Your job contains 1 sequence.
>026167
MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ
SDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP
HEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPV
KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCF
ST
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026167
(242 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2005674 - symbol:AT1G75510 species:3702 "Arabi... 728 5.3e-72 1
POMBASE|SPBC1198.13c - symbol:tfg2 "transcription factor ... 203 2.3e-16 1
UNIPROTKB|P13984 - symbol:GTF2F2 "General transcription f... 166 2.1e-11 1
UNIPROTKB|Q2T9L9 - symbol:GTF2F2 "General transcription f... 160 2.0e-10 1
FB|FBgn0010421 - symbol:TfIIFbeta "Transcription factor T... 161 2.6e-10 1
MGI|MGI:1915955 - symbol:Gtf2f2 "general transcription fa... 159 2.7e-10 1
UNIPROTKB|Q63489 - symbol:Gtf2f2 "RAP30" species:10116 "R... 157 5.3e-10 1
RGD|620772 - symbol:Gtf2f2 "general transcription factor ... 154 1.4e-09 1
UNIPROTKB|E2RGQ0 - symbol:GTF2F2 "Uncharacterized protein... 149 6.2e-09 1
ZFIN|ZDB-GENE-050417-374 - symbol:gtf2f2b "general transc... 138 1.9e-07 1
UNIPROTKB|E1BXD0 - symbol:GTF2F2 "Uncharacterized protein... 131 1.6e-06 1
SGD|S000003237 - symbol:TFG2 "TFIIF (Transcription Factor... 132 3.2e-06 1
DICTYBASE|DDB_G0287131 - symbol:gtf2f2 "TFIIF subunit" sp... 127 3.6e-06 1
ASPGD|ASPL0000051527 - symbol:AN1538 species:162425 "Emer... 102 6.0e-06 2
UNIPROTKB|G3X7X9 - symbol:LOC100850122 "Uncharacterized p... 125 7.9e-06 1
WB|WBGene00012694 - symbol:Y39B6A.36 species:6239 "Caenor... 119 4.4e-05 1
ZFIN|ZDB-GENE-040625-131 - symbol:gtf2f2a "general transc... 113 0.00023 1
>TAIR|locus:2005674 [details] [associations]
symbol:AT1G75510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA;ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;RCA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA;ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003743 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AC006434 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 HSSP:P13984
OMA:IDNDRGV EMBL:AF324673 EMBL:AF327423 EMBL:AF339714 EMBL:AY463609
EMBL:AK226474 IPI:IPI00532425 RefSeq:NP_177683.1 UniGene:At.15696
ProteinModelPortal:Q9LQZ4 SMR:Q9LQZ4 STRING:Q9LQZ4 PaxDb:Q9LQZ4
PRIDE:Q9LQZ4 EnsemblPlants:AT1G75510.1 GeneID:843887
KEGG:ath:AT1G75510 TAIR:At1g75510 HOGENOM:HOG000238322
InParanoid:Q9LQZ4 PhylomeDB:Q9LQZ4 ProtClustDB:CLSN2914241
ArrayExpress:Q9LQZ4 Genevestigator:Q9LQZ4 Uniprot:Q9LQZ4
Length = 261
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 145/218 (66%), Positives = 170/218 (77%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQ-------DSQP-VAKVILSLDPLQSDSM- 64
NLD K+DRS+WLMKCP+VV K+W A+S DS P +AK++ +DPL+ DS
Sbjct: 6 NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSPP 65
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+F M V + N PK Y+LNMF DFVPM FS+ NQG A EGKV+HKFDMKP+ +
Sbjct: 66 EFKMYM--VGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGET 123
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+EEY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K PVKQTE
Sbjct: 124 IEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTE 183
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPA
Sbjct: 184 VKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPA 221
>POMBASE|SPBC1198.13c [details] [associations]
symbol:tfg2 "transcription factor TFIIF complex beta
subunit Tfg2 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005674 "transcription factor TFIIF complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR003196
InterPro:IPR011039 Pfam:PF02270 PomBase:SPBC1198.13c GO:GO:0005524
