BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026167
(242 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255538806|ref|XP_002510468.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223551169|gb|EEF52655.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 257
Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 184/233 (78%), Positives = 202/233 (86%), Gaps = 3/233 (1%)
Query: 7 NHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQ 65
+HG+ G L+TAKADRSVWLMKCPLVVA+SW++ ASS DS PVAKV+LSLDPL+SD S+Q
Sbjct: 4 DHGSSSGILETAKADRSVWLMKCPLVVARSWKSHASSSDSHPVAKVVLSLDPLRSDDSLQ 63
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME N N PKSYSLNMFKDFVPMSVFSE+ QG+VA+EGKVEHKFDMKPHE+NM
Sbjct: 64 FTMEMAGTENG--NVPKSYSLNMFKDFVPMSVFSETTQGRVAIEGKVEHKFDMKPHEENM 121
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
EEYGRLCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLISS+SKDKKK PVKQ+++
Sbjct: 122 EEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSSSKDKKKTAPVKQSDM 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 182 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 234
>gi|317106673|dbj|BAJ53176.1| JHL18I08.10 [Jatropha curcas]
Length = 262
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 183/241 (75%), Positives = 207/241 (85%), Gaps = 5/241 (2%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M++D N+G+ G L+TAKADRSVWLMKCPLVVAKSWQ+ ASS DS PVAKV+LSLDPL+
Sbjct: 1 MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60
Query: 61 SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
SD ++QFTME N+ N PKSYSLNMFKDFVPM VFSE++QG+VAMEGKVEHKFD
Sbjct: 61 SDDPSALQFTMEMAG--NEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFD 118
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
MKPHE+N+EEYGRLCRERTNKSM+KNRQIQVIDND GVHMRPMPGM+GL+SS+SKDKKK
Sbjct: 119 MKPHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSKDKKKT 178
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
PVKQ+++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N
Sbjct: 179 APVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 238
Query: 238 R 238
R
Sbjct: 239 R 239
>gi|449469921|ref|XP_004152667.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
gi|449520699|ref|XP_004167371.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Cucumis sativus]
Length = 260
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/239 (73%), Positives = 195/239 (81%), Gaps = 6/239 (2%)
Query: 3 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
+D+ G NLDT KADRSVWLMKCPL+VAKSWQ S DS P+AKVILSLDPLQSD
Sbjct: 2 EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-DSLPLAKVILSLDPLQSD 60
Query: 63 ---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMK 119
S+QF ME ++ N PKS+SLNMFKDFVPM VFSE++QGKV+MEGKVEHKFDMK
Sbjct: 61 ESSSLQFKMEMAGT--ETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 118
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
PH +N+E YG+LCRERTNKSM+KNRQIQVIDND GVHMRPMPGMVGLISS SK+KKK P
Sbjct: 119 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAP 178
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
VKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 179 VKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 237
>gi|224085774|ref|XP_002307692.1| predicted protein [Populus trichocarpa]
gi|118481065|gb|ABK92486.1| unknown [Populus trichocarpa]
gi|222857141|gb|EEE94688.1| predicted protein [Populus trichocarpa]
Length = 261
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/243 (72%), Positives = 200/243 (82%), Gaps = 10/243 (4%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQAS--SQDSQPVAKVILSLDP 58
ME+D S+ NL+T+KAD+SVWLMKCP+VVAKSW+ S S DS P+AKV+LSLDP
Sbjct: 1 MEEDNSSSS---ANLETSKADKSVWLMKCPVVVAKSWKTHTSPSSSDSAPLAKVVLSLDP 57
Query: 59 LQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHK 115
LQSD ++QFTME ++ N PKSYSLNMFKDFVPM VFSE+ QGKVAMEGKVEHK
Sbjct: 58 LQSDDPSALQFTMEM--ARTEAGNVPKSYSLNMFKDFVPMCVFSETPQGKVAMEGKVEHK 115
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
FDMKPHE+N+EEY +LCRERT KSM+K RQIQVI+ND GVHMRPMPGMVGLISS+SKDKK
Sbjct: 116 FDMKPHEQNIEEYHKLCRERTKKSMVKIRQIQVINNDRGVHMRPMPGMVGLISSSSKDKK 175
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
+ QPVKQ++VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L
Sbjct: 176 RPQPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVY 235
Query: 236 NLR 238
N R
Sbjct: 236 NKR 238
>gi|224062059|ref|XP_002300734.1| predicted protein [Populus trichocarpa]
gi|222842460|gb|EEE80007.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/228 (74%), Positives = 194/228 (85%), Gaps = 6/228 (2%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQ-ASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
L+T+KAD++VWLMKCP+VVAKSW++ SS DS P+AKV+LSLDPLQSD ++QFTME
Sbjct: 17 LETSKADKAVWLMKCPVVVAKSWKSHHTSSSDSAPLAKVVLSLDPLQSDDPSAIQFTME- 75
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGR 130
++ N PKSYSLNMFKDFVPM VFSE+ QG+V+MEGKVEHKFDMKPHE+N+EEY +
Sbjct: 76 -MARTETGNVPKSYSLNMFKDFVPMGVFSETPQGRVSMEGKVEHKFDMKPHEENIEEYSK 134
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
LCR+RT KSMIKNRQI+VIDND GVHMRPMPGMVGLISS SKDKKK QPVKQ++VKRTRR
Sbjct: 135 LCRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMVGLISSTSKDKKKTQPVKQSDVKRTRR 194
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
DRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 195 DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 242
>gi|356518378|ref|XP_003527856.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Glycine max]
Length = 262
Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 196/244 (80%), Gaps = 11/244 (4%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M+++ G+ NL+T KA+RSVWLMKCPLVVAKSWQ SQ P+AKV+LSLDPL
