted hydrolase (H 20.1 2.6E+02 0.0057 23.3 5.2 59 142-203 115-178 (237)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=9e-54 Score=368.60 Aligned_cols=217 Identities=44% Similarity=0.681 Sum_probs=196.2
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCC-CCCE
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKI 87 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~-R~~l 87 (242)
|++++||++|+.||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||. |.||+++|++|+... |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 78999999999999999999999874222 25667888999999999999999999997 799999999999744 8999
Q ss_pred EEEeecCcccCCCccc-CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC
Q 026166 88 QLATKFGCFMLDGVSI-GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (242)
Q Consensus 88 ~I~tK~~~~~~~~~~~-~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~ 166 (242)
+|+||++....++... ....++++|+++++.||+|||+||||||++|+|++..+.++++++|.+|+++|+|++||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999998766421111 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcc-CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccCCCCCCCC
Q 026166 167 SADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVE 227 (242)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 227 (242)
+++++.++++. .+++++|.+||++++..+.+++++|+++||++++||||++|+|++++...
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 99999999999 59999999999999877777999999999999999999999999996653
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.7e-51 Score=346.08 Aligned_cols=224 Identities=46% Similarity=0.724 Sum_probs=200.8
Q ss_pred CCCCCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CC
Q 026166 6 QVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LP 83 (242)
Q Consensus 6 ~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~ 83 (242)
...|+|+++|++|++||++|||||.+.. |+...+.+++++++++|+++|+||||||++||+ +.||..+|+++++ .+
T Consensus 9 ~~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~~~ 86 (336)
T KOG1575|consen 9 ELGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRGWR 86 (336)
T ss_pred hhcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcCCc
Confidence 3468999999999999999999985543 444468999999999999999999999999998 9999999999998 68
Q ss_pred CCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEec
Q 026166 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (242)
Q Consensus 84 R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGv 163 (242)
|++++|+||++.... .......+...+..+++.|+++|+++|||||++||+|+..+.++++++|.+++++|+|++||+
T Consensus 87 R~~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGl 164 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGL 164 (336)
T ss_pred CCcEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEe
Confidence 999999999987652 222456778899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCC--ceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCccccCCCCCC-CCCCCCCc
Q 026166 164 SEASADTIRRAHAVHP--ITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAV-VESLPSES 233 (242)
Q Consensus 164 S~~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~-~~~~~~~~ 233 (242)
|+++++++.+++...+ ++++|++||++.|+.+ .++++.|++.||++++||||++|+||+++. .+..+.+.
T Consensus 165 Se~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~ 238 (336)
T KOG1575|consen 165 SEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGD 238 (336)
T ss_pred ccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccc
Confidence 9999999999999876 9999999999999844 669999999999999999999999999943 34455544
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.5e-50 Score=333.27 Aligned_cols=188 Identities=34% Similarity=0.572 Sum_probs=169.4
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCC
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~ 86 (242)
+.+.+| ++|.+||.||||||++++ .+.+.+.+.+|++.|||+||||..|| ||+.+|+++++ ++|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg----nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG----NEEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc----CHHHHHHHHHhcCCCHHH
Confidence 456777 568889999999999864 23388999999999999999999999 79999999998 78999
Q ss_pred EEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecC
Q 026166 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLS 164 (242)
Q Consensus 87 l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~i~~iGvS 164 (242)
+||+||++... .+++.+.+++++||++||+||+|||++|||.+. ..+.|+|++|++++++|+||+||||
T Consensus 71 lFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 99999998776 468899999999999999999999999999763 2367999999999999999999999
Q ss_pred CCCHHHHHHHhcc--CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCcccc
Q 026166 165 EASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 165 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
||+.++++++++. ..|+++|++||++.+.. +++++|+++||.++|||||++|.
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccc
Confidence 9999999999987 45899999999999974 59999999999999999999654
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.6e-48 Score=341.12 Aligned_cols=216 Identities=29% Similarity=0.513 Sum_probs=186.3
Q ss_pred CCCCCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCC-CChhHHHHHHHHhc---
Q 026166 6 QVHVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV-DHDNEIMVGKALKQ--- 81 (242)
Q Consensus 6 ~~~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~--- 81 (242)
...|++++||++|++||+||||||+. ++...+.+++.+++++|+++|||+||||+.||+ +|.+|+.+|++|++
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~ 86 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFA 86 (346)
T ss_pred CCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhccc
Confidence 34799999999999999999999973 332336678899999999999999999999994 47899999999985
Q ss_pred CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceE
Q 026166 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI 161 (242)
Q Consensus 82 ~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~i 161 (242)
..|++++|+||++....+ .......+++.+++++++||++||+||||+|++|+|++..+.+++|++|++|+++|+|++|
T Consensus 87 ~~Rd~~~I~TK~g~~~~~-~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~i 165 (346)
T PRK09912 87 AYRDELIISTKAGYDMWP-GPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYV 165 (346)
T ss_pred CCCCeEEEEEEecccCCC-CcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 269999999999753111 1112246799999999999999999999999999999888899999999999999999999
Q ss_pred ecCCCCHHHHHHHhcc-----CCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCccccCCCCCC
Q 026166 162 GLSEASADTIRRAHAV-----HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAV 225 (242)
Q Consensus 162 GvS~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 225 (242)
|||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.
T Consensus 166 GvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 166 GISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 9999999998866542 367899999999998644 579999999999999999999999999853
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.9e-48 Score=335.17 Aligned_cols=210 Identities=30% Similarity=0.461 Sum_probs=182.8
Q ss_pred eeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCCEE
Q 026166 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (242)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~l~ 88 (242)
||+||++|++||+||||||++ ++...+.+++.+++++|+++|||+||||+.||. |.||+++|++|+. .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 578999999999999999974 222347889999999999999999999999997 7899999999985 3699999
Q ss_pred EEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCH
Q 026166 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
|+||++..... ......+++.+++++++||++||+||||+|++|+|++..+.+++|++|++|+++|+||+||+|||++
T Consensus 77 iaTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 99998542110 1113467999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHhcc------CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCccccCCCCCCC
Q 026166 169 DTIRRAHAV------HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVV 226 (242)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 226 (242)
+++.++... .+++++|.+||++++.. +.+++++|+++||++++|+||++|+|++++..
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 998876543 46789999999999873 56899999999999999999999999998543
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.2e-47 Score=335.91 Aligned_cols=214 Identities=29% Similarity=0.398 Sum_probs=182.8
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCC------CChhHHHHHHHHhc-
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGV------DHDNEIMVGKALKQ- 81 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------~g~~e~~lg~~l~~- 81 (242)
|++++||++|+.||+||||||++|+ ..+.+++.+++++|++.|||+||||+.||. .|.||..+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999874 236789999999999999999999999973 26799999999974
Q ss_pred CCCCCEEEEeecCcccCCCcc---cCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----------------CCC
Q 026166 82 LPRDKIQLATKFGCFMLDGVS---IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----------------SVS 141 (242)
Q Consensus 82 ~~R~~l~I~tK~~~~~~~~~~---~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----------------~~~ 141 (242)
..|++++|+||++........ .....+++.+++++++||++||+||||||++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999998532110000 012467999999999999999999999999999964 235
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc------CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
++++|++|++|+++|+|++||+|||+..++++++.. ..+.++|.+||++++..+.+++++|+++||.+++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776542 35788999999999876678999999999999999999
Q ss_pred ccccCCCCCCC
Q 026166 216 GRGFFAGKAVV 226 (242)
Q Consensus 216 ~~G~L~~~~~~ 226 (242)
++|+|+++...
T Consensus 237 ~~G~Ltg~~~~ 247 (346)
T PRK10625 237 AFGTLTGKYLN 247 (346)
T ss_pred cCeeccCCCCC
Confidence 99999998543
No 7
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.5e-46 Score=320.61 Aligned_cols=208 Identities=44% Similarity=0.718 Sum_probs=188.6
Q ss_pred eeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCC-CCCEEE
Q 026166 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP-RDKIQL 89 (242)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~-R~~l~I 89 (242)
+++||++|++||+||||||+++..| .+.+++.+++++|++.|||+||||+.||. |.+|+.+|++|+..+ |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 5789999999999999999987655 37899999999999999999999999997 889999999999754 999999
Q ss_pred EeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCCH
Q 026166 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
+||++..... ..+.+++.+++++++||++|++||||+|++|+|+.... ..++|++|++++++|+|++||+||+++
T Consensus 77 ~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 9999865321 13468999999999999999999999999999987665 889999999999999999999999999
Q ss_pred HHHHHHhcc--CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccCCCCCCC
Q 026166 169 DTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVV 226 (242)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 226 (242)
+.++++++. .+|+++|++||++++....+++++|+++||++++|+||++|.|++++..
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 999999988 7899999999999998655799999999999999999999999887443
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.7e-47 Score=319.36 Aligned_cols=186 Identities=31% Similarity=0.479 Sum_probs=170.8
Q ss_pred eeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc------CCC
Q 026166 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ------LPR 84 (242)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~------~~R 84 (242)
+.+| ++|.+||.||||||+. ++.++.+.+..|++.||||||||..|+ +|+.+|.+|++ ++|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~----NE~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG----NEKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC----ChHHHHHHHHHHhhhCCcch
Confidence 6788 8999999999999873 678899999999999999999999999 69999999985 799
Q ss_pred CCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----------------CCHHHHHHH
Q 026166 85 DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----------------VSIEDTMGE 148 (242)
Q Consensus 85 ~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~----------------~~~~~~~~~ 148 (242)
+++||+||++... ..++.++.++++||++|++||+|||++|||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 9999999998765 468999999999999999999999999999543 346789999
Q ss_pred HHHHHHcCCcceEecCCCCHHHHHHHhcc--CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccC
Q 026166 149 LKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 220 (242)
Q Consensus 149 l~~l~~~G~i~~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 220 (242)
|++++++|++|+||||||+..++++++.. .+|.++|+++|++.++ ++++++|+++||.|.|||||+++.-
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC
Confidence 99999999999999999999999999987 6789999999998885 6899999999999999999997764
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1e-46 Score=325.95 Aligned_cols=206 Identities=33% Similarity=0.571 Sum_probs=178.6
Q ss_pred eeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCCEE
Q 026166 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (242)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~l~ 88 (242)
||+||++|++||.||||||++|+.|+. .+.+++.+++++|++.|||+||||+.||. |.+|..+|++|++ .+|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 678999999999999999999876664 37889999999999999999999999997 8899999999986 4799999
Q ss_pred EEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~---~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
|+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. .+.+++|++|++|+++||||+||+||
T Consensus 79 I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999974321 124679999999999999999999999999999642 34578999999999999999999999
Q ss_pred CCHHHHHHHhcc-----CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccCCCCC
Q 026166 166 ASADTIRRAHAV-----HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKA 224 (242)
Q Consensus 166 ~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 224 (242)
|++++++.+.+. ..+..+|..|++.++.. .+++++|+++||++++|+||++|+|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 999988777653 23344578888877643 58999999999999999999999999873
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-44 Score=307.56 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=174.7
Q ss_pred eecCCCCcccccceecccccCC--cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEE
Q 026166 12 VKLGSQGLEVSRLGFGCGGLSG--IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQL 89 (242)
Q Consensus 12 ~~lg~~g~~vs~lglG~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I 89 (242)
..|+ |++||+||||||++|+ .|+...+.+++.+++++|++.|||+||||+.||+ +.+|+.+|++++ ..|++++|
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~-~~R~~~~i 85 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALH-PYPDDLTI 85 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHh-cCCCeEEE
Confidence 4564 9999999999999975 4665557889999999999999999999999997 789999999997 46999999
Q ss_pred EeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCcceEecC
Q 026166 90 ATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIKYIGLS 164 (242)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~l~~l~~~G~i~~iGvS 164 (242)
+||++........+....+++.+++++++||++|++||||+|++|+++. ..+..++|++|++|+++||||+||+|
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 9998754322122234578999999999999999999999999887421 23578999999999999999999999
Q ss_pred CCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccc
Q 026166 165 EASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
||++++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC
Confidence 999999999998888999999999998763 67999999999999999999844
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.7e-44 Score=305.52 Aligned_cols=199 Identities=38% Similarity=0.602 Sum_probs=171.4
Q ss_pred cceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCCEEEEeecCcccCCC
Q 026166 23 RLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFMLDG 100 (242)
Q Consensus 23 ~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~l~I~tK~~~~~~~~ 100 (242)
+||||||++++. ..+.+++.++++.|++.|||+||||+.||+ |.+|+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998753 458999999999999999999999999976 7799999999997 799999999999111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH--hcc
Q 026166 101 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA--HAV 177 (242)
Q Consensus 101 ~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~--~~~ 177 (242)
.......+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++++ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 22344578999999999999999999999999999998888 899999999999999999999999999999999 455
Q ss_pred CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccCCCCCCCCCC
Q 026166 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESL 229 (242)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~ 229 (242)
.+|+++|++||++++....+++++|+++||++++|+||++|.|+++......
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~ 204 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPP 204 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccCccccccccCCC
Confidence 7899999999999776678999999999999999999999999988544433
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.1e-44 Score=304.75 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=167.8
Q ss_pred CcccccceecccccCCc-------CCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEE
Q 026166 18 GLEVSRLGFGCGGLSGI-------YNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA 90 (242)
Q Consensus 18 g~~vs~lglG~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~ 90 (242)
+++||+||||||++|+. |+. ++.+++.+++++|++.|||+||||+.||. ||..+|++|++..+++++|+
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~ 77 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLS 77 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeecc
Confidence 57899999999999863 344 48899999999999999999999999986 99999999984234678888
Q ss_pred eecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCCcceEecCCCCH
Q 026166 91 TKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSI-EDTMGELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 91 tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~-~~~~~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
||.. ..+++.+++++++||++||+||||+|++|+|++. .+. .++|++|++|+++||||+||+|||++
T Consensus 78 tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 146 (292)
T PRK14863 78 TVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHAS 146 (292)
T ss_pred cccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCH
Confidence 8842 1358999999999999999999999999999753 233 57899999999999999999999999
Q ss_pred HHHHHHhccCCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCccccCCCC
Q 026166 169 DTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (242)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 223 (242)
+++..+....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.
T Consensus 147 ~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 147 DDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 999888877889999999999998643 4699999999999999999999999864
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.1e-43 Score=298.72 Aligned_cols=180 Identities=27% Similarity=0.426 Sum_probs=161.3
Q ss_pred ccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCCEEEEeecCccc
Q 026166 20 EVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQLATKFGCFM 97 (242)
Q Consensus 20 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~l~I~tK~~~~~ 97 (242)
+||+||||||+++ .+++.+++++|++.|||+||||+.|| +|..+|++|+. .+|+++||+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD----NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC----CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 6899999999763 46789999999999999999999999 69999999985 479999999998532
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHh
Q 026166 98 LDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (242)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~ 175 (242)
..+++.+++++++||++||+||||+|++|+|++. .+.+++|++|++++++||||+||+|||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2568999999999999999999999999999763 467899999999999999999999999999999887
Q ss_pred cc---CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccccCCC
Q 026166 176 AV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (242)
Q Consensus 176 ~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 222 (242)
+. .+++++|++||++.+. .+++++|+++||++++|+||++|.+..
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~ 188 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK 188 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC
Confidence 64 3689999999999875 689999999999999999999997654
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.1e-43 Score=283.03 Aligned_cols=210 Identities=30% Similarity=0.425 Sum_probs=188.6
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCC
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDK 86 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~ 86 (242)
|+++.|++.++++|++.+|+|++.. |+. +.++....++.|++.|||+||-|+.||+ +..|+++|.+|+- ..|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 7899999999999999999999964 553 6789999999999999999999999998 9999999999986 68999
Q ss_pred EEEEeecCcccCCCc---ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEec
Q 026166 87 IQLATKFGCFMLDGV---SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 163 (242)
Q Consensus 87 l~I~tK~~~~~~~~~---~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGv 163 (242)
+.|+||.+...+... -...+.+.++|.+++++||.+|++||+|+++||+||+..+.+|+.+|+..|+++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 999999997553211 12457889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcc--CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCccccCCC
Q 026166 164 SEASADTIRRAHAV--HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (242)
Q Consensus 164 S~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~ 222 (242)
|||++.+++-+-+. .++++||++.|+++... .++.+++|+.+.|..++||||++|-+..
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~ 218 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFL 218 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcccc
Confidence 99999999988776 56889999999998763 3789999999999999999999985443
No 15
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.5e-42 Score=278.42 Aligned_cols=229 Identities=30% Similarity=0.491 Sum_probs=199.9
Q ss_pred CCCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCE
Q 026166 8 HVPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKI 87 (242)
Q Consensus 8 ~m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l 87 (242)
.|++|.||+||+.||+++||+..++..|+.. +.++....+..|++.|||+|||++.||. +.+|..+|.+++++||+..
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhCChhhe
Confidence 5899999999999999999999999988874 7777777777799999999999999998 9999999999999999999
Q ss_pred EEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCcceEec
Q 026166 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGL 163 (242)
Q Consensus 88 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~----~~~~~~~~~l~~l~~~G~i~~iGv 163 (242)
+|+||++...-+ ....++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||+|+||+
T Consensus 99 yIaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 99 YIATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 999999876533 233478999999999999999999999999999987643 336799999999999999999999
Q ss_pred CCCCHHHHHHHhccC--CceEEe--cccCccCcChhhhHHHHHHHhCCcEEecccCccccCCCCCCCCCCCCCcccceec
Q 026166 164 SEASADTIRRAHAVH--PITAVQ--MEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILVCVT 239 (242)
Q Consensus 164 S~~~~~~l~~~~~~~--~~~~~q--~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 239 (242)
+.++.+.+.++++.. .++++- ..|++.+... -..+++.+.+|++|++-++++.|+|+..-.+.+.|..+.+....
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a 256 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEAA 256 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 999999999999763 466554 5666655542 57888889999999999999999999998889999988876544
Q ss_pred c
Q 026166 240 K 240 (242)
Q Consensus 240 ~ 240 (242)
+
T Consensus 257 ~ 257 (342)
T KOG1576|consen 257 K 257 (342)
T ss_pred H
Confidence 3
No 16
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.3e-41 Score=287.18 Aligned_cols=183 Identities=28% Similarity=0.386 Sum_probs=163.4
Q ss_pred eeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCCCEE
Q 026166 11 RVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRDKIQ 88 (242)
Q Consensus 11 ~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~~l~ 88 (242)
+..| ++|+.||+||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|+. .+|++++
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~~~ 72 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK----NEEGVGKALKEASVAREELF 72 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC----CHHHHHHHHHHcCCCHHHEE
Confidence 3567 7899999999999875 467899999999999999999999999 69999999985 3689999
Q ss_pred EEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceEecCCCC
Q 026166 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEAS 167 (242)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~i~~iGvS~~~ 167 (242)
|+||++. .+++.+++++++||++|++||||+|++|+|++.. +..++|++|++|+++|+||+||+|||+
T Consensus 73 i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 141 (275)
T PRK11565 73 ITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ 141 (275)
T ss_pred EEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 9999852 2467999999999999999999999999998653 467999999999999999999999999
Q ss_pred HHHHHHHhccC--CceEEecccCccCcChhhhHHHHHHHhCCcEEecccCcccc
Q 026166 168 ADTIRRAHAVH--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 168 ~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
++++++++... ++.++|++|+++.+. .+++++|+++||.+++|+||++|.
T Consensus 142 ~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 142 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 99999987543 578999999998874 679999999999999999999773
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.9e-39 Score=271.78 Aligned_cols=205 Identities=28% Similarity=0.401 Sum_probs=183.8
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEE
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQ 88 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~ 88 (242)
|.||++|+||.++|.+|||||++...+....+.+.+.++|++|++.|||+||||..|.. |.||..+|+||....|++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 88999999999999999999999876665568999999999999999999999999954 66999999999998899999
Q ss_pred EEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCCcceEec
Q 026166 89 LATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-----DTMGELKKLVEEGKIKYIGL 163 (242)
Q Consensus 89 I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~-----~~~~~l~~l~~~G~i~~iGv 163 (242)
++||+..... .+.+.+++-++++|++|++||+|+|+||..+.. .++ ..++++++++++|+||++|+
T Consensus 80 LaTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 9999975332 468999999999999999999999999999763 222 36899999999999999999
Q ss_pred CCCC-HHHHHHHhccCCceEEecccCccCcChh--hhHHHHHHHhCCcEEecccCccccCCCC
Q 026166 164 SEAS-ADTIRRAHAVHPITAVQMEYSLWTREIE--DDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (242)
Q Consensus 164 S~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~ 223 (242)
|.|+ .+.+.+++...+++++|++||.++.... .+.+++|.++|++|+.++|+.+|-|+..
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~ 213 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN 213 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC
Confidence 9977 5678899999999999999999998754 4899999999999999999999988873
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.42 E-value=6.1e-07 Score=72.85 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc--CCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
+.+.|+.||+++.+|+|..||+|.|+..+|++++.. ..|..+|++..-.+.-+ .+|.+||.+++|.+...+=
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecCC
Confidence 456899999999999999999999999999999987 46889999888888764 7999999999999987763
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.83 E-value=1.6 Score=37.68 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.++.+++.|++.|..-- |.+...+...=+++++.-. ++-|..+.... ++.+... .+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~----------~~~~~A~-~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG----------WTPEEAV-ELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC----------cCHHHHH-HHHHH
Confidence 567778888999999999998643 3211122222233333222 56677666432 3444332 23344
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (242)
|+..+ +.++..|-+. +-++.+.+|++...+- +.|=+-++...+.++++....+++|+.-...-.- .-.+
T Consensus 200 l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 45544 4444555432 2466777888877776 5566678999999999988888898875554221 1268
Q ss_pred HHHHHHHhCCcEEecccCccc
Q 026166 198 IIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 198 l~~~~~~~gi~v~a~spl~~G 218 (242)
+..+|+++|+.++..+-+..+
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 999999999999876554433
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.07 E-value=4.6 Score=35.47 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc--ccCCC--ChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD--VYGVD--HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~~--g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
+.++..+.+..+.+.|++.|-.-- .|... ..-....=+++++.-.+++.|....... ++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~----------~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGR----------WDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCC----------CCHHHHH--
Confidence 467777888888999999886432 22100 0011112233333223455666655321 3444433
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE- 193 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~- 193 (242)
+.+++|. ..++.+++.|-+. +.++.+.++++.-.+- +.|=|.++++.+.++++...++++|+...-.-.-
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 2333332 2355566666443 2466777888776565 5556668899999999877788888875554321
Q ss_pred hhhhHHHHHHHhCCcEEeccc
Q 026166 194 IEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 194 ~~~~l~~~~~~~gi~v~a~sp 214 (242)
....+...|+++|+.++..+.
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 126899999999999876653
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=91.09 E-value=8.3 Score=32.33 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.++.+++.|++.|-.-- |.+...+...=+++++.-.+++.|....... ++.+...+ +-+.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv--g~~~~~d~~~v~~vr~~~g~~~~l~vDan~~----------~~~~~a~~-~~~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV--GRDPARDVAVVAALREAVGDDAELRVDANRG----------WTPKQAIR-ALRA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCC----------cCHHHHHH-HHHH
Confidence 556777888889999999987532 2101112222233443333455554444221 34444433 2234
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (242)
|+.++ +.+++.|-+. +.++.+.++++.-.+- +.|=+-++...+.++++...++++|+..+..-.- ....
T Consensus 152 l~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 152 LEDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred HHhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHH
Confidence 44444 4455666433 2356777777776655 5566678899999998877888888876654431 2278
Q ss_pred HHHHHHHhCCcEEecccCcccc
Q 026166 198 IIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 198 l~~~~~~~gi~v~a~spl~~G~ 219 (242)
+.+.|+++|+.++..+.+..|+
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHcCCcEEecCccchHH
Confidence 9999999999998766655443
No 22
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.61 E-value=5.9 Score=31.80 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHH----
Q 026166 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL---- 120 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL---- 120 (242)
.++|...++-|-+.+|-....|. +-..|++ .+ ++.. . ....+++.+.+++.+-+
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~-------LL~~L~~-~k-~v~g---~----------GvEid~~~v~~cv~rGv~Viq 61 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGE-------LLAYLKD-EK-QVDG---Y----------GVEIDPDNVAACVARGVSVIQ 61 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchH-------HHHHHHH-hc-CCeE---E----------EEecCHHHHHHHHHcCCCEEE
Confidence 35677788899999997775552 3344442 11 1111 1 11245666766655444
Q ss_pred -------HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhc--cCCceEEecccCccC
Q 026166 121 -------KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWT 191 (242)
Q Consensus 121 -------~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~--~~~~~~~q~~~~~~~ 191 (242)
..+.-+..|.+.+..- ...+....+.|+++.+-|+-.-|++.||.-.....-+- ---|..-.++|+-++
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd 139 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD 139 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC
Confidence 4444444444444221 11123345668888899998889999998776544433 223566778888777
Q ss_pred cCh-----hhhHHHHHHHhCCcEEecccCcccc
Q 026166 192 REI-----EDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 192 ~~~-----~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
... -.++-++|++.|+.+.-..++..+.
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 642 2789999999999999999988665
No 23
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=88.75 E-value=15 Score=31.85 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---C-CCCCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---L-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~-~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
.+.+++.++++.+.+.|++.|.-+ |..+.-...+-+.++. . .-.++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---GGEPll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---GGEPLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---CCCCcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HHH
Confidence 578999999999999999888643 3211111122233322 2 1235666665311 111
Q ss_pred HHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCCCCHHHHHHHhcc---CC
Q 026166 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHAV---HP 179 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~----i~~iGvS~~~~~~l~~~~~~---~~ 179 (242)
. -..|...|++.+- +-+|..++ ...+++++++++.+++.|. |..+.+...+.+++.++++. .+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 1 2334445665543 34444332 2357889999999999985 33454445555666665543 34
Q ss_pred ceEEecccCccCcC---------hhhhHHHHHHHhCCcEE
Q 026166 180 ITAVQMEYSLWTRE---------IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 180 ~~~~q~~~~~~~~~---------~~~~l~~~~~~~gi~v~ 210 (242)
+.+..++|.++... ...++++..+++|+.+.
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 44445555544321 12568888888765543
No 24
>PRK08392 hypothetical protein; Provisional
Probab=88.37 E-value=12 Score=30.34 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCEEeCccccCCC--ChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHH
Q 026166 43 VGCSIIKETFNRGITLFDTSDVYGVD--HDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (242)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~--g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL 120 (242)
...+.++.|.+.|++.|=.++|.-.. ..-+..+.+..+-..+.++.| ..|.... ..+.. ....+..+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~i--l~GiE~~--------~~~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVV--LAGIEAN--------ITPNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceE--EEeEEee--------ecCCc-chhHHHHH
Confidence 36789999999999999877776310 011222222211011123333 2222110 00111 12233344
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-------C-HHHHHHHhcc---CCceEEecccCc
Q 026166 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-------S-ADTIRRAHAV---HPITAVQMEYSL 189 (242)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~-------~-~~~l~~~~~~---~~~~~~q~~~~~ 189 (242)
+. .|++ +.-+|.........+..+.+.++.+.+.+.-+|=-.. . .+.++++++. ... . ++.|-
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~-~--lEiNt 157 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK-A--FEISS 157 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC-E--EEEeC
Confidence 43 4665 6778843322334567788888888988766654221 1 1233333322 111 1 22222
Q ss_pred cCcChhhhHHHHHHHhCCcEE
Q 026166 190 WTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 190 ~~~~~~~~l~~~~~~~gi~v~ 210 (242)
..+.+...+++.|++.|+.++
T Consensus 158 ~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCCHHHHHHHHHcCCEEE
Confidence 122233678999999998764
No 25
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=87.54 E-value=21 Score=32.05 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
+.++..+.++.+++ .|++.|=.--.-.. ...+...=+++++.-. ++.|..-.... ++++... +
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~-~~~di~~v~avRea~~-~~~l~vDaN~~----------w~~~~A~----~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLP-GEEEIEAVKALAEAFP-GARLRLDPNGA----------WSLETAI----R 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCC-HHHHHHHHHHHHHhCC-CCcEEEeCCCC----------cCHHHHH----H
Confidence 56667777777775 69998753221011 1111112223333222 45454443222 3444433 3
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhh
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IED 196 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~ 196 (242)
.++.|. . ++.++..|-+ .++.+.+|++...+- +.|=|.++..++..+++...++++|......-.- ...
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334443 3 6777777753 467888888887665 6677778889999999887888888876554321 127
Q ss_pred hHHHHHHHhCCcEEecccC
Q 026166 197 DIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 197 ~l~~~~~~~gi~v~a~spl 215 (242)
++.+.|+.+|+.+...+..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 8999999999999877654
No 26
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.00 E-value=5.7 Score=33.03 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCCHHHHHHHhccCCceEEe
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~i~~iGvS~~~~~~l~~~~~~~~~~~~q 184 (242)
.++.+...+ +-..|..+|+++|.+-....+.......+.++.++.+++.+ .++...++....+.++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 345565555 44557889998888876654422111245788888999888 5676677765567777776653 45555
Q ss_pred cccCccC--------c------ChhhhHHHHHHHhCCcEEecc
Q 026166 185 MEYSLWT--------R------EIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 185 ~~~~~~~--------~------~~~~~l~~~~~~~gi~v~a~s 213 (242)
+.+...+ + ..-...+++++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5554431 1 112568889999998875443
No 27
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=86.47 E-value=22 Score=31.31 Aligned_cols=151 Identities=9% Similarity=0.070 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcC-CCEEeCccccCCCC-h-hHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRG-ITLFDTSDVYGVDH-D-NEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g-~-~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
+.++..+.+..+++.| ++.|=.-- |... . ..+.+ +++++.-.+++-|..-.... ++.+...+ +
T Consensus 142 ~~~~~~~~~~~~~~~G~f~~~KiKv--g~~~~~~d~~~v-~avr~~~g~~~~l~iDaN~~----------~~~~~A~~-~ 207 (365)
T cd03318 142 DTERDIAEAEEMLEAGRHRRFKLKM--GARPPADDLAHV-EAIAKALGDRASVRVDVNQA----------WDESTAIR-A 207 (365)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEe--CCCChHHHHHHH-HHHHHHcCCCcEEEEECCCC----------CCHHHHHH-H
Confidence 3444556667788899 88875321 2100 1 12223 33333223344444333221 34443322 2
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-h
Q 026166 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-I 194 (242)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 194 (242)
-+.|+.+ ++.++..|-+. +.++.+.+|+++..+. +.|=|-++..++..+++...++++|+.....-.- .
T Consensus 208 ~~~l~~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~ 278 (365)
T cd03318 208 LPRLEAA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRR 278 (365)
T ss_pred HHHHHhc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHH
Confidence 2333333 45566666432 2467788888877665 6777778899999998877788888865554321 1
Q ss_pred hhhHHHHHHHhCCcEEecc
Q 026166 195 EDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~s 213 (242)
-.++..+|+++|+.++..+
T Consensus 279 ~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 279 AQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred HHHHHHHHHHcCCceeecC
Confidence 2789999999999988543
No 28
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=85.60 E-value=16 Score=29.33 Aligned_cols=145 Identities=11% Similarity=0.020 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
+.+++.++++.|++.|++..|.- +.++..++.. +.+.++++.-=. ...+.+++.
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~---------~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~ 67 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI---------EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAG 67 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHH
Confidence 78899999999999998877632 2333344332 345566652221 123445555
Q ss_pred HHHHHHHcCCC----cccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEEecccCcc
Q 026166 116 CEASLKRLDVD----YIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLW 190 (242)
Q Consensus 116 l~~sL~~L~~d----~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~ 190 (242)
+......+... .---+++-.+..+...-...=.-.-++..|. |.++|. +-+++.+.+++....++++.+.+...
T Consensus 68 l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 68 IKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEccccc
Confidence 55555555421 1112333333333222223333344566776 667785 44667777777667778887776655
Q ss_pred CcChh-hhHHHHHHHhCC
Q 026166 191 TREIE-DDIIPLCRELGI 207 (242)
Q Consensus 191 ~~~~~-~~l~~~~~~~gi 207 (242)
..... .++++.+++.|.
T Consensus 147 ~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 147 TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 44322 778899998854
No 29
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.40 E-value=22 Score=31.23 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.+..+++.|++.|=.--.... .......=+++++.-.+++.|..-... .++.+...+-+ +.
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~-~~ 208 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPT-ADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERG-QA 208 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCC-hHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHH-HH
Confidence 4456667777778889886633211111 112222333444433346666554422 24455433322 23
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (242)
|+.+ ++.++..|-.. +-++.+.++++.--|. +.|=+.++..++..+++...++++|+..+..-.- .-.+
T Consensus 209 l~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ 279 (355)
T cd03321 209 LDQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLR 279 (355)
T ss_pred HHcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHH
Confidence 3433 55666666533 2467777787775543 5677778999999998887788888866654321 1267
Q ss_pred HHHHHHHhCCcEEec
Q 026166 198 IIPLCRELGIGIVAY 212 (242)
Q Consensus 198 l~~~~~~~gi~v~a~ 212 (242)
+.+.|+.+|+.++..
T Consensus 280 ia~~A~~~gi~~~~h 294 (355)
T cd03321 280 ASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHcCCeeccc
Confidence 999999999998644
No 30
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=85.27 E-value=26 Score=30.95 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.+..+.+.|++.|=. . -.+.+ +++++.-.+++.|..-... .++.+... +.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~Ki----K----v~~~v-~avre~~G~~~~l~vDaN~----------~w~~~~A~----~~ 182 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRV----Q----LPKLF-EAVREKFGFEFHLLHDVHH----------RLTPNQAA----RF 182 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEee----C----HHHHH-HHHHhccCCCceEEEECCC----------CCCHHHHH----HH
Confidence 4566677778888899998832 1 12222 2233222345555443321 13444332 22
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (242)
++.|. ..++.++..|-+. +-++.+.+|++...+- +.|=|-++...+..+++...++++|+.....-.- .-.+
T Consensus 183 ~~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ 256 (361)
T cd03322 183 GKDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARK 256 (361)
T ss_pred HHHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHH
Confidence 33332 3467777777543 2477788888887775 7788889999999999888888998876553321 1268
Q ss_pred HHHHHHHhCCcEEecc
Q 026166 198 IIPLCRELGIGIVAYS 213 (242)
Q Consensus 198 l~~~~~~~gi~v~a~s 213 (242)
+.+.|+.+|+.+...+
T Consensus 257 ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 257 IADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHHHHcCCeeeccC
Confidence 9999999999997654
No 31
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=84.96 E-value=0.43 Score=41.94 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=38.2
Q ss_pred cCCcceEecCCCCHHHHHHHhccC-CceEEecccCccCcChhhhHHHHHHHhCCc
Q 026166 155 EGKIKYIGLSEASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (242)
Q Consensus 155 ~G~i~~iGvS~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 208 (242)
-|+||++||--++++++.++.... .-+..+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 499999999999999999998752 222333333444333346788888888886
No 32
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=84.65 E-value=7.7 Score=31.60 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=53.1
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecC-CCCHHHHHHHhccCCceEEecccCccCcChhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLS-EASADTIRRAHAVHPITAVQMEYSLWTREIEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 197 (242)
...+|.||+=+++.-......+.+ ...++.+.-. ++.+||. |.+.+.+.++++..+++.+|+.- ....+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~----~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG-----~e~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPE----QAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHG-----DEDPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHH----HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECC-----CCCHH
Confidence 356789998877665322233333 3333333333 8899998 57788899999999999999733 23456
Q ss_pred HHHHHHHhC-CcEE
Q 026166 198 IIPLCRELG-IGIV 210 (242)
Q Consensus 198 l~~~~~~~g-i~v~ 210 (242)
.++..++.. +.++
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 677777654 5543
No 33
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=84.52 E-value=28 Score=30.74 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=87.0
Q ss_pred HHHHHHHHH-HcCCCEEeCccccCC-CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 44 GCSIIKETF-NRGITLFDTSDVYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 44 ~~~~l~~A~-~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
..+.+..++ +.|++.|=.-- |. +.......=+++++.-.+++.|..-... .++++...+ +-+.|+
T Consensus 145 ~~~~~~~~~~~~Gf~~~KiKv--g~~~~~~d~~~v~~~re~~g~~~~l~~DaN~----------~~~~~~A~~-~~~~l~ 211 (368)
T TIGR02534 145 DIAEAEERIEEKRHRSFKLKI--GARDPADDVAHVVAIAKALGDRASVRVDVNA----------AWDERTALH-YLPQLA 211 (368)
T ss_pred HHHHHHHHHHhcCcceEEEEe--CCCCcHHHHHHHHHHHHhcCCCcEEEEECCC----------CCCHHHHHH-HHHHHH
Confidence 334455555 47999885321 11 0112222223344333345555443322 134544333 223333
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHH
Q 026166 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDII 199 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~ 199 (242)
. .++.++..|-+.. .++.+.+|++...+. +.|=|-++..++..+++....+++|+...-.-.- .-..+.
T Consensus 212 ~-----~~~~~iEeP~~~~----d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~ 282 (368)
T TIGR02534 212 D-----AGVELIEQPTPAE----NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIA 282 (368)
T ss_pred h-----cChhheECCCCcc----cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHH
Confidence 3 3556676665332 467777788877665 7788889999999998877788888866553221 126799
Q ss_pred HHHHHhCCcEEecccC
Q 026166 200 PLCRELGIGIVAYSPL 215 (242)
Q Consensus 200 ~~~~~~gi~v~a~spl 215 (242)
..|+.+|+.++..+.+
T Consensus 283 ~lA~~~gi~~~~~~~~ 298 (368)
T TIGR02534 283 AIAEAAGIALYGGTML 298 (368)
T ss_pred HHHHHcCCceeeecch
Confidence 9999999998865433
No 34
>PRK14017 galactonate dehydratase; Provisional
Probab=83.76 E-value=31 Score=30.73 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccc-----cCCCC--hhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDV-----YGVDH--DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~-----Yg~~g--~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
+.++..+.+..+++.|++.|=.--. ++... ......=+++++.-.+++.|..-.... ++.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~----------w~~~~A 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGR----------VHKPMA 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCC----------CCHHHH
Confidence 5666778888888999998854210 11000 011111222332222345554444221 344432
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccC
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (242)
.+.++.|. .+++.++..|-+.. .++.+.+|++...+- +.|=|.++...+..+++...++++|+.....-
T Consensus 194 ----~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 194 ----KVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ----HHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 23333332 34666777775332 357788888887665 67777899999999998877888888765543
Q ss_pred c-ChhhhHHHHHHHhCCcEEeccc
Q 026166 192 R-EIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 192 ~-~~~~~l~~~~~~~gi~v~a~sp 214 (242)
. ..-..+.+.|+.+||.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 2 1227899999999999987654
No 35
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.65 E-value=7.5 Score=34.79 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+......++++|++.|++++|||.+... ...+.... .+..+.+..-.|..++ .+--.....+++-
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~~~a---~~Agit~v~~~G~dPG--------i~nv~a~~a~~~~ 141 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP----PWKLDEEA---KKAGITAVLGCGFDPG--------ITNVLAAYAAKEL 141 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch----hhhhhHHH---HHcCeEEEcccCcCcc--------hHHHHHHHHHHHh
Confidence 3445569999999999999999997762 23333332 3456667777665431 2223333333333
Q ss_pred HHHcCCCcccEEEeccCCCC
Q 026166 120 LKRLDVDYIDLYYQHRVDTS 139 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~ 139 (242)
.+ .+++||+|..+.|++.
T Consensus 142 ~~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 142 FD--EIESIDIYVGGLGEHG 159 (389)
T ss_pred hc--cccEEEEEEecCCCCC
Confidence 33 6899999999999765
No 36
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=83.20 E-value=5.4 Score=32.42 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEecc
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 186 (242)
.+..+|.|++=+.+........+.+.+ ..+.... .+.++.+||. |-+++.+.++++...++++|+.
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 346689999998754433223344433 3333322 3568889996 7889999999998899999984
No 37
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=82.93 E-value=13 Score=30.49 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHh
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~ 205 (242)
.++.++..|-+.. .++.+.+|++...+. +.+=|.++...+..+++...++++|+..+..-.- .-.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5667777775433 356677777777665 5566667888888888777788888876654321 126899999999
Q ss_pred CCcEEecccCcccc
Q 026166 206 GIGIVAYSPLGRGF 219 (242)
Q Consensus 206 gi~v~a~spl~~G~ 219 (242)
|+.++..+.+..|.
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999887765443
No 38
>PRK08609 hypothetical protein; Provisional
Probab=82.92 E-value=43 Score=31.68 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCCEEeCccccCC----CChhHHHHHHH------Hhc-CCCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 44 GCSIIKETFNRGITLFDTSDVYGV----DHDNEIMVGKA------LKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~~e~~lg~~------l~~-~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
..++++.|.+.|++.|=.++|+.. .+.+...+-.. +++ ...=+|+...-+.... +...+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~--------~g~~d-- 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP--------DGSLD-- 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC--------Ccchh--
Confidence 556999999999999988888631 01222222222 221 1111233333332211 01111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC------CC--HHHHHHHhcc---CCce
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE------AS--ADTIRRAHAV---HPIT 181 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~------~~--~~~l~~~~~~---~~~~ 181 (242)
-.+..|+. .||+ +.-+|++. ..+.++.++.+.++.+.|.+.-||=-. +. ...++++++. .. .
T Consensus 421 --~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 421 --YDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred --hcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 12224444 4665 77888753 235677889999999888877665433 11 1223333322 22 2
Q ss_pred EEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 182 AVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 182 ~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++|++-+.+.......+++.|.+.|+.++
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 55665555544444789999999998754
No 39
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=82.81 E-value=11 Score=31.23 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=85.5
Q ss_pred cccceecccccCCcCCCCCCHHHHHHHHHHHHH-cCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCC
Q 026166 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD 99 (242)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~ 99 (242)
-|||.+||.++.+ .+++..|++ +|...+-.|----+ ......-...+.-.+++++.+.-...
T Consensus 8 ~SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~-~~~~~~~~~~~~~i~~~~~~lLPNTa----- 70 (247)
T PF05690_consen 8 RSRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVN-LGSKPGGDNILDYIDRSGYTLLPNTA----- 70 (247)
T ss_dssp S-SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGST-TTS-TTCHHCCCCTTCCTSEEEEE-T-----
T ss_pred ecceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEeccc-CCCCCCCccHHHHhcccCCEECCcCC-----
Confidence 4799999987643 466667775 47776655432211 00000011122224455555433321
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccC
Q 026166 100 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVH 178 (242)
Q Consensus 100 ~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~ 178 (242)
...+.+...+..+-..+-+++++|-|=.+..+... -+..|++++-+.|+++|-+-.- -.+-++-..+++.+..