GO:GO:0006355 GO:GO:0044732 GO:GO:0003677 EMBL:CU329671
Gene3D:1.10.10.10 InterPro:IPR011991 GenomeReviews:CU329671_GR
GO:GO:0004003 KO:K03139 GO:GO:0006367 GO:GO:0000991 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445 PIR:T40615
RefSeq:NP_595082.1 ProteinModelPortal:O94424 IntAct:O94424
STRING:O94424 EnsemblFungi:SPBC1198.13c.1 GeneID:2539924
KEGG:spo:SPBC1198.13c HOGENOM:HOG000141627 OMA:WLVKIPK
OrthoDB:EOG4Q886J NextBio:20801067 Uniprot:O94424
Length = 307
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 70/243 (28%), Positives = 115/243 (47%)
Query: 2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
EDD+ + + G+LD + VWL+K P + W N D+ + V +++
Sbjct: 12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
D +Q ++ S ++ + PK Y+L + FV S VF ES A+ G V H+
Sbjct: 64 DEIQLLLQN---SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
++ P ++Y R+ ++R + R++Q+ID D G + PG +G S S + +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMID-DRGGSLLA-PGTLGSRSRSTTSFIR 176
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
+P +K +R R EL DI+FK FE W LK L + QP V+ L + +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236
Query: 236 NLR 238
N R
Sbjct: 237 NKR 239
>UNIPROTKB|P13984 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9606 "Homo sapiens" [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_71 InterPro:IPR003196
InterPro:IPR011039 InterPro:IPR016640 Pfam:PF02270
PIRSF:PIRSF015849 GO:GO:0005524 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 EMBL:CH471075
Reactome:REACT_1675 GO:GO:0045944 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006368 KO:K03139 GO:GO:0006367
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0008026 GO:GO:0006370
GO:GO:0050434 Reactome:REACT_1892 EMBL:AL138693 SUPFAM:SSF50916
GO:GO:0005674 PDB:1F3U PDBsum:1F3U CTD:2963 eggNOG:COG5090
HOGENOM:HOG000294179 HOVERGEN:HBG001606 OMA:IVQKLEC
OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:X16901 EMBL:X59745
EMBL:AK291545 EMBL:BT019525 EMBL:AL138963 EMBL:BC001771
IPI:IPI00477686 PIR:S06141 PIR:S18677 RefSeq:NP_004119.1
UniGene:Hs.654582 PDB:1BBY PDB:2BBY PDBsum:1BBY PDBsum:2BBY
ProteinModelPortal:P13984 SMR:P13984 DIP:DIP-41680N IntAct:P13984
MINT:MINT-193667 STRING:P13984 PhosphoSite:P13984 DMDM:464519
PaxDb:P13984 PeptideAtlas:P13984 PRIDE:P13984 DNASU:2963
Ensembl:ENST00000340473 GeneID:2963 KEGG:hsa:2963 UCSC:uc001uzw.3
GeneCards:GC13P045694 HGNC:HGNC:4653 HPA:HPA006912 MIM:189969
neXtProt:NX_P13984 PharmGKB:PA29039 InParanoid:P13984
EvolutionaryTrace:P13984 GenomeRNAi:2963 NextBio:11746 Bgee:P13984
CleanEx:HS_GTF2F2 Genevestigator:P13984 GermOnline:ENSG00000188342
Uniprot:P13984
Length = 249
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 63/223 (28%), Positives = 109/223 (48%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD AK + VWL+K P +++ W +AS + V K+ ++ +++ + FT+
Sbjct: 4 RGELDLTGAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGKLRIAKTQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y RL R + +S R Q +D + +P+ N + ++K K
Sbjct: 120 AS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
+ + KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVY 212
>UNIPROTKB|Q2T9L9 [details] [associations]
symbol:GTF2F2 "General transcription factor IIF subunit 2"
species:9913 "Bos taurus" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0015630 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 EMBL:BC111360 IPI:IPI00687093
RefSeq:NP_001033153.1 UniGene:Bt.87914 ProteinModelPortal:Q2T9L9
SMR:Q2T9L9 STRING:Q2T9L9 Ensembl:ENSBTAT00000048870 GeneID:509259
KEGG:bta:509259 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 InParanoid:Q2T9L9 OMA:IVQKLEC OrthoDB:EOG4RNB9C