Sbjct: 1 MDEENGYSGSISSNLETTKAERSVWLMKCPLVVAKSWQTHPPSQ---PLAKVVLSLDPLH 57
Query: 61 SD-----SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEH 114
+ ++QFTME +++N K+YSLNMFKDFVPM VFSE++QG KVAMEGKVEH
Sbjct: 58 PEEDDPSAVQFTMEMAGT--EAVNMSKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEH 115
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
KFDMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDK
Sbjct: 116 KFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDK 175
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
KK QPVKQ++ KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L
Sbjct: 176 KKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCV 235
Query: 235 INLR 238
N R
Sbjct: 236 YNKR 239
>gi|302142579|emb|CBI19782.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 338 bits (868), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/241 (72%), Positives = 199/241 (82%), Gaps = 8/241 (3%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
ME++Q N + NL+T KA+RSVWLMKCPL V+KS SS +SQPVAKV+LSLDPL+
Sbjct: 1 MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57
Query: 61 SD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
S+ +++FTME T + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKFD
Sbjct: 58 SEDPSALEFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFD 115
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
MKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK
Sbjct: 116 MKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKT 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N
Sbjct: 176 APVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 235
Query: 238 R 238
R
Sbjct: 236 R 236
>gi|359807121|ref|NP_001241605.1| uncharacterized protein LOC100788473 [Glycine max]
gi|255646380|gb|ACU23669.1| unknown [Glycine max]
Length = 262
Score = 338 bits (868), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 192/231 (83%), Gaps = 11/231 (4%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-----SMQFTM 68
NL+T KA+RSVWLMKCPLVVAKSWQ SQ P+AKV+LSLDPL + ++QFTM
Sbjct: 14 NLETTKAERSVWLMKCPLVVAKSWQAHPPSQ---PLAKVVLSLDPLHPEEDDPSAVQFTM 70
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEE 127
E ++++N PK+YSLNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EE
Sbjct: 71 EMAG--SEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEE 128
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKKK QPVKQ++ KR
Sbjct: 129 YGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKR 188
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 189 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 239
>gi|388521215|gb|AFK48669.1| unknown [Lotus japonicus]
Length = 258
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 8/230 (3%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQFTME 69
N++T+KA+RSVWLMKCP+VVAKSWQN S SQP++KV+LSLDPL + +QFTME
Sbjct: 9 NVETSKAERSVWLMKCPVVVAKSWQNHHPS-PSQPLSKVVLSLDPLLPEDDPSHLQFTME 67
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEEY 128
T ++++N PK+Y+LNMFKDFVPM VFSE++QG KVAMEGKVEHKFDMKPH +N+EEY
Sbjct: 68 MTG--SEAVNMPKTYALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEY 125
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
G+LCRERTNKSMIKNRQIQVIDND GV MRPMPGM+GL+SSNSKDKK+ QPVKQ++ KRT
Sbjct: 126 GKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKRTQPVKQSDTKRT 185
Query: 189 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
RRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 186 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 235
>gi|359492177|ref|XP_002279990.2| PREDICTED: transcription initiation factor IIF subunit beta [Vitis
vinifera]
Length = 260
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/242 (72%), Positives = 197/242 (81%), Gaps = 9/242 (3%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
ME++Q N + NL+T KA+RSVWLMKCPL V+KS SS +SQPVAKV+LSLDPL+
Sbjct: 1 MEEEQGNSSSS--NLETGKAERSVWLMKCPLAVSKS-WQSHSSSESQPVAKVVLSLDPLR 57
Query: 61 SDS----MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKF 116
S+ QFTME T + N PKSYSLNMFKDFVPM VFSE+NQG+VAMEGKVEHKF
Sbjct: 58 SEDPSALEQFTMEMTGTG--APNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKF 115
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
DMKPH +N+EEYG+LCRERTNKSMIKNRQIQVIDND GVHMRPMPGMVGLI+SNSKDKKK
Sbjct: 116 DMKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKK 175
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
PVK +++KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N
Sbjct: 176 TAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 235
Query: 237 LR 238
R
Sbjct: 236 KR 237
>gi|217075038|gb|ACJ85879.1| unknown [Medicago truncatula]
gi|388492442|gb|AFK34287.1| unknown [Medicago truncatula]
Length = 262
Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 187/230 (81%), Gaps = 10/230 (4%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQFTME 69
NL+T+KA+RSVWLMKCP+ VAKSWQN SQ P++KV+ S+DPL + +QFTME
Sbjct: 15 NLETSKAERSVWLMKCPVAVAKSWQNHPPSQ---PLSKVVFSIDPLLPEDDPAHLQFTME 71
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNMEEY 128
+ +++N PK+YSLNMFKDFVPM +FSE+++G KVAMEGKVEHKFDMKP +NM++Y
Sbjct: 72 MSGT--EAVNMPKTYSLNMFKDFVPMCIFSETSEGDKVAMEGKVEHKFDMKPRHENMDDY 129
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
G+LCRERT KSMIKNRQ+Q+I +D G HMRPMPGMVGL+SSN KDKK+ QPVKQT+ KRT
Sbjct: 130 GKLCRERTKKSMIKNRQVQIIADDRGTHMRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRT 189
Query: 189 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
RRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L N R
Sbjct: 190 RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKR 239