T Consensus 71 -----Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-Y~~~D~v~akrL~d~G 144 (247)
T PF05690_consen 71 -----GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-YCTDDPVLAKRLEDAG 144 (247)
T ss_dssp -----T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-EE-S-HHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-cCCCCHHHHHHHHHCC
Confidence 12567888888889999999999998777666543 3467899999999999976422 2234444445554432
Q ss_pred CceEEecccCccCcC----hhhhHHHHHHHhCCcEEec
Q 026166 179 PITAVQMEYSLWTRE----IEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 179 ~~~~~q~~~~~~~~~----~~~~l~~~~~~~gi~v~a~ 212 (242)
...++---+++-.. ....+-..+++.+|.||.-
T Consensus 145 -caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvD 181 (247)
T PF05690_consen 145 -CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVD 181 (247)
T ss_dssp --SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEE
T ss_pred -CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEe
Confidence 22333222333221 1133444455668887754
No 40
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=82.28 E-value=10 Score=30.81 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=43.8
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEeccc
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 187 (242)
+..+|.|++=+.+........+.+ ..+.+.... .+.++.+||. +-+++.+.++++...++++|+.-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 356899999886433322223333 333333322 3568899998 67889999999888999999843
No 41
>PRK00208 thiG thiazole synthase; Reviewed
Probab=81.71 E-value=30 Score=28.99 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=96.1
Q ss_pred cccceecccccCCcCCCCCCHHHHHHHHHHHHH-cCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCC
Q 026166 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLD 99 (242)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~ 99 (242)
-|||.+||.++.+ .+++..|++ +|...+-.|-.--+....+..+-+.+ ++..+.+ +..+
T Consensus 10 ~SRl~~Gtgky~s-----------~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i---~~~~~~~---lpNT--- 69 (250)
T PRK00208 10 SSRLLLGTGKYPS-----------PQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLL---PPLGVTL---LPNT--- 69 (250)
T ss_pred eccceEecCCCCC-----------HHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhc---cccCCEE---CCCC---
Confidence 4799999977632 345555554 46655544432211000122222332 2333322 1111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccC
Q 026166 100 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVH 178 (242)
Q Consensus 100 ~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~ 178 (242)
....+.+...+..+-..+-+++++|-|=.+..+... .+..+++++.++|.++|.+-. =+++-++...+++.+.
T Consensus 70 ----aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~- 143 (250)
T PRK00208 70 ----AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA- 143 (250)
T ss_pred ----CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc-
Confidence 223677888888888899999999998888776654 357889999999999998753 3455666666666665
Q ss_pred CceEEecccCccCcC---hhhhHHHHHHH-hCCcEEec
Q 026166 179 PITAVQMEYSLWTRE---IEDDIIPLCRE-LGIGIVAY 212 (242)
Q Consensus 179 ~~~~~q~~~~~~~~~---~~~~l~~~~~~-~gi~v~a~ 212 (242)
.+++++.--.++-.. ...++++...+ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 333332211222211 12556776666 47887754
No 42
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.93 E-value=14 Score=29.09 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=70.7
Q ss_pred HHHHHHHH--cCCCEEeCc--------cccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCc--ccCCCCCHHHHH
Q 026166 46 SIIKETFN--RGITLFDTS--------DVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV--SIGVKGSPEYVR 113 (242)
Q Consensus 46 ~~l~~A~~--~Gi~~~DtA--------~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~--~~~~~~~~~~i~ 113 (242)
+-.++|+. .++-++||- ..|. |..+..+-..|. -.|-++.|.++-...+.+++ ..+...++..+.
T Consensus 69 ~~~d~av~~a~~v~fiDTD~itT~~~~~~y~--gr~~P~~~~~i~-~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~ 145 (187)
T COG3172 69 AYEDAAVRYANKVAFIDTDFLTTQAFCKKYE--GREHPFLQALIA-EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQ 145 (187)
T ss_pred HHHHHHHhCCCceEEEeccHHHHHHHHHHHc--ccCCchHHHHHh-hcccceEEEcCCCCceeCCCccccccHhHHHHHH
Confidence 34455554 499999984 3555 445667777777 47888998888765444333 222334677888
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G 156 (242)
.-+++.|++-+..| ..|..++.......+.++.+++...+
T Consensus 146 ~~l~~~L~~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 146 NLLEQMLEENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHHHHhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 88999999998665 45555555555667888888887765
No 43
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=80.38 E-value=39 Score=29.51 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCC-CC--hhHHH--HHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-DH--DNEIM--VGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g--~~e~~--lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
+.++..+.+..+++.|++.|=.--..+. .+ .-+.. .=+++++.-.+++-|..-... .++++...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~----------~~~~~~A~~ 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYM----------SWNLNYAIK 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCC----------CCCHHHHHH
Confidence 5666777888889999998754221110 00 00111 122233222234444333321 134443332
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC
Q 026166 115 CCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (242)
.+++| +..++.++..|-+.. .++.+.+|++...+- +.|=|.++...+..+++...++++|+.....-.-
T Consensus 190 ----~~~~l--~~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 190 ----MARAL--EKYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred ----HHHHh--hhcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 23333 224666666665432 467778888887776 6677788999999999887788888876554321
Q ss_pred -hhhhHHHHHHHhCCcEEec
Q 026166 194 -IEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 194 -~~~~l~~~~~~~gi~v~a~ 212 (242)
...++.+.|+.+|+.+...
T Consensus 260 t~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred HHHHHHHHHHHHcCCeeccc
Confidence 2278999999999998755
No 44
>PRK13796 GTPase YqeH; Provisional
Probab=78.39 E-value=48 Score=29.37 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
.+.++..++++..-+.- +-.+|..+.-+. -...+.+... .+.-++|.+|...... ....+.+.+-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~ 121 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNW 121 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHH
Confidence 46666777777776555 456786654442 3444555443 4567889999865321 1235566666
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHH-HHHHh
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADT-IRRAH 175 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~-l~~~~ 175 (242)
++...+.+|....|++++..-. ...++++++.+.+..+.+.+--+|.+|..-+- +..++
T Consensus 122 l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 122 LRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred HHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHH
Confidence 6666777787555788776554 34578889999888777888999999987554 44443
No 45
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=78.05 E-value=47 Score=30.04 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=63.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHH
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIP 200 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~------G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~ 200 (242)
+++ ++..|-+..+.++.++.+.+|+++ ..=-..+=|.++.+.+.++++....+++|+..+-.-.- ...++.+
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~ 342 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIM 342 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH
Confidence 355 788886544444568888888766 33335677778899999999888888899877654332 1278999
Q ss_pred HHHHhCCcEEecccC
Q 026166 201 LCRELGIGIVAYSPL 215 (242)
Q Consensus 201 ~~~~~gi~v~a~spl 215 (242)
+|+.+||.++..+..
T Consensus 343 lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 343 YCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHcCCEEEEeCCC
Confidence 999999999876554
No 46
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=76.87 E-value=52 Score=28.94 Aligned_cols=152 Identities=12% Similarity=0.020 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.+..+++.|++.|=.-- |.+.......=+++++.-.+++.|..-.... ++.+...+ +-+.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~----------~~~~~A~~-~~~~ 204 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANGA----------YSRKQALA-LARA 204 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCCC----------CCHHHHHH-HHHH
Confidence 456666777788889999874321 2101111222233443222344444333221 34444332 2233
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCc-ceEecCCCCHHHHHHHhccCCceEEecccCccCcC-hh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IE 195 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~i-~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~ 195 (242)
|+. .++.++..|-+. +-++.+.+++++ -.| -+.|=|.++...+.++++....+++|+...-.-.- .-
T Consensus 205 l~~-----~~~~~~EeP~~~----~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~ 275 (352)
T cd03328 205 FAD-----EGVTWFEEPVSS----DDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGF 275 (352)
T ss_pred HHH-----hCcchhhCCCCh----hhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 333 455666666432 346778888887 333 25677788999999999887888999876654321 12
Q ss_pred hhHHHHHHHhCCcEEecc
Q 026166 196 DDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~s 213 (242)
..+.+.|+.+|+.++..+
T Consensus 276 ~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 276 LQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHcCCeeccCc
Confidence 789999999999998653
No 47
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=76.69 E-value=50 Score=28.65 Aligned_cols=132 Identities=11% Similarity=-0.019 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---cc-----ccCCCC----hhHHHHHHHHhc---CCCCCEEEEeecCcccCCCcccC
Q 026166 40 SHEVGCSIIKETFNRGITLFDT---SD-----VYGVDH----DNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGVSIG 104 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-----~Yg~~g----~~e~~lg~~l~~---~~R~~l~I~tK~~~~~~~~~~~~ 104 (242)
++++..+....+.+.|+..||- .+ .||. | ..-+.+.+.++. .-..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 6777888888888999999992 22 2442 2 223444444443 12224678888754221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-H--HHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCc
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-D--TMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPI 180 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~-~--~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~ 180 (242)
+.+.. ..+-+.++..| +|.+-+|.-....... . -|+.+.++++.-.|--||... .++++.+++++....
T Consensus 146 ---~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 11222 34556677777 4677788643222111 1 378888888887788888877 578888888876555
Q ss_pred eEEec
Q 026166 181 TAVQM 185 (242)
Q Consensus 181 ~~~q~ 185 (242)
+.+++
T Consensus 219 DgVmi 223 (312)
T PRK10550 219 DAVMI 223 (312)
T ss_pred CEEEE
Confidence 55554
No 48
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.28 E-value=53 Score=28.81 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCC-------CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGV-------DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-------~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
+.++..+.+..+.+.|++.|=.--.... +...+...=+++++.-..++.|..-.... ++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~----------~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGR----------VSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC----------CCHHH-
Confidence 4566667778888999998864321110 00112222233433222355554444221 34333
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccC
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (242)
..+.++.|. ..++.++..|-+.. .++.+.+|++..-+. +.|=|.++..++..+++...++++|+.....-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 223334442 34666777765432 477888888876665 66777789999999988777888888755432
Q ss_pred c-ChhhhHHHHHHHhCCcEEecc
Q 026166 192 R-EIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 192 ~-~~~~~l~~~~~~~gi~v~a~s 213 (242)
. ..-..+.+.|+++|+.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 1 112689999999999998655
No 49
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.14 E-value=42 Score=28.33 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCCcceEecCCC---CHHHHHHHh
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV------SIEDTMGELKKLVEEGKIKYIGLSEA---SADTIRRAH 175 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~l~~l~~~G~i~~iGvS~~---~~~~l~~~~ 175 (242)
..++.+...+ +-+.|.++|+++|++-+........ ...+.|+.+..+.+ +..+..+++.. +.+.++.+.
T Consensus 15 ~~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 3466666654 6666999999999987765432110 11456666666553 24555555543 345666655
Q ss_pred ccCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 176 AVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 176 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
+. .++.+.+-+....-..-.+.+++++++|+.+...
T Consensus 93 ~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 GS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred cC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 43 3444444433333222377899999999876543
No 50
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.05 E-value=39 Score=27.10 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
+.+++.+++..+++.|+...|. | +.++..++++ +.++++++.-=. ...+.++..
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~ 66 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAG 66 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHH
Confidence 7889999999999999765542 2 2333333332 345566554322 123344444
Q ss_pred HHHHHHHcCCCc---ccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEEecccCccC
Q 026166 116 CEASLKRLDVDY---IDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWT 191 (242)
Q Consensus 116 l~~sL~~L~~d~---iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~ 191 (242)
+......+.... ---+++--+..+...-...=.-.-++..|. |-++| .+.+++.+.+++....++++-+.+....
T Consensus 67 l~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 67 LDLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 554444443321 112344444333222222222334566777 45677 5567777777777677777777665544
Q ss_pred cCh-hhhHHHHHHHhCC
Q 026166 192 REI-EDDIIPLCRELGI 207 (242)
Q Consensus 192 ~~~-~~~l~~~~~~~gi 207 (242)
.-. -.++++.+++.+.
T Consensus 146 ~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 146 TMGGMKEVIEALKEAGL 162 (201)
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 322 2678888888753
No 51
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=75.98 E-value=46 Score=27.87 Aligned_cols=166 Identities=16% Similarity=0.078 Sum_probs=96.2
Q ss_pred cccceecccccCCcCCCCCCHHHHHHHHHHHHH-cCCCEEeCccccCCC-ChhHHHHHHHHhcCCCCCEEEEeecCcccC
Q 026166 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN-RGITLFDTSDVYGVD-HDNEIMVGKALKQLPRDKIQLATKFGCFML 98 (242)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~-g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~ 98 (242)
-|||-+||.++.+ .+++..|++ +|...+-.|-.--+. ...+..+-+.++ .+++.+ +..+
T Consensus 9 ~SRl~~Gtgky~s-----------~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~---~~~~~~---lpNT-- 69 (248)
T cd04728 9 SSRLLLGTGKYPS-----------PAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLD---KSGYTL---LPNT-- 69 (248)
T ss_pred ecceEEecCCCCC-----------HHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcc---ccCCEE---CCCC--
Confidence 4799999977642 355566664 466555433221110 012223333332 223322 1111
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc
Q 026166 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 99 ~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
....+.+...+..+-..+-+++++|-|=.+..+... .+..+++++-++|.++|.+-. =+++-++...+++.+.
T Consensus 70 -----aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl-pyc~dd~~~ar~l~~~ 143 (248)
T cd04728 70 -----AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLEDA 143 (248)
T ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc
Confidence 223677888888888999999999998888777654 357889999999999998753 3455666666666665
Q ss_pred CCceEEecccCccCcC---hhhhHHHHHHH-hCCcEEec
Q 026166 178 HPITAVQMEYSLWTRE---IEDDIIPLCRE-LGIGIVAY 212 (242)
Q Consensus 178 ~~~~~~q~~~~~~~~~---~~~~l~~~~~~-~gi~v~a~ 212 (242)
.+++++.--.++... ...++++..++ .++.|++-
T Consensus 144 -G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 -GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred -CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 333332211222211 12556666666 47777754
No 52
>PLN02428 lipoic acid synthase
Probab=75.41 E-value=50 Score=29.21 Aligned_cols=156 Identities=13% Similarity=0.223 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc----ccCCCChhHHHHHHHHhcCCC--CCEEEEeecCcccCCCcccCCCCCHHHH-
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD----VYGVDHDNEIMVGKALKQLPR--DKIQLATKFGCFMLDGVSIGVKGSPEYV- 112 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~----~Yg~~g~~e~~lg~~l~~~~R--~~l~I~tK~~~~~~~~~~~~~~~~~~~i- 112 (242)
+.++..++.+.+.+.|++++=... .|-+ +..+ .+.+.++.+.. ..+.|..=. ++..
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D-~ga~-~~~elir~Ir~~~P~i~Ie~L~---------------pdf~~ 193 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPD-GGSG-HFAETVRRLKQLKPEILVEALV---------------PDFRG 193 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCc-ccHH-HHHHHHHHHHHhCCCcEEEEeC---------------ccccC
Confidence 567777888888889998664321 2221 2222 33333333111 123222211 1111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCcc----eEecCCCCHHHHHHHh
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDT-----------SVSIEDTMGELKKLVEE--GKIK----YIGLSEASADTIRRAH 175 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~-----------~~~~~~~~~~l~~l~~~--G~i~----~iGvS~~~~~~l~~~~ 175 (242)
...+-+.|..-| +|. +-|+++. ....++.++.++.+++. |..- -+|+ .-+.+++.+.+
T Consensus 194 d~elL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 194 DLGAVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred CHHHHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 122223333344 555 4466754 12467788999999988 7653 2477 56777766665
Q ss_pred cc---CCceEEec-----------ccCccCcC-hhhhHHHHHHHhCCcEEecccCcc
Q 026166 176 AV---HPITAVQM-----------EYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGR 217 (242)
Q Consensus 176 ~~---~~~~~~q~-----------~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~ 217 (242)
.. ..++++.+ +.+.+-.. ..+.+-+++.+.|...++.+||-+
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 43 33333222 22222221 126678888899999999988863
No 53
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=75.33 E-value=54 Score=28.42 Aligned_cols=154 Identities=17% Similarity=0.077 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.+..+++.|++.|=.-- +. ..+...=+++++.- .++.|..-... .++++.+. .
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~--~~d~~~v~~vr~~~-~~~~l~vDaN~----------~~~~~~a~--~--- 191 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP--QIMHQLVKLRRLRF-PQIPLVIDANE----------SYDLQDFP--R--- 191 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC--chhHHHHHHHHHhC-CCCcEEEECCC----------CCCHHHHH--H---
Confidence 556677888888899999874221 11 12323333444322 23434333321 13454432 1
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDD 197 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~ 197 (242)
++.|. ..++.++..|-.. +.++.+.++++.-.+. +.|=|.++...+..+++...++++|+...-.-.- .-..
T Consensus 192 ~~~l~--~~~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred HHHHh--hCCCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 23332 2466667666432 3567788888876665 7788889999999999888888888866543321 1268
Q ss_pred HHHHHHHhCCcEEecccCcccc
Q 026166 198 IIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 198 l~~~~~~~gi~v~a~spl~~G~ 219 (242)
+...|+.+|+.++..+.+..|+
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHcCCeEEEcceEcccH
Confidence 9999999999998766555553
No 54
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.40 E-value=33 Score=28.73 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CCcceEecC---CCCHHHHHHHhc
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTIRRAHA 176 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~l~~l~~~-G~i~~iGvS---~~~~~~l~~~~~ 176 (242)
.++.+...+ +-+.|.++|+++|++-+...... .......|+.++.+++. +.++...+. ....+.++.+.+
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 345555554 55669999999999975532110 00112246666666443 346655554 334566777665
Q ss_pred cCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 177 VHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 177 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
. .++.+.+-++.-+...-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3455554333333222377899999999876543
No 55
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=73.29 E-value=8.5 Score=32.94 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEec
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (242)
.++.+... .+-+.|.++|+++|.+-.+..|...-...+.++.+..+.+...++...+. .....++.+++.. ++.+.+
T Consensus 22 ~~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTADKI-ALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 34555444 46677999999999997555554221223346666666654456655554 4778888887752 222222
Q ss_pred ccCc---------cCcC-----hhhhHHHHHHHhCCcEE
Q 026166 186 EYSL---------WTRE-----IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 186 ~~~~---------~~~~-----~~~~l~~~~~~~gi~v~ 210 (242)
-++. -... .-.+.+++++++|+.+.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 2211 1110 11579999999999885
No 56
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=73.19 E-value=75 Score=29.04 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCccccCC-CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFN-RGITLFDTSDVYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (242)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~ 117 (242)
+.++..+....+++ .|++.|=.-- |. ++......=+++++.- .++.|..-... .++.+...
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKv--G~~~~~~Di~~v~avRea~-~d~~L~vDAN~----------~wt~~~Ai---- 242 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKG--GVLRGEEEIEAVTALAKRF-PQARITLDPNG----------AWSLDEAI---- 242 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEec--CCCChHHHHHHHHHHHHhC-CCCeEEEECCC----------CCCHHHHH----
Confidence 45666666666665 5999874321 21 0111222223334322 34444433321 13444332
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcChhh
Q 026166 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIED 196 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~ 196 (242)
+.+++|. ++ +.++..|-+..+..+-++.+.++++.-.|- +.|=+.++..++..+++...++++|......--....
T Consensus 243 ~~~~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~ 319 (441)
T TIGR03247 243 ALCKDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSV 319 (441)
T ss_pred HHHHHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHH
Confidence 2333333 22 446666654322112377788888776664 5577778899999999887788888775321111127
Q ss_pred hHHHHHHHhCCcEEeccc
Q 026166 197 DIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 197 ~l~~~~~~~gi~v~a~sp 214 (242)
.+.+.|+.+|+.+..++.
T Consensus 320 kIa~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 320 RVAQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHHHcCCEEEEeCC
Confidence 899999999999887653
No 57
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.87 E-value=45 Score=27.83 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEecccCccCcC-
Q 026166 117 EASLKRLDVDYIDLYYQHRVDTSVSI-EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTRE- 193 (242)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~-~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~- 193 (242)
-+-|+..|. |.+.+|..+..... .-.|+.+.++++.-.+.-|.... .+++++.++++....+.+.+---+....
T Consensus 161 ~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 344456664 66666665432111 11355666666665555554443 5678888888765455444311111111
Q ss_pred hhhhHHHHHHHhCCcE
Q 026166 194 IEDDIIPLCRELGIGI 209 (242)
Q Consensus 194 ~~~~l~~~~~~~gi~v 209 (242)
.-.++.+.|+++|+.+
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 1268899999999864
No 58
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.64 E-value=32 Score=30.49 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh 134 (242)
.+.+.+.+.++..++ |+.++|.+|.+.
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 356666666666553 677777777665
No 59
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.50 E-value=48 Score=27.36 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=80.4
Q ss_pred eecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc-----CCCCC
Q 026166 12 VKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-----LPRDK 86 (242)
Q Consensus 12 ~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~-----~~R~~ 86 (242)
++|| .|++++.|.+ +-+..+.. -.--..+++--+++.|++.. .|. +|..+.+.+++ ++-.+
T Consensus 19 krLG-GGiP~GsL~l----IEGd~~tG-KSvLsqr~~YG~L~~g~~v~----yvs----Te~T~refi~qm~sl~ydv~~ 84 (235)
T COG2874 19 KRLG-GGIPVGSLIL----IEGDNGTG-KSVLSQRFAYGFLMNGYRVT----YVS----TELTVREFIKQMESLSYDVSD 84 (235)
T ss_pred hhcc-CCCccCeEEE----EECCCCcc-HHHHHHHHHHHHHhCCceEE----EEE----echhHHHHHHHHHhcCCCchH
Confidence 3665 3788877765 11122221 22455788888899999865 333 56666666665 22233
Q ss_pred EEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------CCHHHHHHHHHHHHHcCCcce
Q 026166 87 IQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKY 160 (242)
Q Consensus 87 l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~------~~~~~~~~~l~~l~~~G~i~~ 160 (242)
.++.-++....-+ -.+..+++...+.-++..++....-.-|++.+...+.- ..+.+.+..+..+.++||+--
T Consensus 85 ~~l~G~l~~~~~~--~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 85 FLLSGRLLFFPVN--LEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred HHhcceeEEEEec--ccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 3333333221100 00122456667777777777777767799999876432 123456677777778999877
Q ss_pred EecCC
Q 026166 161 IGLSE 165 (242)
Q Consensus 161 iGvS~ 165 (242)
+=+..
T Consensus 163 lTvhp 167 (235)
T COG2874 163 LTVHP 167 (235)
T ss_pred EEeCh
Confidence 76654
No 60
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=70.43 E-value=76 Score=29.53 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCH----HHHHHHHHH-H----------HHcCCcceEecCCC------CHHHHH
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSI----EDTMGELKK-L----------VEEGKIKYIGLSEA------SADTIR 172 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~----~~~~~~l~~-l----------~~~G~i~~iGvS~~------~~~~l~ 172 (242)
..++...+.++.+.++++.++.|...... +.+++++.+ + .+++.|.-||.++. +...+.
T Consensus 102 dDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elk 181 (511)
T TIGR01278 102 EDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELR 181 (511)
T ss_pred cCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHH
Confidence 33444445555445889999988765432 223332222 1 12456888898763 345666
Q ss_pred HHhccCCceEEec----------------ccCccC-cChhhhHHHHHH-HhCCcEEecccCc
Q 026166 173 RAHAVHPITAVQM----------------EYSLWT-REIEDDIIPLCR-ELGIGIVAYSPLG 216 (242)
Q Consensus 173 ~~~~~~~~~~~q~----------------~~~~~~-~~~~~~l~~~~~-~~gi~v~a~spl~ 216 (242)
++++...+.++.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 182 rlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 182 RLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred HHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 7766544444432 222221 111133455554 4599998777775
No 61
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=70.13 E-value=64 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTS 62 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (242)
.+.++..++++.-.+.|+..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 378888999999999999999987
No 62
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=69.85 E-value=32 Score=32.87 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEeccc
Q 026166 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (242)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 187 (242)
..+|.|++=+.+........+.+.....+.+......++.|||. |-+++.+.++.+...++++|+.-
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 56899999987655443334444413333333333457789996 78899999999888999999854
No 63
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=69.84 E-value=67 Score=27.13 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHH--HHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMV--GKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~l--g~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+...+.++.--+.|..+|..+..-+. ...+..+ ...|++ ...+-..-.+... +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~-~~~~~t~~~a~~l~~--~~g~~~i~Hlt~r---------~~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGG-STRDRTVRIVRRIKK--ETGIPTVPHLTCI---------GATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCC-CcHHHHHHHHHHHHH--hcCCCeeEEeeec---------CCCHHHHHHHHHHH
Confidence 45555566656778999999887663 2233333 333432 1112111222111 14567777777644
Q ss_pred HHHcCCCcccEEEeccCCC-------CCCHHHHHHHHHHHHHcCCcceEecCCCC--------H-HHHHHHhcc----CC
Q 026166 120 LKRLDVDYIDLYYQHRVDT-------SVSIEDTMGELKKLVEEGKIKYIGLSEAS--------A-DTIRRAHAV----HP 179 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~-------~~~~~~~~~~l~~l~~~G~i~~iGvS~~~--------~-~~l~~~~~~----~~ 179 (242)
..+|++ +++.|-.-.+ ...+..+.+.++.+++..---.||+..+. . .+++.+.+. ..
T Consensus 83 -~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 788864 3444443211 12233456666666654223467776532 1 234444332 34
Q ss_pred ceEEecccCccCcChhhhHHHHHHHhCCcE
Q 026166 180 ITAVQMEYSLWTREIEDDIIPLCRELGIGI 209 (242)
Q Consensus 180 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 209 (242)
+.+-|.-|+.-. -.++++.|++.|+.+
T Consensus 160 f~iTQ~~fd~~~---~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 160 YAITQLFFDNDD---YYRFVDRCRAAGIDV 186 (272)
T ss_pred eEeeccccCHHH---HHHHHHHHHHcCCCC
Confidence 666677666522 267889999997664
No 64
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=68.54 E-value=89 Score=28.01 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=76.1
Q ss_pred cccccCCcCCCCC-CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHH-HHHhcCCCCCEEEEeecCcccCCCcccC
Q 026166 27 GCGGLSGIYNKPL-SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVG-KALKQLPRDKIQLATKFGCFMLDGVSIG 104 (242)
Q Consensus 27 G~~~~~~~~~~~~-~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg-~~l~~~~R~~l~I~tK~~~~~~~~~~~~ 104 (242)
|.-.+|..|.+-+ +-..+.+-=-+|+|-|+-.+-||. |.+-.... ..|. ..-|.++-++++....
T Consensus 48 ~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aS-----G~AA~~~ai~~la-~aGD~iVss~~LYGGT------- 114 (426)
T COG2873 48 GLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVAS-----GQAAITYAILNLA-GAGDNIVSSSKLYGGT------- 114 (426)
T ss_pred CCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhcc-----chHHHHHHHHHhc-cCCCeeEeeccccCch-------
Confidence 3334455554432 223444555578999998887776 22332222 2233 4668888888884322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEe
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q 184 (242)
...+..+|+++|+ +.-++...+ .++.-+++. .+.|+| +..
T Consensus 115 --------~~lf~~tl~~~Gi---~v~fvd~~d----~~~~~~aI~-----~nTkav--------------------f~E 154 (426)
T COG2873 115 --------YNLFSHTLKRLGI---EVRFVDPDD----PENFEAAID-----ENTKAV--------------------FAE 154 (426)
T ss_pred --------HHHHHHHHHhcCc---EEEEeCCCC----HHHHHHHhC-----cccceE--------------------EEE
Confidence 2457788999995 444443332 221111111 122222 222
Q ss_pred cccCccCcCh-hhhHHHHHHHhCCcEEecccCccccCCCC
Q 026166 185 MEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (242)
Q Consensus 185 ~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 223 (242)
.-=|+-..-. -+.+.+.|+++|+.++.=+.++...|..+
T Consensus 155 tigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP 194 (426)
T COG2873 155 TIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRP 194 (426)
T ss_pred eccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecch
Confidence 1112111111 16777888888888887777776666554
No 65
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=68.54 E-value=43 Score=30.10 Aligned_cols=83 Identities=7% Similarity=-0.003 Sum_probs=61.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHh
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~ 205 (242)
.++.++..|-+.. .++.+.+|++.-.+- +.|=|-++...+..+++...++++|+...-.-.- .-..+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~~----d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPAE----NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCcc----CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 4667777664332 367788888877665 7778889999999999888888999866554321 126899999999
Q ss_pred CCcEEeccc
Q 026166 206 GIGIVAYSP 214 (242)
Q Consensus 206 gi~v~a~sp 214 (242)
|+.++..+.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999887543
No 66
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=68.20 E-value=66 Score=29.77 Aligned_cols=152 Identities=8% Similarity=0.027 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeCcccc-CCC-ChhHHHHHHHHhcC-CCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 40 SHEVGCSIIKETFN-RGITLFDTSDVY-GVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Y-g~~-g~~e~~lg~~l~~~-~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
+.+...+-++...+ .|+++|.-++.- ..+ ....+++...+++. ..-...+.+.+.... .+ ..
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~---------~d-----~e 288 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIV---------RD-----AD 288 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEeccccccc---------CC-----HH
Confidence 77777778887765 699987543321 110 11223333333211 111122333321110 12 23
Q ss_pred HHHHHHHcCCCcccE-------EEeccCCCCCCHHHHHHHHHHHHHcCCcce----EecCCCCHHHHHHHhcc---CCce
Q 026166 116 CEASLKRLDVDYIDL-------YYQHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPIT 181 (242)
Q Consensus 116 l~~sL~~L~~d~iDl-------~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~----iGvS~~~~~~l~~~~~~---~~~~ 181 (242)
+-+.+++.|+.++-+ -.+.........++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++
T Consensus 289 ll~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 334556667655443 112222223456778899999999997432 47777888877666554 2333
Q ss_pred EEecccCccCcChhhhHHHHHHHhCC
Q 026166 182 AVQMEYSLWTREIEDDIIPLCRELGI 207 (242)
Q Consensus 182 ~~q~~~~~~~~~~~~~l~~~~~~~gi 207 (242)
.. .++.+...+...+.+.+++++.
T Consensus 369 ~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 369 QA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred ce--EEEEecCCCCcHHHHHHHhhcc
Confidence 33 3344444434678888887764
No 67
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=67.66 E-value=37 Score=31.04 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ccCCC----------CC-CHHH----HHHHHHHHHHcCCcceEecCCCCH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDT----------SV-SIED----TMGELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~----------~~-~~~~----~~~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
.+.+.+.+.++..+ .++.++|.+|.+ |.|.. .. +.++ .-.+.+.|.+.|... +|+++|.-
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 35666766666655 477777777755 22210 01 1122 224556677788754 88888874
No 68
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.33 E-value=56 Score=29.09 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=59.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHH
Q 026166 130 LYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLC 202 (242)
Q Consensus 130 l~~lh~p~~~~~~~~~~~~l~~l~~~------G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~ 202 (242)
++++..|-+..+..+.++.+.++++. +.=-+.|=|.++...+.++++....+++|+..+-.-.- ...++.++|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35676665433333457777777766 33346677778999999999887888888876654322 127899999
Q ss_pred HHhCCcEEecc
Q 026166 203 RELGIGIVAYS 213 (242)
Q Consensus 203 ~~~gi~v~a~s 213 (242)
+.+|+.++..+
T Consensus 309 ~a~Gi~~~~h~ 319 (369)
T cd03314 309 KEHGVGAYLGG 319 (369)
T ss_pred HHcCCcEEEeC
Confidence 99999998754
No 69
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=67.19 E-value=34 Score=31.25 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHR 135 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~ 135 (242)
.+.+.+++.++..++ ++.++|++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 467777777766654 7888888887763
No 70
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.11 E-value=87 Score=27.38 Aligned_cols=148 Identities=19% Similarity=0.093 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
++..+.+.++++.|++.|=.-- +. ....+.+ +++++.-. ++-|..-... .++.+... .++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~-~~d~~~l-~~vr~~~g-~~~l~lDaN~----------~~~~~~a~-----~~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KP-GWDVEPL-KAVRERFP-DIPLMADANS----------AYTLADIP-----LLK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--Ch-HHHHHHH-HHHHHHCC-CCeEEEECCC----------CCCHHHHH-----HHH
Confidence 6677888889999999873321 21 1122333 33333212 4444433322 13444432 234
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHH
Q 026166 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDII 199 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~ 199 (242)
+| +..++.++..|-.. +.++.+.++++.-.+ -+.|=|.++...+..+++...++++|+.....-.- .-..+.
T Consensus 199 ~l--~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RL--DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hh--hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 44 23466777766432 246677777766544 36777889999999999887788888876554321 126899
Q ss_pred HHHHHhCCcEEecccC
Q 026166 200 PLCRELGIGIVAYSPL 215 (242)
Q Consensus 200 ~~~~~~gi~v~a~spl 215 (242)
..|+.+|+.++..+.+
T Consensus 273 ~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 273 DLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHcCCcEEecCcc
Confidence 9999999999765544
No 71
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=66.43 E-value=82 Score=27.64 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHc-CCcceEecC---CCCHHHH
Q 026166 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTI 171 (242)
Q Consensus 104 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p--------~~~~~~~~~~~~l~~l~~~-G~i~~iGvS---~~~~~~l 171 (242)
.+.++.+.+.+ +-+.|.+.|+++|.+-..... ....+ .++.++.+++. ...+...+. ..+.+.+
T Consensus 19 ~~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 19 RHQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHH
Confidence 34566676665 556699999999998532111 11122 34455555332 334444333 2356777
Q ss_pred HHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 172 RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 172 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
+.+.+. .++.+.+-.+.-+.+.-.+.+++++++|..+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 777664 3445444444333333478999999999887654
No 72
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=66.16 E-value=88 Score=27.08 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=65.1
Q ss_pred HHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCcc-eEecCC---CCHHHHHHHhccCC-ceEEeccc
Q 026166 118 ASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIK-YIGLSE---ASADTIRRAHAVHP-ITAVQMEY 187 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~~l~~l~~~G~i~-~iGvS~---~~~~~l~~~~~~~~-~~~~q~~~ 187 (242)
.+.+++|. |++-+|.... +.+..|+.+.|+++.+.=+|- .||-|. -+++.++++.+... =-|.....
T Consensus 158 k~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 44566774 6777776532 346789999999999988875 678886 45777888877632 11233333
Q ss_pred CccCcChhhhHHHHHHHhCCcEEecccCc
Q 026166 188 SLWTREIEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
|+ +.+. ..+.+.+.++|=.|++|+++.
T Consensus 235 nl-dlDy-~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NL-DLDY-ERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cc-ccCH-HHHHHHHHhcCceEEEeeccC
Confidence 33 2222 689999999999999999874
No 73
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.34 E-value=98 Score=27.32 Aligned_cols=152 Identities=10% Similarity=0.046 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCC-hhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDH-DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g-~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
+.++..+.+..+.+.|++.|=.- .++... ......=+++++.-.+++.|..-... .++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~----------~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGAH----------WYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECCC----------CcCHHHHHH-HHH
Confidence 56777788888999999988542 122100 01111222333322234444433221 134443332 222
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCC-HHHHHHHhccCCceEEecccCccCc-Chh
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEAS-ADTIRRAHAVHPITAVQMEYSLWTR-EIE 195 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~ 195 (242)
.|+. .++.++..|-+. . -++.+.+++++-.+- +.|=+-++ ..++..+++...++++|+..+..-. ..-
T Consensus 211 ~l~~-----~~l~~iEeP~~~---~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEE-----LGFFWYEDPLRE---A-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhh-----cCCCeEeCCCCc---h-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 3333 345566556432 2 346777888875554 34445577 8889999888778899987665432 122
Q ss_pred hhHHHHHHHhCCcEEec
Q 026166 196 DDIIPLCRELGIGIVAY 212 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~ 212 (242)
..+...|+.+|+.+...
T Consensus 282 ~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 282 MKTAHLAEAFGLDVELH 298 (368)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 78999999999998653
No 74
>PLN02363 phosphoribosylanthranilate isomerase
Probab=65.24 E-value=26 Score=29.52 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEecc
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQME 186 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 186 (242)
++.++.+ .++|.|++=+++..........+ ..+.+........++.+||. |-+++.+.++++..+++++|+.
T Consensus 57 ~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 57 ARDAAMA-----VEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred HHHHHHH-----HHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 5555544 46899999887543322223333 33444443333246789996 7889999999988899999984
No 75
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=64.88 E-value=39 Score=30.58 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=37.4
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHH
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMV 75 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~l 75 (242)
|.|+.+|...|.. .-+..-+.+++.+++..+.+.|+..+-.-=.||-++.+.+.+
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~ 206 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESL 206 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHH
Confidence 5589999887753 122223678888899999999998777667787544443333
No 76
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=64.08 E-value=94 Score=26.70 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=88.4
Q ss_pred cceecccccCCcCC-CCCCHHHHHHHHHHHHH-cCCCEEeCccccCCC--ChhHHHHHHHHhc--CCCCCEEEEeecCcc
Q 026166 23 RLGFGCGGLSGIYN-KPLSHEVGCSIIKETFN-RGITLFDTSDVYGVD--HDNEIMVGKALKQ--LPRDKIQLATKFGCF 96 (242)
Q Consensus 23 ~lglG~~~~~~~~~-~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~--g~~e~~lg~~l~~--~~R~~l~I~tK~~~~ 96 (242)
.|.||.+.-.. +. ...+.++..+.+...++ .|++.+|---.|+.. ..+-..+-++|+. ..+..+.|+.-+...
T Consensus 71 iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~ 149 (294)
T cd06543 71 IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVL 149 (294)
T ss_pred EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 35677665322 21 22355555555566665 499999965545421 1112344455543 122356666555433
Q ss_pred cCCCcccCCCCCHHHHHHHHHHHHHHcCC--CcccEEEeccCCC--CCCH-HHHHHHHHHHHHcCCcceEecCCCCHHHH
Q 026166 97 MLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDT--SVSI-EDTMGELKKLVEEGKIKYIGLSEASADTI 171 (242)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lh~p~~--~~~~-~~~~~~l~~l~~~G~i~~iGvS~~~~~~l 171 (242)
.. .++++.+ .+-+....-|+ ++|.++-+..-.. ..+. +.+..+.+.++.+=+--+=+ ++..++
T Consensus 150 p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~ 217 (294)
T cd06543 150 PT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAEL 217 (294)
T ss_pred CC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHH
Confidence 21 1333332 24444555564 4455444432222 1222 34555555555433222212 333333
Q ss_pred HHHhccCCce-EEecccCccCcChhhhHHHHHHHhCCcEEecccCcccc
Q 026166 172 RRAHAVHPIT-AVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 172 ~~~~~~~~~~-~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
-..+...|.. .+-..=.++.......+.++++++||+.++|-.+.+..
T Consensus 218 ~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 218 WAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 3344433311 11110012222223789999999999999999887655
No 77
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.07 E-value=20 Score=31.66 Aligned_cols=98 Identities=8% Similarity=0.008 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEE
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 183 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~---~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~ 183 (242)
++.+. +-.+-+.|.++|+++|++-..-.|..- .+.+++++++. +...++..++. .....++.+++.. .+.+
T Consensus 65 ~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g-~~~v 138 (347)
T PLN02746 65 VPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAG-AKEV 138 (347)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcC-cCEE
Confidence 44443 344667799999999998755454311 12344555554 32334544553 4788899888762 2222
Q ss_pred ec---------ccCccCcCh-----hhhHHHHHHHhCCcEE
Q 026166 184 QM---------EYSLWTREI-----EDDIIPLCRELGIGIV 210 (242)
Q Consensus 184 q~---------~~~~~~~~~-----~~~l~~~~~~~gi~v~ 210 (242)
.+ ..|+-.... -.+++++++++|+.+.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22 222211111 1579999999999885
No 78
>PRK12928 lipoyl synthase; Provisional
Probab=63.60 E-value=64 Score=27.66 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcC---Ccce---EecCCCCHHHHHHHhcc---CCceEEec-ccCc-------cCcC----hhhhH
Q 026166 140 VSIEDTMGELKKLVEEG---KIKY---IGLSEASADTIRRAHAV---HPITAVQM-EYSL-------WTRE----IEDDI 198 (242)
Q Consensus 140 ~~~~~~~~~l~~l~~~G---~i~~---iGvS~~~~~~l~~~~~~---~~~~~~q~-~~~~-------~~~~----~~~~l 198 (242)
...++.++.++.+++.| .+++ +|+ .-+.+++.+.+.. ..++.+.+ +|.. +.+. ....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 34678899999999988 3442 477 6677766655543 34444433 3322 1111 12667
Q ss_pred HHHHHHhCCcEEecccCcc
Q 026166 199 IPLCRELGIGIVAYSPLGR 217 (242)
Q Consensus 199 ~~~~~~~gi~v~a~spl~~ 217 (242)
-+++.+.|...++.+||-+
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 7888888998999888863
No 79
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=62.58 E-value=83 Score=27.47 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=56.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCC
Q 026166 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGI 207 (242)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi 207 (242)
++.++..|-. .++.+.+++++-.+. +.|=|-++...+.++++....+++|+....+-.- .++++.|+.+||
T Consensus 162 ~l~~iEqP~~------~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi 233 (327)
T PRK02901 162 PLEYVEQPCA------TVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGL 233 (327)
T ss_pred CceEEecCCC------CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCC
Confidence 5555555542 156666776664443 5566667888888888877788888877664432 568889999999
Q ss_pred cEEecccCccc
Q 026166 208 GIVAYSPLGRG 218 (242)
Q Consensus 208 ~v~a~spl~~G 218 (242)
.++..|.+..+
T Consensus 234 ~v~v~s~~es~ 244 (327)
T PRK02901 234 PVVVSSALDTS 244 (327)
T ss_pred cEEEeCCcccH
Confidence 99877766544
No 80
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=62.24 E-value=82 Score=27.11 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=58.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHh
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~ 205 (242)
.++.++..|-+. . +.+.++++.-.+ -+.|=|-++..++..+++....+++|+.....-.- ...++.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 466666666422 1 556666665444 36666778888888888876677788766554321 127899999999
Q ss_pred CCcEEecccCcccc
Q 026166 206 GIGIVAYSPLGRGF 219 (242)
Q Consensus 206 gi~v~a~spl~~G~ 219 (242)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999777666554
No 81
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=62.14 E-value=1.2e+02 Score=27.16 Aligned_cols=147 Identities=13% Similarity=-0.003 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChh-HHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDN-EIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~-e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
+.++..+.+..+++.|++.|=.-- |..... ....=+++++.-.+++.|..-.... ++.+...+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~~~di~~v~avRe~~G~~~~l~vDaN~~----------w~~~~A~~---- 223 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI--GGAPLDEDLRRIEAALDVLGDGARLAVDANGR----------FDLETAIA---- 223 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHHHHhcCCCCeEEEECCCC----------CCHHHHHH----
Confidence 556667777888899999875321 110001 1112223333222344444433221 34443222
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCCHHHHHHHhccCCc----eEEecccCccCcC
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPI----TAVQMEYSLWTRE 193 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~-~iGvS~~~~~~l~~~~~~~~~----~~~q~~~~~~~~~ 193 (242)
.++.| +..++.++..|-+.. -++.+.+|++...+- +.|=|.++...+..+++.... +++|+...-.-.-
T Consensus 224 ~~~~l--~~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGi 297 (385)
T cd03326 224 YAKAL--APYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHHh--hCcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCH
Confidence 33333 234677777775432 467777888876664 667778899999999887554 8888876543321
Q ss_pred -hhhhHHHHHHHhCCc
Q 026166 194 -IEDDIIPLCRELGIG 208 (242)
Q Consensus 194 -~~~~l~~~~~~~gi~ 208 (242)
.-..+.+.|+.+|+.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 127899999999997
No 82
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=61.86 E-value=89 Score=25.65 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL 120 (242)
.....+++.+|.+.|+..|=.++|...-..... ....+ . ++-|-+-+-... .+++.+.+- +
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~-~~~~~---~--~i~Il~GiEi~~---------~~~~~~~~~----~ 75 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKP-ELEDL---L--GFEIFRGVEIVA---------SNPSKLRGL----V 75 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhH-HHHHh---c--CCcEEeeEEEec---------CCHHHHHHH----H
Confidence 456789999999999998877777532001111 11111 1 233322221111 234444333 3
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-------CCHHHHHHHhccCCceEEecccCccCcC
Q 026166 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-------ASADTIRRAHAVHPITAVQMEYSLWTRE 193 (242)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~-------~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (242)
++. .+..|++.+| |.. +.+. ..+.+.+.|.-||--. +....++.+.+.. ..+.+.++.+.+.