NextBio:20868899 PANTHER:PTHR10445 Uniprot:Q2T9L9
Length = 249
Score = 160 (61.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 61/220 (27%), Positives = 106/220 (48%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+
Sbjct: 4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y RL R + +S R Q +D + +P+ N + ++K K
Sbjct: 120 AN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + KR R D+ + D++F FE+ + LK LV T QP
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209
>FB|FBgn0010421 [details] [associations]
symbol:TfIIFbeta "Transcription factor TFIIFbeta"
species:7227 "Drosophila melanogaster" [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=IDA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0001096 "TFIIF-class transcription factor
binding" evidence=IPI] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0005674 "transcription
factor TFIIF complex" evidence=ISS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0032968 GO:GO:0008026 GO:GO:0060261
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:U25188 EMBL:U02461 EMBL:AY071514 PIR:S57336 RefSeq:NP_524305.2
UniGene:Dm.20167 ProteinModelPortal:P41900 SMR:P41900 IntAct:P41900
STRING:P41900 PaxDb:P41900 EnsemblMetazoa:FBtr0082310 GeneID:41290
KEGG:dme:Dmel_CG6538 CTD:41290 FlyBase:FBgn0010421
InParanoid:P41900 OrthoDB:EOG4FN30M PhylomeDB:P41900
GenomeRNAi:41290 NextBio:823133 Bgee:P41900 GermOnline:CG6538
Uniprot:P41900
Length = 277
Score = 161 (61.7 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 57/224 (25%), Positives = 104/224 (46%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQ-------------NQASSQDSQ---PVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ N+ Q +Q + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
E K+ R D+ + D++F FE+ + +K LV+ T+QP
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQP 226
>MGI|MGI:1915955 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide
2" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005674 "transcription factor TFIIF complex"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 MGI:MGI:1915955
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963 eggNOG:COG5090
GeneTree:ENSGT00390000016051 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OMA:IVQKLEC OrthoDB:EOG4RNB9C PANTHER:PTHR10445
EMBL:BC027173 IPI:IPI00135812 RefSeq:NP_081092.1 UniGene:Mm.20415
ProteinModelPortal:Q8R0A0 SMR:Q8R0A0 STRING:Q8R0A0
PhosphoSite:Q8R0A0 PaxDb:Q8R0A0 PRIDE:Q8R0A0
Ensembl:ENSMUST00000088922 GeneID:68705 KEGG:mmu:68705
InParanoid:Q8R0A0 NextBio:327734 Bgee:Q8R0A0 CleanEx:MM_GTF2F2
Genevestigator:Q8R0A0 GermOnline:ENSMUSG00000067995 Uniprot:Q8R0A0
Length = 249
Score = 159 (61.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 61/220 (27%), Positives = 108/220 (49%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD AK + VWL+K P +++ W +AS + V K+ ++ + +++ + FT+
Sbjct: 4 RGELDLTGAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S R Q +D + +P+ N + ++K K
Sbjct: 120 AS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + KR R D+ + D++F FE+ + LK LV T QP
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209
>UNIPROTKB|Q63489 [details] [associations]
symbol:Gtf2f2 "RAP30" species:10116 "Rattus norvegicus"
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 Gene3D:1.10.10.10 InterPro:IPR011991
KO:K03139 GO:GO:0006367 GO:GO:0008026 EMBL:CH473951 SUPFAM:SSF50916
GO:GO:0005674 CTD:2963 GeneTree:ENSGT00390000016051
HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984 UniGene:Rn.11000
EMBL:BC091112 EMBL:D10665 IPI:IPI00393617 PIR:S35491
RefSeq:NP_112304.2 SMR:Q63489 STRING:Q63489