>gi|326493564|dbj|BAJ85243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/237 (64%), Positives = 183/237 (77%), Gaps = 7/237 (2%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQS--D 62
G+ L+TA+ADRSVWLMKCP VV+++WQ ASS D+ P VAKV+LSLDPL S
Sbjct: 2 GDEAKYLETARADRSVWLMKCPPVVSQAWQGASASSGDANPNPVVAKVVLSLDPLSSAEP 61
Query: 63 SMQFTMETTAVS-NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
S+QF ME + S + N PKSYSLNMFKDFVPM VFSE+NQGK++ EGKVEHKFDM+PH
Sbjct: 62 SLQFKMEMSQTSVASTCNLPKSYSLNMFKDFVPMCVFSETNQGKLSCEGKVEHKFDMEPH 121
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ N+ Y +LCRERT KSM+K R++QV+DNDHG+ MRPMPGMVGLISS+SK+K+K P K
Sbjct: 122 KDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISSSSKEKRKPTPTK 181
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
++VKRTRRDR ELE+I FKLFE+QPNWALK LVQETDQP + L L N R
Sbjct: 182 PSDVKRTRRDRRELENITFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKR 238
>gi|297842295|ref|XP_002889029.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334870|gb|EFH65288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 260
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/232 (64%), Positives = 174/232 (75%), Gaps = 10/232 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPLQSD-SMQF 66
LD K DR +WLMKCP+VVAK+W+ A S S +AKV+L +DPL+ D S +F
Sbjct: 7 LDMEKTDRRIWLMKCPVVVAKTWEKLAPSSSSYSSSDSLPNLAKVVLDVDPLRPDYSPEF 66
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
TM+ A N PK Y+LNMFKDFVPM FSE+N A+EG V+HKFDMKPH +N+E
Sbjct: 67 TMQMVAAEYG--NMPKCYALNMFKDFVPMEAFSETNLVNTAVEGNVDHKFDMKPHGENIE 124
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
EY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K PVKQTEVK
Sbjct: 125 EYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTEVK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
RTRRDRGELE IMFKLFE QPNW LKQLVQETDQPA + L L N R
Sbjct: 185 RTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKR 236
>gi|357133056|ref|XP_003568144.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 1 [Brachypodium distachyon]
Length = 261
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 179/231 (77%), Gaps = 7/231 (3%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQS--DSMQFTM 68
L+TA+ADRSVWLMKCP VV+++WQ ASS D P VAKV+LSLDPL S S++F M
Sbjct: 8 LETARADRSVWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPLSSAEPSIKFKM 67
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
E + + N PKSYSLNMFKDFVPM VFSE+NQGK++ EGKVEHKFDM+PH+ N+ Y
Sbjct: 68 EMAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCEGKVEHKFDMEPHKDNLINY 127
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI-SSNSKDKKKAQPVKQTEVKR 187
+LCRERT KSM+K R++QV+DNDHG+ MRP+PGMVGLI S +SK+K+K P K ++VKR
Sbjct: 128 AKLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPSGSSKEKRKPTPTKPSDVKR 187
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
TRRDR ELE+I+FKLFE+QPNWALK LVQETDQP + L L N R
Sbjct: 188 TRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKR 238
>gi|357133058|ref|XP_003568145.1| PREDICTED: transcription initiation factor IIF subunit beta-like
isoform 2 [Brachypodium distachyon]
Length = 279
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/249 (58%), Positives = 175/249 (70%), Gaps = 25/249 (10%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-QASSQDSQP---VAKVILSLDPLQSDS------- 63
L+TA+ADRSVWLMKCP VV+++WQ ASS D P VAKV+LSLDPL S
Sbjct: 8 LETARADRSVWLMKCPPVVSQAWQGASASSGDGNPNPVVAKVVLSLDPLSSAEPSIKART 67
Query: 64 --------------MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAME 109
+QF ME + + N PKSYSLNMFKDFVPM VFSE+NQGK++ E
Sbjct: 68 PPRRPRCSPPPTCLLQFGMEMAQTRDITCNLPKSYSLNMFKDFVPMCVFSEANQGKLSCE 127
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GKVEHKFDM+PH+ N+ Y +LCRERT KSM+K R++QV+DNDHG+ MRP+PGMVGLI S
Sbjct: 128 GKVEHKFDMEPHKDNLINYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPLPGMVGLIPS 187
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFL 229
S K+K P K ++VKRTRRDR ELE+I+FKLFE+QPNWALK LVQETDQP + L
Sbjct: 188 GSSKKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEIL 247
Query: 230 IPLHHINLR 238
L N R
Sbjct: 248 NDLCMYNKR 256
>gi|15222264|ref|NP_177683.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
gi|9369371|gb|AAF87120.1|AC006434_16 F10A5.27 [Arabidopsis thaliana]
gi|11692842|gb|AAG40024.1|AF324673_1 At1g75700 [Arabidopsis thaliana]
gi|11935195|gb|AAG42013.1|AF327423_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|12642908|gb|AAK00396.1|AF339714_1 putative transcription initiation factor [Arabidopsis thaliana]
gi|39545896|gb|AAR28011.1| TFIIF-beta 2 [Arabidopsis thaliana]
gi|110741044|dbj|BAE98616.1| putative transcription initiation factor [Arabidopsis thaliana]
gi|332197607|gb|AEE35728.1| transcription initiation factor TFIIF beta subunit [Arabidopsis
thaliana]
Length = 261
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/234 (62%), Positives = 172/234 (73%), Gaps = 11/234 (4%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN--------QASSQDSQPVAKVILSLDPLQSDSM- 64
NLD K+DRS+WLMKCP+VV K+W ASS +AK++ +DPL+ DS
Sbjct: 6 NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVREVDPLRDDSPP 65
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+F M V + N PK Y+LNMF DFVPM FS+ NQG A EGKV+HKFDMKP+ +
Sbjct: 66 EFKM--YMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDMKPYGET 123
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+EEY RLCRERT+K+M+KNRQIQVIDND GVHMRPMPGM+GL+SSNSK+K+K PVKQTE
Sbjct: 124 IEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPPPVKQTE 183
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPA + L L N R
Sbjct: 184 VKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKR 237