T Consensus 76 ~~~-~~~~d~v~v~-~~~----~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~ 144 (237)
T PRK00912 76 GKF-RKKVDVLAVH-GGD----EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKS 144 (237)
T ss_pred Hhc-cCcccEEEEe-CCC----HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhh
Confidence 332 2346888888 221 1121 3577788888777653 2222333333332 2344455443211
Q ss_pred ----------hhhhHHHHHHHhCCcEE
Q 026166 194 ----------IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 194 ----------~~~~l~~~~~~~gi~v~ 210 (242)
....++..|++.|+.++
T Consensus 145 ~~~~r~~~~~~~~~~~~~~~~~g~pii 171 (237)
T PRK00912 145 RGGRRARTLSNFRDNLALARKYDFPLV 171 (237)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 11479999999998876
No 83
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=61.54 E-value=97 Score=26.00 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CCHH-H---HHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSIE-D---TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~~-~~~~-~---~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~ 180 (242)
.+++.+.+.+++.+ .-|.+.||+-- --+|+.. .+.+ | +...++.+++.-.+ -+.+-+++++.++.+++....
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 56677766666554 55889999932 2234322 2223 2 44555555554223 388889999999999987544
Q ss_pred eEEecccCccCcChhhhHHHHHHHhCCcEEecc
Q 026166 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 181 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 213 (242)
.++-+..- . .+++++.++++|..++.+.
T Consensus 98 iINsis~~--~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDVSGG--Q---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEECCCC--C---CchhHHHHHHcCCcEEEEe
Confidence 34443322 1 2579999999999999854
No 84
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=61.54 E-value=79 Score=26.68 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=53.8
Q ss_pred CHH-HHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCC--CEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 40 SHE-VGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD--KIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~--~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
+.+ +..++.+.|.+.|..|+=|+..|+.+|...+.+.-..+..++. .--+..|...-. .+.+....-+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGI---------rt~~~A~~~i 214 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGV---------RTAEDAAQYL 214 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCC---------CCHHHHHHHH
Confidence 444 5889999999999999999999985454554443332211110 111444553222 3578888888
Q ss_pred HHHHHHcCCCccc
Q 026166 117 EASLKRLDVDYID 129 (242)
Q Consensus 117 ~~sL~~L~~d~iD 129 (242)
+.--+.||.+|++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999998877
No 85
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=61.39 E-value=49 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=25.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHH
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 171 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l 171 (242)
+|.++||..++ . +..+.+.+......++++|++......+
T Consensus 74 ~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 68899998752 1 2334444333356789999998765544
No 86
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=60.98 E-value=14 Score=26.25 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHhccCCceEEecccCccCc-ChhhhHHHHHHHhCCcEEeccc
Q 026166 164 SEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 164 S~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~sp 214 (242)
|.++...+.++++...++++|+...-.-. ..-..+.++|+++|+.+...+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 45778888888888778888876444321 1127899999999999998886
No 87
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.86 E-value=90 Score=25.42 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc-cccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTS-DVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~ 117 (242)
.+.++..++++...+.||..|++. +..+ ....+.+.+..+..+...+...+. ...+.++..++
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~ 74 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFAS--EDDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVE 74 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSS--HHHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccC--HHHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHH
Confidence 377888999999999999999999 3333 223344444444322332322222 23555666665
Q ss_pred HHHHHcCCCcccEEEeccCC-----CCCC----HHHHHHHHHHHHHcCCcceEecCC---CCHHHHHHHhc
Q 026166 118 ASLKRLDVDYIDLYYQHRVD-----TSVS----IEDTMGELKKLVEEGKIKYIGLSE---ASADTIRRAHA 176 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~-----~~~~----~~~~~~~l~~l~~~G~i~~iGvS~---~~~~~l~~~~~ 176 (242)
.. ...|.+.+.++.--++. .... ++.+.+.++..++.|..-.+++.. ++++.+.++.+
T Consensus 75 ~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 75 AA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp HH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred hh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 44 46787777765432220 0111 334556667777888877887754 45555554443
No 88
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=60.68 E-value=91 Score=25.40 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHH---HHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIM---VGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~---lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
+.++...+.+.|.++|..|+=|+..|+.+|.+... +.+.++ .+ +-.|...-. .+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi---------rt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV---------RTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC---------CCHHHHHHHH
Confidence 56778899999999999999999988743444333 344433 22 334442221 2577788888
Q ss_pred HHHHHHcCCCc
Q 026166 117 EASLKRLDVDY 127 (242)
Q Consensus 117 ~~sL~~L~~d~ 127 (242)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999865
No 89
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=59.99 E-value=1e+02 Score=25.79 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc--CCceEEe
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQ 184 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~--~~~~~~q 184 (242)
.+++.+.+...+.++ -|.|.||+-. .|. ..+-.+.+..+....++-.=.-|.+-+++++.++.+++. ...-+|-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 456777777777765 4999999865 243 223233333322223321112378889999999999986 3333333
Q ss_pred cccCccCc-ChhhhHHHHHHHhCCcEEecccCccc
Q 026166 185 MEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 185 ~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
+ +.... .....+++.++++|..++.+..-..|
T Consensus 99 I--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 99 I--NLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred C--CCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3 32221 11267889999999999887653334
No 90
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=59.59 E-value=1.2e+02 Score=26.52 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEe--------cc-CCCCCCHHHHHHHHHHHHHcC-CcceEecC---CCCHHH
Q 026166 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQ--------HR-VDTSVSIEDTMGELKKLVEEG-KIKYIGLS---EASADT 170 (242)
Q Consensus 104 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~l--------h~-p~~~~~~~~~~~~l~~l~~~G-~i~~iGvS---~~~~~~ 170 (242)
.+.++.+.+.+ +-+.|.+.|+++|.+-.. +. +. ..+ .|+.++++.+.- ..+...+. ..+.+.
T Consensus 18 ~~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~-~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~d 92 (333)
T TIGR03217 18 RHQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFS-AHT---DLEYIEAAADVVKRAKVAVLLLPGIGTVHD 92 (333)
T ss_pred CCcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCC-CCC---hHHHHHHHHHhCCCCEEEEEeccCccCHHH
Confidence 34566666654 666699999999998521 11 11 112 233444433322 23333232 235677
Q ss_pred HHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 171 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 171 l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
++.+.+. .++.+.+-.+.-+.+...+.+++++++|..+...
T Consensus 93 l~~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 93 LKAAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 7777764 3445554444433333478899999999876543
No 91
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.10 E-value=52 Score=26.87 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhc---cCCceEE
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA---VHPITAV 183 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~---~~~~~~~ 183 (242)
++.+...+ +-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++......++.+.+ ...++.+
T Consensus 11 ~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44455444 5567999999999887 333222233455555555555 4445566666776666544 2334444
Q ss_pred ecccCccC--------------cChhhhHHHHHHHhCCcE
Q 026166 184 QMEYSLWT--------------REIEDDIIPLCRELGIGI 209 (242)
Q Consensus 184 q~~~~~~~--------------~~~~~~l~~~~~~~gi~v 209 (242)
.+-.+.-+ ...-.+.++++++.|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 43333222 111267899999999988
No 92
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=59.02 E-value=1.1e+02 Score=25.91 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---c-------cccCCCChhHHHHHHHHhcCCCC-CEEEEeecCcccCCCcccCCCCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDT---S-------DVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGS 108 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt---A-------~~Yg~~g~~e~~lg~~l~~~~R~-~l~I~tK~~~~~~~~~~~~~~~~ 108 (242)
+.++..+..+.+.+.|+..|+. + ..|+. +.+.+.+.++...+. ++-|..|+....
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~---~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----------- 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT---DPEAVAEIVKAVKKATDVPVIVKLTPNV----------- 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC---CHHHHHHHHHHHHhccCCCEEEEeCCCc-----------
Confidence 5677888888888899998885 1 23432 556666666543222 677888875321
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEE------ecc--CCC---------C--CCHHHHHHHHHHHHHcCCcceEecCCC-CH
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYY------QHR--VDT---------S--VSIEDTMGELKKLVEEGKIKYIGLSEA-SA 168 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~------lh~--p~~---------~--~~~~~~~~~l~~l~~~G~i~~iGvS~~-~~ 168 (242)
+.+. .+-+.++..|.|.|++.- +|. ..+ . ....-.++.+.++++.=.+--||+... ++
T Consensus 166 -~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 166 -TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred -hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 1222 233456778887776531 111 000 0 001125677777777656888888874 78
Q ss_pred HHHHHHhccCCceEEecccCccC-----cChhhhHHHHHHHhCC
Q 026166 169 DTIRRAHAVHPITAVQMEYSLWT-----REIEDDIIPLCRELGI 207 (242)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~~~~~~-----~~~~~~l~~~~~~~gi 207 (242)
+.+.+++... .+.+|+-=.++. +....++.++.+++|.
T Consensus 244 ~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 244 EDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888888754 577776322222 1123667777777774
No 93
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=58.77 E-value=22 Score=26.66 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.3
Q ss_pred cChhhhHHHHHHHhCCcEEecccCc
Q 026166 192 REIEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 192 ~~~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
++.-.++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445889999999999999998876
No 94
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=58.76 E-value=1.3e+02 Score=26.79 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=58.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCC----cceEecC--CCCHHHHHHHhcc---C------CceEEe
Q 026166 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIRRAHAV---H------PITAVQ 184 (242)
Q Consensus 131 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~----i~~iGvS--~~~~~~l~~~~~~---~------~~~~~q 184 (242)
+-||.|++. .+++++++++.+..++.. +-|+=+. |-+.++..++.+. . +..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 789999642 357888888888765433 2233222 5566665555543 4 568999
Q ss_pred cccCccCcC--------hhhhHHHHHHHhCCcEEecccCc
Q 026166 185 MEYSLWTRE--------IEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 185 ~~~~~~~~~--------~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
++||+.... .-..+.+.++++||.+......+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G 351 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERG 351 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 999997542 11568888899999999888764
No 95
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=58.46 E-value=1.1e+02 Score=25.50 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc-ccCC-CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD-VYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~-~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~ 117 (242)
+.+|+ ..|++.|...||.-+ .-|. +.....++.+..+ ......-++..++-.. +.|..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~-~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREIVA-AVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHH-HcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 55555 467889999999633 1221 1335666665554 3333455777776443 34555555444
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHH-------HHcCCcceEecCCCC------HHHHHHHhccCCceEEe
Q 026166 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKL-------VEEGKIKYIGLSEAS------ADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l-------~~~G~i~~iGvS~~~------~~~l~~~~~~~~~~~~q 184 (242)
..- ..|+||+-+=+.-..+ .++..+.|+.+ ..+.++-+++.+.+. +..+.++.....++.++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred HHH-hcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 443 4589998876663332 33333333332 234567788888873 55565665555566666
Q ss_pred cc------cCccCc---ChhhhHHHHHHHhCCcE
Q 026166 185 ME------YSLWTR---EIEDDIIPLCRELGIGI 209 (242)
Q Consensus 185 ~~------~~~~~~---~~~~~l~~~~~~~gi~v 209 (242)
+. -++++. ..-.++++.|+++|+.+
T Consensus 150 lDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 150 LDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 52 122222 12267899999999865
No 96
>PRK07945 hypothetical protein; Provisional
Probab=57.34 E-value=1.3e+02 Score=26.26 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCC----CChhHHHH----HHH--HhcCCCCCEEEEeecCcccCCCcccCCCCCHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGV----DHDNEIMV----GKA--LKQLPRDKIQLATKFGCFMLDGVSIGVKGSPE 110 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----~g~~e~~l----g~~--l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~ 110 (242)
.....+++.+|.+.|+..+=.++|.-. .+.+..-+ ... +++.- .++.| +.|....- .++...+
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky-~~I~I--l~GiE~d~----~~~g~~~ 182 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEEL-APFRI--LTGIEVDI----LDDGSLD 182 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhc-CCceE--EEEeEecc----cCCCCcc
Confidence 344789999999999998887777432 01112211 111 12111 12333 33221100 0011122
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------------CCHHHHHHHh
Q 026166 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE---------------ASADTIRRAH 175 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~---------------~~~~~l~~~~ 175 (242)
.. ++.|+. .||+ +.-+|+... .+..+..+.|.++.+.+.+..+|=-. +..+.+.+++
T Consensus 183 ~~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~ 254 (335)
T PRK07945 183 QE----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAAC 254 (335)
T ss_pred hh----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHH
Confidence 22 223333 5666 778897643 33456778888888888887777321 2222222222
Q ss_pred ccCCceEEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 176 AVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 176 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
..... .+.++-+.+...+...+++.|++.|+.++
T Consensus 255 ~e~g~-~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 255 REHGT-AVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HHhCC-EEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 22111 22222233333344678888888888764
No 97
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=57.23 E-value=39 Score=29.87 Aligned_cols=87 Identities=10% Similarity=0.204 Sum_probs=54.8
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--CCCHHHHHHHhc---cCCceEEecccCc
Q 026166 130 LYYQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRAHA---VHPITAVQMEYSL 189 (242)
Q Consensus 130 l~~lh~p~~~-----------~~~~~~~~~l~~l~~-~G~---i~~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~ 189 (242)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+. |.+.+++.++.+ ..++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3679988632 236788888877654 442 3344333 444566555543 3456788899998
Q ss_pred cCcC----hh----hhHHHHHHHhCCcEEecccCc
Q 026166 190 WTRE----IE----DDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 190 ~~~~----~~----~~l~~~~~~~gi~v~a~spl~ 216 (242)
+... +. ..+.++.+++|+.++.....+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G 332 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRG 332 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 7531 11 446777888999999887763
No 98
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=56.52 E-value=76 Score=24.08 Aligned_cols=63 Identities=8% Similarity=0.163 Sum_probs=44.5
Q ss_pred CCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 026166 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (242)
Q Consensus 83 ~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~ 155 (242)
+|=-+.|+-|++.. ..+..+++.+.++++... +...|++++.......+..+....|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45567777776532 457888888888888764 3468999999887666677776666665543
No 99
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=56.19 E-value=36 Score=31.20 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=43.0
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEeccc
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEY 187 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 187 (242)
...+|.|++-+.+........+.+.+ ..+.+... ++.+||- |-+++.+.++.+...++++|+.-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG 337 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHG 337 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCC
Confidence 46689999888654332222333333 33332222 8899998 78899999999888999999854
No 100
>PLN00191 enolase
Probab=55.93 E-value=1e+02 Score=28.29 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=81.4
Q ss_pred hHHHHHHHHhc-CCCCCEEEEeecCcccCC--Cccc-----------CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccC
Q 026166 71 NEIMVGKALKQ-LPRDKIQLATKFGCFMLD--GVSI-----------GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV 136 (242)
Q Consensus 71 ~e~~lg~~l~~-~~R~~l~I~tK~~~~~~~--~~~~-----------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 136 (242)
+-+++-+++.. ....++.|..-+...... .+.. ....+++.+.+-+...+ +..++.++..|
T Consensus 245 al~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~-----~~y~I~~IEDP 319 (457)
T PLN00191 245 GLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFV-----SDYPIVSIEDP 319 (457)
T ss_pred HHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHh-----hcCCcEEEECC
Confidence 34445666654 222457777766543211 0001 01135555544444433 33467788887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceEecC--CCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHhCCcEEec
Q 026166 137 DTSVSIEDTMGELKKLVEEGKIKYIGLS--EASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 137 ~~~~~~~~~~~~l~~l~~~G~i~~iGvS--~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~ 212 (242)
-.. +-|+.+.+|.++.+|.-+|=- ..++..+.++++....+++++..+-+-.- ...++++.|+.+|+.++.-
T Consensus 320 l~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 320 FDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred CCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 543 347777778888777766622 25688999999887788888877765432 2378999999999999764
No 101
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=55.82 E-value=1.8e+02 Score=27.20 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=50.0
Q ss_pred ccEEEeccCCCCCC-HHHHHHHHHHHH------------------HcCCcceEecCC------CCHHHHHHHhccCCceE
Q 026166 128 IDLYYQHRVDTSVS-IEDTMGELKKLV------------------EEGKIKYIGLSE------ASADTIRRAHAVHPITA 182 (242)
Q Consensus 128 iDl~~lh~p~~~~~-~~~~~~~l~~l~------------------~~G~i~~iGvS~------~~~~~l~~~~~~~~~~~ 182 (242)
++++.+|.|..... ....-.+++.++ .+++|.-||.++ .+...++++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999976532 211212232222 235688888774 34566777776544444
Q ss_pred Eec----------------ccCccC-cChhhhHHHHHH-HhCCcEEecccCc
Q 026166 183 VQM----------------EYSLWT-REIEDDIIPLCR-ELGIGIVAYSPLG 216 (242)
Q Consensus 183 ~q~----------------~~~~~~-~~~~~~l~~~~~-~~gi~v~a~spl~ 216 (242)
+.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 321 233322 222244666666 5699998878865
No 102
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=55.77 E-value=1.7e+02 Score=26.90 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHc-CCcc---------eEecCCCCHHH---
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT--SVSIEDTMGELKKLVEE-GKIK---------YIGLSEASADT--- 170 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~~l~~l~~~-G~i~---------~iGvS~~~~~~--- 170 (242)
.++.+.... +-..|.+.|++.|.+.==...+. ..--++.|+.++.+++. ..++ .+|.+++.-+.
T Consensus 22 ~~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 344555444 55668999999999830000110 00012257778777765 2233 24666654443
Q ss_pred -HHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 171 -IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 171 -l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++.+.+ ..++++.+-..+.+...-...+++++++|..+.
T Consensus 101 ~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~ 140 (448)
T PRK12331 101 FVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQ 140 (448)
T ss_pred HHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEE
Confidence 334443 345555554444333334678999999997654
No 103
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=55.45 E-value=56 Score=26.90 Aligned_cols=105 Identities=21% Similarity=0.192 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEE----------eecCcccC---C---Cccc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLA----------TKFGCFML---D---GVSI 103 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~----------tK~~~~~~---~---~~~~ 103 (242)
+.+...+++++|-..|.+|+|-|. .-.++..+.. ...=-+.++ .|.|...- + ....
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAa-------dp~LV~~~~~-~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~q 96 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAA-------DPELVKLAKS-LSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQ 96 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecC-------CHHHHHHHHH-hCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhc
Confidence 788999999999999999999888 3444544433 221122222 11111000 0 0112
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 026166 104 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (242)
Q Consensus 104 ~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G 156 (242)
...++.+.+.+-.++..+.| .|..+---..+..++++..+.-++|++.|
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LL----P~~~LsVTVPHiL~ld~Qv~LA~~L~~~G 145 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLL----PDITLSVTVPHILPLDQQVQLAEDLVKAG 145 (242)
T ss_pred CCeecHHHHHHHHHHHHHhC----CCCceEEecCccccHHHHHHHHHHHHHhC
Confidence 23455666666556665555 22222222334456677777767776654
No 104
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=55.14 E-value=85 Score=28.65 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec-cCC----------CCC-CHHH---HH-HHHHHHHHcCCcceEecCCCCH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH-RVD----------TSV-SIED---TM-GELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~----------~~~-~~~~---~~-~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
.+.+.+.+.++..++ ++.++|.+|.+- .|. ... +.++ .+ .+.+.|.+.|. ..+++++|.-
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 457777777775554 788888887661 121 001 1222 22 34445556675 4588888774
No 105
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=55.03 E-value=99 Score=25.77 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCC-----------------CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV-----------------DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~ 101 (242)
.+.++..++.++|-+.|+.||=|...... +-.+-.++...- .....++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A--~tgkPvIlSTG~-------- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIA--KTGKPVILSTGM-------- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHH--TT-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHH--HhCCcEEEECCC--------
Confidence 47899999999999999999977653331 001122222222 133445565544
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHH-HHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 026166 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIE-DTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (242)
Q Consensus 102 ~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~-~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~ 174 (242)
-+.+.|+++++...+.-+ .++.++|.... ..+.+ --++.|..|++.=- --||.|.|+......+
T Consensus 123 -----stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 123 -----STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPI 188 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHH
T ss_pred -----CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHH
Confidence 246777777777655544 58999997642 22332 24667777775433 5679999886543333
No 106
>PRK00077 eno enolase; Provisional
Probab=54.99 E-value=1.7e+02 Score=26.63 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred HHHHHHhc--C-CCCCEEEEeecCcccCC-Cccc---CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHH
Q 026166 74 MVGKALKQ--L-PRDKIQLATKFGCFMLD-GVSI---GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTM 146 (242)
Q Consensus 74 ~lg~~l~~--~-~R~~l~I~tK~~~~~~~-~~~~---~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~ 146 (242)
.+-++++. . +-+++.|..-+...... ...+ ...++++.....+.+.++. .++.++..|-+.. -|
T Consensus 221 ~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~ 291 (425)
T PRK00077 221 LILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DW 291 (425)
T ss_pred HHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cH
Confidence 34555543 1 34678777776321100 0000 1124555555555555554 3577888876443 35
Q ss_pred HHHHHHHHcC--CcceEecCC--CCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHhCCcEEe
Q 026166 147 GELKKLVEEG--KIKYIGLSE--ASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 147 ~~l~~l~~~G--~i~~iGvS~--~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a 211 (242)
+.+.+|.+.- ++.-+|=-. .++..+..+++....+++|+..+-+-.- ...++...|+.+|+.++.
T Consensus 292 ~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 292 EGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred HHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 5666666653 455433332 3689999999887788888877765432 227899999999997654
No 107
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=54.78 E-value=58 Score=28.46 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCC---CCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLP---RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~---R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
.+.++..++++.+.+.|++=|= .-|..+.-.+.+-+.++... -.++-++|-... -..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvR---lTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~-----------------L~~ 102 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVR---LTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVL-----------------LAR 102 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEE---EeCCCchhhcCHHHHHHHHhhcccceEEEecchhh-----------------HHH
Confidence 3789999999999999999774 33431222222333333222 256666665422 223
Q ss_pred HHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCCc----ceEecCCCCHHHHHHHhcc
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGKI----KYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~i----~~iGvS~~~~~~l~~~~~~ 177 (242)
...-|+.-|+++|- +-||..++ ...++.+++.+++.++.|.- ..+=+-+.+.+++..+++.
T Consensus 103 ~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 103 RAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 44455666766655 34444433 22367788888888888762 3444444555555544443
No 108
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=54.38 E-value=78 Score=25.97 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..++.+.+.+.|..|+=|+..|+.+|.+.+.+....+. -+.++ ..|...-. .+.+...+-++.-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~--~IKasGGI---------rt~~~a~~~i~aG 201 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRV--GVKASGGI---------RTLEDALAMIEAG 201 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCc--eEEeeCCc---------CCHHHHHHHHHcC
Confidence 678889999999999999999999997657777777666553 22332 23332111 2355555555555
Q ss_pred HHHcCCC
Q 026166 120 LKRLDVD 126 (242)
Q Consensus 120 L~~L~~d 126 (242)
-.|+|+.
T Consensus 202 A~riGtS 208 (221)
T PRK00507 202 ATRLGTS 208 (221)
T ss_pred cceEccC
Confidence 5555553
No 109
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=54.17 E-value=1.2e+02 Score=24.83 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEee--------------cCcccCCCcccCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATK--------------FGCFMLDGVSIGV 105 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK--------------~~~~~~~~~~~~~ 105 (242)
+.+++.+++ +.|+..+..+...-. +-..+.++.+....+++.++.- .|....
T Consensus 82 s~~d~~~~l----~~G~~~v~ig~~~~~---~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~------- 147 (243)
T cd04731 82 SLEDARRLL----RAGADKVSINSAAVE---NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT------- 147 (243)
T ss_pred CHHHHHHHH----HcCCceEEECchhhh---ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec-------
Confidence 455555554 468887776655432 3445555555443344554432 221110
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEE
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI-EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAV 183 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~-~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~ 183 (242)
..+.. .+-+.++.+|+ |.+.+|..+..... .--|+.+.++++.-.+.-|.... .+++.+.++++....+.+
T Consensus 148 ~~~~~----~~~~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 148 GLDAV----EWAKEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred CCCHH----HHHHHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 01111 22244456665 55666665432111 11356666666655555555444 467888888776455545
Q ss_pred ecccCccCcCh-hhhHHHHHHHh
Q 026166 184 QMEYSLWTREI-EDDIIPLCREL 205 (242)
Q Consensus 184 q~~~~~~~~~~-~~~l~~~~~~~ 205 (242)
.+---++.... ..++.++|++|
T Consensus 221 ~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 221 LAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred EEeHHHHcCCCCHHHHHHHHhhC
Confidence 44222222111 25666777654
No 110
>PRK05414 urocanate hydratase; Provisional
Probab=53.99 E-value=33 Score=31.78 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEe--Ccccc---CC----CChhHHHHHHHHhc---CCC
Q 026166 17 QGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFD--TSDVY---GV----DHDNEIMVGKALKQ---LPR 84 (242)
Q Consensus 17 ~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D--tA~~Y---g~----~g~~e~~lg~~l~~---~~R 84 (242)
|...-|++.+-...+-..|.. . +-+.+.-+.|++.+- ||-.| |. .|+-|+++.-+-+. ..+
T Consensus 94 th~~APRVliaN~~lVp~wa~---~----e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~ 166 (556)
T PRK05414 94 THPDAPRVLIANSNLVPHWAN---W----EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLA 166 (556)
T ss_pred CCCCCCeEEEEcCccccCCCC---H----HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCc
Confidence 344456665544333223432 2 344555667876554 44433 11 15667766555443 346
Q ss_pred CCEEEEeecCcccCCCc---------ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 026166 85 DKIQLATKFGCFMLDGV---------SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 155 (242)
Q Consensus 85 ~~l~I~tK~~~~~~~~~---------~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~ 155 (242)
-++|+++-++.-...++ ......++..|+ +|+.+.|+|.+ ..+++++++..++.+++
T Consensus 167 G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~ 232 (556)
T PRK05414 167 GRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAA 232 (556)
T ss_pred eeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHc
Confidence 78899888875443221 011233444444 67788898853 24689999999999999
Q ss_pred CCcceEecCCCCHHHHHHHhcc
Q 026166 156 GKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 156 G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
|+..+||+-..-.+.++++++.
T Consensus 233 ~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 233 GEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred CCceEEEEeccHHHHHHHHHHc
Confidence 9999999999999999999876
No 111
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=53.86 E-value=1.5e+02 Score=25.73 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCCh----hHHHHHHHHhcCC-CCCEEEEeecCcccCCCcccCCCCCHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHD----NEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~----~e~~lg~~l~~~~-R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (242)
.+.++..++++.+.+.|+..|.- .|..+. -..++..+ ++.. -.++.|+|-.. .+.
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i-~~~~~l~~i~itTNG~----------------ll~ 104 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARL-GKLPGLEELSLTTNGS----------------RLA 104 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHH-HhCCCCceEEEEeChh----------------HHH
Confidence 58899999999999999988863 342111 22223222 2111 12455555421 122
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC--c--ceEecCCCCHHHHHHHhcc---C
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK--I--KYIGLSEASADTIRRAHAV---H 178 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~--i--~~iGvS~~~~~~l~~~~~~---~ 178 (242)
+ .-+.|...|++++- +-++.+++ ...++.+++.++.+++.|. + ..+.+...+.+++.++++. .
T Consensus 105 ~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 105 R-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRER 182 (329)
T ss_pred H-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 2 33455666777665 34555432 1346789999999999885 2 3444455666666666554 3
Q ss_pred CceEEecccCcc
Q 026166 179 PITAVQMEYSLW 190 (242)
Q Consensus 179 ~~~~~q~~~~~~ 190 (242)
.+++.-++|.++
T Consensus 183 gi~~~~ie~mP~ 194 (329)
T PRK13361 183 GLDIAFIEEMPL 194 (329)
T ss_pred CCeEEEEecccC
Confidence 344444444443
No 112
>PLN02540 methylenetetrahydrofolate reductase
Probab=53.80 E-value=2e+02 Score=27.27 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCC-CEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~-~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
.+...+.+++-.+.|-.|+|.+..-|. ..++..+.-+.. ..+. .+-..-.+.... .+...+...++..
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgG-st~~~Tl~la~~-lq~~~Gie~i~HLTCrd---------~n~~~L~~~L~~a 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGG-STADLTLDIANR-MQNMICVETMMHLTCTN---------MPVEKIDHALETI 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCC-CcHHHHHHHHHH-HHHhcCCCeeEEeeecC---------CCHHHHHHHHHHH
Confidence 345556666666789999998776663 345555443332 1122 222333332222 4567777766666
Q ss_pred HHHcCCCcccEEEeccCCCC---------CCHHHHHHHHHHHHHc-CCcceEecCCCCH------------------HHH
Q 026166 120 LKRLDVDYIDLYYQHRVDTS---------VSIEDTMGELKKLVEE-GKIKYIGLSEASA------------------DTI 171 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~---------~~~~~~~~~l~~l~~~-G~i~~iGvS~~~~------------------~~l 171 (242)
..+|++ .++.|..-.+. ..+..+.+.++.++++ |..-.|||+.+.. ..+
T Consensus 83 -~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl 159 (565)
T PLN02540 83 -KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDL 159 (565)
T ss_pred -HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHH
Confidence 888876 45555542211 1123355556666654 4566788885431 234
Q ss_pred HHHhcc----CCceEEecccCccCcChhhhHHHHHHHhCCc
Q 026166 172 RRAHAV----HPITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (242)
Q Consensus 172 ~~~~~~----~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 208 (242)
..+.+. ..+.+-|+-|+.-. -.+.++.|++.||.
T Consensus 160 ~~Lk~KvdAGAdFiITQlfFD~d~---f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 160 AYLKEKVDAGADLIITQLFYDTDI---FLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHHHcCCCEEeeccccCHHH---HHHHHHHHHhcCCC
Confidence 444332 45666677665522 25788999999843
No 113
>smart00642 Aamy Alpha-amylase domain.
Probab=53.77 E-value=22 Score=27.70 Aligned_cols=20 Identities=10% Similarity=0.298 Sum_probs=16.6
Q ss_pred hhHHHHHHHhCCcEEecccC
Q 026166 196 DDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl 215 (242)
+.+++.|+++||.|+.=-++
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 73 KELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 78999999999999854444
No 114
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=53.66 E-value=32 Score=31.73 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=88.6
Q ss_pred CCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEe--Ccccc---CC----CChhHHHHHHHHhc---CC
Q 026166 16 SQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFD--TSDVY---GV----DHDNEIMVGKALKQ---LP 83 (242)
Q Consensus 16 ~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D--tA~~Y---g~----~g~~e~~lg~~l~~---~~ 83 (242)
+|-..-|++.+-...+-..|.. . +-+...-+.|++.+- ||-.| |. .|+-|+++.-+-+. ..
T Consensus 84 ~th~~APRVliaNs~lVp~wa~---~----e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L 156 (545)
T TIGR01228 84 KTHENAPRVLIANSNLVPHWAD---W----EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSL 156 (545)
T ss_pred cCCCCCCeEEEEcCccccCCCC---H----HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCC
Confidence 3444556666654433333432 2 344555667876554 34333 11 15667766554433 34
Q ss_pred CCCEEEEeecCcccCCCc---------ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 026166 84 RDKIQLATKFGCFMLDGV---------SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE 154 (242)
Q Consensus 84 R~~l~I~tK~~~~~~~~~---------~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~ 154 (242)
+-++|+++-++.-...++ ......++..|+ +|+.+.|+|.+ ..+++++++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHH
Confidence 678888888875433221 011233444444 57778898853 2468899999999999
Q ss_pred cCCcceEecCCCCHHHHHHHhcc
Q 026166 155 EGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 155 ~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
+|+..+||+-..-.+.++++.+.
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHc
Confidence 99999999999999999999875
No 115
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=53.50 E-value=1.4e+02 Score=25.40 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCC-CEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD-KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~-~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
.+...+.++.-.+.+..|+..+..-|. ...+..+.-+-. ..++ .+-....+.... .+...+...+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~-~~~~~t~~~~~~-l~~~~g~~~i~Hltcr~---------~~~~~l~~~L~~~ 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGG-TTAELTLTIASR-AQNVVGVETCMHLTCTN---------MPIEMIDDALERA 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCC-cchhhHHHHHHH-HHHhcCCCeeEEeccCC---------CCHHHHHHHHHHH
Confidence 344556666667788999998776542 233443333322 1111 222233332222 3456666655554
Q ss_pred HHHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHc-CCcceEecCCCC--------HH-HHHHHhcc---
Q 026166 120 LKRLDVDYIDLYYQHRVDT---------SVSIEDTMGELKKLVEE-GKIKYIGLSEAS--------AD-TIRRAHAV--- 177 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~---------~~~~~~~~~~l~~l~~~-G~i~~iGvS~~~--------~~-~l~~~~~~--- 177 (242)
..+|++ +++.|-...+ ...++.+.+.++.+++. |.--.||+..+. .+ +++.+.+.
T Consensus 84 -~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~a 160 (281)
T TIGR00677 84 -YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDA 160 (281)
T ss_pred -HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHc
Confidence 778875 3455543221 11233466666666664 443578888763 11 23444332
Q ss_pred -CCceEEecccCccCcChhhhHHHHHHHhCCcE
Q 026166 178 -HPITAVQMEYSLWTREIEDDIIPLCRELGIGI 209 (242)
Q Consensus 178 -~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 209 (242)
..+.+-|+-|+.-. -.++++.|++.|+.+
T Consensus 161 GA~f~iTQ~~Fd~~~---~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 161 GADFIITQLFYDVDN---FLKFVNDCRAIGIDC 190 (281)
T ss_pred CCCEeeccceecHHH---HHHHHHHHHHcCCCC
Confidence 34666676565522 267888999987654
No 116
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.42 E-value=1.3e+02 Score=25.03 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=57.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCc-ChhhhHHHHHHHhC
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELG 206 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~g 206 (242)
.++.++..|-+ .+.++.+.++. .+.=-+.|=|-++...+..+++....+++|+.....-. ..-..+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 46666766643 23466666666 33334667677777888888887778888887654332 12278999999999
Q ss_pred CcEEecccCccc
Q 026166 207 IGIVAYSPLGRG 218 (242)
Q Consensus 207 i~v~a~spl~~G 218 (242)
+.++..+-+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 998765544433
No 117
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.30 E-value=2.4e+02 Score=28.01 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCcceEecCCCCHHHHHHHhccCCceEEecc
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~ 186 (242)
.+.+++-++...........-+|+|+..+... .+.+++|-+..++ ..+++|-++|.....+..+... |.++.
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR----Cq~f~ 174 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR----CLQFN 174 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh----eEEEe
Confidence 45555555443322222345688887775432 3567777777766 5899999999765555454432 45556
Q ss_pred cCccCcCh-hhhHHHHHHHhCCc
Q 026166 187 YSLWTREI-EDDIIPLCRELGIG 208 (242)
Q Consensus 187 ~~~~~~~~-~~~l~~~~~~~gi~ 208 (242)
|..+.... ..-|...|++.||.
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCC
Confidence 66655431 13344556666664
No 118
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=52.48 E-value=1.7e+02 Score=26.73 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCcccEEE-------eccCCCCCCHHHHHHHHHHHHHcCCcce----EecCCCCHHHHHHHhcc---CCce
Q 026166 116 CEASLKRLDVDYIDLYY-------QHRVDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHAV---HPIT 181 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~-------lh~p~~~~~~~~~~~~l~~l~~~G~i~~----iGvS~~~~~~l~~~~~~---~~~~ 181 (242)
+-+.+.+.|+.++-+=+ ++........+++.++++.+++.|.--. +|+-+.+.+.+++.++. ..++
T Consensus 289 ~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~ 368 (472)
T TIGR03471 289 TLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPH 368 (472)
T ss_pred HHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 34556667776544321 1111222346678889999999987432 36677788877766554 2333
Q ss_pred EEecccCccCcChhhhHHHHHHHhCCcE
Q 026166 182 AVQMEYSLWTREIEDDIIPLCRELGIGI 209 (242)
Q Consensus 182 ~~q~~~~~~~~~~~~~l~~~~~~~gi~v 209 (242)
.++ ++++..-+...+.+.++++|.-.
T Consensus 369 ~~~--~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 369 TIQ--VSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred cee--eeecccCCCcHHHHHHHHCCCcC
Confidence 333 34444333467888888888644
No 119
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.15 E-value=1.7e+02 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++..++++...+.|+..|+...
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 778888999999999999999754
No 120
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.09 E-value=1.4e+02 Score=24.89 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCCHHHHHHHhccCCceEEe
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~i~~iGvS~~~~~~l~~~~~~~~~~~~q 184 (242)
.++.+... .+-+.|.++|+++|++-+ |.. -+.-|+.++.+.+.+ .++..++.....+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~-~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKL-AIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 35555555 456669999999999853 321 123466777777643 467777777778888887764 233333
Q ss_pred cccCccCc--------C------hhhhHHHHHHHhCCcEE
Q 026166 185 MEYSLWTR--------E------IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 185 ~~~~~~~~--------~------~~~~l~~~~~~~gi~v~ 210 (242)
+-++.-+. . .-.+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 32221111 0 11468899999998765
No 121
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=51.97 E-value=56 Score=27.01 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC------CCCHHHHHHHhccCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS------EASADTIRRAHAVHPI 180 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS------~~~~~~l~~~~~~~~~ 180 (242)
.+++.+..-+.+.-+.-. -.+ +.+..|-+..+.++.+++|.+|++.=+-+.+.+- ..+.+.+.+..+....
T Consensus 86 ~d~~~~adYl~~l~~aA~--P~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~ 162 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAA--PFK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAA 162 (248)
T ss_dssp T-HHHHHHHHHHHHHHHT--TS--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-S
T ss_pred CCHHHHHHHHHHHHHhcC--CCe-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCc
Confidence 355555544444333332 123 5677786666777788887777764333333332 2467788888877778
Q ss_pred eEEecccCccCc-ChhhhHHHHHHHhCCcEEe
Q 026166 181 TAVQMEYSLWTR-EIEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 181 ~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a 211 (242)
+.+|+.---+-. ...-+.+-+|+++|++...
T Consensus 163 dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 163 DMVQIKTPDLGGINNTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp SEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEecCCCccchhhHHHHHHHHHhcCCceee
Confidence 889984322211 1125688899999998753
No 122
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=51.96 E-value=1.6e+02 Score=25.78 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCCcc-eEecCCC---CHHHHHHHhccC---CceEEecccC
Q 026166 118 ASLKRLDVDYIDLYYQHR-VDT-SVSIEDTMGELKKLVEEGKIK-YIGLSEA---SADTIRRAHAVH---PITAVQMEYS 188 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~-p~~-~~~~~~~~~~l~~l~~~G~i~-~iGvS~~---~~~~l~~~~~~~---~~~~~q~~~~ 188 (242)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+= .|..|.. +++.++++++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 334578888888765433 221 123344444444443333332 2665533 788888888752 23222221
Q ss_pred ccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 189 LWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 189 ~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111278999999999999999863
No 123
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.53 E-value=1.7e+02 Score=25.79 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=60.5
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC--Cc--ceEecC--CCCHHHHHHHhcc---CCceEEecccCcc
Q 026166 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEG--KI--KYIGLS--EASADTIRRAHAV---HPITAVQMEYSLW 190 (242)
Q Consensus 131 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G--~i--~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~~ 190 (242)
+-+|.+++. .+++++++++.+....+ +| +++=+. |.+.++++++.+. .+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568887542 23567788877776654 33 344333 5556776666554 4567888999987
Q ss_pred CcC----h----hhhHHHHHHHhCCcEEecccC------ccccCCCC
Q 026166 191 TRE----I----EDDIIPLCRELGIGIVAYSPL------GRGFFAGK 223 (242)
Q Consensus 191 ~~~----~----~~~l~~~~~~~gi~v~a~spl------~~G~L~~~ 223 (242)
... + -..+.+..+++||.+...... ++|.|..+
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 337 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGK 337 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCccccc
Confidence 531 1 145777888999999988776 46777665
No 124
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=51.21 E-value=1.6e+02 Score=25.42 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCC----ChhHHHHHHHHhcCCC-CCEEEEeecCcccCCCcccCCCCCHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVD----HDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~----g~~e~~lg~~l~~~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (242)
++.++..++++.+.+.|++.|.- .|.. ..-..++..+ ++.+. .++.|+|-. .. +.