Ensembl:ENSRNOT00000044254 GeneID:81674 KEGG:rno:81674
InParanoid:Q63489 NextBio:615272 Genevestigator:Q63489
Uniprot:Q63489
Length = 249
Score = 157 (60.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 60/220 (27%), Positives = 106/220 (48%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+
Sbjct: 4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S R Q +D + +P+ N + ++K K
Sbjct: 120 AS--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + KR R D+ + D++F FE+ + LK LV T QP
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209
>RGD|620772 [details] [associations]
symbol:Gtf2f2 "general transcription factor IIF, polypeptide 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 RGD:620772
GO:GO:0005524 GO:GO:0015630 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 HOGENOM:HOG000294179
HOVERGEN:HBG001606 OrthoDB:EOG4RNB9C PANTHER:PTHR10445 EMBL:L01267
IPI:IPI00327034 UniGene:Rn.11000 ProteinModelPortal:Q01750
SMR:Q01750 STRING:Q01750 PhosphoSite:Q01750 PRIDE:Q01750
UCSC:RGD:620772 InParanoid:Q01750 ArrayExpress:Q01750
Genevestigator:Q01750 GermOnline:ENSRNOG00000029316 Uniprot:Q01750
Length = 249
Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 60/220 (27%), Positives = 105/220 (47%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+
Sbjct: 4 RGELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S R Q D + +P+ N + ++K K
Sbjct: 120 AS--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + KR R D+ + D++F FE+ + LK LV T QP
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209
>UNIPROTKB|E2RGQ0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 GeneTree:ENSGT00390000016051
OMA:IVQKLEC PANTHER:PTHR10445 EMBL:AAEX03017756
Ensembl:ENSCAFT00000020476 Uniprot:E2RGQ0
Length = 245
Score = 149 (57.5 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 59/220 (26%), Positives = 105/220 (47%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
+G LD + K + VWL+K P +++ W A V K+ ++ + +++ + FT+
Sbjct: 4 RGELDLTSTKQNTGVWLVKVPKYLSQQW---AKDPGRGEVGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D + S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EDLANIHDIGGKLASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP- 118
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E+Y RL R + +S R Q +D + +P+ N + ++K K
Sbjct: 119 -ATSEKYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANH----QYNIEYERK----K 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ + KR R D+ + D++F FE+ + LK LV T QP
Sbjct: 170 KEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQP 209
>ZFIN|ZDB-GENE-050417-374 [details] [associations]
symbol:gtf2f2b "general transcription factor IIF,
polypeptide 2b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-050417-374 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 KO:K03139 GO:GO:0006367 GO:GO:0008026
SUPFAM:SSF50916 GO:GO:0005674 HOGENOM:HOG000294179
HOVERGEN:HBG001606 PANTHER:PTHR10445 EMBL:BC092783 IPI:IPI00498385
RefSeq:NP_001017832.1 UniGene:Dr.87723 ProteinModelPortal:Q568N8
SMR:Q568N8 STRING:Q568N8 GeneID:100148942 KEGG:dre:100148942
CTD:100148942 NextBio:20792568 Uniprot:Q568N8
Length = 256
Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 57/220 (25%), Positives = 107/220 (48%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM-QFTM--ET 70
+L AK + VWL+K P +++ W +AS + V K L + Q ++ F + E
Sbjct: 9 DLTRAKQNTGVWLVKVPKYLSQQWA-KASGRGE--VGK--LKIGKAQGKTVVSFNLNEEL 63
Query: 71 TAV--SND---SLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
T V S + S+ P+ + M ++VF+ES+ K+A+EG V + + +P
Sbjct: 64 TVVDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTESSD-KIALEGMVVQRAECRPAVS- 121
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