>gi|242091041|ref|XP_002441353.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
gi|241946638|gb|EES19783.1| hypothetical protein SORBIDRAFT_09g025080 [Sorghum bicolor]
Length = 267
Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 145/239 (60%), Positives = 179/239 (74%), Gaps = 17/239 (7%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASS----QDSQPV-AKVILSLDPLQSD------- 62
L+TA+ADRSVWLMKCP VV+++WQ ++S ++ PV AKV+LSLD L+ +
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASSSDPNNANPVVAKVVLSLDLLRPEEPPEDRP 67
Query: 63 ---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMK 119
++QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+
Sbjct: 68 EEPTLQFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDME 125
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
PH N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK P
Sbjct: 126 PHSDNLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQAP 185
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
K ++VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP + L L N R
Sbjct: 186 AKPSDVKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKR 244
>gi|115464811|ref|NP_001056005.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|48475207|gb|AAT44276.1| putative transcription initiation factor [Oryza sativa Japonica
Group]
gi|113579556|dbj|BAF17919.1| Os05g0509900 [Oryza sativa Japonica Group]
gi|215706385|dbj|BAG93241.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632183|gb|EEE64315.1| hypothetical protein OsJ_19152 [Oryza sativa Japonica Group]
Length = 259
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/232 (62%), Positives = 172/232 (74%), Gaps = 11/232 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQD---SQP---VAKVILSLDPLQSD--SMQF 66
L+TA+A+RSVWLMKCP VV+ +WQ SS D S P VAKV+LSLD L+S+ S+QF
Sbjct: 8 LETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRSEEPSLQF 67
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
ME ++ N PKSYSLNM KDFVPM VFSESNQGK++ EGKVEHKFDMKPH N+
Sbjct: 68 KMEM--AQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPHSDNLV 125
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
YG+LCRERT KSMIK R++QVI+ DH + + P+PGMVGLI S SK+KKK P K ++ K
Sbjct: 126 NYGKLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
R RRDR ELE+I+FKLFERQPNWALK LVQETDQP + L L N R
Sbjct: 185 RIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKR 236
>gi|226506332|ref|NP_001149812.1| LOC100283439 [Zea mays]
gi|195634813|gb|ACG36875.1| ATP binding protein [Zea mays]
gi|219888615|gb|ACL54682.1| unknown [Zea mays]
gi|413945986|gb|AFW78635.1| ATP binding protein [Zea mays]
Length = 269
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 177/241 (73%), Gaps = 19/241 (7%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPLQSD----- 62
L+TA+ADRSVWLMKCP VV+++WQ ++S S VAKV+LSLD L+ +
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASASSSDAANANPVVAKVVLSLDLLRPEERPEE 67
Query: 63 -----SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
++QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFD
Sbjct: 68 RPEEPTLQFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFD 125
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
M+PH N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK
Sbjct: 126 MEPHSDNLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQ 185
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
P K ++VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP + L L N
Sbjct: 186 APAKPSDVKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNK 245
Query: 238 R 238
R
Sbjct: 246 R 246
>gi|56785216|dbj|BAD82068.1| putative transcription initiation factor IIF beta subunit [Oryza
sativa Japonica Group]
Length = 277
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/248 (58%), Positives = 176/248 (70%), Gaps = 25/248 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP--------------------VAKVI 53
NL+TA+ADRSVWLMKCP VV+++WQ A++ S VAKVI
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVI 66
Query: 54 LSLDPLQSDS--MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGK 111
+SLDPL+S+ +QF ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGK
Sbjct: 67 VSLDPLRSEDQQLQFKMEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGK 124
Query: 112 VEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNS 171
V HKFDM+PH N+ YG+LCRERT KSMIKNR++ V+ ND+G+ MRP+PG+VGL+SS
Sbjct: 125 VGHKFDMEPHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGP 184
Query: 172 KDK-KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
K K KK PVK +++KRTRRDR ELE+I+FKLFERQPNW+LK L+QETDQP + L
Sbjct: 185 KQKEKKPLPVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILN 244
Query: 231 PLHHINLR 238
L N R
Sbjct: 245 DLCFYNKR 252
>gi|255587521|ref|XP_002534300.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
gi|223525544|gb|EEF28082.1| Transcription initiation factor IIF subunit beta, putative [Ricinus
communis]
Length = 278
Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 167/216 (77%), Gaps = 13/216 (6%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQD---SQPVAKVILSLDPLQSD----SMQ 65
G L+TA+A+++VWLMKCP +V+ S + SS D S+P+AKVILS++PL S+ S Q
Sbjct: 29 GTLETARAEKAVWLMKCPALVSNSLKKNPSSPDNDPSRPIAKVILSINPLNSNDDNSSRQ 88
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME N+S N PKSYS++M +DF+PM V SES QGKV++EGK+ +KFDM+PH +N+
Sbjct: 89 FTMELAG--NESGNAPKSYSMDMSEDFIPMFVLSESAQGKVSVEGKILYKFDMRPHTENL 146
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y ++CRERT K M K RQIQ+IDND+G HMRPMP M I+S S DKKK P K T+V
Sbjct: 147 ENYAKMCRERTKKYMTKGRQIQIIDNDNGSHMRPMPLM---IASGSNDKKKP-PAKATDV 202
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