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~l---tGGEPll~~~l~~li~~i-~~~~gi~~v~itTNG-~l---------------l~ 102 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRL---TGGEPLLRKDLVELVARL-AALPGIEDIALTTNG-LL---------------LA 102 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECccccccCCHHHHHHHH-HhcCCCCeEEEEeCc-hh---------------HH
Confidence 58899999999999999988763 3311 1223333332 22222 266777743 11 11
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHcCCc--c--eEecCCCCHHHHHHHhcc---
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDT---------SVSIEDTMGELKKLVEEGKI--K--YIGLSEASADTIRRAHAV--- 177 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~~l~~l~~~G~i--~--~iGvS~~~~~~l~~~~~~--- 177 (242)
+ .-+.|.+.|++++- +-++.+++ ...++.+++.++.+++.|.- + .+-+.+.+.+++.++++.
T Consensus 103 ~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 103 R-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKE 180 (334)
T ss_pred H-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 22445666765544 33444332 12578899999999998852 2 333445666666666554
Q ss_pred CCceEEecccCcc
Q 026166 178 HPITAVQMEYSLW 190 (242)
Q Consensus 178 ~~~~~~q~~~~~~ 190 (242)
..+.+.-++|.++
T Consensus 181 ~gv~~~~ie~mp~ 193 (334)
T TIGR02666 181 RGVTLRFIELMPL 193 (334)
T ss_pred cCCeEEEEeccCC
Confidence 3344333444443
No 125
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=51.08 E-value=63 Score=25.05 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeec-CcccCCCcccCCCCCHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKF-GCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~-~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
+.+...-.+++|-++|+.+|=.|..||. .-.-+-+.+.. . =+++++|.- +...+ +.-.+...+++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~ 77 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRK 77 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHH
Confidence 5566677788888999999999999994 33323333331 1 345555544 33332 23345667778
Q ss_pred HHHHcCC
Q 026166 119 SLKRLDV 125 (242)
Q Consensus 119 sL~~L~~ 125 (242)
-|+..|.
T Consensus 78 ~L~erGa 84 (186)
T COG1751 78 ELKERGA 84 (186)
T ss_pred HHHHcCc
Confidence 8888885
No 126
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=50.68 E-value=2e+02 Score=26.28 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc-CCC-CCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~-~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
...+.+.+..+++.|. .||.+...|..+++.+.+ .+. +.+-. ++.+ .+....+++-
T Consensus 71 ~p~V~~Av~~~l~~G~-------~fg~Pte~Ei~~Aell~~~~p~~e~vrf-vnSG--------------TEAtmsAiRl 128 (432)
T COG0001 71 HPAVVEAVQEQLERGL-------SFGAPTELEVELAELLIERVPSIEKVRF-VNSG--------------TEATMSAIRL 128 (432)
T ss_pred CHHHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHHHhcCcccEEEE-ecch--------------hHHHHHHHHH
Confidence 4458899999999996 566666788999999876 344 33333 3322 3556667777
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-------CcceEecC-----------CCCHHHHHHHhccC--
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-------KIKYIGLS-----------EASADTIRRAHAVH-- 178 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-------~i~~iGvS-----------~~~~~~l~~~~~~~-- 178 (242)
...-.|.|.|=.+-=+....... + |++.| .-.+-|+- -.+.+.++++.+..
T Consensus 129 ARa~TgR~kIikF~G~YHG~~D~---~------lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~ 199 (432)
T COG0001 129 ARAYTGRDKIIKFEGCYHGHSDS---L------LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199 (432)
T ss_pred HHHhhCCCeEEEEcCCCCCCccH---H------HhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCC
Confidence 77777776654333222221110 0 11111 11222222 24567777777653
Q ss_pred CceEEec-----ccCccCcChh--hhHHHHHHHhCCcEEe
Q 026166 179 PITAVQM-----EYSLWTREIE--DDIIPLCRELGIGIVA 211 (242)
Q Consensus 179 ~~~~~q~-----~~~~~~~~~~--~~l~~~~~~~gi~v~a 211 (242)
.+.++-+ +..++....+ +.+.+.|+++|+.+|-
T Consensus 200 ~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~ 239 (432)
T COG0001 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIF 239 (432)
T ss_pred cEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4444433 4444444333 7899999999999873
No 127
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=50.43 E-value=1.8e+02 Score=25.60 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCC-----------------CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGV-----------------DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGV 101 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~ 101 (242)
++.+...++.+.|-+.|+-+|-|--.+.. .-....++....+ .-+.+.++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 47788899999999999999987655542 0112223333322 22356666654
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHHH-HHHHHHHHHHcCCcceEecCCCCHHHHHHHhc
Q 026166 102 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIED-TMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (242)
Q Consensus 102 ~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~-~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~ 176 (242)
-+-+.+.++++...++=. .|+.++|.... ..+.++ -+.+|-.|++.= -.-||+|.|+..-+..+.+
T Consensus 157 -----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 157 -----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred -----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 235678888877766654 39999997542 234443 355555555544 4569999999876655544
No 128
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.72 E-value=1.7e+02 Score=25.31 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeCccccCCCCh--hHHHHHHHH---hcC-CCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDHD--NEIMVGKAL---KQL-PRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~--~e~~lg~~l---~~~-~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
+.++..++++...+. |++-+- .-|.+.. +...+.+.+ ++. ....+-|.|+..... +..+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~Vi---lSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~-----------p~ri 185 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVI---LTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD-----------PARV 185 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEE---EeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC-----------hhhc
Confidence 567788888877655 887552 1121111 122233333 222 233456777764322 3344
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcce----E--ecCCCCHHHHHHHhc
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY----I--GLSEASADTIRRAHA 176 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~----i--GvS~~~~~~l~~~~~ 176 (242)
...+-+.|.+.|.. ..+.+|...+..-.++++++++.|++.|..-. + |+ |.+.+.+.++.+
T Consensus 186 t~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 186 TPALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred CHHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 44555566777742 35778876544445789999999999996221 1 43 577777766654
No 129
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=49.57 E-value=1.8e+02 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTS 62 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (242)
.+.++..++++...++|+..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478889999999999999999984
No 130
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=49.05 E-value=1.9e+02 Score=25.45 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=55.4
Q ss_pred CCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEE-Eecc-CCCC----CCHHHHHHHHHHHHHcC
Q 026166 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLY-YQHR-VDTS----VSIEDTMGELKKLVEEG 156 (242)
Q Consensus 83 ~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~-~lh~-p~~~----~~~~~~~~~l~~l~~~G 156 (242)
-..++.|..|+.......+ ..+.+... .+-+.|+..|+|+|++- -.|. +... .+.........++++.=
T Consensus 201 vG~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v 275 (353)
T cd02930 201 VGEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV 275 (353)
T ss_pred cCCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC
Confidence 3467788888875431111 13444433 34556788898888872 2232 2111 11111234456666665
Q ss_pred CcceEecCC-CCHHHHHHHhccCCceEEec
Q 026166 157 KIKYIGLSE-ASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 157 ~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~ 185 (242)
.+--++.-. ++++.++++++....+.+++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 666666654 57888999998766666665
No 131
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.74 E-value=85 Score=28.53 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=56.4
Q ss_pred HHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc--------CCceEEecccCc
Q 026166 119 SLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------HPITAVQMEYSL 189 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~--------~~~~~~q~~~~~ 189 (242)
.++.+|++|. ++..|-.. .. ..+....+=+.|-+..+|....+++++++.++. .||-+|.+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3466777664 33344321 22 234444555789999999999999988776543 24555553 233
Q ss_pred cCcChhhhHHHHHHHhCCcEEeccc
Q 026166 190 WTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 190 ~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
-+...+.++++.+.++||.++..+.
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222246799999999999876654
No 132
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=48.64 E-value=2.1e+02 Score=25.96 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=53.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceEecCC-C-CHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHH
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE-A-SADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLC 202 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~i~~iGvS~-~-~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~ 202 (242)
.++.++..|-+.. -|+.+.+|.+.- .+--+|=-. . ++..+..+++....+++|+..+-+-.- ...++.+.|
T Consensus 278 ~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA 353 (425)
T TIGR01060 278 YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELA 353 (425)
T ss_pred CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHH
Confidence 4677787775432 466666666654 554333332 2 589999998887788888877665432 227899999
Q ss_pred HHhCCcEEe
Q 026166 203 RELGIGIVA 211 (242)
Q Consensus 203 ~~~gi~v~a 211 (242)
+.+|+.++.
T Consensus 354 ~~~Gi~~vv 362 (425)
T TIGR01060 354 KKAGYTAVI 362 (425)
T ss_pred HHcCCcEEE
Confidence 999998554
No 133
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=48.32 E-value=83 Score=25.33 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=53.0
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccC-ccCcChhhhHHHHHHHh
Q 026166 127 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCREL 205 (242)
Q Consensus 127 ~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~l~~~~~~~ 205 (242)
...+..+.++. .-+...+|.+.|- ..+-+.-.+.+.|.++++.....++-+... .-.......+++.|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 35677776664 2223455566666 456666677888988888655444444332 22222347899999999
Q ss_pred CCcEEecccCcccc
Q 026166 206 GIGIVAYSPLGRGF 219 (242)
Q Consensus 206 gi~v~a~spl~~G~ 219 (242)
||..+.+|-++...
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99999999987665
No 134
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=48.31 E-value=1.7e+02 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++..++++.-.+.|+..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 778889999999999999999863
No 135
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=48.14 E-value=1.8e+02 Score=25.31 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
...+++|+.+-++|| .+|.|+. +++.+-+++. . -+.-+|+|......-. +..+.--.++++...+
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~------s~kt~~Dvl~-~-s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL------SDKTFWDVLD-L-SKAPVVASHSNARALV------DHPRNLSDEQLKAIAE 213 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc------CCccHHHHHh-c-cCCceEEecCCchhcc------CCCCCCCHHHHHHHHh
Confidence 456899999999999 8998873 5667777776 2 4455666666543311 1223333455666666
Q ss_pred HcCCCcccEEEeccCC-----CCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 122 RLDVDYIDLYYQHRVD-----TSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p~-----~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
+=|+ |.+.++-..- ...++++..+.++.+++.+=+++||+..
T Consensus 214 ~gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 214 TGGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred cCCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 6664 5554443221 2346899999999999999999999985
No 136
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.54 E-value=56 Score=27.52 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEEe
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~q 184 (242)
.++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+....+.+.++.+.+. .++.+.
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 355555554 55569999998888763 5332 334555555554444 34455667778888888875 223333
Q ss_pred cccCcc--------CcCh------hhhHHHHHHHhCCcEEec
Q 026166 185 MEYSLW--------TREI------EDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 185 ~~~~~~--------~~~~------~~~l~~~~~~~gi~v~a~ 212 (242)
+-++.- .... -.+++++++++|+.+...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 322111 1111 155778999999876544
No 137
>TIGR00035 asp_race aspartate racemase.
Probab=47.32 E-value=1.6e+02 Score=24.07 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------------CHHHHHHHHHHHHHcCCcceEecCCCCHHH-HHHH
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV------------SIEDTMGELKKLVEEGKIKYIGLSEASADT-IRRA 174 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------------~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~-l~~~ 174 (242)
+.+++++=++..-.+.+.++++.+.+++|+... ....+.+.++.|.+. .+.+|-+..+++.. ++++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHHHHH
Confidence 456777777777778889999999999985311 122345566666554 47999999888765 3344
Q ss_pred hc
Q 026166 175 HA 176 (242)
Q Consensus 175 ~~ 176 (242)
-+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 33
No 138
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=47.13 E-value=1.8e+02 Score=24.65 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHc------CCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc
Q 026166 107 GSPEYVRKCCEASLKRL------DVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L------~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
.+.+...+..+-+.+-+ ++++|-|=.+..+.... +..|++++-+.|+++|-+-. =-.+-++-..+++.+.
T Consensus 81 ~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed~ 157 (267)
T CHL00162 81 QTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLEDI 157 (267)
T ss_pred CCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHc
Confidence 55666666666666666 67888877776665443 45789999999999997542 2233344444444443
No 139
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.95 E-value=1.7e+02 Score=24.41 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CC----HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VS----IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~~-~~----~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~ 180 (242)
.+.+.+.+..++.+ .-|.|.||+-. --+|+.. .+ .+.....++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46677766665554 56889999853 2334321 11 23345566666655333 388999999999999987633
Q ss_pred eEEecccCccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 181 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
-+|-+ +....+ +++++.++++|..++....-
T Consensus 99 iINdi--s~~~~~--~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 IINDV--SGGRGD--PEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred EEEeC--CCCCCC--hHHHHHHHHcCCCEEEECcC
Confidence 23222 222211 57999999999999888653
No 140
>PRK05588 histidinol-phosphatase; Provisional
Probab=46.88 E-value=1.7e+02 Score=24.27 Aligned_cols=106 Identities=17% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCC---C-----hhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVD---H-----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g-----~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
.....+.+++|.+.|+..+ .+.|.... . .-+..+.. +++.+..+|.+..-++.. ++ .
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~-i~~~~~~~I~~GiE~~~~------------~~-~ 79 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNK-YSKYRNNKLLLGIELGME------------KD-L 79 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHH-HHHHhcCCcceEEEeccc------------CC-C
Confidence 3457899999999999998 77663110 0 11122211 121222344444443221 22 2
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCC----------CHHH----HHHHHHHHHH-cCCcceEe
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSV----------SIED----TMGELKKLVE-EGKIKYIG 162 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~----------~~~~----~~~~l~~l~~-~G~i~~iG 162 (242)
...+++.|+....|++ +.-+|+.+... +.++ -++.+.++.+ .+++.-+|
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 3455677777777776 78889854211 2233 3466777776 46554443
No 141
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.53 E-value=1.6e+02 Score=26.34 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=58.2
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecC--CCCHHHHHHH---hccC---CceEEecc
Q 026166 130 LYYQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLS--EASADTIRRA---HAVH---PITAVQME 186 (242)
Q Consensus 130 l~~lh~p~~~-----------~~~~~~~~~l~~l~-~~G~---i~~iGvS--~~~~~~l~~~---~~~~---~~~~~q~~ 186 (242)
.+-||.+++. .+++++++++.+.. +.|+ |.++=+. |-+.++++++ ++.. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4778988642 34688899877776 4454 4555444 4455544444 4434 56788999
Q ss_pred cCccCcC-----h---hhhHHHHHHHhCCcEEecccCc
Q 026166 187 YSLWTRE-----I---EDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 187 ~~~~~~~-----~---~~~l~~~~~~~gi~v~a~spl~ 216 (242)
||++... . -..+.+..+++||.+......+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G 358 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRG 358 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCC
Confidence 9996531 1 1568888899999999887764
No 142
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.48 E-value=2.1e+02 Score=25.37 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=55.3
Q ss_pred EeccCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecC--CCCHHHHHHHhcc---CCceEEecccCccC
Q 026166 132 YQHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLS--EASADTIRRAHAV---HPITAVQMEYSLWT 191 (242)
Q Consensus 132 ~lh~p~~~-----------~~~~~~~~~l~~l~-~~G~---i~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~~~ 191 (242)
-||.+++. .+++++++++..+. +.|+ |+++=+. |.+.++++++.+. .+..++-++||++.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988652 23567888887554 4444 4555444 4556666666543 45678889999876
Q ss_pred cC----hh----hhHHHHHHHhCCcEEecccCc
Q 026166 192 RE----IE----DDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 192 ~~----~~----~~l~~~~~~~gi~v~a~spl~ 216 (242)
.. +. ..+.+..+++|+.+......+
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G 337 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKG 337 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 31 11 446667788899998887764
No 143
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.32 E-value=2.3e+02 Score=25.67 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++..+.+..+++.|++.|=.-- |.+.......=+++++.-.+++.|..-.... ++++...+ .
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv--g~~~~~d~~~v~avRe~vG~~~~L~vDaN~~----------w~~~~A~~----~ 259 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV--GADLEDDIRRCRLAREVIGPDNKLMIDANQR----------WDVPEAIE----W 259 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC--CCCHHHHHHHHHHHHHhcCCCCeEEEECCCC----------CCHHHHHH----H
Confidence 456666777888889999875321 1100111112223333223444454443221 34444333 2
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC---Cc-ceEecCCCCHHHHHHHhccCCceEEecccCccCc-Ch
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG---KI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EI 194 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G---~i-~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~ 194 (242)
+++| +..++.++..|-+.. -++.+.+|++.. .+ -+.|=|.++...+..+++....+++|+...-.-. ..
T Consensus 260 ~~~L--~~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~ 333 (415)
T cd03324 260 VKQL--AEFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNE 333 (415)
T ss_pred HHHh--hccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 2333 234666777775433 456666676654 23 3556667888999999987788888887655432 12
Q ss_pred hhhHHHHHHHhCCcEEecc
Q 026166 195 EDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~s 213 (242)
...+...|+.+|+.+...+
T Consensus 334 ~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 334 NLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHcCCeEEEcC
Confidence 2789999999999987763
No 144
>PRK09061 D-glutamate deacylase; Validated
Probab=45.81 E-value=2.3e+02 Score=26.35 Aligned_cols=114 Identities=9% Similarity=-0.008 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
++..++++.|++.|+..|-+...|-. +.+...+-..++...+.+..|.+....... .++.....++++.++
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~ 239 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIA 239 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHH
Confidence 34678888999999999987666643 335555655555444556677776633210 011112223333333
Q ss_pred HcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecC
Q 026166 122 RLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLS 164 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~i~~iGvS 164 (242)
.-...-.-+.+.|-... ..+..+.++.+++++++|.--..-++
T Consensus 240 lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 240 AAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 22211234667776532 23457788999999999854444443
No 145
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=45.76 E-value=2.1e+02 Score=25.33 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTS 62 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (242)
.+.++..++++.-.+.||..|+.+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 378888999999999999999986
No 146
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.43 E-value=70 Score=25.89 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccC-CceEEec
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQM 185 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~-~~~~~q~ 185 (242)
+++...+ +-+.|-.-|+.-+.+=+ -. .+..+.+++++++..=-.||..+ .+.++++.+++.. .|.
T Consensus 14 ~~~~a~~-ia~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi---- 80 (201)
T PRK06015 14 DVEHAVP-LARALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI---- 80 (201)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 3555554 44455566765555422 11 12556666666654334588876 6788898888763 332
Q ss_pred ccCccCcChhhhHHHHHHHhCCcEE
Q 026166 186 EYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
.++.. .++++++|+++||.++
T Consensus 81 -vSP~~---~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 81 -VSPGT---TQELLAAANDSDVPLL 101 (201)
T ss_pred -ECCCC---CHHHHHHHHHcCCCEe
Confidence 12322 3789999999999887
No 147
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=45.40 E-value=1.7e+02 Score=23.99 Aligned_cols=97 Identities=15% Similarity=0.319 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc------ceEecCCCCHHHHHHHhc---cCCc
Q 026166 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI------KYIGLSEASADTIRRAHA---VHPI 180 (242)
Q Consensus 110 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i------~~iGvS~~~~~~l~~~~~---~~~~ 180 (242)
......++...+.-+...|+-+++...+.....+|.+...+.|.+.|-- -+-|+++.+ .+.++.+ ...|
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLD--SvvRA~kVF~~~~f 153 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLD--SVVRARKVFGTNDF 153 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHH--HHHHHHHHcCcCcE
Confidence 3456667777777788889999998888888889999999999999973 355666543 3334443 3455
Q ss_pred eEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 181 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
.++--+||- +..+=.|+.+||.-+++..
T Consensus 154 tIItQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 154 TIITQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred EEEeccccc------HHHHHHHHHhCCceEEecC
Confidence 554444554 5677789999998887754
No 148
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.29 E-value=2.4e+02 Score=25.60 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=52.9
Q ss_pred CccccCCCChhHHHHHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCC-CcccEEEecc
Q 026166 61 TSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV-DYIDLYYQHR 135 (242)
Q Consensus 61 tA~~Yg~~g~~e~~lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lh~ 135 (242)
..-.|| .++-|.+++++ .+++=++|.|-.-... --+.+..-+++.-++... ..+.++.++.
T Consensus 63 ~d~V~G----g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~t 128 (435)
T cd01974 63 DAAVFG----GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANT 128 (435)
T ss_pred CceEEC----cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecC
Confidence 345777 36666666665 3444455555542221 112233333332223211 1378899988
Q ss_pred CCCCCCH----HHHHHHHHH-HHH-------cCCcceEecCC--CC-HHHHHHHhccCCceEE
Q 026166 136 VDTSVSI----EDTMGELKK-LVE-------EGKIKYIGLSE--AS-ADTIRRAHAVHPITAV 183 (242)
Q Consensus 136 p~~~~~~----~~~~~~l~~-l~~-------~G~i~~iGvS~--~~-~~~l~~~~~~~~~~~~ 183 (242)
|...... +.++++|-+ +.. .+.|.-||-.+ .+ .+.+.++++...+.++
T Consensus 129 pgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 129 PSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 8655432 334444432 222 23465665222 22 5677777776544444
No 149
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=45.11 E-value=26 Score=29.19 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCCcccccceecccccCCcCCCC--CCHHHHHHHHH----HHHHcCCCEEeCcc---ccCCCChhHHHHHHHHhc-----
Q 026166 16 SQGLEVSRLGFGCGGLSGIYNKP--LSHEVGCSIIK----ETFNRGITLFDTSD---VYGVDHDNEIMVGKALKQ----- 81 (242)
Q Consensus 16 ~~g~~vs~lglG~~~~~~~~~~~--~~~~~~~~~l~----~A~~~Gi~~~DtA~---~Yg~~g~~e~~lg~~l~~----- 81 (242)
.+|+.+|.+||.+.+-- .+|+. ...+++.+++. .|.++|||.|--|. .|. ..++....+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE--~~d~eT~~rFi~g~~~a~ 141 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYE--EADEETRQRFIEGLKWAV 141 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeec--cCCHHHHHHHHHHHHHHH
Confidence 57899999999886532 13433 23355555554 45578999998775 344 3345555554443
Q ss_pred --CCCCCEEEEeec
Q 026166 82 --LPRDKIQLATKF 93 (242)
Q Consensus 82 --~~R~~l~I~tK~ 93 (242)
..+.++.++.-+
T Consensus 142 ~lA~~aqV~lAvEi 155 (287)
T COG3623 142 ELAARAQVMLAVEI 155 (287)
T ss_pred HHHHhhccEEEeee
Confidence 355666666554
No 150
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=44.95 E-value=1.8e+02 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYG 66 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 66 (242)
+.++..++++.|.+.|+|-+=..++|-
T Consensus 18 s~eesl~ml~~A~~qGvt~iVaTsHh~ 44 (254)
T COG4464 18 SLEESLAMLREAVRQGVTKIVATSHHL 44 (254)
T ss_pred cHHHHHHHHHHHHHcCceEEeeccccc
Confidence 889999999999999999665555543
No 151
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=44.88 E-value=1.9e+02 Score=24.30 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CCHHH----HHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSIED----TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 180 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~~-~~~~~----~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~ 180 (242)
.+.+.+.+...+.+ .-|-+.||+-. --+|+.. .+.++ +...++.+++.-.+- +.+-++.++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 55666665555554 55889999853 2245432 22333 333455666553443 78889999999999987533
Q ss_pred eEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 181 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 181 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
-+|- .+....+ +.+++.++++|..++.+..
T Consensus 99 iINd--isg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 IIND--VSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEEe--CCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 2332 2333222 5799999999999998543
No 152
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=44.77 E-value=1.7e+02 Score=23.91 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCEEeC-ccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEec
Q 026166 56 ITLFDT-SDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (242)
Q Consensus 56 i~~~Dt-A~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh 134 (242)
++.+.. +..|.. -..+.+.++.++ -++++..+.|+......... .....+.+.+.+-+.++-|+ +++..+++.
T Consensus 19 F~~VEvn~TFY~~--P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~~--l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q 92 (230)
T PF01904_consen 19 FNTVEVNSTFYRI--PSPETVARWREQ-TPEGFRFSVKAPQLITHERR--LRDCAEELWRRFLEALEPLG-EKLGPILFQ 92 (230)
T ss_dssp -SEEEE-HHCCSS--S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCCH--CGSSHHHHHHHHHHHCHHHH-T-EEEEEEE
T ss_pred CCeEEECcccCCC--CCHHHHHHHHhh-CCCCeEEEEeccHHheeccc--ccccHHHHHHHHHHHHHHHh-hcceEEEEE
Confidence 444443 567774 477888888874 56889999999765432111 11235666466666999998 899999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 135 RVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 135 ~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
-|..-....+.++.|..+.+.-. . .-...+.+.---|. .++++++++++|+..+.-
T Consensus 93 ~Ppsf~~~~~~~~~l~~~l~~~~------------------~-~~~~avE~R~~sW~---~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 93 FPPSFRFTPENLERLDAFLDRLP------------------R-GFRYAVEFRHPSWF---TEEVFELLREHGVALVIA 148 (230)
T ss_dssp --TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-EEEEE
T ss_pred cCCCcCCCHHHHHHHHHHHhhcc------------------c-ccceEEecCCcchh---hHHHHHHHHHcCCEEEEe
Confidence 98753344556665555444322 0 11123333222233 268899999999987643
No 153
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=44.65 E-value=2.3e+02 Score=25.37 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=55.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhC
Q 026166 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELG 206 (242)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~g 206 (242)
|-+++..|. ...++..++.+.+.+.++.+-+...+.+.++++++. .++.++..+-|+.-+.. -.++.++|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 555564443 234555666655555566666665678888877643 34555555666654332 278999999999
Q ss_pred CcEEecccCcccc
Q 026166 207 IGIVAYSPLGRGF 219 (242)
Q Consensus 207 i~v~a~spl~~G~ 219 (242)
+.++.=.+++.+.
T Consensus 176 i~vIvD~a~a~~~ 188 (405)
T PRK08776 176 ALTVVDNTFLSPA 188 (405)
T ss_pred CEEEEECCCcccc
Confidence 9999777666543
No 154
>PTZ00081 enolase; Provisional
Probab=44.58 E-value=2.5e+02 Score=25.69 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceEec--CCCCHHHHHHHhccCCceE
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGL--SEASADTIRRAHAVHPITA 182 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G--~i~~iGv--S~~~~~~l~~~~~~~~~~~ 182 (242)
.+++.+.+-+.+.++.+ +++++..|-.. +-|+.+.+|.++- .+.-+|= +..++..+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 45666655555555554 46777777543 3456666666553 5554443 2456899999998888888
Q ss_pred EecccCccCcC-hhhhHHHHHHHhCCcEEec
Q 026166 183 VQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 183 ~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~ 212 (242)
+|+..|-+-.- ...++++.|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 88887765432 2377999999999998763
No 155
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=43.35 E-value=2.3e+02 Score=24.99 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEEe
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~q 184 (242)
.++.+...+ +-+.|.++|+++|++- +|.. -+.-|+.++.+.+.+. .+..+++....+.++.+.+.. .+.+.
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 455565554 5566999999988885 3432 1334677777776643 667777777788888887642 22333
Q ss_pred cccCccC--------cCh------hhhHHHHHHHhCCcEE
Q 026166 185 MEYSLWT--------REI------EDDIIPLCRELGIGIV 210 (242)
Q Consensus 185 ~~~~~~~--------~~~------~~~l~~~~~~~gi~v~ 210 (242)
+-...-+ ... -.+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3222211 111 1468999999998754
No 156
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.35 E-value=1.3e+02 Score=24.22 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCC
Q 026166 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (242)
Q Consensus 110 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~ 167 (242)
..+.+.+++.++.+|.+ +.++ .+...+..+..+.++.+.++| +.+|=++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~---~~~~--~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE---VEIV--FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCE---EEEE--EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCE---EEEe--CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 45778888999999863 2332 333345577888888888877 7766665433
No 157
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=43.07 E-value=85 Score=25.47 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccC-CceEEec
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQM 185 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~-~~~~~q~ 185 (242)
+++...+ +-+.|-.-|++.+.+=+ +. ....+.+++++++..=-.||..+ .+.++.+.+++.. .|.
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 3444443 45566677766555422 11 23566677776654435688877 6788898888763 332
Q ss_pred ccCccCcChhhhHHHHHHHhCCcEEe
Q 026166 186 EYSLWTREIEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~gi~v~a 211 (242)
.++.. ..+++++|+++||.++.
T Consensus 85 -vsP~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 -VSPGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred -ECCCC---CHHHHHHHHHcCCcEEC
Confidence 12222 37899999999998873
No 158
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=41.72 E-value=2.2e+02 Score=24.15 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCC----hhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDH----DNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g----~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
++.++..++++.+.+.|+..|.- .|..+ .-..++..+ ++..-.++.|+|-.. .+.
T Consensus 40 ls~eei~~~i~~~~~~gi~~I~~---tGGEPll~~~l~~iv~~l-~~~g~~~v~i~TNG~----------------ll~- 98 (302)
T TIGR02668 40 LSPEEIERIVRVASEFGVRKVKI---TGGEPLLRKDLIEIIRRI-KDYGIKDVSMTTNGI----------------LLE- 98 (302)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE---ECcccccccCHHHHHHHH-HhCCCceEEEEcCch----------------HHH-
Confidence 58899999999999999988763 34211 112223322 211112556665421 111
Q ss_pred HHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCCCCHHHHHHHhcc---CC
Q 026166 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHAV---HP 179 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~----i~~iGvS~~~~~~l~~~~~~---~~ 179 (242)
..-..|.+.|++.|- +-++.+++ ....+.+++.++.+++.|. +..+.+.+.+.+++.++++. ..
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 223345666766554 33444432 1347789999999999984 23445554667777766654 33
Q ss_pred ceEEecccCccCcC---------hhhhHHHHHHHhC
Q 026166 180 ITAVQMEYSLWTRE---------IEDDIIPLCRELG 206 (242)
Q Consensus 180 ~~~~q~~~~~~~~~---------~~~~l~~~~~~~g 206 (242)
+.+.-+++.+.... ...++.+..+++.
T Consensus 178 ~~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~ 213 (302)
T TIGR02668 178 AILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMA 213 (302)
T ss_pred CEEEEEEEeECCCCccchhhceecHHHHHHHHHHhc
Confidence 44433444443211 1255666666653
No 159
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=41.67 E-value=83 Score=25.13 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEecccCccCcChhhh
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQMEYSLWTREIEDD 197 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 197 (242)
.+..+|.||+=+.+. |.....+ ..+...++.+.-.-+.+||.. -+++.+.++++...++++|+.-+- ..+
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-----~~e 84 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE-----SPE 84 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG------HH
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC-----CHH
Confidence 457789999887643 4322222 234455555444444889875 567778888888899999974333 234
Q ss_pred HHHHHHHhCCcEE
Q 026166 198 IIPLCRELGIGIV 210 (242)
Q Consensus 198 l~~~~~~~gi~v~ 210 (242)
..+..+ .++.++
T Consensus 85 ~~~~l~-~~~~vi 96 (197)
T PF00697_consen 85 YIKLLR-AGLPVI 96 (197)
T ss_dssp HHHHHH-TTSEEE
T ss_pred HHHHhh-cCceEE
Confidence 444444 345543
No 160
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.64 E-value=3.4e+02 Score=26.40 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcc--ccCCCChhHHHHHHHHhcCCCCCEEEEe--ecCcccCCCccc-------CCCC
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSD--VYGVDHDNEIMVGKALKQLPRDKIQLAT--KFGCFMLDGVSI-------GVKG 107 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~~g~~e~~lg~~l~~~~R~~l~I~t--K~~~~~~~~~~~-------~~~~ 107 (242)
.|.++..+.+....+.|+.-|=.+. .|-| ...|..+++.+++.- .++-|++ ++++..+...+. ....
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~N-P~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRN-PEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCC-cHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 5889999999999999999766543 5555 889999999999744 6677777 776533221110 0000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHH
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIED 144 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~ 144 (242)
-.....++++..|+.-|.+ .+++++.......+.++
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~~~ 249 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSAEE 249 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCccccHHH
Confidence 1244556677778887765 67888887755444433
No 161
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=40.76 E-value=58 Score=24.68 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=18.2
Q ss_pred CHHHHHHHhccCCceEEecccC-ccCcChhhhHHHHHHHhCCcE-EecccC
Q 026166 167 SADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRELGIGI-VAYSPL 215 (242)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~l~~~~~~~gi~v-~a~spl 215 (242)
+.+.+..+.....++++.+++. -.........+..|.++|+.+ +.|+|+
T Consensus 34 ~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~ 84 (150)
T PF01876_consen 34 SEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPL 84 (150)
T ss_dssp -HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHH
T ss_pred CHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHh
Confidence 3344444444444444444442 111122245555555555555 444443
No 162
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=40.66 E-value=1.3e+02 Score=27.55 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=55.5
Q ss_pred HHHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc------C-C-ceEEecccCcc
Q 026166 120 LKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------H-P-ITAVQMEYSLW 190 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~------~-~-~~~~q~~~~~~ 190 (242)
.+.+|++|. ++..|-. ... ..+....+=+.|-...+|....+++++++.+.. . + |-+|.+ .+.-
T Consensus 12 ~~~lgiryP---iiqgpMa~GiS---s~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~ 84 (444)
T TIGR02814 12 REDYGVRYA---YVAGAMANGIA---SAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPS 84 (444)
T ss_pred HHHhCCCCc---EECccccCCCC---CHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCC
Confidence 456777664 2333332 111 234444555789999999999999998877643 1 4 555553 2222
Q ss_pred CcChhhhHHHHHHHhCCcEEecccC
Q 026166 191 TREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 191 ~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
+...+.++++.|-+++|.++..+.+
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~ 109 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAF 109 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccc
Confidence 2222467999999999998876543
No 163
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=40.00 E-value=44 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGV 67 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (242)
+.+.+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 6778899999999999999999999963
No 164
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=39.98 E-value=85 Score=29.20 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCEEe--CccccC---C----CChhHHHHHHHHhc---CCCCCEEEEeecCcccCCCc---------ccC
Q 026166 46 SIIKETFNRGITLFD--TSDVYG---V----DHDNEIMVGKALKQ---LPRDKIQLATKFGCFMLDGV---------SIG 104 (242)
Q Consensus 46 ~~l~~A~~~Gi~~~D--tA~~Yg---~----~g~~e~~lg~~l~~---~~R~~l~I~tK~~~~~~~~~---------~~~ 104 (242)
+-+.+.-+.|++.+- ||-.|- . .|+-|+++.-+-+. ..+-++|+++-++.-...++ ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 445666778887665 454442 1 14445554433222 46778999999875432210 112
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc---CCce
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPIT 181 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~---~~~~ 181 (242)
...+++.|+ +|+...|+|.+- .+++++++..++.+++|+..+||+-..-.+.++++++. ..+.
T Consensus 186 vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 186 VEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp EES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred EEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 234455554 566778988642 36899999999999999999999999999999999876 3344
Q ss_pred EEeccc
Q 026166 182 AVQMEY 187 (242)
Q Consensus 182 ~~q~~~ 187 (242)
+-|...
T Consensus 252 tDQTS~ 257 (546)
T PF01175_consen 252 TDQTSA 257 (546)
T ss_dssp ---SST
T ss_pred cCCCcc
Confidence 556543
No 165
>PRK09389 (R)-citramalate synthase; Provisional
Probab=39.64 E-value=2.9e+02 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
++.++..++.+...+.|+..|+...
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3788888999999999999999864
No 166
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=39.47 E-value=2.2e+02 Score=25.82 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCC-EEeCccccCCCChhHHHHHHH-HhcCCCCCEEEEeecCccc--CCCcccCCCCCHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGIT-LFDTSDVYGVDHDNEIMVGKA-LKQLPRDKIQLATKFGCFM--LDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~~g~~e~~lg~~-l~~~~R~~l~I~tK~~~~~--~~~~~~~~~~~~~~i~~~ 115 (242)
+.+.-.+-++.|++.|-. ..|-+. .| .-..+.+. |+. ..+-|.| +.... ........+.+++.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg----dl~~iR~~il~~---s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG----DLDEIRKAILDA---VPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC----CHHHHHHHHHHc---CCCCccC-ccHHHHHHHhcCChhhCCHHHHHHH
Confidence 666667779999999975 556554 22 33444444 332 1122211 10000 000011234667777777
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcChh
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE 195 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~ 195 (242)
+++-.+ |=+|++-+|.-- ..+.++.+++.|++ .|+-+-.-..+..-+..+. .=|++....
T Consensus 146 ie~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~~~------~ENPlye~f- 205 (423)
T TIGR00190 146 IEKQAK----DGVDFMTIHAGV-------LLEYVERLKRSGRI--TGIVSRGGAILAAWMLHHH------KENPLYKNF- 205 (423)
T ss_pred HHHHHH----hCCCEEEEccch-------hHHHHHHHHhCCCc--cCeecCcHHHHHHHHHHcC------CcCchHHHH-
Confidence 766654 447889999752 56788888888865 4554444343333322111 123333332
Q ss_pred hhHHHHHHHhCCcEEecccCccccCCC
Q 026166 196 DDIIPLCRELGIGIVAYSPLGRGFFAG 222 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~spl~~G~L~~ 222 (242)
+.+++.|++++|.+ .|+-|+-.|
T Consensus 206 D~lLeI~~~yDVtl----SLGDglRPG 228 (423)
T TIGR00190 206 DYILEIAKEYDVTL----SLGDGLRPG 228 (423)
T ss_pred HHHHHHHHHhCeee----eccCCcCCC
Confidence 68999999999998 455555444
No 167
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=39.31 E-value=1.2e+02 Score=27.26 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCC--cc-eEecCCCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHhCCcEEec
Q 026166 145 TMGELKKLVEEGK--IK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 145 ~~~~l~~l~~~G~--i~-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~ 212 (242)
-++.+.+|++.-. |. +-|=+.++...+..+++...++++|....-.-.- .-..+.+.|+.+|+.++..
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4667777877654 22 3477888999999999888888999876654321 1268999999999998754
No 168
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=39.04 E-value=3e+02 Score=25.07 Aligned_cols=70 Identities=17% Similarity=0.392 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCC-cceEecCC---CCHHHHHHHhcc-CCceEE-ecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 145 TMGELKKLVEEGK-IKYIGLSE---ASADTIRRAHAV-HPITAV-QMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 145 ~~~~l~~l~~~G~-i~~iGvS~---~~~~~l~~~~~~-~~~~~~-q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
+....+.++++|. +.++.+.+ .+.+.++++++. ++...+ .+...+.-..+-+++...|++.||.+++=..
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaA 219 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAA 219 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehh
Confidence 4455555666775 46777775 334455555543 232222 2222222222347888899999887765443
No 169
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=39.01 E-value=62 Score=26.07 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccC-CceEEecc
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVH-PITAVQME 186 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~-~~~~~q~~ 186 (242)
++...+ +-+.|-.-|+..+.+ -+-.+ . ..+.++.++++--=-.||..+ .+.++++.+++.. .|.+
T Consensus 19 ~~~a~~-~~~al~~gGi~~iEi---T~~t~--~---a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv---- 85 (196)
T PF01081_consen 19 PEDAVP-IAEALIEGGIRAIEI---TLRTP--N---ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV---- 85 (196)
T ss_dssp GGGHHH-HHHHHHHTT--EEEE---ETTST--T---HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE----
T ss_pred HHHHHH-HHHHHHHCCCCEEEE---ecCCc--c---HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE----
Confidence 344433 445555566554443 22221 2 344455444433224588877 6788999888763 3422
Q ss_pred cCccCcChhhhHHHHHHHhCCcEE
Q 026166 187 YSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++ ...++++++|+++|+.++
T Consensus 86 -SP---~~~~~v~~~~~~~~i~~i 105 (196)
T PF01081_consen 86 -SP---GFDPEVIEYAREYGIPYI 105 (196)
T ss_dssp -ES---S--HHHHHHHHHHTSEEE
T ss_pred -CC---CCCHHHHHHHHHcCCccc
Confidence 22 123799999999999987
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.00 E-value=2.5e+02 Score=24.07 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=51.0
Q ss_pred CCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC----------CHHHHHHHHHHHH
Q 026166 84 RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----------SIEDTMGELKKLV 153 (242)
Q Consensus 84 R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----------~~~~~~~~l~~l~ 153 (242)
.+++.|..|+....... ...+.+... .+-+.|+..|+|+|++ +...... .....++.+..++
T Consensus 206 g~d~~i~vris~~~~~~----~g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVP----GGLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCC----CCCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 35678888886543110 013344433 3444567778666553 3322111 1122345556666
Q ss_pred HcCCcceEecCCC-CHHHHHHHhccCCceEEec
Q 026166 154 EEGKIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 154 ~~G~i~~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (242)
+.=.+--++..+. +++.++++++....+.+++
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 6545666666664 4888888887655666654
No 171
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.58 E-value=2.5e+02 Score=25.49 Aligned_cols=106 Identities=13% Similarity=0.209 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcC
Q 026166 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD 124 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~ 124 (242)
...+.++++.|- +-..-.||++|..-+.+.+.|++.-...+.-.+-+ . .+.+.+++.++++.+.++
T Consensus 36 ~~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---~---------~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 36 GKPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---T---------SGVKDLREIIEEARKNRL 101 (436)
T ss_pred CchHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---c---------ccHHHHHHHHHHHHHHHh
Confidence 467889999864 33444899999999999999986222222221211 1 246789999999988877
Q ss_pred CCcccEEEe---ccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHH
Q 026166 125 VDYIDLYYQ---HRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASAD 169 (242)
Q Consensus 125 ~d~iDl~~l---h~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~ 169 (242)
..+=-++++ |+.+. ..-++|--.++.|.|-.||.++-+|.