E Y +L + + +S R Q ++ + +P+ S N + +K+ K+ E
Sbjct: 122 -ESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPVSNH----SHNLEYEKR----KKEE 172
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
KR R D+ ++ +++F FE+ + ++ LV T QP ++
Sbjct: 173 GKRARADKQKVLEMLFSAFEKHQFYNIRDLVDITKQPVIY 212
>UNIPROTKB|E1BXD0 [details] [associations]
symbol:GTF2F2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 InterPro:IPR016640
Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139 GO:GO:0006367
GO:GO:0008026 SUPFAM:SSF50916 GO:GO:0005674 CTD:2963
GeneTree:ENSGT00390000016051 OMA:IVQKLEC PANTHER:PTHR10445
EMBL:AADN02005449 EMBL:AADN02005448 IPI:IPI00583886
RefSeq:XP_417039.2 UniGene:Gga.28057 Ensembl:ENSGALT00000027426
GeneID:418843 KEGG:gga:418843 NextBio:20821979 Uniprot:E1BXD0
Length = 262
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 52/229 (22%), Positives = 107/229 (46%)
Query: 12 KGNLDTA--KADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD K + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGVKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P + S F+ ++VF+ES+ E +D
Sbjct: 60 EELASISDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTESQPEEKSESGSYDKLSL 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQ--- 178
E + + CR +++ +K ++ Q+ ++ V + + +++N K Q
Sbjct: 120 EGIVVQRAE-CRPAASENYMKLKRFQIEESSKPVRLSQQ--LDKAVTTNYKPVANHQYNI 176
Query: 179 ---PVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
K+ + KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 177 EYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIY 225
>SGD|S000003237 [details] [associations]
symbol:TFG2 "TFIIF (Transcription Factor II) middle subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA;IDA]
[GO:0051123 "RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IC] [GO:0001174 "transcriptional start
site selection at RNA polymerase II promoter" evidence=IMP]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA;IDA]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=IC] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IC] InterPro:IPR003196 InterPro:IPR011039
Pfam:PF02270 SGD:S000003237 GO:GO:0005524 GO:GO:0006355
EMBL:BK006941 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004386 GO:GO:0006368 RefSeq:NP_011519.3 GeneID:852888
KEGG:sce:YGR005C KO:K03139 GO:GO:0000991 GO:GO:0051123 EMBL:U13016
GO:GO:0001111 KO:K08508 RefSeq:NP_011523.3 GeneID:852892
KEGG:sce:YGR009C GO:GO:0001174 SUPFAM:SSF50916 GO:GO:0005674
eggNOG:COG5090 GeneTree:ENSGT00390000016051 PANTHER:PTHR10445
OrthoDB:EOG4Q886J EMBL:Z72790 EMBL:AY692871 PIR:S64294
ProteinModelPortal:P41896 SMR:P41896 DIP:DIP-1152N IntAct:P41896
MINT:MINT-562451 STRING:P41896 PaxDb:P41896 PeptideAtlas:P41896
EnsemblFungi:YGR005C CYGD:YGR005c HOGENOM:HOG000000947 OMA:KTIPKKT
NextBio:972547 Genevestigator:P41896 GermOnline:YGR005C
Uniprot:P41896
Length = 400
Score = 132 (51.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 37/118 (31%), Positives = 58/118 (49%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMP-SMNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTMSHT-GM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
>DICTYBASE|DDB_G0287131 [details] [associations]
symbol:gtf2f2 "TFIIF subunit" species:44689
"Dictyostelium discoideum" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IEA;ISS] [GO:0005674
"transcription factor TFIIF complex" evidence=IEA;ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270
dictyBase:DDB_G0287131 GO:GO:0005524 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0004386 KO:K03139 GO:GO:0006367 EMBL:AAFI02000098