KRTRRDRGE+E IMFKLFERQPNW L+QL+QETDQP
Sbjct: 203 KRTRRDRGEMEAIMFKLFERQPNWTLRQLIQETDQP 238
>gi|218197080|gb|EEC79507.1| hypothetical protein OsI_20575 [Oryza sativa Indica Group]
Length = 259
Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 172/238 (72%), Gaps = 11/238 (4%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQ-----DSQPV-AKVILSLDPLQSD 62
G L+TA+A+RSVWLMKCP VV+ +WQ SS + PV AKV+LSLD L+S+
Sbjct: 2 GEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSSAAGSNPNPVVAKVVLSLDLLRSE 61
Query: 63 --SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP 120
S+QF ME ++ N PKSYSLNM KDFVPM VFSESNQGK++ EGKVEHKFDMKP
Sbjct: 62 EPSLQFKMEM--AQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKP 119
Query: 121 HEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPV 180
H N+ YG+LCRERT KSMIK R++QVI+ DH + + P+PGMVGLI S SK+KKK P
Sbjct: 120 HSDNLVNYGKLCRERTQKSMIKTRKVQVIE-DHRMSLIPLPGMVGLIPSGSKEKKKQTPT 178
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
K ++ KR RRDR ELE+I+FKLFERQPNWALK LVQETDQP + L L N R
Sbjct: 179 KPSDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKR 236
>gi|219362667|ref|NP_001136767.1| hypothetical protein [Zea mays]
gi|194696976|gb|ACF82572.1| unknown [Zea mays]
gi|413949783|gb|AFW82432.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
gi|413949784|gb|AFW82433.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 272
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 178/235 (75%), Gaps = 13/235 (5%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-----VAKVILSLDPLQSD------S 63
L+TA+ADRSVWLMKCP VV+++WQ ++S VAKV+LSLD L+ + +
Sbjct: 17 LETARADRSVWLMKCPPVVSRAWQAASASSSDAANANPVVAKVVLSLDLLRQEERPEEPT 76
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+PH
Sbjct: 77 LQFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSD 134
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
N+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLISS+SK+KKK PVK +
Sbjct: 135 NLANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGIVGLISSSSKEKKKQAPVKPS 194
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
+ KRTRRDR E+E+++FKLFERQPNWALK LVQETDQP + L L N R
Sbjct: 195 DAKRTRRDRTEMENVIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKR 249
>gi|356511855|ref|XP_003524637.1| PREDICTED: general transcription factor IIF subunit 2-like [Glycine
max]
Length = 252
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 166/216 (76%), Gaps = 8/216 (3%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS----MQ 65
N G +DT+KA+R+VWLMKCP +V++S + S S+PVAKV++S+DPL S+ Q
Sbjct: 6 NSNGYVDTSKAERAVWLMKCPPLVSRSLR-APPSDPSRPVAKVVVSIDPLNSNDDDSPPQ 64
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FTME + P+ Y ++M KDF+PMSVFS++ QGK+++EGK+ +KFDM+PH + +
Sbjct: 65 FTMELAGTEAGHI--PRCYVMDMSKDFIPMSVFSDTPQGKISVEGKILNKFDMRPHNQTL 122
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E YG+LCRERTNK M+K+RQIQVIDND G HMRPMPGM+ +S +KKK+ P K T+
Sbjct: 123 ELYGKLCRERTNKYMVKSRQIQVIDNDSGAHMRPMPGMISFSTSGPSEKKKS-PAKATDT 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
KRTRRDRGE+E+I+FKLFERQPNW+L+ L+QETDQP
Sbjct: 182 KRTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQP 217
>gi|357136669|ref|XP_003569926.1| PREDICTED: transcription initiation factor IIF subunit beta-like
[Brachypodium distachyon]
Length = 261
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 168/218 (77%), Gaps = 13/218 (5%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQ-------DSQPV-AKVILSLDPLQSDS-- 63
+L+T +ADRSVWLMKCP +V+++WQ +++ + PV AKVILSLDPL SD
Sbjct: 7 HLETGRADRSVWLMKCPTIVSRAWQEASAASAAGGPKPNPNPVVAKVILSLDPLSSDDDP 66
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
QF ME N N+PKSYSLNMFKDFVPMSVFSESNQGK+A EGKVE+KFDM+PH +
Sbjct: 67 AQFKMEMAQTDNG--NKPKSYSLNMFKDFVPMSVFSESNQGKLACEGKVEYKFDMEPHRE 124
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
N+ +Y +LCRERT KSMIK R++ V++ D+G+ MRP+ ++ L + K+KKK+ P K +
Sbjct: 125 NLSDYAKLCRERTEKSMIKTRKVHVLEKDNGMGMRPLLNIISL-TPGLKEKKKSIPAKVS 183
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
++KRTRRDRGELE I+FKLFERQPNW+LK L+QETDQP
Sbjct: 184 DMKRTRRDRGELEIILFKLFERQPNWSLKHLMQETDQP 221
>gi|225449108|ref|XP_002274802.1| PREDICTED: general transcription factor IIF subunit 2 [Vitis
vinifera]
Length = 257
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 175/229 (76%), Gaps = 10/229 (4%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-----MQFT 67
N+DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL ++ QFT
Sbjct: 9 ANVDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLLANDDDDSPPQFT 68
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME +S N PK YS++M +DF+PM+VFSES+QG+ A+EGK+ +KFDMKPH +N++
Sbjct: 69 MELAGT--ESGNAPKCYSMDMSQDFIPMAVFSESSQGRTAVEGKILNKFDMKPHNENIQN 126
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERT+K M K+RQIQVIDND+G HMRPMPGMV I+S DKKK P K +++KR
Sbjct: 127 YGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMV--IASAVSDKKK-MPTKGSDMKR 183
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
TRRDRGE+E+I+FKLFERQPNW L+QL+QETDQP + L L N
Sbjct: 184 TRRDRGEMEEILFKLFERQPNWTLRQLIQETDQPEQFLKDLLKDLCVYN 232
>gi|296086049|emb|CBI31490.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 171/214 (79%), Gaps = 10/214 (4%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-----MQFT 67
N+DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL ++ QFT
Sbjct: 52 ANVDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLLANDDDDSPPQFT 111
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME +S N PK YS++M +DF+PM+VFSES+QG+ A+EGK+ +KFDMKPH +N++
Sbjct: 112 MELAGT--ESGNAPKCYSMDMSQDFIPMAVFSESSQGETAVEGKILNKFDMKPHNENIQN 169