T Consensus 102 ~gr~tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 102 LGRRTILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred cCCceEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCCC
Confidence 544455555 44432 24567777888999999999976553
No 172
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.16 E-value=2.8e+02 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCc
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTS 62 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (242)
.+.++..+++...-+.|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478888999999999999999984
No 173
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=38.14 E-value=2.8e+02 Score=24.44 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=56.5
Q ss_pred CcccEE-EeccCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--CCCHHHHHHHhcc---C-----C
Q 026166 126 DYIDLY-YQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRAHAV---H-----P 179 (242)
Q Consensus 126 d~iDl~-~lh~p~~~-----------~~~~~~~~~l~~l~~-~G~---i~~iGvS--~~~~~~l~~~~~~---~-----~ 179 (242)
.++||. -+|.+++. .+++++++++.+..+ .|. |+++=+. |.+.+.++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 357774 47777432 345667776666655 343 3344332 5566666666554 2 3
Q ss_pred ceEEecccCccCcC------h----hhhHHHHHHHhCCcEEecccCc
Q 026166 180 ITAVQMEYSLWTRE------I----EDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 180 ~~~~q~~~~~~~~~------~----~~~l~~~~~~~gi~v~a~spl~ 216 (242)
..++-++||.+... + -..+.+..+++|+.+......+
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 46788899987432 1 1567888899999998887764
No 174
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.12 E-value=2.7e+02 Score=24.15 Aligned_cols=109 Identities=15% Similarity=0.060 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceEecCC---------CCHHHHHHHhcc
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSE---------ASADTIRRAHAV 177 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-~~~~~~~~l~~l~~~G~i~~iGvS~---------~~~~~l~~~~~~ 177 (242)
+.+.+.+.++...+..++ .-+.+-.=|+.. +.....+.++.+++.+.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I---~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI---WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc---cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555443333333 223343333322 2345677777888888776444432 344445545443
Q ss_pred CCceEEecccCccC--cChhhhHHHHHHHhCCcEEecccCcccc
Q 026166 178 HPITAVQMEYSLWT--REIEDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 178 ~~~~~~q~~~~~~~--~~~~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
.....+-+..+-.. .......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 32223333332111 1112567788888899998888887775
No 175
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=38.04 E-value=2.8e+02 Score=24.42 Aligned_cols=124 Identities=10% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRG---ITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
.+.++..+++....+.- +-.+|..+..+. -...+-+.+. ...-++|.+|...... ....+.+.+-
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~ 115 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS---LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEW 115 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC---ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHH
Confidence 35566666666554321 235676554442 2223333332 4566789999865321 1345666666
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHH-HHHHh
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADT-IRRAH 175 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~-l~~~~ 175 (242)
+.+.++..+....+++++..-. ...+++.++.|.++++.+.|-.+|.+|..-+- +..++
T Consensus 116 l~~~~k~~g~~~~~i~~vSAk~-g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVSAKK-GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred HHHHHHHcCCCcCcEEEecCCC-CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence 6666777876545677665443 34688899999888776788899999977543 44443
No 176
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=38.01 E-value=2.7e+02 Score=24.09 Aligned_cols=86 Identities=8% Similarity=0.041 Sum_probs=61.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhC
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELG 206 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i-~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~g 206 (242)
.++.++..|-+.. .++.+.+|++.-.+ -+.|=|-++...+..+++....+++|+.....-.- ..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi--~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP--SRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH--HHHHHHHHHhC
Confidence 5778888875432 45677777776544 46777888999999998877777788766654432 46789999999
Q ss_pred CcEEecccCcccc
Q 026166 207 IGIVAYSPLGRGF 219 (242)
Q Consensus 207 i~v~a~spl~~G~ 219 (242)
|.++..+.+..|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9998766554443
No 177
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.96 E-value=2.7e+02 Score=24.17 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=52.8
Q ss_pred CCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC--C--CCH--HHHHHHHHHHHHcC
Q 026166 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT--S--VSI--EDTMGELKKLVEEG 156 (242)
Q Consensus 83 ~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~--~~~--~~~~~~l~~l~~~G 156 (242)
-.+++.|..|+....... ...+.+... .+-+.|+..|+|+|+ +|.... . .+. ...++.++++++.=
T Consensus 218 vG~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~ 289 (336)
T cd02932 218 WPEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEA 289 (336)
T ss_pred cCCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhC
Confidence 345778888986532111 113344333 244456777766655 342110 0 011 12345666777766
Q ss_pred CcceEecCCC-CHHHHHHHhccCCceEEec
Q 026166 157 KIKYIGLSEA-SADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 157 ~i~~iGvS~~-~~~~l~~~~~~~~~~~~q~ 185 (242)
.+--++..+. +++..+++++....+.+++
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 6776777664 7888888888766666665
No 178
>PRK06740 histidinol-phosphatase; Validated
Probab=37.76 E-value=2.8e+02 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCCEEeCcccc
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVY 65 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Y 65 (242)
.......+++|++.|+..|=-++|-
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCCC
Confidence 3457899999999999988776663
No 179
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=37.47 E-value=2.5e+02 Score=26.19 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=42.6
Q ss_pred CCEEeCccccCCCChhHHHH------------------------HHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHH
Q 026166 56 ITLFDTSDVYGVDHDNEIMV------------------------GKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEY 111 (242)
Q Consensus 56 i~~~DtA~~Yg~~g~~e~~l------------------------g~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~ 111 (242)
||.+||..|-..+|+.|+++ ++||+ ..=.-|+++-|+.... ..|+.
T Consensus 70 INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~-~gL~PIVVvNKiDrp~---------Arp~~ 139 (603)
T COG1217 70 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA-LGLKPIVVINKIDRPD---------ARPDE 139 (603)
T ss_pred EEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH-cCCCcEEEEeCCCCCC---------CCHHH
Confidence 46778876655557777765 45555 3345577777775433 45888
Q ss_pred HHHHHHHHHHHcCC--CcccE
Q 026166 112 VRKCCEASLKRLDV--DYIDL 130 (242)
Q Consensus 112 i~~~l~~sL~~L~~--d~iDl 130 (242)
+..++-..+-.|+- |.+|+
T Consensus 140 Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 140 VVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred HHHHHHHHHHHhCCChhhCCC
Confidence 88888888888885 33444
No 180
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=37.43 E-value=77 Score=25.81 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNR-GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
+.+++..+.+...+. |+-|...++=|= +.+...+..+..+. .++++.+.. .+.+. +.+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V----s~~~a~~i~~~v~~-----~~~VgVf~n--------~~~~~----i~~ 69 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV----SPEQAREIASAVPK-----VKVVGVFVN--------ESIEE----ILE 69 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC----CHHHHHHHHHhCCC-----CCEEEEECC--------CCHHH----HHH
Confidence 566665555553443 555555566555 45555565554332 224443331 23333 344
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCC
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~ 167 (242)
.++.++ +|++|||...+. +.++.|.+...-.-++++.++.-.
T Consensus 70 i~~~~~---ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 70 IAEELG---LDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHhcC---CCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 555554 799999998532 233333333334578999998654
No 181
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=37.02 E-value=1.2e+02 Score=21.81 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=29.6
Q ss_pred cCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 163 vS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
.+..+.+++..++...+++++-+--..-.+...+++.++++++||++..+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3445566666665533344444322222222336788999999999887654
No 182
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=36.60 E-value=1.4e+02 Score=20.35 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=36.7
Q ss_pred cCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCC-CCHHHHHHHhccCCceEEeccc
Q 026166 123 LDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSE-ASADTIRRAHAVHPITAVQMEY 187 (242)
Q Consensus 123 L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G-~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~~~ 187 (242)
+.....|++++...-+..+ ..+.++++++.+ .++-|-+++ .+.....++++..-..++.-++
T Consensus 39 ~~~~~~d~iiid~~~~~~~---~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 39 LKKHPPDLIIIDLELPDGD---GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHSTESEEEEESSSSSSB---HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred hcccCceEEEEEeeecccc---ccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 3334489999986655444 445555555555 777777775 4456677776654333443333
No 183
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.38 E-value=1.8e+02 Score=23.71 Aligned_cols=85 Identities=21% Similarity=0.155 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC---cceEecCC-CCHHHHHHHhccC-CceEE
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK---IKYIGLSE-ASADTIRRAHAVH-PITAV 183 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~---i~~iGvS~-~~~~~l~~~~~~~-~~~~~ 183 (242)
.+.... +-+.|-.-|+.-+.+=+ -. ....+.+++++++-. =-.||..+ .+.++++.+++.. .|.+
T Consensus 24 ~~~a~~-~~~al~~~Gi~~iEit~---~~-----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv- 93 (213)
T PRK06552 24 KEEALK-ISLAVIKGGIKAIEVTY---TN-----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV- 93 (213)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEEC---CC-----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-
Confidence 444443 44556666765555422 11 125566666665421 13578776 6788888888763 3432
Q ss_pred ecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 184 QMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 184 q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++.. .++++++|+++|+.++
T Consensus 94 ----sP~~---~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 94 ----SPSF---NRETAKICNLYQIPYL 113 (213)
T ss_pred ----CCCC---CHHHHHHHHHcCCCEE
Confidence 2322 3789999999998876
No 184
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=36.26 E-value=3.5e+02 Score=24.99 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcC-Ccce---------EecCCCCHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV------SIEDTMGELKKLVEEG-KIKY---------IGLSEASADT 170 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~~l~~l~~~G-~i~~---------iGvS~~~~~~ 170 (242)
.+.+.... +-..|.++|++.|+++ ..... -.++.|+.|+.+++.. .++. +|..++.-+.
T Consensus 22 ~~t~dkl~-Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDMLP-ALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 44554444 5566888899999983 21110 0123577888777652 2332 2333333332
Q ss_pred ----HHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 171 ----IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 171 ----l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++.+.+ ..++++.+-..+-+...-...+++++++|..+.
T Consensus 97 v~~fv~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 139 (467)
T PRK14041 97 VELFVKKVAE-YGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQ 139 (467)
T ss_pred hHHHHHHHHH-CCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEE
Confidence 333333 345555554444443334678899999998765
No 185
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=36.15 E-value=3.3e+02 Score=24.58 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=76.1
Q ss_pred HHHHHHHhc--C-CCCCEEEEeecCcccCC-Cccc------CCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH
Q 026166 73 IMVGKALKQ--L-PRDKIQLATKFGCFMLD-GVSI------GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI 142 (242)
Q Consensus 73 ~~lg~~l~~--~-~R~~l~I~tK~~~~~~~-~~~~------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~ 142 (242)
+.+-++++. . +-+++.|..-+...... ...+ ...++++...+-+...++. .++.++..|-+..+
T Consensus 217 ~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D- 290 (408)
T cd03313 217 DLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKK-----YPIVSIEDPFDEDD- 290 (408)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC-
Confidence 345666654 1 23578887777432110 0000 1124445554444444443 35788888865443
Q ss_pred HHHHHHHHHHHHcC--CcceEecC--CCCHHHHHHHhccCCceEEecccCccCcC-hhhhHHHHHHHhCCcEEe
Q 026166 143 EDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 143 ~~~~~~l~~l~~~G--~i~~iGvS--~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a 211 (242)
|+.+.+|.+.- .+.-+|=- .+++..+.++++....+++|+..+-+-.- ...++...|+++|+.++.
T Consensus 291 ---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 291 ---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred ---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 55566666663 44433322 24789999999887788888877764432 227799999999999864
No 186
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.98 E-value=2.9e+02 Score=24.32 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQH 134 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh 134 (242)
.+.+.+++.++..+ .++.+++.+|.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 45666766666544 4777888777665
No 187
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.86 E-value=2.3e+02 Score=25.89 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEeCccccCCC--------ChhHHHHHHHHhcCCCCCE-EEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 45 CSIIKETFNRGITLFDTSDVYGVD--------HDNEIMVGKALKQLPRDKI-QLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~--------g~~e~~lg~~l~~~~R~~l-~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
.+.++...++|+|.+...-.-.++ +.+...+-++++......+ .|..-+-...+. .+.+.+++.
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg-------qt~e~~~~~ 223 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPK-------QTPESFART 223 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCC-------CCHHHHHHH
Q ss_pred HHHHHHHcCCCcccEEEec----------------cCCCCCCHHHHHHHHHHHHHcCCcceEecCCCC
Q 026166 116 CEASLKRLDVDYIDLYYQH----------------RVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh----------------~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~ 167 (242)
++..++ ++.+++.++.+- .|+.....+-.-.+.+.|.+.|... +++|+|.
T Consensus 224 l~~~~~-l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-ye~s~fa 289 (453)
T PRK09249 224 LEKVLE-LRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY-IGMDHFA 289 (453)
T ss_pred HHHHHh-cCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE-Eecccee
No 188
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=35.86 E-value=1.1e+02 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVG 76 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg 76 (242)
+.+++.+.++.+.+.|+..+..--.||-++.+...+.
T Consensus 132 ~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~ 168 (350)
T PRK08446 132 SQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLK 168 (350)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHH
Confidence 4455555555555555543322234443333333333
No 189
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=35.57 E-value=1.9e+02 Score=24.43 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCC--------CCCCHHHHHHHHHHHHHcCCcceEecC-----------CCCHHHHHH
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVD--------TSVSIEDTMGELKKLVEEGKIKYIGLS-----------EASADTIRR 173 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~--------~~~~~~~~~~~l~~l~~~G~i~~iGvS-----------~~~~~~l~~ 173 (242)
...+-..|.++|+++|++- .|. ......+.++.+.++..+-++..+.-+ +.....++.
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G---~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVW---GGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHcCCCEEEcc---CCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Q ss_pred HhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 174 AHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
+.+ ..++.+.+-+...+-+.-.+.+++++++|+.+...
T Consensus 100 ~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 100 AAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred HHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEE
No 190
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=35.39 E-value=2.8e+02 Score=23.57 Aligned_cols=114 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHH---HcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecCC----CCHHHHHHHhccC-
Q 026166 108 SPEYVRKCCEASLK---RLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSE----ASADTIRRAHAVH- 178 (242)
Q Consensus 108 ~~~~i~~~l~~sL~---~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~i~~iGvS~----~~~~~l~~~~~~~- 178 (242)
+++...+.+.+..+ ..|. ++.+.+-+...+ ..+.+.+.+..+.+.+.| +..|.++. .+|.++.++++..
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 44444443433333 3443 466666653322 345667777777888777 66777775 5577766665431
Q ss_pred -CceEEecccCccCcC-hhhhHHHHHHHhCCcEEecccCccccCCCC
Q 026166 179 -PITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFFAGK 223 (242)
Q Consensus 179 -~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 223 (242)
.+.-..+.+|.-+.. ..-.-.-.+-+.|+..+--+-.+-|--+|.
T Consensus 187 ~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN 233 (280)
T cd07945 187 KRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGN 233 (280)
T ss_pred hhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 111123444443322 112233345577888877666665644443
No 191
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=35.27 E-value=1.3e+02 Score=26.88 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=47.8
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---CCCCCEE
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPRDKIQ 88 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~R~~l~ 88 (242)
+.+|.+|..++.. ..++..+.+++.+.++.+.+.|+..+-.--.||-+|.+++.+-+.++. ...+.+.
T Consensus 126 vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is 200 (400)
T PRK07379 126 VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLS 200 (400)
T ss_pred CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 6788888876643 234445889999999999999998665556888667777776666554 4444443
No 192
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=35.21 E-value=1.3e+02 Score=26.13 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCCcceEecC--CCCHHHHHHHhccCCceEEec
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLS--EASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~-~~~~~l~~l~~~G~i~~iGvS--~~~~~~l~~~~~~~~~~~~q~ 185 (242)
.+.+++..+...++|+...+.+.+--..++...+. .+-+.|++|.++| ++.|=|. .|..++++.+.+.
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~ei-------- 276 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYEI-------- 276 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHHH--------
Confidence 56788888999999998766665554444322222 3678899999999 4544333 3555555555432
Q ss_pred ccCccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 186 EYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
+-+.-+.++++|+.-+.+-|.
T Consensus 277 ---------die~re~~~~~G~~~~~~ip~ 297 (316)
T PF00762_consen 277 ---------DIEYRELAEEAGGEEFVRIPC 297 (316)
T ss_dssp ---------CCHHHHHHHHHTCCEEEE---
T ss_pred ---------HHHHHHHHHHcCCceEEEeCC
Confidence 134567777777755555543
No 193
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=35.01 E-value=49 Score=29.92 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=29.1
Q ss_pred CcccccceecccccCC-cCCCCCCH----HHHHHHHHHHHHcCCC--EEeCccccC
Q 026166 18 GLEVSRLGFGCGGLSG-IYNKPLSH----EVGCSIIKETFNRGIT--LFDTSDVYG 66 (242)
Q Consensus 18 g~~vs~lglG~~~~~~-~~~~~~~~----~~~~~~l~~A~~~Gi~--~~DtA~~Yg 66 (242)
|+...++.||.-.+|- .|..- +. +.+.+++...+++|++ |+||+-.-.
T Consensus 79 g~~~~~iiLGGDHLGP~~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca 133 (424)
T PF08013_consen 79 GFPRDRIILGGDHLGPNPWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCA 133 (424)
T ss_dssp T--GGGEEEEEEEESSCCCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C--C
T ss_pred CCchhhEEecCCCCCcccccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCCCCC
Confidence 5566789999988874 45433 33 3568899999999999 889877654
No 194
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=35.00 E-value=2.6e+02 Score=23.19 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc--CCCC--CEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHH
Q 026166 45 CSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ--LPRD--KIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASL 120 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~R~--~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL 120 (242)
...+..|-+.|. ++ . -...++.++++. ..+. .+.++..+.... +....+...+.+.+
T Consensus 52 ~~Fi~~aE~~gl--i~---~-----l~~~v~~~a~~~~~~~~~~~~~~l~iNis~~~---------l~~~~~~~~l~~~l 112 (256)
T COG2200 52 GEFIPLAEETGL--IV---E-----LGRWVLEEACRQLRTWPRAGPLRLAVNLSPVQ---------LRSPGLVDLLLRLL 112 (256)
T ss_pred HHHHHHHHHcCC--HH---H-----HHHHHHHHHHHHHHhhhhcCCceEEEEcCHHH---------hCCchHHHHHHHHH
Confidence 455666666676 11 1 135556666654 1222 366777765422 12234455677788
Q ss_pred HHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCCH--HHHHHHhccCCceEEecccCccCc----
Q 026166 121 KRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQMEYSLWTR---- 192 (242)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~i~~iGvS~~~~--~~l~~~~~~~~~~~~q~~~~~~~~---- 192 (242)
++.+++.- -+.+.-.+.. ...+.+...+.+|++.| | .|.+..|.. .-+..+.+ .+++++-+.-+....
T Consensus 113 ~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~ 188 (256)
T COG2200 113 ARLGLPPH-RLVLEITESALIDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETD 188 (256)
T ss_pred HHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccC
Confidence 88876442 3333323222 23446888999999999 2 234443332 22333333 456666554444332
Q ss_pred ----ChhhhHHHHHHHhCCcEEeccc---------------CccccCCCCCCC
Q 026166 193 ----EIEDDIIPLCRELGIGIVAYSP---------------LGRGFFAGKAVV 226 (242)
Q Consensus 193 ----~~~~~l~~~~~~~gi~v~a~sp---------------l~~G~L~~~~~~ 226 (242)
..-..++..|++.|+.+++-.. +.+|++.+++.+
T Consensus 189 ~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGylf~~P~~ 241 (256)
T COG2200 189 ARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPLP 241 (256)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeecCCHHHHHHHHHcCCCeEeeccccCCCC
Confidence 1237799999999999996543 567777776443
No 195
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.93 E-value=3.7e+02 Score=24.86 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG 156 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G 156 (242)
...+++.+.+.++...++.|+.++ .+...+...+.+.+.+.++++++.|
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 345788999999998888886543 3333333334455667777778776
No 196
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.86 E-value=2.6e+02 Score=23.84 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCCCCH---HHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhc
Q 026166 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~---~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~ 176 (242)
..++.+.-.+.-++ ..+++++..|....+. .++|+.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 34555666666665 4699999999766553 578999999999997 778899999999888855
No 197
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.83 E-value=94 Score=28.51 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCeeecCCCCcccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEe--Ccc--cc-CC----CChhHHHHHHHH
Q 026166 9 VPRVKLGSQGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFD--TSD--VY-GV----DHDNEIMVGKAL 79 (242)
Q Consensus 9 m~~~~lg~~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~D--tA~--~Y-g~----~g~~e~~lg~~l 79 (242)
+|.-.| +|--.-|++-+-...+-.-|. +.+.. ...-+.|+..+- ||. .| |. .|+-|++..-+-
T Consensus 87 kPVgvF-kTh~~APrVlIaNsnlVp~wa---nwe~f----~el~~~Gl~myGQMTAGsWiYIGtQGIvqGTyeT~~~~~r 158 (561)
T COG2987 87 KPVGVF-KTHKDAPRVLIANSNLVPHWA---NWEHF----NELDAKGLTMYGQMTAGSWIYIGTQGIVQGTYETFAEAGR 158 (561)
T ss_pred CceeEe-ecCCCCCeEEEecCccccccc---cHHHH----HHHHhhhhhheecccccceEEEcccceeechHHHHHHHHH
Confidence 445555 566667777776555433232 22322 222234443332 111 11 11 156677665554
Q ss_pred hc---CCCCCEEEEeecCcccCCCc---------ccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHH
Q 026166 80 KQ---LPRDKIQLATKFGCFMLDGV---------SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMG 147 (242)
Q Consensus 80 ~~---~~R~~l~I~tK~~~~~~~~~---------~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~ 147 (242)
.. ..+-+++++.-++.-...++ ......+...|. .||.+.|+|. -...++|+++
T Consensus 159 ~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~-------~a~~ldeAl~ 224 (561)
T COG2987 159 QHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDE-------IAETLDEALA 224 (561)
T ss_pred HhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhh-------hcCCHHHHHH
Confidence 43 46678999988875433221 111223333333 5677888884 2346889999
Q ss_pred HHHHHHHcCCcceEecCCCCHHHHHHHhcc
Q 026166 148 ELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 148 ~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
..++..+.|+-.+||+-..-.+.+.++++.
T Consensus 225 ~a~~~~~ag~p~SIgl~GNaaei~~~l~~r 254 (561)
T COG2987 225 LAEEATAAGEPISIGLLGNAAEILPELLRR 254 (561)
T ss_pred HHHHHHhcCCceEEEEeccHHHHHHHHHHc
Confidence 999999999999999999999999999876
No 198
>PRK10200 putative racemase; Provisional
Probab=34.57 E-value=1.9e+02 Score=23.71 Aligned_cols=66 Identities=18% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------------VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRR 173 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~------------~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~ 173 (242)
-+.+++++=++..-.+.+.++++.+.+|.++.. .+.....+.++.|.+.| ++.|-+...++....+
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~ 91 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVAD 91 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHH
Confidence 346677777777778888899999999998421 12334556677777776 7889888877665433
No 199
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.56 E-value=3e+02 Score=24.15 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=63.1
Q ss_pred HhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026166 79 LKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (242)
Q Consensus 79 l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 158 (242)
+....|+++-++|++.......+-+.-..+ ..+.+.+-+.+++.|- +..+|.. +.++.....++....|++
T Consensus 17 lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G~----~~~~~k~----~~e~~~~~~r~~~~~~l~ 87 (326)
T PRK05458 17 CIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENGY----FYIMHRF----DPEARIPFIKDMHEQGLI 87 (326)
T ss_pred CCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcCC----EEEEecC----CHHHHHHHHHhccccccE
Confidence 333677888899988633211111111122 2778888888888873 5667773 233333333444455665
Q ss_pred ceEecCC--CCHHHHHHHhccC-CceEEecccCccCcChhhhHHHHHHHh--CCcEEe
Q 026166 159 KYIGLSE--ASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCREL--GIGIVA 211 (242)
Q Consensus 159 ~~iGvS~--~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~--gi~v~a 211 (242)
-.++++. ...+++.++++.. ..+++++....-+.....++++..+++ ++.|++
T Consensus 88 v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 88 ASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 4444433 3334455555432 246666654443332234555555544 355544
No 200
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.52 E-value=2.6e+02 Score=24.56 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=38.3
Q ss_pred cceEecCCCCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCccccC
Q 026166 158 IKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFF 220 (242)
Q Consensus 158 i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 220 (242)
++..-+...+.+.+++++.. .+..++..+.|+..... -+++.++|+++|+.++.=..++.+.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 33344444466777766543 34555556667743322 27899999999998886666554443
No 201
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.29 E-value=3.3e+02 Score=24.07 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHcCCCcccEEEeccCCCC-----------CCHHHHHHHHHHHHHcC-C---cceEec--CCCCHHHHHHHhcc---C
Q 026166 119 SLKRLDVDYIDLYYQHRVDTS-----------VSIEDTMGELKKLVEEG-K---IKYIGL--SEASADTIRRAHAV---H 178 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~-----------~~~~~~~~~l~~l~~~G-~---i~~iGv--S~~~~~~l~~~~~~---~ 178 (242)
.|...+...+++ -||.+++. .+++++++++.....+. + ++++=+ -|.+.++++++.+. .
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344556545553 57777542 24677888887654432 2 333322 25666666666543 4
Q ss_pred CceEEecccCccCcC----hh----hhHHHHHHHhCCcEEecccC------ccccCCCC
Q 026166 179 PITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPL------GRGFFAGK 223 (242)
Q Consensus 179 ~~~~~q~~~~~~~~~----~~----~~l~~~~~~~gi~v~a~spl------~~G~L~~~ 223 (242)
+..++-++||+.... +. ..+.+..+++|+.+...... ++|.|..+
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~aaCGqL~~~ 344 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAACGQLKAE 344 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHhccccchhh
Confidence 457888899986532 11 45777888899999887776 34555543
No 202
>PRK07328 histidinol-phosphatase; Provisional
Probab=33.91 E-value=2.8e+02 Score=23.16 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCEEeCcccc
Q 026166 43 VGCSIIKETFNRGITLFDTSDVY 65 (242)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Y 65 (242)
...+.+++|.+.|+..+=.+.|.
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~ 41 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHL 41 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCC
Confidence 36789999999999987766653
No 203
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.85 E-value=2.5e+02 Score=24.78 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=57.4
Q ss_pred EEEeccCCC-----------CCCHHHHHHHHHHHHHcC--Cc--ceEecC--CCCHHHHHHHhcc---CCceEEecccCc
Q 026166 130 LYYQHRVDT-----------SVSIEDTMGELKKLVEEG--KI--KYIGLS--EASADTIRRAHAV---HPITAVQMEYSL 189 (242)
Q Consensus 130 l~~lh~p~~-----------~~~~~~~~~~l~~l~~~G--~i--~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~ 189 (242)
.+-||.|++ ..+++++.+++++..++. +| -++=+. |.+.+++.++.+. .+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 478898854 234788888888865433 32 344333 5666666665543 557788899997
Q ss_pred cCcC-----hh---hhHHHHHHHhCCcEEecccCc
Q 026166 190 WTRE-----IE---DDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 190 ~~~~-----~~---~~l~~~~~~~gi~v~a~spl~ 216 (242)
.... .. ..+.+..+++|+.+......+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G 324 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRG 324 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 5431 11 567778889999999887764
No 204
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=41 Score=28.12 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCC
Q 026166 34 IYNKPLSHEVGCSIIKETFNRGI 56 (242)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi 56 (242)
.|...++++++.+++..|+++|+
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 47777899999999999999999
No 205
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=33.48 E-value=3.1e+02 Score=24.94 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHcCCC-EEeCccccCCCChhHHHHHHHH-hcCCCCCEEEEeecC----cccCCCcccCCCCCHHHHH
Q 026166 40 SHEVGCSIIKETFNRGIT-LFDTSDVYGVDHDNEIMVGKAL-KQLPRDKIQLATKFG----CFMLDGVSIGVKGSPEYVR 113 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~-~~DtA~~Yg~~g~~e~~lg~~l-~~~~R~~l~I~tK~~----~~~~~~~~~~~~~~~~~i~ 113 (242)
+.+.-.+-++.|++.|-. ..|-+. .| .-..+.+.+ +. ..+-|.|=-- ...........+.+++.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg----dl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~ 146 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG----DLDEIRRAIIEA---SPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLF 146 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC----CHHHHHHHHHHc---CCCCCcChhHHHHHHHHHhcCCChhhCCHHHHH
Confidence 666666779999999975 556554 22 334444443 32 1121211000 0000000122346677777
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcC
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (242)
+.+++-.+ +=+|++-+|.-- ..+.++.+++.|++ .|+-+-.-..+..-+..+. .=|++...
T Consensus 147 ~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R~--~giVSRGGs~~~~WM~~n~------~ENPlye~ 207 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGRI--MGIVSRGGSFLAAWMLHNN------KENPLYEH 207 (431)
T ss_pred HHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCCc--cCeecCCHHHHHHHHHHcC------CcCchHHH
Confidence 77766655 447889999752 56778888888865 4544444333333222111 12344433
Q ss_pred hhhhHHHHHHHhCCcEEecccCccccCCC
Q 026166 194 IEDDIIPLCRELGIGIVAYSPLGRGFFAG 222 (242)
Q Consensus 194 ~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 222 (242)
. +.+++.|++++|.+ .|+-|+-.|
T Consensus 208 f-D~lLeI~~~yDVtl----SLGDglRPG 231 (431)
T PRK13352 208 F-DYLLEILKEYDVTL----SLGDGLRPG 231 (431)
T ss_pred H-HHHHHHHHHhCeee----eccCCcCCC
Confidence 2 78999999999998 455555444
No 206
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=33.41 E-value=1.4e+02 Score=26.92 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEecccCccc
Q 026166 145 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 145 ~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
.-+.+..|.+.|.--+.|+.+-.-...+.+....-..+.+-+|+++....-.+..+..++.++.|.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45788889999999999999876666665555544556677899988765578899999999999988888754
No 207
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=33.38 E-value=3.3e+02 Score=23.82 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=50.6
Q ss_pred CCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcC-CCcccEEEeccCCC-----------C--CCHHHHHHH
Q 026166 83 PRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLD-VDYIDLYYQHRVDT-----------S--VSIEDTMGE 148 (242)
Q Consensus 83 ~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~-~d~iDl~~lh~p~~-----------~--~~~~~~~~~ 148 (242)
-..++.|..|++......+ ..+.+... .+-+.|+..| +|+|+ +|.... . ....-.|+.
T Consensus 205 vg~~~~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G~vd~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (343)
T cd04734 205 VGPDFIVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEGLIDYVN---VSAGSYYTLLGLAHVVPSMGMPPGPFLPL 276 (343)
T ss_pred cCCCCeEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcCCCCEEE---eCCCCCCcccccccccCCCCCCcchhHHH
Confidence 3467788889876442111 12343333 3445566666 45554 432110 0 011113566
Q ss_pred HHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEec
Q 026166 149 LKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 149 l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~ 185 (242)
....++.=++--+++.+ .+++.++++++....+.+.+
T Consensus 277 ~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 277 AARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 66666654566666665 47888888887765555544
No 208
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.92 E-value=4.1e+02 Score=24.78 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCC----HHHHHHHHHH-HH-----------HcCCcceEecCC------CCHHHH
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVS----IEDTMGELKK-LV-----------EEGKIKYIGLSE------ASADTI 171 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~----~~~~~~~l~~-l~-----------~~G~i~~iGvS~------~~~~~l 171 (242)
..++...+.++. .++++.++.|..... .+.+++++.+ +. +.+.|.-||.++ .+...+
T Consensus 102 dDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~Ei 180 (519)
T PRK02910 102 EDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTEL 180 (519)
T ss_pred cCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHH
Confidence 334444444454 367999998866543 2333333322 22 234588888864 233556
Q ss_pred HHHhccCCceEEec----------------ccCccC-cChhhhHHHHHH-HhCCcEEecccCc
Q 026166 172 RRAHAVHPITAVQM----------------EYSLWT-REIEDDIIPLCR-ELGIGIVAYSPLG 216 (242)
Q Consensus 172 ~~~~~~~~~~~~q~----------------~~~~~~-~~~~~~l~~~~~-~~gi~v~a~spl~ 216 (242)
.++++...+.++.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 181 krlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 181 RRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred HHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 66666544444432 222221 111234555555 5689988777765
No 209
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=32.76 E-value=3.3e+02 Score=23.60 Aligned_cols=134 Identities=9% Similarity=0.053 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC----------ccccCCC-ChhHHHHHHHHhcC-CCCCEEEEeecCcccCCCcccCCCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDT----------SDVYGVD-HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg~~-g~~e~~lg~~l~~~-~R~~l~I~tK~~~~~~~~~~~~~~~ 107 (242)
++++..+..+.+.+.|+..||. ...+|.. ...-+.+.+.++.. .--++-|+.|+...+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC--------
Confidence 6788778888888899999993 1222210 01133344433321 01134566676422210
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEe
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~--~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q 184 (242)
+..... .+-+.++..|. |.+.+|.-...... ...|+.+.++++.=.|--||... .++++++++++....+.++
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 23334667775 66677865321111 12478888888877787787776 4788888888765566666
Q ss_pred c
Q 026166 185 M 185 (242)
Q Consensus 185 ~ 185 (242)
+
T Consensus 223 i 223 (321)
T PRK10415 223 I 223 (321)
T ss_pred E
Confidence 5
No 210
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=32.74 E-value=2.7e+02 Score=22.51 Aligned_cols=110 Identities=16% Similarity=0.051 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.++-.+++..+++.|+.++|.--... .+...-.......+.+++++..-.... .+.+.+...+++.
T Consensus 73 ~~~~~~~ll~~~~~~~~d~iDiE~~~~----~~~~~~~~~~~~~~~~iI~S~H~f~~t---------p~~~~l~~~~~~~ 139 (224)
T PF01487_consen 73 SEEEYLELLERAIRLGPDYIDIELDLF----PDDLKSRLAARKGGTKIILSYHDFEKT---------PSWEELIELLEEM 139 (224)
T ss_dssp -HHHHHHHHHHHHHHTSSEEEEEGGCC----HHHHHHHHHHHHTTSEEEEEEEESS------------THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccc----hhHHHHHHHHhhCCCeEEEEeccCCCC---------CCHHHHHHHHHHH
Confidence 778889999999999999999765533 232221222224566777766633322 2344455544444
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
..+|.|.+=+..... ...+....+++..++++.-...-|+++.
T Consensus 140 -~~~gadivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 140 -QELGADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp -HHTT-SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred -HhcCCCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 477776655544422 2233445666666666653444444443
No 211
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=32.65 E-value=3e+02 Score=23.12 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc--CCceEEe
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQ 184 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~--~~~~~~q 184 (242)
.+.+.+.+...+.. .-|.+.||+-.= +......+.....++.+++.-.+ -|.+-+++++.++.+++. ...-+|-
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 34555555544443 568899998542 11112233455556666544222 378889999999999986 4333333
Q ss_pred cccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 185 MEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
+ +..... .+.+++.++++|+.++...-
T Consensus 98 I--s~~~~~-~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 98 V--SAEGEK-LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred C--CCCCcc-CHHHHHHHHHhCCCEEEEec
Confidence 3 221111 25789999999999887653
No 212
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=32.51 E-value=1.7e+02 Score=26.38 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcC-CcceEecCC---CCHHHHHHHhcc-CCceEEecccCccC-cChhhhHHHHHHHhCCcEEec
Q 026166 145 TMGELKKLVEEG-KIKYIGLSE---ASADTIRRAHAV-HPITAVQMEYSLWT-REIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 145 ~~~~l~~l~~~G-~i~~iGvS~---~~~~~l~~~~~~-~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~ 212 (242)
+++.++.|.++| .|.++.|-. .+++++++++.- ..+++++.--|-.- -.+-.++-+.|+++|+.+..=
T Consensus 104 Vl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 104 VLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 455555554445 455555553 345566666543 22222222111111 011256777777777655543
No 213
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=32.32 E-value=1.8e+02 Score=26.01 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEEecccCccCcChh-hhHHHHHHHhC-CcEEecccCccc
Q 026166 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELG-IGIVAYSPLGRG 218 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~g-i~v~a~spl~~G 218 (242)
...+.+.++++....-|...=+...+.+.++++++. .+..++..+-|+...-.+ ..+.+.|+++| +.++.=..++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 455666666655554454433444567777777764 456677777787755433 78999999998 999988888777
Q ss_pred cCCCC
Q 026166 219 FFAGK 223 (242)
Q Consensus 219 ~L~~~ 223 (242)
.+...
T Consensus 184 ~~~~p 188 (386)
T PF01053_consen 184 YNQNP 188 (386)
T ss_dssp TTC-G
T ss_pred eeecc
Confidence 65543
No 214
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.13 E-value=2.9e+02 Score=22.79 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=46.7
Q ss_pred HHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEec--ccCccCcChh
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQM--EYSLWTREIE 195 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~-~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q~--~~~~~~~~~~ 195 (242)
+..+|. |-+.+|..+.... ..--|+.+.++.+.-.+.-|.-.. .+.+++.++++....+-+.+ -++--... .
T Consensus 162 ~~~~g~---~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~-~ 237 (253)
T PRK02083 162 VEELGA---GEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEIT-I 237 (253)
T ss_pred HHHcCC---CEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCC-H
Confidence 355564 5567766442110 111366777777665555554443 46778888776533433333 11111111 2
Q ss_pred hhHHHHHHHhCCcE
Q 026166 196 DDIIPLCRELGIGI 209 (242)
Q Consensus 196 ~~l~~~~~~~gi~v 209 (242)
.++.+.|++.||.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (253)
T PRK02083 238 GELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHCCCcc
Confidence 68899999988865
No 215
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.77 E-value=3e+02 Score=22.85 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCcceEecCC----CCHHHHHHHhccC--CceEEecccCccCcCh-hhhHHHHHHHhCCcEEecc
Q 026166 141 SIEDTMGELKKLVEEGKIKYIGLSE----ASADTIRRAHAVH--PITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 141 ~~~~~~~~l~~l~~~G~i~~iGvS~----~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~s 213 (242)
+.+.+.+..+++.+.| +..|.+.. ..|+++.+++... .+. +.+.+|.-+..- .....-.|-+.|+..+--+
T Consensus 137 ~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s 214 (259)
T cd07939 137 DPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVT 214 (259)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEe
Confidence 4555666666666666 45566654 4566655554431 111 344555433321 1222233447888888777
Q ss_pred cCccccCCCC
Q 026166 214 PLGRGFFAGK 223 (242)
Q Consensus 214 pl~~G~L~~~ 223 (242)
-.+-|--+|+
T Consensus 215 ~~G~G~~aGN 224 (259)
T cd07939 215 VNGLGERAGN 224 (259)
T ss_pred cccccccccC
Confidence 7777755554
No 216
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.40 E-value=3.6e+02 Score=23.85 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=56.4
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCC----cceEec--CCCCHHHHHHHhcc---CCceEEecccCcc
Q 026166 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGL--SEASADTIRRAHAV---HPITAVQMEYSLW 190 (242)
Q Consensus 131 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~----i~~iGv--S~~~~~~l~~~~~~---~~~~~~q~~~~~~ 190 (242)
+-||.+++. .+.++++++++.+.+.+. ++++=+ -|.+.++++++.+. .+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 667777542 245889999998877542 334433 35555666666544 4456778899987
Q ss_pred CcC-----hh---hhHHHHHHHhCCcEEecccCc
Q 026166 191 TRE-----IE---DDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 191 ~~~-----~~---~~l~~~~~~~gi~v~a~spl~ 216 (242)
... .. ..+.+.++++|+.+......+
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 631 11 456777899999998777654
No 217
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=31.36 E-value=3.7e+02 Score=23.77 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHH---HHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVG---KALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg---~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
..++..+-++.|.+.|+..+-|+-++.. +.++..+. +.++..++-.+.+..-+.+.... .-+.+.. -
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~-~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~----~l~~S~~-----~ 83 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPE-EDAELYFHRFKELLKEANKLGLRVIVDVNPSILK----ELNISLD-----N 83 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCC-chHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHh----hcCCChH-----H
Confidence 5677889999999999999999999997 55544433 33333344555555544322100 0001111 1
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCC----ceEEec----ccC
Q 026166 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHP----ITAVQM----EYS 188 (242)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~----~~~~q~----~~~ 188 (242)
...+..+|.+-+- .|... .-++..++-++++--.+-.|+-+- .+..+++..+ +..+.. +|.
T Consensus 84 l~~f~e~G~~glR------lD~gf----S~eei~~ms~~~lkieLN~S~it~-~l~~l~~~~an~~nl~~cHNyYPr~yT 152 (360)
T COG3589 84 LSRFQELGVDGLR------LDYGF----SGEEIAEMSKNPLKIELNASTITE-LLDSLLAYKANLENLEGCHNYYPRPYT 152 (360)
T ss_pred HHHHHHhhhhhee------ecccC----CHHHHHHHhcCCeEEEEchhhhHH-HHHHHHHhccchhhhhhcccccCCccc
Confidence 1223333332111 12222 234455555666545666666665 6666665421 111111 122
Q ss_pred ccCcChhhhHHHHHHHhCCcEEecccCccc
Q 026166 189 LWTREIEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 189 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
-+.+..-.+.=++.+++++.+.||-+-.++
T Consensus 153 GLS~e~f~~kn~~fk~~~i~t~AFis~~~~ 182 (360)
T COG3589 153 GLSREHFKRKNEIFKEYNIKTAAFISSDGA 182 (360)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 222222256677889999999988765433
No 218
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.36 E-value=3.8e+02 Score=23.85 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTS 62 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA 62 (242)
+.++..++++.-.+.||..|+..
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEe
Confidence 77888899999889999999975
No 219
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.24 E-value=3.5e+02 Score=24.12 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=55.8
Q ss_pred EEeccCCC------------CCCHHHHHHHHHH-HHHcCC---cceEecC--CCCHHHHHHHhcc---CCceEEecccCc
Q 026166 131 YYQHRVDT------------SVSIEDTMGELKK-LVEEGK---IKYIGLS--EASADTIRRAHAV---HPITAVQMEYSL 189 (242)
Q Consensus 131 ~~lh~p~~------------~~~~~~~~~~l~~-l~~~G~---i~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~ 189 (242)
+-||.+++ ..+++++++++.+ +.+.|+ |+++=+. |.+.+++..+.+. .+..++-++||+
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 67887642 2356788888875 445552 3444333 4555555555543 446778889998
Q ss_pred cCcC--------hhhhHHHHHHHhCCcEEecccCc
Q 026166 190 WTRE--------IEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 190 ~~~~--------~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
+... .-..+.+..+++|+.+......+
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G 352 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYG 352 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCC
Confidence 7642 12568888899999999887764
No 220
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.20 E-value=4.8e+02 Score=24.96 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE---EeccCCCCCCHHHHHHHHHHHHHcC-Ccce---------EecCCCCHHHHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLY---YQHRVDTSVSIEDTMGELKKLVEEG-KIKY---------IGLSEASADTIRR 173 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~---~lh~p~~~~~~~~~~~~l~~l~~~G-~i~~---------iGvS~~~~~~l~~ 173 (242)
.+.+.... +-..|.+.|++.|+++ -++.. ...-.++-|+.|+.+++.. .++. +|.+++.-+.++.