SUPFAM:SSF50916 GO:GO:0005674 eggNOG:COG5090 PANTHER:PTHR10445
RefSeq:XP_637343.1 HSSP:P13984 STRING:Q54KT7
EnsemblProtists:DDB0231010 GeneID:8625965 KEGG:ddi:DDB_G0287131
ProtClustDB:CLSZ2728878 Uniprot:Q54KT7
Length = 241
Score = 127 (49.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
G ++T AD VWL+K P +++SWQ + Q K + LS P +F +
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
TTA + D N+P + +FSE G +A+EG + + D+K ++ +Y
Sbjct: 69 ITTANTLD--NQP-------------LKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112
Query: 129 GRLCRERTNKSMIKNRQIQVID 150
L + R K K R QVID
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVID 134
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 37/131 (28%), Positives = 60/131 (45%)
Query: 91 DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID 150
D P+ +FSE G +A+EG + + D+K ++ +Y L + R K K R QVID
Sbjct: 76 DNQPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQYRDLMKSRHTKYNTKTRMTQVID 134
Query: 151 NDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWA 210
+S+ +KK K T+ K+ + E+ D++F F + +
Sbjct: 135 ESELFTPTLFDANKVKVSTVGITQKK----KSTD-KKEKLPEDEVLDLIFSAFRAEKHLD 189
Query: 211 LKQLVQETDQP 221
LK L T+QP
Sbjct: 190 LKTLESFTEQP 200
>ASPGD|ASPL0000051527 [details] [associations]
symbol:AN1538 species:162425 "Emericella nidulans"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005674 "transcription factor TFIIF complex" evidence=IEA]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
Pfam:PF02270 GO:GO:0005524 GO:GO:0003824 EMBL:BN001307
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AACD01000025
GO:GO:0003743 KO:K03139 GO:GO:0006367 SUPFAM:SSF50916 GO:GO:0005674
eggNOG:COG5090 PANTHER:PTHR10445 OMA:KTIPKKT RefSeq:XP_659142.1
ProteinModelPortal:Q5BD42 STRING:Q5BD42
EnsemblFungi:CADANIAT00008165 GeneID:2875661 KEGG:ani:AN1538.2
HOGENOM:HOG000158361 OrthoDB:EOG4J6W0H Uniprot:Q5BD42
Length = 357
Score = 102 (41.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 33/134 (24%), Positives = 61/134 (45%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHG--VHMR-PMP 161
+ A+ G+V+ +F+ P E EE+ L ++ +++ R+++ +D + R +P
Sbjct: 167 RTALVGQVKEEFNCLPVEN--EEFRILSEKKALEALKPRREVKYVDKMPAKLLQQRHALP 224
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G G +K K +K E K TR + EL D++++ F W K L QP
Sbjct: 225 GEQGAFVQATKPAK----LKAQENKTTRMPQNELLDLIYQCFREYRYWPFKTLKARLRQP 280
Query: 222 AVWFLIFLIPLHHI 235
+ L + H+
Sbjct: 281 EAYLKQTLEMIAHL 294
Score = 67 (28.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 3 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
DD+ + + G+LD AD+S+WL + P + + W ++ D + V L L +S+
Sbjct: 31 DDEDVYEDD-GDLDFTNADQSLWLSRIPRSLWEHW-SKLDDDDEIQIGTVSLRLT--ESE 86
Query: 63 SMQFTMETTAVSNDSLN 79
+ + +S +LN
Sbjct: 87 ENRDIPKDYILSRQTLN 103
>UNIPROTKB|G3X7X9 [details] [associations]
symbol:LOC100850122 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR003196 InterPro:IPR011039 Pfam:PF02270 GO:GO:0005524
GO:GO:0003824 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006367
EMBL:DAAA02009128 SUPFAM:SSF50916 GO:GO:0005674
GeneTree:ENSGT00390000016051 PANTHER:PTHR10445 UniGene:Bt.102696
Ensembl:ENSBTAT00000048631 OMA:NEVECEL Uniprot:G3X7X9
Length = 257
Score = 125 (49.1 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 50/219 (22%), Positives = 104/219 (47%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AV-SNDS----LNRPKSYSLNMFKDFVP-MSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ D ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ I +K+K K+T
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPVANHQYNIEY---EKRK----KETG- 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