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
YG+LCRERT+K M K+RQIQVIDND+G HMRPMPGMV I+S DKKK P K +++KR
Sbjct: 170 YGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMPGMV--IASAVSDKKK-MPTKGSDMKR 226
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
TRRDRGE+E+I+FKLFERQPNW L+QL+QETDQP
Sbjct: 227 TRRDRGEMEEILFKLFERQPNWTLRQLIQETDQP 260
>gi|125527873|gb|EAY75987.1| hypothetical protein OsI_03910 [Oryza sativa Indica Group]
gi|222619327|gb|EEE55459.1| hypothetical protein OsJ_03621 [Oryza sativa Japonica Group]
Length = 261
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/232 (57%), Positives = 166/232 (71%), Gaps = 9/232 (3%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS------MQFT 67
NL+TA+ADRSVWLMKCP VV+++WQ A++ S + + S++ +F
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKFK 66
Query: 68 METTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGKV HKFDM+PH N+
Sbjct: 67 MEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVGHKFDMEPHSDNLVN 124
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK-KKAQPVKQTEVK 186
YG+LCRERT KSMIKNR++ V+ ND+G+ MRP+PG+VGL+SS K K KK PVK +++K
Sbjct: 125 YGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPLPVKPSDMK 184
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
RTRRDR ELE+I+FKLFERQPNW+LK L+QETDQP + L L N R
Sbjct: 185 RTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDLCFYNKR 236
>gi|449452114|ref|XP_004143805.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 277
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 163/221 (73%), Gaps = 11/221 (4%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS------M 64
G L+T KADR++WL+KCP +V ++ N + S+PVAKVI+S+DPLQS+
Sbjct: 26 GTDFLETNKADRAMWLLKCPQLVTRALSNSPDAP-SRPVAKVIVSVDPLQSNDDDDSSST 84
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+FTME S DS N +SYSLNM DF+PMSVFSES+QGK +EGK+ +KFDMKPH++N
Sbjct: 85 EFTME--LASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQN 142
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+E YG+LCRERT+KSM K+RQIQVID+ G HMRPMPGM ++S + +KKK K +E
Sbjct: 143 LERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSE 200
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR R++RGELE I+FKLFERQP W KQL+QETDQP +
Sbjct: 201 TKRLRKERGELEKIIFKLFERQPYWTSKQLIQETDQPEQYM 241
>gi|294464268|gb|ADE77647.1| unknown [Picea sitchensis]
Length = 293
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/264 (50%), Positives = 164/264 (62%), Gaps = 45/264 (17%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM---------- 64
DT KADRSVWLMKCPLV+ ++W+ + S QP+AK+ +S+DP ++D
Sbjct: 12 FDTLKADRSVWLMKCPLVIGQAWKEISDS--GQPLAKITVSVDPCKADDQPIEAKVEDPT 69
Query: 65 -----------------------------QFTMETTAVSNDSLNRPKSYSLNMFKDFVPM 95
+F ME A N S+ PKSYSLNM + +PM
Sbjct: 70 APSATRRKVERQQMSSSRSQTQSTHRIKSEFMMEVAA--NGSVTAPKSYSLNMSTEIIPM 127
Query: 96 SVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV 155
+FSE+++GKVA++GKVEHKFDMKPH KN+++Y RLCRERTNKS K RQ+QVIDND G
Sbjct: 128 YIFSETSEGKVAVDGKVEHKFDMKPHTKNIDDYRRLCRERTNKSNFKARQVQVIDNDRGG 187
Query: 156 HMRPMPGMVGLISSNSKDKK-KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL 214
+ PM GM+ + SKDKK A PVK E+KRTR DRGELE+I+FKLFERQ NW LKQL
Sbjct: 188 Y-NPMQGMMDFSTILSKDKKGSAAPVKAQEMKRTRMDRGELENILFKLFERQSNWTLKQL 246
Query: 215 VQETDQPAVWFLIFLIPLHHINLR 238
V ETDQP + L L N R
Sbjct: 247 VTETDQPQQFIKEILNDLGLYNKR 270
>gi|413945985|gb|AFW78634.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 200
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
QF ME ++ N PKSYSLNMFKDFVPM VFSESNQGK++ EGKVEHKFDM+PH N
Sbjct: 6 QFKMEL--AQTNTGNTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGKVEHKFDMEPHSDN 63
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
+ YG+LCRERT K M+K+RQ+QV+DNDHG+ MRPMPG+VGLI S SK+KKK P K ++
Sbjct: 64 LANYGKLCRERTQKYMVKSRQVQVLDNDHGMSMRPMPGLVGLIPSGSKEKKKQAPAKPSD 123
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
VKRTRRDR E+E+I+FKLFERQPNWALK LVQETDQP + L L N R
Sbjct: 124 VKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKR 177
>gi|334185929|ref|NP_190795.3| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
gi|332645403|gb|AEE78924.1| Transcription initiation factor IIF, beta subunit [Arabidopsis
thaliana]
Length = 269
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 117/220 (53%), Positives = 156/220 (70%), Gaps = 14/220 (6%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQA-------SSQDSQPVAKVILSLDPL--QSDSMQ 65
L+T A+RS+ LMK P +VA S Q+ + +P AKVIL +DPL + + Q
Sbjct: 23 LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDEGTQ 82
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
F ME DS N P+ Y+L+M KDF+PM+VF ES+ GK+++EGK+++KFDM+PH +N+
Sbjct: 83 FVMELARA--DSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENI 140
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E YGRLCRERTNK M KNRQIQVIDN G+HMRPMPGM+ I + + +KKK + +E+
Sbjct: 141 ESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLTN-RTSEM 197
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP +
Sbjct: 198 KRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFL 237
>gi|297819938|ref|XP_002877852.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
gi|297323690|gb|EFH54111.1| hypothetical protein ARALYDRAFT_348323 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 156/214 (72%), Gaps = 8/214 (3%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDS-QPVAKVILSLDPL--QSDSMQFTMETT 71
L+T ADRS+ LMK P +VA S Q+ D +P AKVIL++D L + + +F ME
Sbjct: 18 LETGLADRSMLLMKAPSLVASSLQSLPFPDDPYRPDAKVILNVDLLAPEDEETKFVMELA 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRL 131
+S N P+ Y+L+M KDF+PM+VF ES+ GK+++EGK+++KFDM+PH +N+E YGRL
Sbjct: 78 RA--ESGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIESYGRL 135