T Consensus 23 ~~t~d~l~-ia~~l~~~G~~~iE~~ggatfd~~-~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 23 MRTEDMLP-IAEKLDKVGFWSLEVWGGATFDVC-IRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEecCCccchhh-cccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 44444443 5566888899999984 11100 0001235788998888773 2332 4455555444333
Q ss_pred Hhcc---CCceEEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 174 AHAV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 174 ~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
..+. ..++++.+-..+.+...-...+++++++|..+.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 140 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQ 140 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEE
Confidence 3222 345555555444444334678899999998775
No 221
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=31.15 E-value=3.4e+02 Score=23.26 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-CHHHHHHHhccCCceEEecc
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 186 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 186 (242)
+++.+++.++..++ .+-+.+--+-++..+...+.+.....++.+++.|.--.+=++.. +...+..++.......+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 36677777777665 22222222233433333345667777888888887655544432 23334444322111111000
Q ss_pred cCccCcChhhhHHHHHHHhCCcEE
Q 026166 187 YSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
+++ ...++.++..+++|+.+.
T Consensus 217 ~~l---~~~~~~i~~l~~~gi~v~ 237 (324)
T TIGR01430 217 VRA---LEDPELLKRLAQENITLE 237 (324)
T ss_pred hhh---ccCHHHHHHHHHcCceEE
Confidence 111 112568899999998874
No 222
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=31.14 E-value=2.9e+02 Score=22.47 Aligned_cols=134 Identities=14% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
.+.++..++++.|.+.|+..+=..+.| -....+.|+ ..++-|.|=++.+... ...+.-...+++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~------v~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~ 78 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY------VPLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKE 78 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH------HHHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHH
Confidence 478999999999999998877554433 233444443 3467777777654422 233444444555
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CC-cceE-ecCCCCHHHHHHHhcc---CCceEEecc--cCc
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GK-IKYI-GLSEASADTIRRAHAV---HPITAVQME--YSL 189 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~-i~~i-GvS~~~~~~l~~~~~~---~~~~~~q~~--~~~ 189 (242)
.++ +|.|-||+++--..-...+.+.+.+.+.+.++. |+ ++-| =.+-.+.+++.++.+. ...+++... |..
T Consensus 79 Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 79 AIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred HHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 554 699999987765433334567777788877764 44 2332 1112344555555443 456667766 553
No 223
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=31.11 E-value=85 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCCcceE
Q 026166 141 SIEDTMGELKKLVEEGKIKYI 161 (242)
Q Consensus 141 ~~~~~~~~l~~l~~~G~i~~i 161 (242)
...+.++.|..++++|||+++
T Consensus 290 ~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 290 KYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred hhHHHHHHHHHHHhcCceEEe
Confidence 346788999999999999976
No 224
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=30.72 E-value=3.2e+02 Score=24.17 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEE
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAV 183 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~ 183 (242)
..++.+...+ +-+.|.++|+++|.+-+ |.. .++-|+.++.+.+.+. .+-.+++....+.++.+.+.. ++.+
T Consensus 17 ~~~s~~~k~~-ia~~L~~~Gv~~IEvG~---p~~---~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i 88 (363)
T TIGR02090 17 VSLTVEQKVE-IARKLDELGVDVIEAGF---PIA---SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSI 88 (363)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEeC---CCC---ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEE
Confidence 3455555554 56669999999988743 322 1234677777776655 444556667788888887652 2333
Q ss_pred ec--ccCccC------cC------hhhhHHHHHHHhCCcEE
Q 026166 184 QM--EYSLWT------RE------IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 184 q~--~~~~~~------~~------~~~~l~~~~~~~gi~v~ 210 (242)
.+ ..|..+ .. .-.+.+++|+++|..+.
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 33 222111 11 11568889999998764
No 225
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=30.60 E-value=3.7e+02 Score=23.51 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=46.0
Q ss_pred EEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCC
Q 026166 88 QLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 167 (242)
Q Consensus 88 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~ 167 (242)
+|..|+.......+ .....+.+... .+-+.|+..|+|++++- |.........-.++....+++.=.+--+++.+++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 47778765431100 01123344333 35556666677666652 2211110111234444445554456666666666
Q ss_pred HHHHHHHhccCCceEEec
Q 026166 168 ADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~ 185 (242)
++..+++++....+.+-+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 777777777655555443
No 226
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=30.55 E-value=3.5e+02 Score=23.25 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc---------cccCCC--ChhHHHHHHHHhcC-CCCCEEEEeecCcccCCCcccCCCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTS---------DVYGVD--HDNEIMVGKALKQL-PRDKIQLATKFGCFMLDGVSIGVKG 107 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---------~~Yg~~--g~~e~~lg~~l~~~-~R~~l~I~tK~~~~~~~~~~~~~~~ 107 (242)
++++..+....+.+.|+..||.- ..|+.. ....+.+.+.++.+ ..-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 77888888999999999988852 123310 01234555555532 11235577776422110
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC--HHHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEe
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS--IEDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~--~~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q 184 (242)
+.... ..+-+.|+..|+ |.+.+|....... -...|+.+.++++.=.+--|+... .+++++.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 234455677785 5556675322111 123578888888776677777665 5678888888655555555
Q ss_pred c
Q 026166 185 M 185 (242)
Q Consensus 185 ~ 185 (242)
+
T Consensus 221 i 221 (319)
T TIGR00737 221 I 221 (319)
T ss_pred E
Confidence 5
No 227
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=30.50 E-value=3.9e+02 Score=23.71 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=55.5
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCCcceEec-------CCCCHHHHHHHh---ccCCceEEecccC
Q 026166 130 LYYQHRVDTS-----------VSIEDTMGELKKLVEEGKIKYIGL-------SEASADTIRRAH---AVHPITAVQMEYS 188 (242)
Q Consensus 130 l~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~i~~iGv-------S~~~~~~l~~~~---~~~~~~~~q~~~~ 188 (242)
.+.||.|+.. .+.++.+++.+....... +.|-+ -|-+.++.+++. ...+..++-++||
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 3779998642 235677777777665544 33322 144455555444 4456689999999
Q ss_pred ccCcCh--------hhhHHHHHHHhCCcEEecccCc
Q 026166 189 LWTREI--------EDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 189 ~~~~~~--------~~~l~~~~~~~gi~v~a~spl~ 216 (242)
++.... -..+++..+++||.+....+-+
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 987531 1557777778899998887753
No 228
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=30.34 E-value=1.4e+02 Score=27.47 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
..++++|+.+| ++|++++. .+..+.|.+|.++-.|..|-...
T Consensus 54 ~~L~~~L~~~G---~~L~v~~~-------g~~~~~l~~l~~~~~i~~v~~~~ 95 (475)
T TIGR02766 54 AHLDQSLRSLG---TCLVTIRS-------TDTVAALLDCVRSTGATRLFFNH 95 (475)
T ss_pred HHHHHHHHHcC---CceEEEeC-------CCHHHHHHHHHHHcCCCEEEEec
Confidence 45677777777 57777642 12456677777777777775543
No 229
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.20 E-value=2.8e+02 Score=21.99 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCCcceEecCCCCH--HHHHHHhccCCceEEec
Q 026166 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDT--SVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQM 185 (242)
Q Consensus 110 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~--~~l~~~~~~~~~~~~q~ 185 (242)
+.....+...++..+... +-+.+.-++. ........+.++.+++.|-- +++.+|.. ..+..+.. .+++++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~--l~ld~~g~~~~~~~~l~~-~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGVR--IALDDFGTGYSSLSYLKR-LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCCe--EEEeCCCCcHhhHHHHHh-CCCCEEEE
Confidence 344566778888888754 2233333322 23345588999999999983 55555432 22333332 34566555
Q ss_pred ccCccCc--------ChhhhHHHHHHHhCCcEEecc
Q 026166 186 EYSLWTR--------EIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 186 ~~~~~~~--------~~~~~l~~~~~~~gi~v~a~s 213 (242)
..+.... ..-+.++..|+..|+.+++-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 5443322 112668899999999988654
No 230
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.84 E-value=3.5e+02 Score=22.98 Aligned_cols=154 Identities=11% Similarity=0.060 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHcC-CCEEeC---ccccCC----CChhHHHHHHHHhcCCC-CCEEEEeecCcccCCCcccCCCCCHH
Q 026166 40 SHEVGCSIIKETFNRG-ITLFDT---SDVYGV----DHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPE 110 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~Yg~----~g~~e~~lg~~l~~~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~ 110 (242)
+.++..+..+.+-+.| +..|+- +++... -+...+.+-+.++.+.. -++-|..|+.... +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 6777888888888888 888875 111110 02245566666654222 1567888885321 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-eccCC--CC--------------CC--HHHHHHHHHHHHHcCCcceEecCCC-CHHH
Q 026166 111 YVRKCCEASLKRLDVDYIDLYY-QHRVD--TS--------------VS--IEDTMGELKKLVEEGKIKYIGLSEA-SADT 170 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~-lh~p~--~~--------------~~--~~~~~~~l~~l~~~G~i~~iGvS~~-~~~~ 170 (242)
.+. .+-+.++..|.|.|++.- ++... .. .+ ..-.++.+.++++.=.+--||+... +++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 233457778887776532 11110 00 00 0114666777777656788888874 7888
Q ss_pred HHHHhccCCceEEecccCccC-c----ChhhhHHHHHHHhCC
Q 026166 171 IRRAHAVHPITAVQMEYSLWT-R----EIEDDIIPLCRELGI 207 (242)
Q Consensus 171 l~~~~~~~~~~~~q~~~~~~~-~----~~~~~l~~~~~~~gi 207 (242)
..+++... .+.+|+-=-++. . ....++-+++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888643 577775222222 1 123567777777775
No 231
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=29.44 E-value=3.1e+02 Score=24.19 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCcccc
Q 026166 166 ASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
.+++.++++++. .+..++..+.|+.-.-. -+++.+.|+++|+.++.=..++.+.
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 456677766642 34445555566544322 2678889999998888666654443
No 232
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.32 E-value=2.4e+02 Score=20.96 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCCEEeCcccc
Q 026166 45 CSIIKETFNRGITLFDTSDVY 65 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Y 65 (242)
...+..+++.|+|+||.--.+
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWD 51 (135)
T ss_pred HHHHHHHHHhCCCEEEEEccc
Confidence 568889999999999954333
No 233
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=29.26 E-value=1.5e+02 Score=23.14 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCCcc----cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc
Q 026166 112 VRKCCEASLKRLDVDYI----DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 112 i~~~l~~sL~~L~~d~i----Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
.+..++..++++|.+.- +.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 34556666777775421 1111111 11123346778899999887 55566888887777766654
No 234
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.06 E-value=4.1e+02 Score=23.60 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEE
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAV 183 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~ 183 (242)
..++.+...+ +-+.|.++|+++|++- +|.. -++-|+.++.+.+.|. .+.++.+......++.+.+. .++.+
T Consensus 21 ~~~s~e~k~~-ia~~L~~~GV~~IE~G---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i 92 (378)
T PRK11858 21 VVFTNEEKLA-IARMLDEIGVDQIEAG---FPAV---SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAV 92 (378)
T ss_pred CCCCHHHHHH-HHHHHHHhCCCEEEEe---CCCc---ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEE
Confidence 3456665554 5566999999999874 3432 1233666666666554 44455555557778887764 23333
Q ss_pred ecccCccCc--------------ChhhhHHHHHHHhCCcEEec
Q 026166 184 QMEYSLWTR--------------EIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 184 q~~~~~~~~--------------~~~~~l~~~~~~~gi~v~a~ 212 (242)
.+-+...+. ..-.+.+++++++|..+...
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 333222221 01156888999999887654
No 235
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.05 E-value=4e+02 Score=23.47 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEeccC-----------CCCCCHHHHHHHHHHHHHcCCcc----eEecCCCCH-----HHHHHHhccCCceEEecccCcc
Q 026166 131 YYQHRV-----------DTSVSIEDTMGELKKLVEEGKIK----YIGLSEASA-----DTIRRAHAVHPITAVQMEYSLW 190 (242)
Q Consensus 131 ~~lh~p-----------~~~~~~~~~~~~l~~l~~~G~i~----~iGvS~~~~-----~~l~~~~~~~~~~~~q~~~~~~ 190 (242)
+-||.| ....+++++++++.++.++-.-+ ++=+.+++- +.+.++++..+..++-++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Q ss_pred CcChh-------hhHHHHHHHhCCcEEecccCcc
Q 026166 191 TREIE-------DDIIPLCRELGIGIVAYSPLGR 217 (242)
Q Consensus 191 ~~~~~-------~~l~~~~~~~gi~v~a~spl~~ 217 (242)
..... ..+.+..+++||.+......+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 236
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.98 E-value=3.6e+02 Score=22.89 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=14.6
Q ss_pred hhHHHHHHHhCCcEEeccc
Q 026166 196 DDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~sp 214 (242)
.++.++|+++||..+-.-+
T Consensus 137 ~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHcCCcEEEEeC
Confidence 5789999999998775433
No 237
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.92 E-value=82 Score=26.83 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe-ccCCCCCCHHHHHHHHHHHHHcC-------CcceEecCCCCHHHHHHHhcc
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTSVSIEDTMGELKKLVEEG-------KIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~~~~~~~~~~~l~~l~~~G-------~i~~iGvS~~~~~~l~~~~~~ 177 (242)
.++.+.-.+-++..++.+|+++|++-.. ..| + -++++.++.+.. +++.+++... ...++.+.+.
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~------~-e~~av~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~A~~~ 86 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVSE------G-EFEAVQKIIDWAAEEGLLDRIEVLGFVDG-DKSVDWIKSA 86 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCH------H-HHHHHHHHHHHhhhhccccCcEEEEecCc-HHHHHHHHHC
Confidence 4566666666666679999988887532 122 1 124444443322 3455555433 3456666554
Q ss_pred CCceEEec---------ccCccCcCh-----hhhHHHHHHHhCCcEEe
Q 026166 178 HPITAVQM---------EYSLWTREI-----EDDIIPLCRELGIGIVA 211 (242)
Q Consensus 178 ~~~~~~q~---------~~~~~~~~~-----~~~l~~~~~~~gi~v~a 211 (242)
. .+.+.+ .+++-.... -.+++++|+++|+.+..
T Consensus 87 g-~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~ 133 (280)
T cd07945 87 G-AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNI 133 (280)
T ss_pred C-CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1 122222 222211111 14568999999987643
No 238
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=28.75 E-value=40 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCCEEeCccccC
Q 026166 45 CSIIKETFNRGITLFDTSDVYG 66 (242)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg 66 (242)
...+...++.|+|+||---.++
T Consensus 29 ~~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp SHHHHHHHHTT--EEEEEEEEE
T ss_pred hHhHHHHHhccCceEEEEEEcC
Confidence 4678899999999999644443
No 239
>PRK05968 hypothetical protein; Provisional
Probab=28.48 E-value=3.6e+02 Score=23.95 Aligned_cols=53 Identities=8% Similarity=0.064 Sum_probs=33.8
Q ss_pred CHHHHHHHhccCCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCcccc
Q 026166 167 SADTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 167 ~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
+++.+++++...++.+++.+.|+.-...+ +.+.+.|+++|+.++.=..++.+.
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 56667666644455566655665543222 678889999999888666555443
No 240
>PLN02438 inositol-3-phosphate synthase
Probab=28.32 E-value=3.7e+02 Score=25.09 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCC----CHHHHHHHHHHHHHcCC
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEGK 157 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~ 157 (242)
.+.|++.++.-.++-++|++=++...+-+... ...+++++|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 46788888888889998885555544433221 23467888888888765
No 241
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.30 E-value=1.7e+02 Score=20.55 Aligned_cols=61 Identities=13% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHcCCcceEecCCCCHH---HHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEE
Q 026166 149 LKKLVEEGKIKYIGLSEASAD---TIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 210 (242)
Q Consensus 149 l~~l~~~G~i~~iGvS~~~~~---~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 210 (242)
++++.+...+..+-+++-+.. .+..+++.....++.=+...- ...-.++++.|+++|+.++
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~-~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALT-LEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSS-HHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCC-HHHHHHHHHHHHHhCCEEE
Confidence 334444445555555554433 334444444444444333331 1122789999999998875
No 242
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=28.29 E-value=1.8e+02 Score=25.11 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccc--EEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYID--LYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iD--l~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~ 174 (242)
.......+++.+.|+.||+++ | .+. -....+-.-+++++|+++|++= . +..+.+++++.
T Consensus 51 R~~~~~~~~I~~dL~wlGl~w-De~~~~-----QS~r~~~Y~~~~~~L~~~G~aY-~--C~Ctr~el~~~ 111 (299)
T PRK05710 51 REVPGAADAILADLEWLGLHW-DGPVLY-----QSQRHDAYRAALDRLRAQGLVY-P--CFCSRKEIAAA 111 (299)
T ss_pred ccchHHHHHHHHHHHHCCCCC-CCCceE-----eeccHHHHHHHHHHHHHCCCce-e--cCCCHHHHHHH
Confidence 345677888999999999975 4 111 1123555678888999999852 2 23345556544
No 243
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.21 E-value=1.1e+02 Score=29.16 Aligned_cols=34 Identities=29% Similarity=0.155 Sum_probs=25.8
Q ss_pred ccCC-CChhHHHHHHHHhcCCCCCEEEEeecCccc
Q 026166 64 VYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFM 97 (242)
Q Consensus 64 ~Yg~-~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~ 97 (242)
.|+- ++..|+.+-+++++..+.+-+|+-|.|...
T Consensus 228 lygEiGg~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 228 VLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEecCchhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4443 467888888888865578889999998765
No 244
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.03 E-value=2.1e+02 Score=25.46 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=64.2
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---CCCCCEEEEe-e
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPRDKIQLAT-K 92 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~R~~l~I~t-K 92 (242)
+.+|.+|..++.. ..+...+.+++.+.++.+.+.|+..+..--.||-++.+...+-+.++. ...+.+.+.. .
T Consensus 118 v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~ 197 (378)
T PRK05660 118 VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLT 197 (378)
T ss_pred CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccE
Confidence 6688888766642 123334788999999999999997655556888667777766665554 3334333211 1
Q ss_pred cCc--ccCCCcccCCC-CCHHHHHHHHHHHHHHcCCCcccEEEeccCC
Q 026166 93 FGC--FMLDGVSIGVK-GSPEYVRKCCEASLKRLDVDYIDLYYQHRVD 137 (242)
Q Consensus 93 ~~~--~~~~~~~~~~~-~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~ 137 (242)
+.. .........+. -....+.+...+.|+.-|-.+.-+-....|+
T Consensus 198 ~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 245 (378)
T PRK05660 198 IEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPG 245 (378)
T ss_pred eccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCC
Confidence 100 00000000000 0112344556677777776665555554443
No 245
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.01 E-value=3e+02 Score=21.63 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcce-EecCCCCHHHHHHHhccCCceEEec
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY-IGLSEASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~-iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (242)
.++..+.+.++ .+.+.|.|+|-+-+...+... .....++.++++++...+.- +.+-..++....+.+.....+.+|+
T Consensus 8 ~~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 34555555544 455778888777543333211 11134566666665433222 6666666665444444455667666
Q ss_pred ccCccCcChhhhHHHHHHHhCCcE
Q 026166 186 EYSLWTREIEDDIIPLCRELGIGI 209 (242)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~gi~v 209 (242)
..... ......++.+++.|+.+
T Consensus 86 h~~~~--~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 86 HPEAS--EHIHRLLQLIKDLGAKA 107 (210)
T ss_pred ccCCc--hhHHHHHHHHHHcCCcE
Confidence 44332 22256677777777654
No 246
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.00 E-value=4.5e+02 Score=23.67 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=33.2
Q ss_pred ccEEEeccCCCCCCH----HHHHHHHHHH-------HHcCCcceEecCCC---CHHHHHHHhccCCceEEe
Q 026166 128 IDLYYQHRVDTSVSI----EDTMGELKKL-------VEEGKIKYIGLSEA---SADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 128 iDl~~lh~p~~~~~~----~~~~~~l~~l-------~~~G~i~~iGvS~~---~~~~l~~~~~~~~~~~~q 184 (242)
+.++.++.|...... +.++++|.+. ++.++|.-||-++. +.+.+.++++...+.++.
T Consensus 117 ~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 117 FPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred CeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 567888888755332 2344444432 23456777876664 356777777765444444
No 247
>PLN02775 Probable dihydrodipicolinate reductase
Probab=27.92 E-value=2.8e+02 Score=23.83 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 177 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~ 177 (242)
+++.|..+.-++.|++++..-. .+.+.+.++.+.+.|+--=+|.+.|+.+++.++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 4556655555678877775543 345778888888888888889999998888777654
No 248
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.91 E-value=3.1e+02 Score=21.82 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEA 118 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~ 118 (242)
.+.++..++++.|.+.|+..+=+.+.+- + ...+.++ ...+.+.+=.+..... ...+....++++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v-----~-~~~~~l~---~~~~~v~~~~~fp~g~-------~~~~~k~~eve~ 77 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV-----P-LAREALK---GSGVKVCTVIGFPLGA-------TTTEVKVAEARE 77 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH-----H-HHHHHcC---CCCcEEEEEEecCCCC-------CcHHHHHHHHHH
Confidence 3788999999999998877665444222 2 2333443 2345555555433311 335666667888
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCc-ce-EecCCCCHHHHHHHhcc---CCceEEecc--cCc
Q 026166 119 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKI-KY-IGLSEASADTIRRAHAV---HPITAVQME--YSL 189 (242)
Q Consensus 119 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~i-~~-iGvS~~~~~~l~~~~~~---~~~~~~q~~--~~~ 189 (242)
+++ +|.|-+|+++-=..-.....++.++.+.++++. |+. +. +.....+.+.+..+.+. ...+++... |..
T Consensus 78 A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~ 156 (203)
T cd00959 78 AIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP 156 (203)
T ss_pred HHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 777 699999986654332234556677788877776 432 22 23344556666666554 346677766 543
No 249
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=27.86 E-value=29 Score=30.73 Aligned_cols=157 Identities=18% Similarity=0.133 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhH---HHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNE---IMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e---~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
+.++..+.|+.|.+.|++.+-|+=+... ...+ ..+.+.++......+.|+.-+.+..... ...+.+. +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe-~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~----lg~~~~d----l 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE-DDPEDYLERLKELLKLAKELGMEVIADISPKVLKK----LGISYDD----L 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT----TT-BTTB----T
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC-CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH----cCCCHHH----H
Confidence 6788999999999999999999987753 2122 2223333322345566665554322000 0001100 1
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCC-ceEEecccCccCcC--
Q 026166 117 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTRE-- 193 (242)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~-- 193 (242)
..+..||++.+- + |.... .+.+.+|-++|.--.+=.|+.+.+.++.+++... +.-+..-.|.+.+.
T Consensus 83 -~~~~~lGi~~lR---l---D~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T 151 (357)
T PF05913_consen 83 -SFFKELGIDGLR---L---DYGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT 151 (357)
T ss_dssp -HHHHHHT-SEEE---E---SSS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-
T ss_pred -HHHHHcCCCEEE---E---CCCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC
Confidence 234556654332 2 32222 2344445555776678888888889999987642 33333333444443
Q ss_pred -----hhhhHHHHHHHhCCcEEecccCc
Q 026166 194 -----IEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 194 -----~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
.-.+.=.+.++.|+.+.|+-|-.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~ 179 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGD 179 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--S
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 12455667889999999987755
No 250
>PRK07094 biotin synthase; Provisional
Probab=27.85 E-value=3.9e+02 Score=22.88 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----cccCCCChhHHHHHHHHhcCCC-CCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTS----DVYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~~g~~e~~lg~~l~~~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
+.++..+.++.+.+.|++.|--. +.|. ...+-+.++.... .++.+..-.+. .+.+.+
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~-----~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l-- 132 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYT-----DEKIADIIKEIKKELDVAITLSLGE-----------RSYEEY-- 132 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCC-----HHHHHHHHHHHHccCCceEEEecCC-----------CCHHHH--
Confidence 78888899999999999877422 2222 2333334433211 34433322211 223322
Q ss_pred HHHHHHHHcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHcCCcc----eEecCCCCHHHHHHHhc
Q 026166 115 CCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEEGKIK----YIGLSEASADTIRRAHA 176 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl~~lh~p--------~~~~~~~~~~~~l~~l~~~G~i~----~iGvS~~~~~~l~~~~~ 176 (242)
+.|+..|++.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+++.+.++
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 3456667665442 11111 12345678889999999998621 24665667776665544
No 251
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.85 E-value=3.6e+02 Score=24.43 Aligned_cols=58 Identities=7% Similarity=0.029 Sum_probs=32.9
Q ss_pred ceEecCCCCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCc
Q 026166 159 KYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 159 ~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~ 216 (242)
+-+-+...+++.+++++.. .+..++..+-|+.-... -+++.++|+++|+.++.=..++
T Consensus 130 ~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 130 TVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred EEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 3333333466777776643 34444444445433221 2678888888888887555544
No 252
>PRK00915 2-isopropylmalate synthase; Validated
Probab=27.85 E-value=5.1e+02 Score=24.21 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++-.++.+.-.+.|+..|+...
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 778888999998899999999754
No 253
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=27.82 E-value=4.5e+02 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=15.8
Q ss_pred hhHHHHHHHhCCcEEeccc
Q 026166 196 DDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~a~sp 214 (242)
..+.+.|++|||.||+=..
T Consensus 181 ~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 181 RKIAELCLRHGVRVISDEI 199 (388)
T ss_pred HHHHHHHHHcCCEEEeecc
Confidence 6789999999999996444
No 254
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=27.78 E-value=3.8e+02 Score=22.93 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=56.5
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHH-----HHHHHHHHcCCcceEecCCCCHHH-------HHHHhccCCceEEeccc
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTM-----GELKKLVEEGKIKYIGLSEASADT-------IRRAHAVHPITAVQMEY 187 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~-----~~l~~l~~~G~i~~iGvS~~~~~~-------l~~~~~~~~~~~~q~~~ 187 (242)
++-++-..+|++.+..+.......+.. +.+.++.++--=|++|..+.++.. +++......++-+++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 677788889988888422222222222 467777777778888888876653 333333334443333
Q ss_pred CccCc-----Chh-hhHHHHHHHhCCcEEeccc
Q 026166 188 SLWTR-----EIE-DDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 188 ~~~~~-----~~~-~~l~~~~~~~gi~v~a~sp 214 (242)
++... +.. ..++++|+++|+.|+-...
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG 165 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTG 165 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeC
Confidence 22221 111 5699999999999977443
No 255
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.65 E-value=4.3e+02 Score=23.33 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHc-CC---cceEec--CCCCHHHHHHHhcc---CCceEEecccCccCcC-----hh---hhHHHHH
Q 026166 140 VSIEDTMGELKKLVEE-GK---IKYIGL--SEASADTIRRAHAV---HPITAVQMEYSLWTRE-----IE---DDIIPLC 202 (242)
Q Consensus 140 ~~~~~~~~~l~~l~~~-G~---i~~iGv--S~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~-----~~---~~l~~~~ 202 (242)
.++++..+++.++.++ |+ +-++=+ -|-+++++.++.+. .++.++-++||+.... .. ..+.+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 4678888888777554 32 123322 26677777666654 4567888899986532 11 4677788
Q ss_pred HHhCCcEEecccC------ccccCCCC
Q 026166 203 RELGIGIVAYSPL------GRGFFAGK 223 (242)
Q Consensus 203 ~~~gi~v~a~spl------~~G~L~~~ 223 (242)
+++||.+...... ++|.|..+
T Consensus 303 ~~~gi~~tiR~~~G~di~aACGqL~~~ 329 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDVDGGCGQLRAR 329 (344)
T ss_pred HHCCceEEEECCCCCchhhcCcchhhh
Confidence 8999999988876 45666554
No 256
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=27.51 E-value=1.8e+02 Score=24.73 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~ 174 (242)
.......+++.+.|+.||+++=.-.. --+...+...+++++|+++|++= .+..+.+.+++.
T Consensus 46 R~~~~~~~~I~~dL~wLGl~wDe~~~----~QS~r~~~Y~~~~~~L~~~G~aY---~C~Ct~eel~~~ 106 (272)
T TIGR03838 46 REVPGAADDILRTLEAYGLHWDGEVV----YQSQRHALYQAALDRLLAAGLAY---PCQCTRKEIAAA 106 (272)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCee----eeeCCHHHHHHHHHHHHHcCCEE---ecCCCHHHHHHH
Confidence 34566778899999999997521111 11234566778889999999852 233445556554
No 257
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.48 E-value=3.1e+02 Score=21.70 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCCcceEecCCCCH--HHHHHHhccCCceEEecc
Q 026166 111 YVRKCCEASLKRLDVDYIDLYYQHRVDT--SVSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQME 186 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 186 (242)
.....+...++..+... +-+.+.-.+. ........+.++.|++.|- .+.+.+|.. ..+..+.. .+++.+-+.
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~-l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR-LPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh-CCCCeEEEC
Confidence 34456777777776642 2333333331 1233445688999999996 345554432 22333332 346666555
Q ss_pred cCccCc--------ChhhhHHHHHHHhCCcEEecc
Q 026166 187 YSLWTR--------EIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 187 ~~~~~~--------~~~~~l~~~~~~~gi~v~a~s 213 (242)
.+.... ..-..++..|+..|+.+++-.
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 443321 112668899999999998643
No 258
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=27.47 E-value=4.4e+02 Score=23.36 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=52.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhC
Q 026166 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELG 206 (242)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~g 206 (242)
|-+++-.|.. ...+..+..+...+.+.-.-+...+.+.++++++. .++.++..+-|+.-... .+.+.++|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5556645532 33455555555555555444445677888887753 44555555666654322 278999999999
Q ss_pred CcEEecccCcccc
Q 026166 207 IGIVAYSPLGRGF 219 (242)
Q Consensus 207 i~v~a~spl~~G~ 219 (242)
+.++.=..++.+.
T Consensus 167 ~~vvvD~a~~~~~ 179 (382)
T TIGR02080 167 AVVVVDNTFLSPA 179 (382)
T ss_pred CEEEEECCCcccc
Confidence 9888666655443
No 259
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=27.42 E-value=1.1e+02 Score=27.69 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=35.5
Q ss_pred CcccccceecccccCC-cCCCCCCH----HHHHHHHHHHHHcCCC--EEeCccccC
Q 026166 18 GLEVSRLGFGCGGLSG-IYNKPLSH----EVGCSIIKETFNRGIT--LFDTSDVYG 66 (242)
Q Consensus 18 g~~vs~lglG~~~~~~-~~~~~~~~----~~~~~~l~~A~~~Gi~--~~DtA~~Yg 66 (242)
|+...+|.||.-.+|- .|..- +. +.+.+++...+++|++ |+||+-.-.
T Consensus 79 gf~~~~iiLGGDHLGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 133 (426)
T PRK15458 79 NFPQEALILGGDHLGPNRWQNL-PAAQAMANADDLIKSYVAAGFKKIHLDCSMSCA 133 (426)
T ss_pred CCChhhEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCCC
Confidence 4555689999988874 46543 33 4568999999999998 888877654
No 260
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.38 E-value=3.5e+02 Score=24.40 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhc--cCCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCccc
Q 026166 142 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 218 (242)
...+...++.+.++.-|....+-.-+...+.+++. ..+..++..+=|+...-.+ ..+.+.|+++|+.++.=..|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 56688888888888888888777777756555553 4677788888888776544 78999999999888988888877
Q ss_pred cCCCC
Q 026166 219 FFAGK 223 (242)
Q Consensus 219 ~L~~~ 223 (242)
.+..+
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 77665
No 261
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.35 E-value=2.3e+02 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.6
Q ss_pred cccCccCcChhhhHHHHHHHhCCcEEec
Q 026166 185 MEYSLWTREIEDDIIPLCRELGIGIVAY 212 (242)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 212 (242)
-+||+++.....++.+..++.|+.|+..
T Consensus 191 rpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 191 RPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 3899999888899999999999999864
No 262
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.25 E-value=4.3e+02 Score=23.19 Aligned_cols=86 Identities=9% Similarity=0.082 Sum_probs=54.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCC---cceEecC--CCCHHHHHHHhcc---CCceEEecccCccC
Q 026166 131 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK---IKYIGLS--EASADTIRRAHAV---HPITAVQMEYSLWT 191 (242)
Q Consensus 131 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~G~---i~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~~~ 191 (242)
+-||.+++. .+++++.+++..+.+.++ +.++=+. |.+.++++++.+. .+..++.++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 678887532 356788888888887654 2333332 4556666555544 45678888999855
Q ss_pred cCh----h---hhHHHHH--HHhCCcEEecccCc
Q 026166 192 REI----E---DDIIPLC--RELGIGIVAYSPLG 216 (242)
Q Consensus 192 ~~~----~---~~l~~~~--~~~gi~v~a~spl~ 216 (242)
... . ..+.+.. +++|+.+......+
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G 321 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGG 321 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCC
Confidence 321 1 4456666 36799998777654
No 263
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.08 E-value=4.3e+02 Score=23.12 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=54.4
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHc-C-C--cceEecC--CCCHHHHHHHhcc---CCceEEecccCcc
Q 026166 131 YYQHRVDTS-----------VSIEDTMGELKKLVEE-G-K--IKYIGLS--EASADTIRRAHAV---HPITAVQMEYSLW 190 (242)
Q Consensus 131 ~~lh~p~~~-----------~~~~~~~~~l~~l~~~-G-~--i~~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~~ 190 (242)
+-||.+++. .++++++++++++.++ + + ++++-+. |.+.++++++.+. .+..++-++||++
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~ 291 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPT 291 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 667777542 2467888888877765 3 2 3444443 5556666666543 4456777899986
Q ss_pred CcCh----h---hhHHHHHHHhCCcEEecccC
Q 026166 191 TREI----E---DDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 191 ~~~~----~---~~l~~~~~~~gi~v~a~spl 215 (242)
.... . ..+.+..+++|+.+......
T Consensus 292 ~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~ 323 (343)
T PRK14469 292 VPGLEKPSRERIERFKEILLKNGIEAEIRREK 323 (343)
T ss_pred CccCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5321 1 45777788899999887665
No 264
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=27.07 E-value=1.8e+02 Score=27.25 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHh
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~ 175 (242)
.......+++.+.|+.||+++ |-. .-.+..++...++.++|+++|+.= ++..+.+++++.-
T Consensus 57 R~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~r 117 (523)
T PLN03233 57 KEKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKER 117 (523)
T ss_pred ccchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHHH
Confidence 446677889999999999986 621 112235677889999999999852 3455677776553
No 265
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=26.98 E-value=3.9e+02 Score=23.73 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=34.5
Q ss_pred CCHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCccc
Q 026166 166 ASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
.+.+.+++++.. .+..++..+.|+.-.-. -+++.+.|+++|+.++.=..++.+
T Consensus 134 ~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~ 188 (390)
T PRK08133 134 TDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188 (390)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 467777777643 44555555666654322 278999999999999865554433
No 266
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=26.91 E-value=2.3e+02 Score=23.65 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 158 (242)
.......+++.+.|+.||+++=..+ . .....+...+++++|.++|++
T Consensus 47 R~~~~~~~~I~~dL~wlGl~wD~~~--~---QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 47 KEEEEYVDSIKEDVKWLGIKPYKVT--Y---ASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred ccchHHHHHHHHHHHHcCCCCCCce--e---cccCHHHHHHHHHHHHHcCCe
Confidence 4566788899999999999752211 1 123456677899999999975
No 267
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.65 E-value=3e+02 Score=25.96 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 138 TSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 138 ~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
...+.+++.+.+.+.+++.+|+.||+-.+...++..+++...+.++-++-........-..++..-..|.-+..-.|+
T Consensus 408 ~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 408 DLIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred CccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 345678899999999999999999999999999988887755543333222221111134555555556655555554
No 268
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.58 E-value=78 Score=27.17 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=14.3
Q ss_pred hhHHHHHHHhCCcEE
Q 026166 196 DDIIPLCRELGIGIV 210 (242)
Q Consensus 196 ~~l~~~~~~~gi~v~ 210 (242)
.+++++|+++||.||
T Consensus 75 ~elv~yA~~rgI~vi 89 (303)
T cd02742 75 KDIIEYAAARGIEVI 89 (303)
T ss_pred HHHHHHHHHcCCEEE
Confidence 889999999999998
No 269
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=26.52 E-value=1.3e+02 Score=27.62 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHH
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRR 173 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~ 173 (242)
.+.+...+.+.+.|++||+++ |-+ .......+..-+++++|+++|++ +.+.+ +.++++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~ 106 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELEL 106 (445)
T ss_pred cchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHH
Confidence 456788899999999999974 742 21222344567889999999996 44443 3455543
No 270
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.33 E-value=2.9e+02 Score=26.93 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCcceEecCCCCHHHHHHHhccCCceEEec
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (242)
..+.+++-++.....-.....-+++|+..+... .+.+++|-+..++ +.+.+|.+++.....+..+... |.++
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR----Cq~f 178 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR----CLQF 178 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH----HHhc
Confidence 355566555544333223445788888776432 3567777777777 8999999999776666666543 3334
Q ss_pred ccCccCcCh-hhhHHHHHHHhCCcE
Q 026166 186 EYSLWTREI-EDDIIPLCRELGIGI 209 (242)
Q Consensus 186 ~~~~~~~~~-~~~l~~~~~~~gi~v 209 (242)
.|..+.... ..-+...|.+.|+.+
T Consensus 179 ~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 179 NLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred ccCCCChHHHHHHHHHHHHHcCCCC
Confidence 444444321 123334455556543
No 271
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.30 E-value=49 Score=33.79 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCCcceE-ecCC-C--CHHHHHHHhccCCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCc
Q 026166 142 IEDTMGELKKLVEEGKIKYI-GLSE-A--SADTIRRAHAVHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~i-GvS~-~--~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~ 216 (242)
-..++++|.++++.|+|..| |=-. - =....+-++.. .|.++.|.+.+.... +..+.+|++++++.-++-+|-
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LD 675 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST---ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILD 675 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehH
Confidence 34689999999999998643 3211 0 01223333332 466778888876533 789999999999999998886
No 272
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=26.12 E-value=5.4e+02 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++-.++.+.-.+.|+..|....
T Consensus 21 s~e~K~~ia~~L~~~GV~~IEvG~ 44 (494)
T TIGR00973 21 TVEEKLQIALALERLGVDIIEAGF 44 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 778888999998899999999653
No 273
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=26.11 E-value=1.3e+02 Score=27.33 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred CcccccceecccccCC-cCCCCCCH----HHHHHHHHHHHHcCCC--EEeCccccC
Q 026166 18 GLEVSRLGFGCGGLSG-IYNKPLSH----EVGCSIIKETFNRGIT--LFDTSDVYG 66 (242)
Q Consensus 18 g~~vs~lglG~~~~~~-~~~~~~~~----~~~~~~l~~A~~~Gi~--~~DtA~~Yg 66 (242)
|+...++.||.-.+|- .|... +. +.+.+++...+++|++ |+||+-.-.
T Consensus 76 gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 130 (421)
T PRK15052 76 GFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMSCA 130 (421)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc
Confidence 4555689999988874 46543 33 3568999999999999 788876543
No 274
>PRK03995 hypothetical protein; Provisional
Probab=25.79 E-value=4e+02 Score=22.62 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred ccccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc-CCCCCEEEEeecCcccC
Q 026166 20 EVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ-LPRDKIQLATKFGCFML 98 (242)
Q Consensus 20 ~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~-~~R~~l~I~tK~~~~~~ 98 (242)
..+.+|||.... +.+..+.|++.++.+=...+.|.-+..++.++.+++.+ ..+-+..+.-+=+
T Consensus 181 ~~~~iGiGGgHY------------apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~---- 244 (267)
T PRK03995 181 FKPAIGIGGGHY------------APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKG---- 244 (267)
T ss_pred CCEEEEECCCCc------------cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCC----
Confidence 356677776443 24566677777777777777776433567778888775 2333333332211
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHcCCCc
Q 026166 99 DGVSIGVKGSPEYVRKCCEASLKRLDVDY 127 (242)
Q Consensus 99 ~~~~~~~~~~~~~i~~~l~~sL~~L~~d~ 127 (242)
-....++.+.+.|+.+|++.
T Consensus 245 ---------~k~~~r~~i~~~le~~gi~v 264 (267)
T PRK03995 245 ---------VKSEDRERIIEFLEELGIEV 264 (267)
T ss_pred ---------CCHHHHHHHHHHHHHCCCeE
Confidence 23456778888999998764
No 275
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=25.78 E-value=1.3e+02 Score=27.20 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=35.0
Q ss_pred CcccccceecccccCC-cCCCCCCH----HHHHHHHHHHHHcCCC--EEeCccccC
Q 026166 18 GLEVSRLGFGCGGLSG-IYNKPLSH----EVGCSIIKETFNRGIT--LFDTSDVYG 66 (242)
Q Consensus 18 g~~vs~lglG~~~~~~-~~~~~~~~----~~~~~~l~~A~~~Gi~--~~DtA~~Yg 66 (242)
|+...++.||.-.+|- .|..- +. +.+.+++...+++|++ |+||+-.-.