KR + D+ ++ ++F FE+ + +K LV T QP V+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVY 220
>WB|WBGene00012694 [details] [associations]
symbol:Y39B6A.36 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005674 "transcription
factor TFIIF complex" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849 GO:GO:0005524
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040010
GO:GO:0000003 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K03139
GO:GO:0006367 GO:GO:0008026 EMBL:AL132948 SUPFAM:SSF50916
GO:GO:0005674 eggNOG:COG5090 GeneTree:ENSGT00390000016051
HOGENOM:HOG000294179 PANTHER:PTHR10445 HSSP:P13984
RefSeq:NP_741661.1 ProteinModelPortal:Q8MYM8 SMR:Q8MYM8
STRING:Q8MYM8 PaxDb:Q8MYM8 EnsemblMetazoa:Y39B6A.36 GeneID:180243
KEGG:cel:CELE_Y39B6A.36 UCSC:Y39B6A.36 CTD:180243
WormBase:Y39B6A.36 InParanoid:Q8MYM8 OMA:IDNDRGV NextBio:908550
Uniprot:Q8MYM8
Length = 263
Score = 119 (46.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 56/227 (24%), Positives = 103/227 (45%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQ-NQASSQDSQPV-AKVILS-----LDPLQSDSMQF 66
++D A RS+WL+K P +++ W N+ + + A+V L + P + +
Sbjct: 10 DVDCELAKRSIWLVKVPRYLSELWDANEGNVVGKLQIGAQVELHTAKGLIHPKPKEPTEG 69
Query: 67 TMETTAVSNDSLNRPKSYS--LNMFKDFVPMSVFSESNQG----------KVAMEGKVEH 114
+ +T ++ P YS L+ K MSV SE QG K+A+EG++
Sbjct: 70 S-SSTVTQPEASEIPTEYSFILHDVKSQT-MSVLSEDKQGLGADAPIKTGKLAIEGRIIK 127
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P + +Y ++ K+ + +++I+ V +P +S +++D
Sbjct: 128 KAECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIEKA-AVKFKP-------VSVHAEDM 177
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
K++ K+ K R DR L +FK FE+ + L+ L Q QP
Sbjct: 178 IKSKQ-KKDGAKTYRADRDVLRGALFKAFEKHSFYRLQDLQQLLQQP 223
>ZFIN|ZDB-GENE-040625-131 [details] [associations]
symbol:gtf2f2a "general transcription factor IIF,
polypeptide 2a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005674 "transcription factor TFIIF
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR003196 InterPro:IPR011039
InterPro:IPR016640 Pfam:PF02270 PIRSF:PIRSF015849
ZFIN:ZDB-GENE-040625-131 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006367 GO:GO:0008026 SUPFAM:SSF50916
GO:GO:0005674 HOVERGEN:HBG001606 PANTHER:PTHR10445 HSSP:P13984
EMBL:BC071444 IPI:IPI00832374 UniGene:Dr.74541
ProteinModelPortal:Q6IQG2 SMR:Q6IQG2 STRING:Q6IQG2 PRIDE:Q6IQG2
InParanoid:Q6IQG2 NextBio:20818885 ArrayExpress:Q6IQG2 Bgee:Q6IQG2
Uniprot:Q6IQG2
Length = 265
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 55/239 (23%), Positives = 107/239 (44%)
Query: 12 KGNLDT--AKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG +D AK + VWL+K P +++ W +A+ + V K+ +S + +++ + FT+
Sbjct: 4 KGEVDLTGAKQNAGVWLVKVPKYLSQQW-TKATGRGE--VGKLRISKNQGKAE-VSFTLN 59
Query: 69 ------ETTAVSNDSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------------K 105
ET + P+ + + ++VF+E++ G K
Sbjct: 60 EELTTIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPDK 119
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+A+ G V + + +P E Y RL + + + R Q +D + +P+
Sbjct: 120 IALGGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVAN--- 174
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
+ + D +K K+ E KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 175 --HAYNLDYEKR---KKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIY 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 242 242 0.00096 113 3 11 22 0.44 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 607 (65 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.71u 0.11s 24.82t Elapsed: 00:00:01
Total cpu time: 24.71u 0.11s 24.82t Elapsed: 00:00:01
Start: Fri May 10 00:44:51 2013 End: Fri May 10 00:44:52 2013