Query: 132 CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRD 191
CRERTNK M KNRQIQVIDN G+HMRPMPGM+ I + + +KKK + +E+KRTRRD
Sbjct: 136 CRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLT-NRTSEMKRTRRD 192
Query: 192 RGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R E+E++MF LFERQ NW L+ L+QETDQP +
Sbjct: 193 RREMEEVMFNLFERQSNWTLRLLIQETDQPEQFL 226
>gi|224109724|ref|XP_002315290.1| predicted protein [Populus trichocarpa]
gi|222864330|gb|EEF01461.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 148/215 (68%), Gaps = 27/215 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQA-----SSQDSQPVAKVILSLDPLQSDSMQFT 67
G LD +KA++SVWLMKCP +V++ ++Q S PVAK FT
Sbjct: 33 GFLDASKAEKSVWLMKCPSIVSRFLRSQEHEVGDGDASSPPVAK--------------FT 78
Query: 68 METTAVS-NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
ME D L KSYS+ M KD V MSVFSES+QGK+++EG++ +KFD++PH +N+E
Sbjct: 79 MEMAGTGPGDGL---KSYSMEMSKDLVDMSVFSESSQGKLSVEGRILNKFDVRPHSENLE 135
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y ++CRERT K M+K+RQI+VIDND G HM PMPGM I S DKKK P+K +++K
Sbjct: 136 NYRKICRERTKKYMVKSRQIKVIDNDTGSHMMPMPGM---IISGLADKKKL-PIKASDMK 191
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
RTRRDR E+E IMFKLFE+QPNW LKQLVQETDQP
Sbjct: 192 RTRRDRREMEGIMFKLFEKQPNWTLKQLVQETDQP 226
>gi|168039739|ref|XP_001772354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676341|gb|EDQ62825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 142/215 (66%), Gaps = 10/215 (4%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV-AKVILSLDPLQ--SDSMQFTMETT 71
LDT AD+SVWL+K P +V W Q QD PV AKV +S+DPL SDS++F M T
Sbjct: 23 LDTTGADKSVWLLKVPPLVGHQWLKQ---QDGAPVLAKVTMSMDPLNPNSDSVEFMM--T 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHE-KNMEEYGR 130
D + KSY+LN+ KD VPM +FSE+ QGK+ +EGKVEHKFDMKP N +EY +
Sbjct: 78 LPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQGKLKVEGKVEHKFDMKPSNIGNNDEYRK 137
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
LCR+R NKSM+K R QV+ ND G MRP P + +S K + VK E KR RR
Sbjct: 138 LCRDRLNKSMVKTRTTQVLSNDRGGFMRP-PPIDAWPTSTKKKAPISSAVKAPEGKRIRR 196
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
DR ELE I+FKLFE++PNWALK LV+ETDQP +
Sbjct: 197 DRVELEAIVFKLFEQRPNWALKHLVEETDQPVAFL 231
>gi|255585869|ref|XP_002533609.1| ATP binding protein, putative [Ricinus communis]
gi|223526510|gb|EEF28778.1| ATP binding protein, putative [Ricinus communis]
Length = 139
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/131 (77%), Positives = 110/131 (83%), Gaps = 5/131 (3%)
Query: 27 MKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETTAVSNDSLNRPKSYS 85
MKCPLVVA+SW++ ASS DS PV KV+LSLDPL+SD S+QFTME N N PKSYS
Sbjct: 1 MKCPLVVARSWKSHASSSDSHPVDKVVLSLDPLRSDDSLQFTMEMAGTENG--NVPKSYS 58
Query: 86 LNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ 145
LNMFKDFVPMSVFSE+ QG+VAMEGKVEHKFDM PHE+N EEYG LCRERTNKSMIKNRQ
Sbjct: 59 LNMFKDFVPMSVFSETTQGRVAMEGKVEHKFDMNPHEENTEEYGSLCRERTNKSMIKNRQ 118
Query: 146 IQVIDNDHGVH 156
I IDND GVH
Sbjct: 119 I--IDNDRGVH 127
>gi|449521623|ref|XP_004167829.1| PREDICTED: general transcription factor IIF subunit 2-like [Cucumis
sativus]
Length = 190
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 119/152 (78%), Gaps = 2/152 (1%)
Query: 73 VSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLC 132
S DS N +SYSLNM DF+PMSVFSES+QGK +EGK+ +KFDMKPH++N+E YG+LC
Sbjct: 4 ASTDSGNALRSYSLNMSTDFIPMSVFSESSQGKFTIEGKILNKFDMKPHDQNLERYGKLC 63
Query: 133 RERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
RERT+KSM K+RQIQVID+ G HMRPMPGM ++S + +KKK K +E KR R++R
Sbjct: 64 RERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSETKRLRKER 121
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
GELE I+FKLFERQP W KQL+QETDQP +
Sbjct: 122 GELEKIIFKLFERQPYWTSKQLIQETDQPEQY 153
>gi|302795362|ref|XP_002979444.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
gi|300152692|gb|EFJ19333.1| hypothetical protein SELMODRAFT_111128 [Selaginella moellendorffii]
Length = 270
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 152/248 (61%), Gaps = 22/248 (8%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDS---------QPVAKVILSL 56
S +G LD A+A+ VWL+K P +VA +W Q SS S +AKV +
Sbjct: 2 SGADDGSVPLDVAQAEGQVWLLKLPAIVATAWNAQDSSGKSVAAGAGPADPTLAKVTCTF 61
Query: 57 DPLQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
DPL D +++FTME + + K+YSLN+ KD VP +FS++ QG++A+EGKVE
Sbjct: 62 DPLNPDPEAALEFTMELSGPDDI-----KAYSLNLQKDVVPTHIFSDT-QGRLAVEGKVE 115
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP-MPGMVGLISSNSK 172
KFD+KP+ K EEY +LCRER K +K R IQV+ +D G MRP +P + L SS
Sbjct: 116 RKFDIKPNSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQSSKDA 175
Query: 173 DKKKAQPV--KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
K+KA PV K + KRTRR+RGELED +FKLFE+Q NWALKQLVQ TDQP + L
Sbjct: 176 AKRKA-PVNAKNNDGKRTRRERGELEDHVFKLFEQQANWALKQLVQRTDQPVAFLKEILN 234
Query: 231 PLHHINLR 238
L N R
Sbjct: 235 DLCTYNKR 242
>gi|302792232|ref|XP_002977882.1| transcription factor [Selaginella moellendorffii]
gi|300154585|gb|EFJ21220.1| transcription factor [Selaginella moellendorffii]
Length = 262
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 152/248 (61%), Gaps = 22/248 (8%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDS---------QPVAKVILSL 56
S +G LD A+A+ VWL+K P +VA +W Q SS S +AKV +
Sbjct: 2 SGADDGSVPLDVAQAEGQVWLLKLPAIVATAWNAQDSSGKSVAAGAGPADPTLAKVTCTF 61
Query: 57 DPLQSD---SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
DPL D +++FTME + + K+YSLN+ KD VP +FS++ QG++A+EGKVE
Sbjct: 62 DPLNPDPEAALEFTMELSGPDDI-----KAYSLNLQKDVVPTHIFSDT-QGRLAVEGKVE 115
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP-MPGMVGLISSNSK 172