T Consensus 75 gf~~~~iiLggDHlGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca 129 (420)
T TIGR02810 75 GFPRDRLILGGDHLGPNPWQHL-PADEAMAKAAALVDAYVEAGFTKIHLDASMGCA 129 (420)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCcc
Confidence 4555689999988874 36542 23 4568999999999999 788876543
No 276
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=25.77 E-value=5.2e+02 Score=23.66 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=56.5
Q ss_pred CccccCCCChhHHHHHHHHhc----CC-CCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH-HcCCCcccEEEec
Q 026166 61 TSDVYGVDHDNEIMVGKALKQ----LP-RDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK-RLDVDYIDLYYQH 134 (242)
Q Consensus 61 tA~~Yg~~g~~e~~lg~~l~~----~~-R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~-~L~~d~iDl~~lh 134 (242)
..-.|| .|+-|-++|++ .+ .+=++|.|-.....- .-+.+.+-+.+++-++ ...--.+.++.+|
T Consensus 64 ~d~VfG----G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI-------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 64 DSAVFG----GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII-------GDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred CceEEC----cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh-------ccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 345788 46666666665 32 233566665533221 1233444333333221 1110137889999
Q ss_pred cCCCCCCH----HHHHHHHHH-HHH----cCCcceEecCC--CCHHHHHHHhccCCceEEec
Q 026166 135 RVDTSVSI----EDTMGELKK-LVE----EGKIKYIGLSE--ASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 135 ~p~~~~~~----~~~~~~l~~-l~~----~G~i~~iGvS~--~~~~~l~~~~~~~~~~~~q~ 185 (242)
.|+..... +.+++++-+ +.. +++|.-||-.+ .+.+.++++++...+.++.+
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 88776442 233333322 222 46688886433 33456666666655555533
No 277
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.72 E-value=1.6e+02 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEec
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQH 134 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh 134 (242)
+.+.+.+.++..+ .|+.++|.++.+.
T Consensus 206 t~e~~~~~l~~~~-~l~~~~is~y~L~ 231 (430)
T PRK08208 206 THASWMESLDQAL-VYRPEELFLYPLY 231 (430)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEEcccc
Confidence 4555555555444 3555555555543
No 278
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.59 E-value=3.7e+02 Score=21.86 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFG 94 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~ 94 (242)
+.+++.++.+..++.|++.+..+-... ...+.+...-++.++--+-.-|++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~ 76 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLN 76 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccC
Confidence 789999999999999999999874333 3677776665545543344555553
No 279
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.39 E-value=5.5e+02 Score=23.79 Aligned_cols=114 Identities=9% Similarity=0.063 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
+.+-....++.|.+.|+..|=..++-..-...+..+..+-+....-++.|+-... +.++.+++.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a~~- 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLVKE- 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHHHH-
Confidence 4566777899999999987665555443122344444332211111122222221 12466777776665
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCH
Q 026166 120 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASA 168 (242)
Q Consensus 120 L~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~ 168 (242)
+..+|. |.+.|-..-......++.+.+..+++...+ -||+-.|+.
T Consensus 172 l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 172 LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 456786 445554443344456666777777665433 477766553
No 280
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=25.37 E-value=1.6e+02 Score=25.35 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCC----CCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEE
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDT----SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAV 183 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~----~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~ 183 (242)
.+.+++.+.+-+++.++|++=++..-.-+. ......++++|++..+++.-. + ++..+-..... .. +-
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~~g--~~ 202 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALEAG--VP 202 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHHCC--CC
Confidence 567889999999999988543333322222 112334788888888866543 2 22222211111 12 12
Q ss_pred ecccCccCcChhhhHHHHHHHhCCcEEe
Q 026166 184 QMEYSLWTREIEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 184 q~~~~~~~~~~~~~l~~~~~~~gi~v~a 211 (242)
-+++.+-.....+.+.+.|+++|+.+..
T Consensus 203 fvN~tP~~~a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 203 FVNGTPSNIADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp EEE-SSSTTTTSHHHHHHHHHHTEEEEE
T ss_pred eEeccCccccCCHHHHHHHHHcCCCeec
Confidence 2333333332236889999999988763
No 281
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=25.35 E-value=2.5e+02 Score=24.72 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=44.4
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ 81 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~ 81 (242)
+.+|.+|..++.. ..+..-+.+++.+.++.+-+.|+..+-+--.||-++.+++.+.+.++.
T Consensus 114 ~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 178 (353)
T PRK05904 114 VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNF 178 (353)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHH
Confidence 6778888766542 234444788999999999999987555556788667888887777664
No 282
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.34 E-value=1.6e+02 Score=24.73 Aligned_cols=86 Identities=12% Similarity=-0.000 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
....+.++.|-+.|++.+..+..+- ..++...-++++......+.+.+-++...+ ......+++...+.+++.|+
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti--~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTI--DLPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS-----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCce--eCCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHH
Confidence 3457788888899999999888776 356667777777655666888888885431 12223446667777777777
Q ss_pred HcCCCcccEEEeccC
Q 026166 122 RLDVDYIDLYYQHRV 136 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p 136 (242)
. | .|.+++..-
T Consensus 159 A-G---A~~ViiEar 169 (244)
T PF02679_consen 159 A-G---ADKVIIEAR 169 (244)
T ss_dssp H-T---ECEEEE--T
T ss_pred C-C---CCEEEEeee
Confidence 6 5 466777655
No 283
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.27 E-value=4.3e+02 Score=25.30 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccE-----EEeccCCCCCCHHHHHHHHHHHHHcCCc-------ceEecCCCCHHHHHHHhcc---
Q 026166 113 RKCCEASLKRLDVDYIDL-----YYQHRVDTSVSIEDTMGELKKLVEEGKI-------KYIGLSEASADTIRRAHAV--- 177 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl-----~~lh~p~~~~~~~~~~~~l~~l~~~G~i-------~~iGvS~~~~~~l~~~~~~--- 177 (242)
...+-..|.++|++.|++ |-.-.+....+.-+.++.+.++..+-++ ..+|.+++.-+.++..++.
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~ 108 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVK 108 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHh
Q ss_pred CCceEEecccCccCcChhhhHHHHHHHhCCcE---Eec--cc
Q 026166 178 HPITAVQMEYSLWTREIEDDIIPLCRELGIGI---VAY--SP 214 (242)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v---~a~--sp 214 (242)
..++++.+-..+.+.+.-...+++++++|..+ ++| +|
T Consensus 109 ~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p 150 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSP 150 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCC
No 284
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=25.17 E-value=4.2e+02 Score=23.72 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhcc-CCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCcccc
Q 026166 165 EASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 165 ~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
..+.+.+++++.. .+..++..+.|+.-.-.+ +++.++|+++|+.++.=..++.+.
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~ 198 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPL 198 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 3467777777643 455566667777654322 789999999999998555554443
No 285
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.05 E-value=4.8e+02 Score=22.99 Aligned_cols=109 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCcc-cEEEeccCCC-----------CCCHHHHHHHHHH-HHHcCC---cceEecC--CCCHHH
Q 026166 109 PEYVRKCCEASLKRLDVDYI-DLYYQHRVDT-----------SVSIEDTMGELKK-LVEEGK---IKYIGLS--EASADT 170 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~i-Dl~~lh~p~~-----------~~~~~~~~~~l~~-l~~~G~---i~~iGvS--~~~~~~ 170 (242)
+..+++-.+.-+++|+.-.+ ..+-||.+++ ..+++++++++.+ +.+.|+ ++++=+. |.+.++
T Consensus 193 ~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~ 272 (345)
T PRK14457 193 PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEH 272 (345)
T ss_pred hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHH
Q ss_pred HHHHhcc---CCceEEecccCccCcC--------hhhhHHHHHHHhCCcEEecccCcc
Q 026166 171 IRRAHAV---HPITAVQMEYSLWTRE--------IEDDIIPLCRELGIGIVAYSPLGR 217 (242)
Q Consensus 171 l~~~~~~---~~~~~~q~~~~~~~~~--------~~~~l~~~~~~~gi~v~a~spl~~ 217 (242)
++++.+. .+..++-++||++... .-..+.+..+++|+.+......+.
T Consensus 273 a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 273 AEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
No 286
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.05 E-value=1.6e+02 Score=29.51 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCc--ccEEEeccCCCCCC---HHHHHHHHHHHHHcCCcceEecCCCCHHHHHHH
Q 026166 115 CCEASLKRLDVDY--IDLYYQHRVDTSVS---IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 174 (242)
Q Consensus 115 ~l~~sL~~L~~d~--iDl~~lh~p~~~~~---~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~ 174 (242)
++.-+|..+-..+ ++++++.-|....+ .+.+++.|+.+... ++.|||-+|..+..+.+
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~~ 889 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKERA 889 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHhC
Confidence 3445555555555 99999999987665 45678888888888 88999999986665444
No 287
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=25.01 E-value=2.1e+02 Score=25.10 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=35.2
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ 81 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~ 81 (242)
+.++.+|..++.. ..+..-+.+++.+.++.+.+.|+..+-.--.||-++.+++.+-+.++.
T Consensus 111 v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 111 INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHH
Confidence 4566666654432 123333667777777777777876444444666555666665555543
No 288
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.99 E-value=5.6e+02 Score=25.22 Aligned_cols=145 Identities=16% Similarity=0.209 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLK 121 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~ 121 (242)
+-+.+++++|-++|++.+- .|. |..-...-+ ..-++-+++-|....- ..+-.|.+ +-+..+
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs-----eqD~~sMHR-qKADEaY~iGk~l~PV---------~AYL~ide-ii~iak 103 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS-----EQDRLSMHR-QKADEAYLIGKGLPPV---------GAYLAIDE-IISIAK 103 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe-----ccchhhhhh-hccccceecccCCCch---------hhhhhHHH-HHHHHH
Confidence 5578999999999999885 775 333333333 4567888888873221 01112222 222333
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHh--------cc-CCceEEecccCccCc
Q 026166 122 RLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH--------AV-HPITAVQMEYSLWTR 192 (242)
Q Consensus 122 ~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~--------~~-~~~~~~q~~~~~~~~ 192 (242)
+-+ +|+ +| |... -+.|--+.-..+.+.| |++||=|. +.++.+- .. ....++--.=.++..
T Consensus 104 ~~~---vda--vH-PGYG-FLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt 172 (1176)
T KOG0369|consen 104 KHN---VDA--VH-PGYG-FLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVPVVPGTPGPITT 172 (1176)
T ss_pred HcC---CCe--ec-CCcc-ccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCCccCCCCCCccc
Confidence 334 443 22 3322 1223334444444555 68899764 3333221 11 111111111122222
Q ss_pred ChhhhHHHHHHHhCCcEEecccCccc
Q 026166 193 EIEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 193 ~~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
.++.++||+++|..||--..+++|
T Consensus 173 --~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 173 --VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred --HHHHHHHHHhcCCcEEEeecccCC
Confidence 378999999999999988888766
No 289
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=24.99 E-value=1.3e+02 Score=26.34 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred ccCccC----cChhhhHHHHHHHhCCcEEecccCc
Q 026166 186 EYSLWT----REIEDDIIPLCRELGIGIVAYSPLG 216 (242)
Q Consensus 186 ~~~~~~----~~~~~~l~~~~~~~gi~v~a~spl~ 216 (242)
.||+.. ++...++.+.|+++||.+-.|-...
T Consensus 127 ~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 127 DYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred cccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 455543 3344889999999999996665443
No 290
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=24.88 E-value=84 Score=23.02 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHH
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIR 172 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~ 172 (242)
|--...-||.+ -..-+..|..... =+.+++++++|| +++|+|....++..
T Consensus 60 LamAIallG~~--~C~Tvs~pg~~~~----eeeI~~~v~~GK-~AFGft~~hie~vv 109 (117)
T PF10941_consen 60 LAMAIALLGYG--KCATVSMPGKIPS----EEEIRKEVAEGK-KAFGFTAQHIEQVV 109 (117)
T ss_pred HHHHHHHhCcc--ceeEeecCCCCCC----HHHHHHHHHcCC-eeeeccHHHHHHHH
Confidence 44445556643 3444555543222 245677888999 78998876655543
No 291
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=24.86 E-value=2.4e+02 Score=22.36 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCCHHHHHHHhccCCceEEecccC
Q 026166 121 KRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 188 (242)
Q Consensus 121 ~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 188 (242)
.++|.|++-+.+-.......+ .+....|.++... .+..+||- |.+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467877766543332222221 3344444444433 36778885 677788888887778889998543
No 292
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=24.81 E-value=36 Score=31.25 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCcceEecCCCCHHHHHHHhccCC-ceEEecccCccCcChhhhHHHHHHHhCCc
Q 026166 156 GKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRELGIG 208 (242)
Q Consensus 156 G~i~~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 208 (242)
+.++.+|+..++.+.+.++..... -+..+.+..++....+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 567889999999888888876522 22333333444333335677777666664
No 293
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=24.65 E-value=2.7e+02 Score=23.22 Aligned_cols=46 Identities=26% Similarity=0.136 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 158 (242)
..+...+.+.+.|+.||++ .|- .+-.....+...+++++|.++|++
T Consensus 50 ~~~~~~~~i~~dL~wLGl~-~d~----~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 50 PDPEAYDMIPEDLEWLGVK-WDE----VVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred chHHHHHHHHHHHHHcCCC-CCC----ccchhccHHHHHHHHHHHHHcCCc
Confidence 3456666799999999995 462 222334567788999999999984
No 294
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=24.60 E-value=66 Score=23.85 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=21.1
Q ss_pred CCcccccceecccccCCcCCCCCCHHHHHHHHHHHHH
Q 026166 17 QGLEVSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFN 53 (242)
Q Consensus 17 ~g~~vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~ 53 (242)
.-+.+|+||-|..++ +.+++.++++..++
T Consensus 110 ~sva~P~iG~G~~G~--------~w~~v~~ii~~~~~ 138 (140)
T cd02901 110 KSVAMPRIGCGLGGL--------DWEEVEPLIEKALA 138 (140)
T ss_pred CEEeeCCCCCcCCCC--------CHHHHHHHHHHHhc
Confidence 345678887776543 77889999988775
No 295
>PRK10551 phage resistance protein; Provisional
Probab=24.50 E-value=5.3e+02 Score=24.02 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcce---EecCCCCHHHHHHHhccCCceEEec
Q 026166 110 EYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKY---IGLSEASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 110 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~---iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (242)
+.+...+.+.++.++.+.. -+.+.-.+.. ....+..+.++.|++.|---+ +|....+...+.. .+++.+-+
T Consensus 364 ~~f~~~l~~~l~~~~~~~~-~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtg~ssl~~L~~----l~vD~lKI 438 (518)
T PRK10551 364 DSFKADVQRLLASLPADHF-QIVLEITERDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSALIYLER----FTLDYLKI 438 (518)
T ss_pred chHHHHHHHHHHhCCCCcc-eEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHh----CCCCEEEE
Confidence 3455668888888887543 2333333321 122446688899999998322 2333333333332 34555555
Q ss_pred ccCccCc--------ChhhhHHHHHHHhCCcEEecc
Q 026166 186 EYSLWTR--------EIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 186 ~~~~~~~--------~~~~~l~~~~~~~gi~v~a~s 213 (242)
.-+.... ..-+.+++.|++.|+.+++=+
T Consensus 439 D~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 439 DRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred CHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4333321 112568999999999988644
No 296
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=24.46 E-value=3.2e+02 Score=20.79 Aligned_cols=131 Identities=12% Similarity=0.194 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEAS 119 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~s 119 (242)
.++.....++.|++.|.+.|.+--..- ++..+|...- . -.+++.
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~t-----------------kDg~~vv~Hd---i----------------~tL~e~ 54 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQLT-----------------KDGVLVVIHD---I----------------PTLEEV 54 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeEc-----------------CCCCEEEEcC---C----------------CCHHHH
Confidence 457788999999999999887443222 2222222221 1 124555
Q ss_pred HHHcCCCcccE-EEeccCCCCCCHHHHHHHHH-HHHHcCCcceEecCCCCHHHHHHHhccCC-c----------------
Q 026166 120 LKRLDVDYIDL-YYQHRVDTSVSIEDTMGELK-KLVEEGKIKYIGLSEASADTIRRAHAVHP-I---------------- 180 (242)
Q Consensus 120 L~~L~~d~iDl-~~lh~p~~~~~~~~~~~~l~-~l~~~G~i~~iGvS~~~~~~l~~~~~~~~-~---------------- 180 (242)
|+.+.- ++ +++.--++.. ..+.++.+. .+++.|.-+.+=++.|+++.+..+.+..| +
T Consensus 55 l~~~~~---~~~i~leiK~~~~-~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 130 (189)
T cd08556 55 LELVKG---GVGLNIELKEPTR-YPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLA 130 (189)
T ss_pred HHhccc---CcEEEEEECCCCC-chhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhh
Confidence 555543 22 3333222111 223343333 33444566777788888877777765421 1
Q ss_pred --------eEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 181 --------TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 181 --------~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
+.+...+.. ....+++.|+++|+.+.+|..
T Consensus 131 ~~~~~~~~~~v~~~~~~----~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 131 ELARALGADAVNPHYKL----LTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred hHHHhcCCeEEccChhh----CCHHHHHHHHHcCCEEEEEcC
Confidence 111111111 236899999999999999964
No 297
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=24.46 E-value=2.1e+02 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 158 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i 158 (242)
.+.....+++.++|+.||+++ |=. .--....+-..++.++|+++|+.
T Consensus 45 R~~~e~~~~I~~~L~WlGl~w-De~----y~QSeR~~~Y~~~a~~Li~~G~A 91 (433)
T PRK12410 45 RNIEGKDKEILEILNLFGISW-DKL----VYQSENLKFHRQMAEKLLSEKKA 91 (433)
T ss_pred cCChHHHHHHHHHHHHcCCCC-CCC----eehhccHHHHHHHHHHHHHcCCe
Confidence 455677789999999999987 621 01123455567889999999986
No 298
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.44 E-value=3.1e+02 Score=23.19 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCC--CC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEE
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 183 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~--~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~ 183 (242)
++.+... .+-+.|..+|+++|++-.+-.|. +. .+.+++...+.. ...++..++. -....++.+++.. .+.+
T Consensus 17 ~s~e~K~-~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i 90 (274)
T cd07938 17 IPTEDKI-ELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEV 90 (274)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEE
Confidence 4444444 46667999999999986443332 11 233444444443 2346666665 4667788888753 2222
Q ss_pred eccc---------CccCcC-----hhhhHHHHHHHhCCcEE
Q 026166 184 QMEY---------SLWTRE-----IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 184 q~~~---------~~~~~~-----~~~~l~~~~~~~gi~v~ 210 (242)
.+.. |+-... .-.+.+++++++|+.+.
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 2222 221110 11567999999999885
No 299
>PRK06256 biotin synthase; Validated
Probab=24.32 E-value=4.6e+02 Score=22.57 Aligned_cols=120 Identities=20% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-eCccccCCCChhHHHHHHHHhcCCC-CCEEEEeecCcccCCCcccCCCCCHHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLF-DTSDVYGVDHDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~~g~~e~~lg~~l~~~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l 116 (242)
.+.+++.+.++.+.+.|++.| -.+..++.....-..+-+.++...+ -.+.+.+-.+. .+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 478999999999999998633 2233333211111233344443211 22333222221 233333
Q ss_pred HHHHHHcCCCcccEEEecc-------CCCCCCHHHHHHHHHHHHHcCCcce----EecCCCCHHHHHHHhc
Q 026166 117 EASLKRLDVDYIDLYYQHR-------VDTSVSIEDTMGELKKLVEEGKIKY----IGLSEASADTIRRAHA 176 (242)
Q Consensus 117 ~~sL~~L~~d~iDl~~lh~-------p~~~~~~~~~~~~l~~l~~~G~i~~----iGvS~~~~~~l~~~~~ 176 (242)
+.|+..|++.+-+- +.. .......++.+++++.+++.|.--. +|+ +.+.+++.+.+.
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 34667787654331 111 1122346788899999999986322 344 556665555443
No 300
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=24.23 E-value=4e+02 Score=21.86 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred cCCcceEecCCCCHHHHHHHhccCC-ceEEe---------------c---ccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 155 EGKIKYIGLSEASADTIRRAHAVHP-ITAVQ---------------M---EYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 155 ~G~i~~iGvS~~~~~~l~~~~~~~~-~~~~q---------------~---~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
.+..+.+=+++|+++.+..+.+..+ +.... + .+++.......++++.++++|+.|.+|..
T Consensus 139 ~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 139 AGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 3444567889999988888766421 11000 0 01111112237899999999999999964
No 301
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.21 E-value=2.2e+02 Score=21.31 Aligned_cols=54 Identities=24% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
.+.+.+...+++..+.- -+.-.+=..|...+.+.+.+.|+.+++.|- ..||+..
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 45566666665544432 233233345667789999999999999994 4577755
No 302
>PRK05939 hypothetical protein; Provisional
Probab=24.00 E-value=4.9e+02 Score=23.23 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCHHHHHHHhcc-CCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCcccc
Q 026166 166 ASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
.+.+.++.++.. .+..++..+.|+.-.-.+ +++.+.|+++|+.++.=..++.+.
T Consensus 119 ~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 119 TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 356677776643 344455555565433222 678899999998888666555443
No 303
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=23.96 E-value=1.1e+02 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=26.3
Q ss_pred eecccccCC---------------cCCCCCCHHHHHHHHHHHHHcCCCEEeCcccc
Q 026166 25 GFGCGGLSG---------------IYNKPLSHEVGCSIIKETFNRGITLFDTSDVY 65 (242)
Q Consensus 25 glG~~~~~~---------------~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y 65 (242)
|||.|++|. .|... |+....+.++.|.+.|+. |-.-+.|
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGfHAG-Dp~~M~rtV~lA~e~gV~-IGAHPgy 66 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGFHAG-DPLTMRRTVRLAKENGVA-IGAHPGY 66 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhcccCC-CHHHHHHHHHHHHHcCCe-eccCCCC
Confidence 577787774 24444 778888889999998884 3333344
No 304
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.87 E-value=4.4e+02 Score=22.12 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++..++....-+.||..|+...
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec
Confidence 788889999998899999999764
No 305
>PRK15108 biotin synthase; Provisional
Probab=23.81 E-value=5e+02 Score=22.76 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcccc-CCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVY-GVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~ 117 (242)
.+.+++.+....+.+.|++.|-..... +.....-+.+.+.++......+.++.-.+. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 478899999999999999988543221 110112234555554322222323222221 223332
Q ss_pred HHHHHcCCCcccEEEeccC------CCCCCHHHHHHHHHHHHHcCCcc
Q 026166 118 ASLKRLDVDYIDLYYQHRV------DTSVSIEDTMGELKKLVEEGKIK 159 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p------~~~~~~~~~~~~l~~l~~~G~i~ 159 (242)
+-|+..|+|++.+.+=-.| -.....++.++.++.+++.|.--
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 3355667765433211111 11235788999999999999743
No 306
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=23.80 E-value=4.8e+02 Score=25.04 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHh
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 175 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~ 175 (242)
........+++.+.|+.||+++ |--..+ ....++...+++++|+++|+. + ++..+.+++.+..
T Consensus 97 ~R~~~e~~d~IleDL~WLGl~w-De~~~~---QSdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~r 159 (601)
T PTZ00402 97 SKEKEHFEQAILDDLATLGVSW-DVGPTY---SSDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKCR 159 (601)
T ss_pred cccCHHHHHHHHHHHHHCCCCC-CCceee---ccccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHHH
Confidence 3455778889999999999975 310111 123467788999999999984 4 7777778876653
No 307
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.79 E-value=2.6e+02 Score=24.72 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=47.3
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---CCCCCEE
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPRDKIQ 88 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~R~~l~ 88 (242)
+.++.+|..++.. ..+...+.+++.+.++.+-+.|+..+-+--.||-++.++..+.+.++. ...+.+.
T Consensus 119 ~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~ 193 (375)
T PRK05628 119 FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVS 193 (375)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 5677787765542 234445788999999999999998565556788667888887776654 3445443
No 308
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=23.79 E-value=5.6e+02 Score=23.31 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=69.0
Q ss_pred ccccCCCChhHHHHHHHHhc----CCC-CCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccC
Q 026166 62 SDVYGVDHDNEIMVGKALKQ----LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV 136 (242)
Q Consensus 62 A~~Yg~~g~~e~~lg~~l~~----~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 136 (242)
.-.|| .+.-|.++|++ .++ +=|+|.|-..... .-+.++.-+++.-++++ +.++.+|.|
T Consensus 96 d~V~G----g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~ 158 (443)
T TIGR01862 96 DIVFG----GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCP 158 (443)
T ss_pred ceeeC----cHHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecC
Confidence 34677 35566666654 444 4556655543221 11223333333333443 689999988
Q ss_pred CCCCC-----HHHHHHH-HHHHH--------HcCCcceEecCCC--CHHHHHHHhccCCceEEe-c--------------
Q 026166 137 DTSVS-----IEDTMGE-LKKLV--------EEGKIKYIGLSEA--SADTIRRAHAVHPITAVQ-M-------------- 185 (242)
Q Consensus 137 ~~~~~-----~~~~~~~-l~~l~--------~~G~i~~iGvS~~--~~~~l~~~~~~~~~~~~q-~-------------- 185 (242)
+.... ...+.++ ++.+. +++.|.-||-.++ +.+.+.++++...+.++- +
T Consensus 159 gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~ 238 (443)
T TIGR01862 159 GFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHK 238 (443)
T ss_pred CccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccc
Confidence 75431 2233333 33443 2467888885553 344677777654443331 1
Q ss_pred -ccCcc-CcChhhhHHHHHH-HhCCcEEecccC
Q 026166 186 -EYSLW-TREIEDDIIPLCR-ELGIGIVAYSPL 215 (242)
Q Consensus 186 -~~~~~-~~~~~~~l~~~~~-~~gi~v~a~spl 215 (242)
.+|+. .......+.++.+ +.|+.++...|+
T Consensus 239 A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~ 271 (443)
T TIGR01862 239 AKLNLVHCARSANYIANELEERYGIPWMKIDFF 271 (443)
T ss_pred CCEEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 22222 1111123445555 559999887663
No 309
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=23.76 E-value=2.5e+02 Score=20.13 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=28.8
Q ss_pred cCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 163 LSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 163 vS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
.+..+.++++.++... ++++-+--.--......++.++++++||++..+..
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 3445666666666542 34333311111111136788999999999887754
No 310
>PRK02227 hypothetical protein; Provisional
Probab=23.62 E-value=4.4e+02 Score=22.02 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc-ccCC-CChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHH
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD-VYGV-DHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCE 117 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~-~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~ 117 (242)
+.+|+ ..|++.|..+||.=+ .-|. +.....++.+..+. -+...-|+..++-.. +.+..+..++.
T Consensus 9 ~~eEA----~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~p---------~~p~~~~~aa~ 74 (238)
T PRK02227 9 NLEEA----LEALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDVP---------YKPGTISLAAL 74 (238)
T ss_pred CHHHH----HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCCC---------CCchHHHHHHH
Confidence 55555 467889999999643 2221 24567777776653 333345666665433 33444444332
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHH----HHHHHHHHHcCCcceEecCCC------CHHHHHHHhccCCceEEeccc
Q 026166 118 ASLKRLDVDYIDLYYQHRVDTSVSIEDT----MGELKKLVEEGKIKYIGLSEA------SADTIRRAHAVHPITAVQMEY 187 (242)
Q Consensus 118 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~----~~~l~~l~~~G~i~~iGvS~~------~~~~l~~~~~~~~~~~~q~~~ 187 (242)
.....|.||+-+=+.-..+.. ...+. +++........++-+++.+.+ ++..+..+.....|+..++.-
T Consensus 75 -~~a~~GvDyVKvGl~~~~~~~-~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT 152 (238)
T PRK02227 75 -GAAATGADYVKVGLYGGKTAE-EAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT 152 (238)
T ss_pred -HHHhhCCCEEEEcCCCCCcHH-HHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec
Confidence 234568888776555222211 11222 333344444677888888875 455666666555666666532
Q ss_pred C------ccCc---ChhhhHHHHHHHhCCcE
Q 026166 188 S------LWTR---EIEDDIIPLCRELGIGI 209 (242)
Q Consensus 188 ~------~~~~---~~~~~l~~~~~~~gi~v 209 (242)
- +++. ..-.++++.|+++|+..
T Consensus 153 a~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 153 AIKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred ccCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 1 2221 12267889999999865
No 311
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=23.62 E-value=3.5e+02 Score=21.74 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHcCCCcccEEEec-cCCCC-CCHHH----HHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcC
Q 026166 120 LKRLDVDYIDLYYQH-RVDTS-VSIED----TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE 193 (242)
Q Consensus 120 L~~L~~d~iDl~~lh-~p~~~-~~~~~----~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 193 (242)
+..-|.++||+-.-- +|... .+.++ +...++.+++..-=--+.+-++.++.++.+++. ..+++-...+. ..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGF-ED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTT-SS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccc-cc-
Confidence 344578999985332 22211 22233 344555555411112467778999999999987 33332222221 11
Q ss_pred hhhhHHHHHHHhCCcEEecccC
Q 026166 194 IEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 194 ~~~~l~~~~~~~gi~v~a~spl 215 (242)
.+++++.++++|..++++..-
T Consensus 105 -~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 -DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp -STTHHHHHHHHTSEEEEESES
T ss_pred -cchhhhhhhcCCCEEEEEecc
Confidence 378999999999999988665
No 312
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=23.60 E-value=4.9e+02 Score=24.36 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC---------C-cceEecCCCCHHHHHHH
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG---------K-IKYIGLSEASADTIRRA 174 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G---------~-i~~iGvS~~~~~~l~~~ 174 (242)
..++.+.-.+ +-+.|.++|+++|.+-+ |... .+-+++++.+.+.+ . .+-.+++....+.++.+
T Consensus 101 v~fs~eeKi~-Ia~~L~~~GVd~IEvG~---Pa~s---~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 101 GSLTPPQKLE-IARQLAKLRVDIMEVGF---PGSS---EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEeC---CCCC---HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 4466665554 66679999998888744 4322 22233444444321 1 23446666666677777
Q ss_pred hccC---CceEEec--ccCccC-------cC-----hhhhHHHHHHHhCCcEEeccc
Q 026166 175 HAVH---PITAVQM--EYSLWT-------RE-----IEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 175 ~~~~---~~~~~q~--~~~~~~-------~~-----~~~~l~~~~~~~gi~v~a~sp 214 (242)
.+.. ....+.+ .-+..+ .. .-.+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 6541 1222222 122111 11 016688999999986555555
No 313
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=23.60 E-value=5.2e+02 Score=22.92 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---CCC-CCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 39 LSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPR-DKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~R-~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
.+.++..++++.+.+.|++.|- ..|..+.-...+-+.++. .+. ..+.|+|-... +.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~---~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~l----------------L~~ 150 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIR---LTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT----------------LSR 150 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE---EECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcch----------------HHH
Confidence 5778999999999999998875 334212212223333322 211 23555553211 111
Q ss_pred HHHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC--cc--eEecCCCCHHHHHHHhcc---CC
Q 026166 115 CCEASLKRLDVDYIDLYYQHRVDT--------SVSIEDTMGELKKLVEEGK--IK--YIGLSEASADTIRRAHAV---HP 179 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~~l~~l~~~G~--i~--~iGvS~~~~~~l~~~~~~---~~ 179 (242)
.+ ..|...|++.+- +-++..++ ....+.+++.++.+++.|. |+ .+-+-.++.+++.++++. .+
T Consensus 151 ~~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~g 228 (373)
T PLN02951 151 KL-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKP 228 (373)
T ss_pred HH-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCC
Confidence 22 234445655443 23333321 1235778999999999985 22 333344666666666554 34
Q ss_pred ceEEecccCccCcCh--------hhhHHHHHHHh
Q 026166 180 ITAVQMEYSLWTREI--------EDDIIPLCREL 205 (242)
Q Consensus 180 ~~~~q~~~~~~~~~~--------~~~l~~~~~~~ 205 (242)
+.+..++|.++.... ..++++..+++
T Consensus 229 i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 229 INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred CeEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 555555555544210 14566666554
No 314
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.49 E-value=3.1e+02 Score=20.92 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=44.7
Q ss_pred cccceecccccCCcCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCC
Q 026166 21 VSRLGFGCGGLSGIYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDG 100 (242)
Q Consensus 21 vs~lglG~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~ 100 (242)
-+++||-...= ..+.++....+.+.+..++..-... .+..+++|..|-+...
T Consensus 47 ~~RlG~sVSKK--vg~~AV~RNRiKR~lRE~fR~~~~~-----------------------l~~~DiVviar~~~~~--- 98 (145)
T PRK04820 47 PPRLGLAVSRK--VDTRAVGRNRIKRVLREAMRQLLPE-----------------------LAPGDYVVVARSAAAK--- 98 (145)
T ss_pred CcEEEEEEecc--ccCcchhHHHHHHHHHHHHHHhhhc-----------------------cCCCCEEEEEeCCccc---
Confidence 35666643211 1123456777888888888632211 1223677777766543
Q ss_pred cccCCCCCHHHHHHHHHHHHHHcCC
Q 026166 101 VSIGVKGSPEYVRKCCEASLKRLDV 125 (242)
Q Consensus 101 ~~~~~~~~~~~i~~~l~~sL~~L~~ 125 (242)
.+...+.+++...|+++++
T Consensus 99 ------~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 99 ------ASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred ------CCHHHHHHHHHHHHHHhCc
Confidence 5688999999999999875
No 315
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=23.48 E-value=3.1e+02 Score=23.61 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEe----------CccccCCC-ChhHHHHHHHHhcCC-CCCEEEEeecCcccCCCcccCCCC
Q 026166 40 SHEVGCSIIKETFNRGITLFD----------TSDVYGVD-HDNEIMVGKALKQLP-RDKIQLATKFGCFMLDGVSIGVKG 107 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~~-g~~e~~lg~~l~~~~-R~~l~I~tK~~~~~~~~~~~~~~~ 107 (242)
+++...+....+.+.|+..|| +...||.. -..-..+.+.++... .-++-|+.|+-.... .
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~--------~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD--------D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc--------c
Confidence 778888888888888999999 23344421 012334444444311 112455666543321 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CCHHHHHHHhccCCceEEe
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSI--EDTMGELKKLVEEGKIKYIGLSE-ASADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~--~~~~~~l~~l~~~G~i~~iGvS~-~~~~~l~~~~~~~~~~~~q 184 (242)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+++.++++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 555677777 688999986443322 45789999998887776665554 6778888887764444444
Q ss_pred c
Q 026166 185 M 185 (242)
Q Consensus 185 ~ 185 (242)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 3
No 316
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=23.38 E-value=3e+02 Score=22.14 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHcCCcceEecCCCCHHHHHHHhccCC---ce----------------------EEecccCccC---cChhhhHHHHH
Q 026166 151 KLVEEGKIKYIGLSEASADTIRRAHAVHP---IT----------------------AVQMEYSLWT---REIEDDIIPLC 202 (242)
Q Consensus 151 ~l~~~G~i~~iGvS~~~~~~l~~~~~~~~---~~----------------------~~q~~~~~~~---~~~~~~l~~~~ 202 (242)
.+++.+....+=++.|+++.+..+.+..| .. .++..+.... .....++++.+
T Consensus 111 ~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 190 (226)
T cd08568 111 IVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRLL 190 (226)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHHH
Confidence 34445666677888888888777765421 11 0111111110 00125799999
Q ss_pred HHhCCcEEeccc
Q 026166 203 RELGIGIVAYSP 214 (242)
Q Consensus 203 ~~~gi~v~a~sp 214 (242)
+++|+.|.+|..
T Consensus 191 ~~~G~~v~~WTv 202 (226)
T cd08568 191 RKLGLKIVLWTV 202 (226)
T ss_pred HHCCCEEEEEcC
Confidence 999999999964
No 317
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.27 E-value=4.4e+02 Score=21.96 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCcccEEEec-cCCCCCCHHHHHHHHHHHHH-cCCcceEecCCCCHHHHHHHhccCC-
Q 026166 103 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQH-RVDTSVSIEDTMGELKKLVE-EGKIKYIGLSEASADTIRRAHAVHP- 179 (242)
Q Consensus 103 ~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~~~~~~~~~~l~~l~~-~G~i~~iGvS~~~~~~l~~~~~~~~- 179 (242)
....++.+...+-++. |.++|+++|++-+.- .|+ -|+.++.+.+ ...++..+++......++.+.+...
T Consensus 13 ~~~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~ 84 (268)
T cd07940 13 PGVSLTPEEKLEIARQ-LDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKP 84 (268)
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCC
Q ss_pred --ceEEecccCccCc--------------ChhhhHHHHHHHhCCcEEecccCcc
Q 026166 180 --ITAVQMEYSLWTR--------------EIEDDIIPLCRELGIGIVAYSPLGR 217 (242)
Q Consensus 180 --~~~~q~~~~~~~~--------------~~~~~l~~~~~~~gi~v~a~spl~~ 217 (242)
++.+.+-+..-+. ..-.+.+++++++|+.+.-..|...
T Consensus 85 ~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 85 AKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
No 318
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=23.21 E-value=1.4e+02 Score=25.61 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCCccc--EEE-eccCCCCCCHHHHHHHHHHHHHcCCcce
Q 026166 109 PEYVRKCCEASLKRLDVDYID--LYY-QHRVDTSVSIEDTMGELKKLVEEGKIKY 160 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iD--l~~-lh~p~~~~~~~~~~~~l~~l~~~G~i~~ 160 (242)
.+...+.+.+.+++||+.. | .+. =+.+ ...+.+++.+.+|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 4567778999999999853 4 322 2222 235678999999999999743
No 319
>COG0218 Predicted GTPase [General function prediction only]
Probab=23.19 E-value=4.1e+02 Score=21.54 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHc------CCCEEeCccccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHHHH
Q 026166 41 HEVGCSIIKETFNR------GITLFDTSDVYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRK 114 (242)
Q Consensus 41 ~~~~~~~l~~A~~~------Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (242)
.+...+++...++. .+-.+|.-..-- ..+..+=+++......=+++.||..-. ......+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~~~i~~~vv~tK~DKi-----------~~~~~~k 155 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLELGIPVIVVLTKADKL-----------KKSERNK 155 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEccccC-----------ChhHHHH
Confidence 45566777766653 445778655443 356777777776677888899998533 3566777
Q ss_pred HHHHHHHHcCCCcccE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 026166 115 CCEASLKRLDVDYIDL--YYQHRVDTSVSIEDTMGELKKLVEE 155 (242)
Q Consensus 115 ~l~~sL~~L~~d~iDl--~~lh~p~~~~~~~~~~~~l~~l~~~ 155 (242)
.+....+.|+.+..|- +.+........+++.++.+.+....
T Consensus 156 ~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 156 QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 8888888998877665 4444444445588888888876653
No 320
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=23.03 E-value=2.5e+02 Score=20.38 Aligned_cols=49 Identities=8% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCHHHHHHHhcc-CCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 166 ASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 166 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
.+.+++..+... .+++++-+--.........++.++++++||.+..+..
T Consensus 40 l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 40 ITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 455666666544 2344444432222223336788888899998887654
No 321
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=22.92 E-value=1e+02 Score=26.82 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 139 SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 139 ~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
..++++-+..|+.+.+.| +|++|+.-.....+-.-.. -+-..-.....+++++.|.+.||.|=....
T Consensus 104 a~~~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~--------~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~ 170 (313)
T COG2355 104 AEPLGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCY--------ERTGGGLTPFGKELVREMNELGIIIDLSHL 170 (313)
T ss_pred cccccccHHHHHHHHHhC-ceEEEeeeccCCcccCccC--------CCCCCCCCHHHHHHHHHHHhcCCEEEeccc
Confidence 346677788999999999 8999986322111110000 000000111237888888888888754433
No 322
>PRK15108 biotin synthase; Provisional
Probab=22.92 E-value=5.2e+02 Score=22.65 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecCC--CCHHHHHHHhccC-----
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSE--ASADTIRRAHAVH----- 178 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~~l~~l~~~G~i~~iGvS~--~~~~~l~~~~~~~----- 178 (242)
.+++.|.+.+.. ...+|+.++- ....+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888887765 5568988873 33332222 2345666777777776664 243444 6677777775531
Q ss_pred -CceEEecccCccCc--C--hhhhHHHHHHHhCCcEEecccCccc
Q 026166 179 -PITAVQMEYSLWTR--E--IEDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 179 -~~~~~q~~~~~~~~--~--~~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
.+++..--|.-+.. . .--+.++.+++.|+.+.+-..++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11111111111111 1 1156788888888876555555544
No 323
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.87 E-value=2.7e+02 Score=25.84 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=48.0
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhc---CCCCCEEE
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQ---LPRDKIQL 89 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~R~~l~I 89 (242)
+.++.+|..++.. ..+..-+.+++.+.++.|-+.|+..+-+--.||-++.+...+-+.++. ...+.+.+
T Consensus 280 v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv 355 (488)
T PRK08207 280 VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTV 355 (488)
T ss_pred CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 5577777765542 234444789999999999999997666666888767788777777664 34444443
No 324
>PRK02399 hypothetical protein; Provisional
Probab=22.82 E-value=3e+02 Score=24.93 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceE--------------ecCCCCHHHHHHHhcc
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI--------------GLSEASADTIRRAHAV 177 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~i--------------GvS~~~~~~l~~~~~~ 177 (242)
.+++...++|.-...|.+.+|.-..-. ++||+|.++|.+..+ |+-...++++..+.+.
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~GG------raME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~ 270 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTGG------RAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAART 270 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCch------HHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHc
Confidence 345555555554446999999886532 689999999998765 5556677777777654
No 325
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=22.79 E-value=1.7e+02 Score=25.74 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=61.6
Q ss_pred CCCCCEEEEeecCcccCCCcccCCCCC----HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHH-HcC
Q 026166 82 LPRDKIQLATKFGCFMLDGVSIGVKGS----PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLV-EEG 156 (242)
Q Consensus 82 ~~R~~l~I~tK~~~~~~~~~~~~~~~~----~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~-~~G 156 (242)
.+|+++-+++++.....+......+.- ..-....+-..|.+.|. ++.+|..- +.++..+..+... +.+
T Consensus 23 ~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~----~~~iHk~~---~~e~~~~~v~~~~~~~~ 95 (343)
T TIGR01305 23 KSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSI----FTAIHKHY---SVDEWKAFATNSSPDCL 95 (343)
T ss_pred CcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCC----eEEEeeCC---CHHHHHHHHHhhccccc
Confidence 467888888888743211100000000 11234456677777773 67888753 3333333333322 222
Q ss_pred C--cceEecCCCCHHHHHHHhccC-CceEEecccCccCcChhhhHHHHHHHh
Q 026166 157 K--IKYIGLSEASADTIRRAHAVH-PITAVQMEYSLWTREIEDDIIPLCREL 205 (242)
Q Consensus 157 ~--i~~iGvS~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~ 205 (242)
. .-++|++..+.+.++.+++.. .++++.+.-.--+....-+.+++.+++
T Consensus 96 ~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 96 QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 2 127777777778888888753 355555544433333335566666654
No 326
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=22.77 E-value=4.6e+02 Score=22.42 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=48.9
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecC-----CCCHHHHHHHhccC-------CceEEecccCccC
Q 026166 125 VDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLS-----EASADTIRRAHAVH-------PITAVQMEYSLWT 191 (242)
Q Consensus 125 ~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS-----~~~~~~l~~~~~~~-------~~~~~q~~~~~~~ 191 (242)
.+.-|-+++..|... ...+.++ ..|. +..+-+. ..+.+.+++.++.. .+.++-.++|+.-
T Consensus 90 ~~~~~~vlv~~P~y~----~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG 162 (363)
T PF00155_consen 90 INPGDTVLVPDPCYP----SYIEAAR---LLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTG 162 (363)
T ss_dssp SSTTSEEEEEESSST----HHHHHHH---HTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTT
T ss_pred ccccccceecCCccc----ccccccc---ccCceeeeccccccccccccccccccccccccccccccceeeecccccccc
Confidence 344577888777543 1222232 2333 4444443 56788888877652 2334444555544
Q ss_pred cCh----hhhHHHHHHHhCCcEEe---cccCccc
Q 026166 192 REI----EDDIIPLCRELGIGIVA---YSPLGRG 218 (242)
Q Consensus 192 ~~~----~~~l~~~~~~~gi~v~a---~spl~~G 218 (242)
... -.+++++|+++++-++. |+.+..+
T Consensus 163 ~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 163 SVLSLEELRELAELAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred cccccccccchhhhhcccccceeeeeceeccccC
Confidence 321 26688889999999984 4444433
No 327
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=22.66 E-value=2.4e+02 Score=21.19 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCEEeCcc--------ccCCCChhHHHHHHHHhcCCCCCEEEEeecCccc-CCCcccCCCCCHHHHHHHH
Q 026166 46 SIIKETFNRGITLFDTSD--------VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFM-LDGVSIGVKGSPEYVRKCC 116 (242)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~--------~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~-~~~~~~~~~~~~~~i~~~l 116 (242)
+....|-..++-++|++. .|+ +..+..+-+..+ ..+-++++........ .+.....-...+..+.+.+
T Consensus 65 ~~~~~~~~~~~vi~Dr~~~d~~aY~~~~~--~~~~~~l~~~~~-~~~yd~v~~l~~~~~~~~D~~R~~~~~~r~~~~~~~ 141 (163)
T PF13521_consen 65 EAEASAKSSDVVICDRGPLDTLAYSEFYF--GDYPEELEREAR-LSRYDLVFLLPPDPPWEQDGVRPEDPEERERIDELL 141 (163)
T ss_dssp HHHHHHH-SSEEEESS-HHHHHHHHHHHH--S---HHHHHHHH-HS--SEEEEEE----------------SHHHHHHHH
T ss_pred HHHHhhcCCCcEEEeCChHHHHHHHHHhc--CcchHHHHHHHH-hCCCCEEEEeCCccccCCCCCCCCCHHHHHHHHHHH
Confidence 333444467888999875 233 223444544444 3556666666654433 2211222224567889999
Q ss_pred HHHHHHcCCCcccE
Q 026166 117 EASLKRLDVDYIDL 130 (242)
Q Consensus 117 ~~sL~~L~~d~iDl 130 (242)
.+.|+++|..++.+
T Consensus 142 ~~~l~~~~~~~~~v 155 (163)
T PF13521_consen 142 KELLERHGIPYIIV 155 (163)
T ss_dssp HHHHHGGG---EEE
T ss_pred HHHHHHCCCeEEEe
Confidence 99999999887765
No 328
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.65 E-value=2.2e+02 Score=21.25 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 026166 107 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 164 (242)
Q Consensus 107 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS 164 (242)
.+.+.+...++..+..- -|...+=..|...+.+.+.+.|+.+++.|- ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 35566666555554432 233333356677889999999999999984 446654
No 329
>COG1647 Esterase/lipase [General function prediction only]
Probab=22.55 E-value=3.2e+02 Score=22.74 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCC--cceEecCCCCHHHHHHHhccC--CceEEecccCccC
Q 026166 142 IEDTMGELKKLVEEGK--IKYIGLSEASADTIRRAHAVH--PITAVQMEYSLWT 191 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~--i~~iGvS~~~~~~l~~~~~~~--~~~~~q~~~~~~~ 191 (242)
++++.++...|+++|. |-.+|+|--..-.+.-+.... ++..+-.+.++..
T Consensus 69 ~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p~K~iv~m~a~~~~k~ 122 (243)
T COG1647 69 WEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYPPKKIVPMCAPVNVKS 122 (243)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCCccceeeecCCccccc
Confidence 4567789999999987 778899876555555554442 2334444444443
No 330
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.54 E-value=1.1e+02 Score=25.69 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-CCcceEecCCCC-------HHHHHHHhccCCceEEec
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE-GKIKYIGLSEAS-------ADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~-G~i~~iGvS~~~-------~~~l~~~~~~~~~~~~q~ 185 (242)
..++..|+-.| +|||++=+-|=....-..+.++...++.++ |---+.|=.-|. .++..+.++...|+++.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 45777888888 899999998765443334444444444433 333344433221 122222222345666666
Q ss_pred ccCccCcChh--hhHHHHHHHhCCcEEe
Q 026166 186 EYSLWTREIE--DDIIPLCRELGIGIVA 211 (242)
Q Consensus 186 ~~~~~~~~~~--~~l~~~~~~~gi~v~a 211 (242)
.-..+.-..+ ..+++.++++|..|++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 5444433222 5677777777776653
No 331
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=22.54 E-value=3.7e+02 Score=24.21 Aligned_cols=95 Identities=9% Similarity=0.093 Sum_probs=52.7
Q ss_pred cCCCEEeCcc--------ccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCC--CCCHHHHHHHHHHHHHHc
Q 026166 54 RGITLFDTSD--------VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGV--KGSPEYVRKCCEASLKRL 123 (242)
Q Consensus 54 ~Gi~~~DtA~--------~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~--~~~~~~i~~~l~~sL~~L 123 (242)
..++++||.. .|. +.....+-.+.+ ..|-++++.+.-...+-.++-... ...++.+...+.+.|++.
T Consensus 291 ~~~~f~Dt~~~~t~~y~~~y~--g~~~p~l~~~~~-~~ryDlvlll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~ 367 (399)
T PRK08099 291 NKVAFIDTDFVTTQAFCKKYE--GREHPFVQALID-EYRFDLTILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKEN 367 (399)
T ss_pred CCeEEEeCChHHHHHHHHHhC--CCCCHHHHHHHH-hCCCCEEEEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHc
Confidence 5799999954 444 334445555555 356566666643322211111111 113567788899999999
Q ss_pred CCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 026166 124 DVDYIDLYYQHRVDTSVSIEDTMGELKKLVE 154 (242)
Q Consensus 124 ~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~ 154 (242)
|..++.+ -..+.......+.++++++..
T Consensus 368 g~~~v~l---~~g~~~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 368 NIEYVHV---ESPDYDKRYLRCVELVDQMLG 395 (399)
T ss_pred CCCEEEE---CCCCHHHHHHHHHHHHHHHhh
Confidence 9875544 212223345556677766654
No 332
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.50 E-value=3.5e+02 Score=25.08 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCCHHHHHHHhccCCceEE
Q 026166 105 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAV 183 (242)
Q Consensus 105 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~-i~~iGvS~~~~~~l~~~~~~~~~~~~ 183 (242)
..++.+...+ +-+.|.++|+++|.+-+ |-.. ..-+++++.+.+.+. .+-.+++......++.+.+.. .+.+
T Consensus 19 ~~~s~e~K~~-ia~~L~~~Gv~~IE~G~---p~~~---~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g-~~~v 90 (488)
T PRK09389 19 VSLTPEEKLE-IARKLDELGVDVIEAGS---AITS---EGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECD-VDSV 90 (488)
T ss_pred CCcCHHHHHH-HHHHHHHcCCCEEEEeC---CcCC---HHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCC-cCEE
Confidence 4466666555 55559999999988854 3211 223555566655443 344445544566677776642 2222
Q ss_pred ec--ccCccCc------C------hhhhHHHHHHHhCCcEE
Q 026166 184 QM--EYSLWTR------E------IEDDIIPLCRELGIGIV 210 (242)
Q Consensus 184 q~--~~~~~~~------~------~~~~l~~~~~~~gi~v~ 210 (242)
.+ ..|..+. . .-.+.+++|+++|..+.
T Consensus 91 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 131 (488)
T PRK09389 91 HLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVE 131 (488)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 22 2222211 1 11557789999987654
No 333
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=1.1e+02 Score=26.18 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=28.2
Q ss_pred ccccceecccccCCcCC------CCCCHHHHHHHHHHHHHcCCCE
Q 026166 20 EVSRLGFGCGGLSGIYN------KPLSHEVGCSIIKETFNRGITL 58 (242)
Q Consensus 20 ~vs~lglG~~~~~~~~~------~~~~~~~~~~~l~~A~~~Gi~~ 58 (242)
-+|.-||||--|..+-. +.+|+-...-+++.|+++||..
T Consensus 8 ViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~ 52 (291)
T COG1210 8 VIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEE 52 (291)
T ss_pred EEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCE
Confidence 47889999966654211 1147778899999999999963
No 334
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.42 E-value=5.2e+02 Score=22.49 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHc-CCCEEeCccccCCCChhHHH--HHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHH
Q 026166 41 HEVGCSIIKETFNR-GITLFDTSDVYGVDHDNEIM--VGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (242)
Q Consensus 41 ~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~~e~~--lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (242)
.++..++++...+. |++.|- ..|.+...-.. +.+.++. .....+-|.|+..... +..+.
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~---lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~-----------P~rit 209 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEIL---ISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI-----------PQRIT 209 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEE---EECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC-----------chhcC
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK 157 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~ 157 (242)
..+-+.|++.+...+.+.....+.... +++.++++.|++.|.
T Consensus 210 ~el~~~L~~~~~~~~~vsh~nh~~Ei~--~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 210 DELCELLASFELQLMLVTHINHCNEIT--EEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHHHHHhcCCcEEEEccCCChHhCC--HHHHHHHHHHHHcCC
No 335
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=22.40 E-value=1.9e+02 Score=22.84 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=28.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
-++++++........++-++.|.+++.+|++|++-+.-
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeee
Confidence 46777765544444567899999999999999875543
No 336
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=22.36 E-value=4.1e+02 Score=21.24 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----------cccCCC-ChhHHHHHHHHhcCCC-CCEEEEeecCcccCCCcccCCCC
Q 026166 40 SHEVGCSIIKETFNRGITLFDTS----------DVYGVD-HDNEIMVGKALKQLPR-DKIQLATKFGCFMLDGVSIGVKG 107 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~-g~~e~~lg~~l~~~~R-~~l~I~tK~~~~~~~~~~~~~~~ 107 (242)
+.++..+..+.+.+.|+..||-- ..||.. ...-+.+-+.++.... -.+-|+.|+..... .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 67888888889999999988742 345521 0123344444443211 11446666633221 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC--CHHHHHHHHHHHHHcCCcceEecCCC-CHHHHHHHhccCCceEEe
Q 026166 108 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV--SIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQ 184 (242)
Q Consensus 108 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~~l~~l~~~G~i~~iGvS~~-~~~~l~~~~~~~~~~~~q 184 (242)
.+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++.... +.+++.++++....+.++
T Consensus 137 -~~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 112222 3334556675 555667653211 11124677777777666666665554 677787777765566666
Q ss_pred cc
Q 026166 185 ME 186 (242)
Q Consensus 185 ~~ 186 (242)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 53
No 337
>PRK07671 cystathionine beta-lyase; Provisional
Probab=22.30 E-value=5.5e+02 Score=22.67 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=31.3
Q ss_pred CHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCccc
Q 026166 167 SADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRG 218 (242)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 218 (242)
+.+.+++++.. .++.++..+.|+.-... -+++.++|+++|+.++.=..++.+
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 55666666532 34555555666543221 267888888888888765555433
No 338
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.24 E-value=4.8e+02 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcc
Q 026166 40 SHEVGCSIIKETFNRGITLFDTSD 63 (242)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (242)
+.++-.++++.-.+.|++.|+...
T Consensus 18 s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 18 PTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 778888999999999999999873
No 339
>PLN02880 tyrosine decarboxylase
Probab=22.09 E-value=5.1e+02 Score=23.98 Aligned_cols=50 Identities=6% Similarity=0.001 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHcCCcce
Q 026166 111 YVRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKY 160 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~lh~p~---~~~~~~~~~~~l~~l~~~G~i~~ 160 (242)
..+.++++++.-||+..=.+..+.... ...+.+..-+++++.+++|++=.
T Consensus 189 ~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~ 241 (490)
T PLN02880 189 QTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF 241 (490)
T ss_pred CchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccE
Confidence 346677777777777543344443321 13455666677777777776543
No 340
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=22.06 E-value=4.6e+02 Score=21.72 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHhcCCCC---CEEEEeecCcccCC----CcccCCCCCHHHHH
Q 026166 41 HEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALKQLPRD---KIQLATKFGCFMLD----GVSIGVKGSPEYVR 113 (242)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~R~---~l~I~tK~~~~~~~----~~~~~~~~~~~~i~ 113 (242)
+..-.+.+..|+++|+++|- .+| ..+.+.++-. .+.. +...+-.+-...-. .-++.+..+...+-
T Consensus 35 K~~~~~~I~~~~~aG~r~fG--ENr-----vQe~~~K~~~-l~~~~~i~WHfIG~LQsNK~k~v~~~~~~ihSlDr~klA 106 (228)
T COG0325 35 KTVPAEDIREAYEAGQRHFG--ENR-----VQEALDKIEA-LKDLPDIEWHFIGPLQSNKVKLVAENFDWIHSLDRLKLA 106 (228)
T ss_pred CCCCHHHHHHHHHcCChhhc--chH-----HHHHHHHHHh-cCcCCCeEEEEechhhhhHHHHHHhhcceeeecCHHHHH
Confidence 33345677899999999881 211 2333333322 2222 22222222111100 13456778888898
Q ss_pred HHHHHHHHHcCCCcccEEEeccC-CC----CCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRV-DT----SVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p-~~----~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
+.+++-...++ ..+++|+==+. .. ....+++.+.+.++.+--.++-.|+-.
T Consensus 107 ~~l~kra~~~~-~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ 162 (228)
T COG0325 107 KELNKRALELP-KPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMT 162 (228)
T ss_pred HHHHHHHHhCC-CCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEe
Confidence 88988666665 35665443333 21 134678888888888888888888865
No 341
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.91 E-value=2.5e+02 Score=23.53 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcceEec-CCCCHHHHHHHhcc--CCceEEecccCccCcChhhhHHHHHHHhCCcEEecccC
Q 026166 148 ELKKLVEEGKIKYIGL-SEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 215 (242)
Q Consensus 148 ~l~~l~~~G~i~~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 215 (242)
.|.+-.++|+. .+|+ .......+.+++.. ..+.++-++..+++...-..++..|+..|+..+..-|-
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 35555556775 3443 22233344444443 45666677888888765578899999999998887764
No 342
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=21.85 E-value=1.2e+02 Score=26.79 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCCcccccceecccccCC-cCCCCC---CHHHHHHHHHHHHHcCCC--EEeCccccCC
Q 026166 16 SQGLEVSRLGFGCGGLSG-IYNKPL---SHEVGCSIIKETFNRGIT--LFDTSDVYGV 67 (242)
Q Consensus 16 ~~g~~vs~lglG~~~~~~-~~~~~~---~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg~ 67 (242)
+-|+.-.+|.||+-.+|- .|..-. --+++.+++++.+++|++ |+|++-....
T Consensus 77 ~~gfp~e~liLGGDHLGPN~Wq~~pA~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA~ 134 (426)
T COG4573 77 KLGFPRERLILGGDHLGPNPWQHLPAAEAMAKADDLVKAYVAAGFTKIHLDASMSCAG 134 (426)
T ss_pred HhCCcHHHHhccCCcCCCCccccCCHHHHHHHHHHHHHHHHHcCceeeecccccccCC
Confidence 346677789999999875 354321 124678899999999998 7787665543
No 343
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.68 E-value=4.1e+02 Score=20.99 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHcCCCEEeCccccCCC-------ChhHHHHHHHHhc-CCCCCEEEEeecCcccCCCcccCCCCCHHHHH
Q 026166 42 EVGCSIIKETFNRGITLFDTSDVYGVD-------HDNEIMVGKALKQ-LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVR 113 (242)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~-------g~~e~~lg~~l~~-~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~ 113 (242)
+.+..++-.++..|-..+= .|++ +-+++++|++..+ ..=.-+-++|-..... ....++.++.+-
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~----cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lT----ai~NDy~yd~vF 99 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLA----CGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLT----AIANDYGYDEVF 99 (176)
T ss_pred HHHHHHHHHHHHcCCEEEE----ECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHh----hhhccccHHHHH
Confidence 5677888999999998884 3432 2246667777653 1113455554443211 123346666654
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhc
Q 026166 114 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA 176 (242)
Q Consensus 114 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~ 176 (242)
.+..+.+|.. =|+++==.+.. .-..++++++..+++|.. -||++.-+-..+..+++
T Consensus 100 ---sRqveA~g~~-GDvLigISTSG--NS~nVl~Ai~~Ak~~gm~-vI~ltG~~GG~~~~~~D 155 (176)
T COG0279 100 ---SRQVEALGQP-GDVLIGISTSG--NSKNVLKAIEAAKEKGMT-VIALTGKDGGKLAGLLD 155 (176)
T ss_pred ---HHHHHhcCCC-CCEEEEEeCCC--CCHHHHHHHHHHHHcCCE-EEEEecCCCcccccccc
Confidence 4555566643 37655433322 345699999999999975 58888888777777764
No 344
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.62 E-value=2.4e+02 Score=24.83 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=32.4
Q ss_pred cccceecccccCC----cCCCCCCHHHHHHHHHHHHHcCCCEEeCccccCCCChhHHHHHHHHh
Q 026166 21 VSRLGFGCGGLSG----IYNKPLSHEVGCSIIKETFNRGITLFDTSDVYGVDHDNEIMVGKALK 80 (242)
Q Consensus 21 vs~lglG~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (242)
+.++.+|..++.. ..+..-+.+++.+.++.+.+.|+..+-+--.||-+|.+.+.+.+.++
T Consensus 110 ~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~ 173 (374)
T PRK05799 110 VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLE 173 (374)
T ss_pred CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHH
Confidence 4456666544432 12333356667777777777777543333466644555555555444
No 345
>PLN02509 cystathionine beta-lyase
Probab=21.51 E-value=6.4e+02 Score=23.19 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=41.5
Q ss_pred cceEecCCCCHHHHHHHhcc-CCceEEecccCccCcChh-hhHHHHHHHhCCcEEecccCccccC
Q 026166 158 IKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFF 220 (242)
Q Consensus 158 i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 220 (242)
+..+. ..+.+.+++++.. .+..++..+.|+.-...+ +.+.+.|+++|+.++.=.+++.|.+
T Consensus 199 v~~vd--~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 199 VKRVN--TTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred EEEeC--CCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 34443 3456777777643 455566677777654333 7899999999999998777776654
No 346
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.46 E-value=5.5e+02 Score=22.71 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCCEEEEeecCcccCCC------cccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccC-CCCCCHHHHHHHHHHHHHcC
Q 026166 84 RDKIQLATKFGCFMLDG------VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV-DTSVSIEDTMGELKKLVEEG 156 (242)
Q Consensus 84 R~~l~I~tK~~~~~~~~------~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p-~~~~~~~~~~~~l~~l~~~G 156 (242)
|.-+.|+|.++...... .....+++++.|..++...-+. +.++-+.+-.. +|....+++.++++.+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 56677888777654322 1223458889999888866322 23455555443 33345688999999998764
Q ss_pred Cc----ceEecCCCCHH-HHHHHhc
Q 026166 157 KI----KYIGLSEASAD-TIRRAHA 176 (242)
Q Consensus 157 ~i----~~iGvS~~~~~-~l~~~~~ 176 (242)
-. +.|-||+.... .+.++.+
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~ 203 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLE 203 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhh
Confidence 43 57777776543 3566544
No 347
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=21.44 E-value=3.4e+02 Score=21.99 Aligned_cols=20 Identities=10% Similarity=0.306 Sum_probs=17.6
Q ss_pred hhhHHHHHHHhCCcEEeccc
Q 026166 195 EDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 195 ~~~l~~~~~~~gi~v~a~sp 214 (242)
..++++.|+++|+.+.+|..
T Consensus 193 ~~~~v~~~~~~gl~v~~wTv 212 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTV 212 (234)
T ss_pred CHHHHHHHHHCCCEEEEEec
Confidence 47899999999999999865
No 348
>PHA02128 hypothetical protein
Probab=21.40 E-value=3.2e+02 Score=19.71 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-----------------CC-ceEE---ecccCccCcChhhhHHHHH
Q 026166 144 DTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-----------------HP-ITAV---QMEYSLWTREIEDDIIPLC 202 (242)
Q Consensus 144 ~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-----------------~~-~~~~---q~~~~~~~~~~~~~l~~~~ 202 (242)
..+..-.++..+|-+|-|-+...+-.+++++... .| ..+. ..+|.+-.+...+++.+++
T Consensus 61 gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydwa 140 (151)
T PHA02128 61 GLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDWA 140 (151)
T ss_pred hHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhhc
Confidence 4666777888888888888877666666665432 11 1122 2367776666568999999
Q ss_pred HHhCCcEEec
Q 026166 203 RELGIGIVAY 212 (242)
Q Consensus 203 ~~~gi~v~a~ 212 (242)
.-+|+.++.+
T Consensus 141 gthgvefvim 150 (151)
T PHA02128 141 GTHGVEFVIM 150 (151)
T ss_pred ccCceEEEEe
Confidence 9999988754
No 349
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.39 E-value=4.9e+02 Score=21.75 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcC-CcceEecCCCCH------HH-HHHHhccCCceEEecccCccCcChhhhHHHHHHHhCCcEE-ecc
Q 026166 143 EDTMGELKKLVEEG-KIKYIGLSEASA------DT-IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV-AYS 213 (242)
Q Consensus 143 ~~~~~~l~~l~~~G-~i~~iGvS~~~~------~~-l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~-a~s 213 (242)
+.+++.+++++++. .+.-+.++-+++ +. ++++.+ ..++.+-++.-+.. ...++++.|+++|+..+ ..+
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~-aGvdgviipDlp~e--e~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKE-VGVDGVLVADLPLE--ESGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHH-cCCCEEEECCCChH--HHHHHHHHHHHCCCcEEEEEC
Confidence 45677788887652 444445554444 43 333333 33443333333332 23789999999998854 555
Q ss_pred c
Q 026166 214 P 214 (242)
Q Consensus 214 p 214 (242)
|
T Consensus 149 P 149 (256)
T TIGR00262 149 P 149 (256)
T ss_pred C
Confidence 5
No 350
>PLN02231 alanine transaminase
Probab=21.29 E-value=5e+02 Score=24.31 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=5.1
Q ss_pred CCCEEEEee
Q 026166 84 RDKIQLATK 92 (242)
Q Consensus 84 R~~l~I~tK 92 (242)
.++|+|++-
T Consensus 191 pe~I~iT~G 199 (534)
T PLN02231 191 PNDIFLTDG 199 (534)
T ss_pred cccEEEeCC
Confidence 456666543
No 351
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=21.27 E-value=1e+02 Score=21.63 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 026166 112 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 165 (242)
Q Consensus 112 i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~ 165 (242)
....|-.-|...|.||.-.+.-.. ..+.+++.+.+++|.+.|.|..+.-+.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 344566677778888765443332 457899999999999999999887553
No 352
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.17 E-value=5.9e+02 Score=25.52 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCcceEecCCCCHHHHHHHhccCCceEEecc
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE--GKIKYIGLSEASADTIRRAHAVHPITAVQME 186 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~--G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~~ 186 (242)
.+.+++-.+.....--....-+|+|+..+... .+.+++|.+..++ ..+..|-+++.....+..+.+. |..++
T Consensus 102 Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR----c~~v~ 175 (824)
T PRK07764 102 VDDARELRERAFFAPAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR----THHYP 175 (824)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh----eeEEE
Confidence 45565533332222222445788888776443 4688888888887 8899999886543333333332 44556
Q ss_pred cCccCcCh-hhhHHHHHHHhCCcE
Q 026166 187 YSLWTREI-EDDIIPLCRELGIGI 209 (242)
Q Consensus 187 ~~~~~~~~-~~~l~~~~~~~gi~v 209 (242)
|..+.... ..-+.+.|++.|+.+
T Consensus 176 F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCC
Confidence 66654421 134556666778753
No 353
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.14 E-value=5.1e+02 Score=21.87 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCEEeCccc
Q 026166 46 SIIKETFNRGITLFDTSDV 64 (242)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~ 64 (242)
--|...++.|+|+||---+
T Consensus 45 ~sI~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 45 LSITDQLDLGARFLELDVH 63 (267)
T ss_pred cCHHHHHhhCCcEEEEeee
Confidence 4567788999999994433
No 354
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=21.12 E-value=2e+02 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=33.3
Q ss_pred CHHHHHHHhccCCce---EEe-cccCccCcCh---hhhHHHHHHHhCCcEEecccCcccc
Q 026166 167 SADTIRRAHAVHPIT---AVQ-MEYSLWTREI---EDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 167 ~~~~l~~~~~~~~~~---~~q-~~~~~~~~~~---~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
++.+++.+.+...+. +|- .+||.|.... ..+++++++.-|-.-+...|+..|-
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s 109 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS 109 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 344555555443322 221 2577776532 2679999999999999999988643
No 355
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.00 E-value=2.4e+02 Score=28.53 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCCH--HHHHHHhccCCceEEecc
Q 026166 111 YVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASA--DTIRRAHAVHPITAVQME 186 (242)
Q Consensus 111 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~~l~~l~~~G~i~~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 186 (242)
.+...+.+.|++.++. .+-+.+.-.+.. .+.+.+.+.++.|++.|- .+.+.+|.. ..+..+.+ .+++.+-+.
T Consensus 941 ~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l~~-~~~d~iKid 1016 (1092)
T PRK09776 941 TLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYLKA-FMADYLKLD 1016 (1092)
T ss_pred hHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHHHh-CCCCEEEEC
Confidence 3455677777777754 244444444432 456778899999999996 233333221 12223322 244544444
Q ss_pred cCccC--------cChhhhHHHHHHHhCCcEEecc
Q 026166 187 YSLWT--------REIEDDIIPLCRELGIGIVAYS 213 (242)
Q Consensus 187 ~~~~~--------~~~~~~l~~~~~~~gi~v~a~s 213 (242)
-+... +.....++..|++.|+.+++=.
T Consensus 1017 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1017 GELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 33322 2223668889999999998643
No 356
>PRK10997 yieM hypothetical protein; Provisional
Probab=20.88 E-value=3.3e+02 Score=25.33 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCC---cccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC--CCCHHHHHHHh
Q 026166 112 VRKCCEASLKRLDVD---YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS--EASADTIRRAH 175 (242)
Q Consensus 112 i~~~l~~sL~~L~~d---~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS--~~~~~~l~~~~ 175 (242)
+..+++..++.++.. .-|+++|-........++..+.+..+++++..+..||+ ++....+.++.
T Consensus 399 l~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~if 467 (487)
T PRK10997 399 LAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIF 467 (487)
T ss_pred HHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhc
Confidence 666777777777642 47899997765443457889999999997777766655 44443444443
No 357
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.86 E-value=5.9e+02 Score=22.53 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEEecccCccCcC-hhhhHHHHHHHh
Q 026166 128 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCREL 205 (242)
Q Consensus 128 iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~ 205 (242)
=|-+++..|.. ..++..+..+...-.++..-+...+.+.+++++.. .+..++..+.|+.-.. .-+.+.++|+++
T Consensus 100 Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~ 175 (388)
T PRK07811 100 GDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDA 175 (388)
T ss_pred CCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHc
Confidence 35566655432 23344443322221222222333567888877643 4455555667764332 227899999999
Q ss_pred CCcEEecccCcccc
Q 026166 206 GIGIVAYSPLGRGF 219 (242)
Q Consensus 206 gi~v~a~spl~~G~ 219 (242)
|+.++.=..++.+.
T Consensus 176 gi~lIvD~a~a~~~ 189 (388)
T PRK07811 176 GAKVVVDNTFASPY 189 (388)
T ss_pred CCEEEEECCCCccc
Confidence 99998766665554
No 358
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=20.85 E-value=5.9e+02 Score=22.51 Aligned_cols=53 Identities=6% Similarity=0.079 Sum_probs=30.6
Q ss_pred CHHHHHHHhcc-CCceEEecccCccCcCh-hhhHHHHHHHhCCcEEecccCcccc
Q 026166 167 SADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGF 219 (242)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~ 219 (242)
+++.++++++. .+..++..+-|+.-... -+++.++|+++|+.++.=...+.+.
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~ 177 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPY 177 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccc
Confidence 45556655532 33344444555433221 2678899999998888666655443
No 359
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.83 E-value=6.3e+02 Score=22.84 Aligned_cols=120 Identities=11% Similarity=-0.037 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CEEe-Cccc-cCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCcccCCCCCHHHH
Q 026166 36 NKPLSHEVGCSIIKETFNRGI-TLFD-TSDV-YGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSIGVKGSPEYV 112 (242)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi-~~~D-tA~~-Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i 112 (242)
+.+.-.....++++.+-+.|+ +.++ |... |. .++.+-+.++ ..-+.+.|+.|....... ..+-....++.+
T Consensus 83 Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~----~~e~~~~L~~-~gld~v~iSvka~dpe~h-~kl~G~~~a~~I 156 (404)
T TIGR03278 83 GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFD----DPEIAEFLID-NGVREVSFTVFATDPELR-REWMKDPTPEAS 156 (404)
T ss_pred cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccC----CHHHHHHHHH-cCCCEEEEecccCCHHHH-HHHhCCCCHHHH
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC
Q 026166 113 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 166 (242)
Q Consensus 113 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~ 166 (242)
.+.++...+. ..=++-+.++...++......+++.|.++ .+..+|+..|
T Consensus 157 Le~L~~L~e~-~~v~~~ivlIPGiND~eel~~ti~~L~~l----g~~~V~L~~y 205 (404)
T TIGR03278 157 LQCLRRFCES-CEVHAASVIIPGVNDGDVLWKTCADLESW----GAKALILMRF 205 (404)
T ss_pred HHHHHHHHhc-CCEEEEEEEeCCccCcHHHHHHHHHHHHC----CCCEEEEEec
No 360
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=20.73 E-value=3.1e+02 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCcceEecCCCCHHHHHHHhccCCceEEec
Q 026166 146 MGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQM 185 (242)
Q Consensus 146 ~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~~~~~q~ 185 (242)
.++++++++.-.-+.||++.++.+++.++.+. ..+++++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~-gaD~I~l 209 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEA-GADILQL 209 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc-CCCEEEE
Confidence 44555555543224588888888888777653 3455554
No 361
>PRK08084 DNA replication initiation factor; Provisional
Probab=20.73 E-value=2.7e+02 Score=22.76 Aligned_cols=109 Identities=6% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHc-CCCEEeCccccCCCChhHHHHHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHH
Q 026166 41 HEVGCSIIKETFNR-GITLFDTSDVYGVDHDNEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKC 115 (242)
Q Consensus 41 ~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~~e~~lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (242)
...+...+....+. +.+.+ -.||..|..-+.+..++.. ....-+|+...- ....
T Consensus 29 n~~a~~~l~~~~~~~~~~~l---~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~------------------~~~~ 87 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYI---YLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK------------------RAWF 87 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeE---EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH------------------Hhhh
Confidence 45566777776543 22222 3788766666666665543 111122322211 1111
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCC----CHHHHHHHHHHHHHcCCcceEecCCCCHHHHH
Q 026166 116 CEASLKRLDVDYIDLYYQHRVDTSV----SIEDTMGELKKLVEEGKIKYIGLSEASADTIR 172 (242)
Q Consensus 116 l~~sL~~L~~d~iDl~~lh~p~~~~----~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~ 172 (242)
..+.++.+ +..|+++|...+... .-++.++.+..+++.|+++-|+.|+..+..+.
T Consensus 88 ~~~~~~~~--~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 88 VPEVLEGM--EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hHHHHHHh--hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 12222332 235888887664321 12346788899999999999999998877743
No 362
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=20.67 E-value=6e+02 Score=22.54 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=47.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhcc-CCceEEecccCccCcC-hhhhHHHHHHHhC
Q 026166 129 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTRE-IEDDIIPLCRELG 206 (242)
Q Consensus 129 Dl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~g 206 (242)
|-+++-.|.. ......+..+...+-+.-.-+...+.+.+++++.. .++.++..+-|+.-.- ..+++.++|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5455544432 23344444444444333222334567777776643 3445555555654322 1268899999999
Q ss_pred CcEEecccCcccc
Q 026166 207 IGIVAYSPLGRGF 219 (242)
Q Consensus 207 i~v~a~spl~~G~ 219 (242)
+.++.=..++.+.
T Consensus 168 ~~vivDeay~~~~ 180 (386)
T PRK08045 168 AVSVVDNTFLSPA 180 (386)
T ss_pred CEEEEECCCCccc
Confidence 8888666665554
No 363
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=20.49 E-value=5.1e+02 Score=21.67 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHcCCcceEecCCCCHHHHHHHhccCC-ceEEec-cc-----------------------Cc-------cCcChhh
Q 026166 149 LKKLVEEGKIKYIGLSEASADTIRRAHAVHP-ITAVQM-EY-----------------------SL-------WTREIED 196 (242)
Q Consensus 149 l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~-~~~~q~-~~-----------------------~~-------~~~~~~~ 196 (242)
++.+++.|.-+.+=+|+|+++.+..+....+ +.+..+ .. +. ......+
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQWNLLGLVSAAEPLVMCP 235 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHHCCCeEEEechHHhhhCh
Confidence 4445556777789999999998877755421 111111 00 00 0001136
Q ss_pred hHHHHHHHhCCcEEeccc
Q 026166 197 DIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 197 ~l~~~~~~~gi~v~a~sp 214 (242)
++++.++++|+.|.+|..
T Consensus 236 ~~v~~~~~~Gl~v~~WTv 253 (286)
T cd08606 236 RLIQVVKRSGLVCVSYGV 253 (286)
T ss_pred HHHHHHHHCCcEEEEECC
Confidence 789999999999999975
No 364
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=20.47 E-value=3.5e+02 Score=19.70 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCC--CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 026166 82 LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDV--DYIDLYYQHRVDTS-VSIEDTMGELKKLVEE 155 (242)
Q Consensus 82 ~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~ 155 (242)
.+|=-+.|+-|++... ..+..+++.+.+++..... ...|++++..+... .+..++.+.|..|.+.
T Consensus 43 ~~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 43 HPRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred CceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3455566666644322 3477888888888765542 34699999988643 4555666666655443
No 365
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.38 E-value=6e+02 Score=22.39 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=66.7
Q ss_pred hHHHHHHHHhc----CCCCCEEEEeecCcccCCCcccCCCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC----H
Q 026166 71 NEIMVGKALKQ----LPRDKIQLATKFGCFMLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS----I 142 (242)
Q Consensus 71 ~e~~lg~~l~~----~~R~~l~I~tK~~~~~~~~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~----~ 142 (242)
.|+-+-+++++ ..++-++|.|-.-...- .-+ +..-+++.-++.+. .++.+|.+....+ .
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~iI-------GdD---~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~ 124 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEII-------GDD---IEAVARELQEEYGI---PVIPVHTPGFSGSYSQGY 124 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHHT-------TTT---HHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHHh-------CCC---HHHHHHHhhcccCC---cEEEEECCCccCCccchH
Confidence 35555555544 44566666666533221 122 33333333344443 8888888876433 3
Q ss_pred HHHHHHHHHHH-H------cCCcceEecCCCC---HHHHHHHhccCCceEEec----------------ccCccCcChh-
Q 026166 143 EDTMGELKKLV-E------EGKIKYIGLSEAS---ADTIRRAHAVHPITAVQM----------------EYSLWTREIE- 195 (242)
Q Consensus 143 ~~~~~~l~~l~-~------~G~i~~iGvS~~~---~~~l~~~~~~~~~~~~q~----------------~~~~~~~~~~- 195 (242)
+.++++|-+.. + .+.|.-+|.++.. ...+.++++...+.++.. .+|+......
T Consensus 125 ~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 125 DAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp HHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred HHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 45566555544 2 3678888998765 345666665544433332 2333333222
Q ss_pred hhHHHHHHHh-CCcEEe-cccC
Q 026166 196 DDIIPLCREL-GIGIVA-YSPL 215 (242)
Q Consensus 196 ~~l~~~~~~~-gi~v~a-~spl 215 (242)
..+.++.+++ |+.++. -.|+
T Consensus 205 ~~~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 205 PYAAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHHHHHHHHHT-EEEEEC-SB
T ss_pred hHHHHHHHHHhCCCeeeccccc
Confidence 2366776664 999988 4443
No 366
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=20.31 E-value=6.5e+02 Score=22.81 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=18.2
Q ss_pred EEecccCccCcChh--hhHHHHHHHhCCcEEe
Q 026166 182 AVQMEYSLWTREIE--DDIIPLCRELGIGIVA 211 (242)
Q Consensus 182 ~~q~~~~~~~~~~~--~~l~~~~~~~gi~v~a 211 (242)
.+|-+-.+.....+ +.+-++|.++|+-+|.
T Consensus 192 PIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~ 223 (404)
T COG4992 192 PIQGEGGVIPAPPEFLKALRELCDEHGALLIL 223 (404)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCeEEEE
Confidence 34555554444332 6677788888877763
No 367
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=20.22 E-value=2.4e+02 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 159 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~~l~~l~~~G~i~ 159 (242)
.+...+.+.+.+++||+...|.+ |.......++.+..++|+++|.+-
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 45667789999999999777753 333346677888999999999874
No 368
>PRK13561 putative diguanylate cyclase; Provisional
Probab=20.20 E-value=4.9e+02 Score=24.71 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCC-----HHHHHHHhccCCceEEecccCccCc-----ChhhhHHHHHHHhCCcEEe
Q 026166 142 IEDTMGELKKLVEEGKIKYIGLSEAS-----ADTIRRAHAVHPITAVQMEYSLWTR-----EIEDDIIPLCRELGIGIVA 211 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGvS~~~-----~~~l~~~~~~~~~~~~q~~~~~~~~-----~~~~~l~~~~~~~gi~v~a 211 (242)
.+.+.+.++++++.|- .|++.+|. ...+..+.. -+++.+-+.-++... ..-..++..|+..|+.++|
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~-l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKS-LPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCC-CCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 4567788999999997 44444443 334433221 345555554333221 1226789999999999986
Q ss_pred ccc
Q 026166 212 YSP 214 (242)
Q Consensus 212 ~sp 214 (242)
=+.
T Consensus 610 egV 612 (651)
T PRK13561 610 EGV 612 (651)
T ss_pred ecC
Confidence 543
No 369
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=20.16 E-value=6e+02 Score=22.31 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCCHHHHHHHhccCC
Q 026166 106 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHP 179 (242)
Q Consensus 106 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~~l~~l~~~G~i~~iGvS~~~~~~l~~~~~~~~ 179 (242)
.++.+...+..+-+.+-+++++|-|=.+...... .+..+++++.++|+++|..-. =+++-++...+++.+..+
T Consensus 146 ~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g~ 219 (326)
T PRK11840 146 CYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAGA 219 (326)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcCC
Confidence 3667888888888888899999988777555433 347899999999999999763 345556777777766644
No 370
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.15 E-value=1.3e+02 Score=21.48 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCCHHHHHHHhcc-CCceEEecccCccCcChhhhHHHHHHHhCCcEEeccc
Q 026166 165 EASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 214 (242)
Q Consensus 165 ~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 214 (242)
..+.+++..+... .+|+++-+--.--.....+++.++++++||.+..+..
T Consensus 38 ~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 38 DLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp CEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred cCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 4456777777776 3455555432222222347899999999999987754
No 371
>PLN02666 5-oxoprolinase
Probab=20.12 E-value=1.1e+03 Score=25.17 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeCcc--ccCCCChhHHHHHHHHhcCCCCCEEEEeecCcccCCCccc-------CCCCC
Q 026166 38 PLSHEVGCSIIKETFNRGITLFDTSD--VYGVDHDNEIMVGKALKQLPRDKIQLATKFGCFMLDGVSI-------GVKGS 108 (242)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~--~Yg~~g~~e~~lg~~l~~~~R~~l~I~tK~~~~~~~~~~~-------~~~~~ 108 (242)
+.+.++..++++...+.|+..+=.+- .|-| ...|..+.+.+++...-.+.+++.+......-.+. ....-
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~N-P~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~TavlnAyl~p~ 250 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTY-PAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPV 250 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCC-hHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHHHHHHHHHHHH
Confidence 35888999999999999999776554 4444 77899999999864334566777776533110000 00001
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHH
Q 026166 109 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIED 144 (242)
Q Consensus 109 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~ 144 (242)
.......+++.|+..+.+ -++++++......+.+.
T Consensus 251 ~~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~~~~ 285 (1275)
T PLN02666 251 IKEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTPESR 285 (1275)
T ss_pred HHHHHHHHHHHHHhcCCC-CCEEEEecCCCcCCHHH
Confidence 123444566666655544 48899988765555443
No 372
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.09 E-value=2.6e+02 Score=23.27 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCcceEec-CCCCHHHHHHHhcc----CCceEEecccCccCcChhhhHHHHHH
Q 026166 142 IEDTMGELKKLVEEGKIKYIGL-SEASADTIRRAHAV----HPITAVQMEYSLWTREIEDDIIPLCR 203 (242)
Q Consensus 142 ~~~~~~~l~~l~~~G~i~~iGv-S~~~~~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~l~~~~~ 203 (242)
.++..+.+.+|+++| -.+|+ |||+ +++..++.. ..|+.+-..|-.--..+++.++.+|-
T Consensus 115 ~~~~~~~lq~lR~~g--~~l~iisN~d-~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al 178 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKG--TILGIISNFD-DRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLAL 178 (237)
T ss_pred ccHHHHHHHHHHhCC--eEEEEecCCc-HHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHH
Confidence 445569999999999 34555 5555 444444332 22333333333333334445555444
Done!