KFD+KP+ K EEY +LCRER K +K R IQV+ +D G MRP +P + L SS
Sbjct: 116 RKFDIKPNSKAREEYRQLCRERDRKFNMKTRTIQVLKDDRGNLMRPALPPTIMLQSSKDA 175
Query: 173 DKKKAQPV--KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
K+KA PV K + KRTRR+RGELED +FKLFE+Q NWALKQLVQ TDQP + L
Sbjct: 176 AKRKA-PVNAKNNDGKRTRRERGELEDHVFKLFEQQANWALKQLVQRTDQPVAFLKEILN 234
Query: 231 PLHHINLR 238
L N R
Sbjct: 235 DLCTYNKR 242
>gi|10045560|emb|CAC07918.1| putative protein [Arabidopsis thaliana]
Length = 376
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 127/181 (70%), Gaps = 23/181 (12%)
Query: 61 SDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQ----------------- 103
S ++QF ME DS N P+ Y+L+M KDF+PM+VF ES+
Sbjct: 155 SFALQFVMELARA--DSGNMPRRYTLDMSKDFIPMNVFCESSDDFGSLGEEFSIGMFIYS 212
Query: 104 -GKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPG 162
GK+++EGK+++KFDM+PH +N+E YGRLCRERTNK M KNRQIQVIDN G+HMRPMPG
Sbjct: 213 PGKMSVEGKIKNKFDMRPHNENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPG 272
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
M+ I + + +KKK + +E+KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP
Sbjct: 273 MI--IPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPE 329
Query: 223 V 223
V
Sbjct: 330 V 330
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQA-------SSQDSQPVAKVILSLDPL 59
L+T A+RS+ LMK P +VA S Q+ + +P AKVIL +DPL
Sbjct: 18 LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL 69
>gi|147863867|emb|CAN81117.1| hypothetical protein VITISV_005903 [Vitis vinifera]
Length = 584
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 145/233 (62%), Gaps = 40/233 (17%)
Query: 1 MEDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQ 60
M + SN+ N +DT++++R+VWLMKCP VV++S + ++S +PVAKVI+SLDPL
Sbjct: 1 MAEGSSNNAN----VDTSRSERAVWLMKCPPVVSRSLSSSSASDSLRPVAKVIVSLDPLL 56
Query: 61 S-------------------DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSES 101
+ D FTME +S N PK YS++M +DF+PM+VFSES
Sbjct: 57 ANDDDDSPPQGFMIAHEHAFDYELFTMELAG--TESGNAPKCYSMDMSQDFIPMAVFSES 114
Query: 102 NQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMP 161
+QG+ A+EGK+ +KFDMKPH +N++ YG+LCRERT+K M K+RQIQVIDND+G HMRPMP
Sbjct: 115 SQGRTAVEGKILNKFDMKPHNENIQNYGKLCRERTSKYMTKSRQIQVIDNDNGSHMRPMP 174
Query: 162 GMV--------------GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
GMV L N+K + + E KR R++ G L D+M
Sbjct: 175 GMVIASAVSQFLKDLLKDLCVYNNKGTNQGTYELKPEYKRKRKEIGIL-DLMI 226
>gi|168039837|ref|XP_001772403.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676390|gb|EDQ62874.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 118/221 (53%), Gaps = 46/221 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV-AKVILSLDPLQ--SDSMQFTMETT 71
LDT AD+SVWL+K P +V W Q QD PV AKV +S+DPL SDS++F M T
Sbjct: 23 LDTTGADKSVWLLKVPPLVGHQWLKQ---QDGAPVLAKVTMSMDPLNPNSDSVEFMM--T 77
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQ-------------------------GKV 106
D + KSY+LN+ KD VPM +FSE+ Q K+
Sbjct: 78 LPEKDLVAPHKSYNLNVTKDLVPMHIFSETTQEDEEAACGGVRIGKADVWKQTQACGWKL 137
Query: 107 AMEGKVEHKFDMKPHE-KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+EGKVEHKFDMKP N +EY +LCR+R NKSM+K R QV+ ND G MRP P +
Sbjct: 138 KVEGKVEHKFDMKPSNIGNNDEYRKLCRDRLNKSMVKTRTTQVLSNDRGGFMRPPP--ID 195
Query: 166 LISSNSKDKKKAQPVKQTEVK----------RTRRDRGELE 196
+++ K V+ + V+ R RRDRGE E
Sbjct: 196 AWPTSTFTGKGCSGVEWSGVEARVGVTRFEVRFRRDRGEAE 236
>gi|297720443|ref|NP_001172583.1| Os01g0772200 [Oryza sativa Japonica Group]
gi|255673728|dbj|BAH91313.1| Os01g0772200 [Oryza sativa Japonica Group]
Length = 138
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 87/130 (66%), Gaps = 24/130 (18%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP--------------------VAKVI 53
NL+TA+ADRSVWLMKCP VV+++WQ A++ S VAKVI
Sbjct: 7 NLETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKVI 66
Query: 54 LSLDPLQSDS--MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGK 111
+SLDPL+S+ +QF ME N N PKSYSLNMFKDFVPM VFSESNQGK++ EGK
Sbjct: 67 VSLDPLRSEDQQLQFKMEMAQTGNG--NTPKSYSLNMFKDFVPMCVFSESNQGKLSCEGK 124
Query: 112 VEHKFDMKPH 121
V HKFDM+PH
Sbjct: 125 VGHKFDMEPH 134
>gi|297819942|ref|XP_002877854.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323692|gb|EFH54113.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 130
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 22/120 (18%)
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+++EGK+++K+DM+PH +N+E Y VID+ G+HMRPMP M+
Sbjct: 1 MSVEGKIKNKYDMRPHNENIESY-------------------VIDDARGMHMRPMPEMI- 40
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
I + + +KKK + +E+KRTRRDR E+E++MF LFERQ NW L+ L+QETDQP +
Sbjct: 41 -IPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFL 98
>gi|308811420|ref|XP_003083018.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
gi|116054896|emb|CAL56973.1| putative transcription initiation factor (ISS) [Ostreococcus tauri]
Length = 347
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 22/222 (9%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM----QFTMET 70
LDT +AD + W++K P V++ + A++ P + + +D Q+D Q ME
Sbjct: 101 LDTKRADHAAWIIKVPKFVSRVLHDAAAANIQMPSMEDDMDVDMTQTDKTKAMTQGVMEL 160
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG-------KVAMEGKVEHKFDMKPHEK 123
T ++ + PK Y L +PM VFS+ +G + +E +++ K DM+P
Sbjct: 161 TG--KEAASVPKKYILANQATDMPMHVFSDVREGLKLGGHQDITLEARIDLKLDMRPSSI 218
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
+ +Y R+ +ER ++ K R V + + P+P L+ + A V
Sbjct: 219 DDVDYNRVSKERMEQAQTKTR---VTQSSSEMRFAPLPKRANLV------RFTADAVGAK 269
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K+ R ++ LE+++F LFE+QP W++KQL+ E+ QPA W
Sbjct: 270 TEKKERMEKKALENLLFGLFEKQPYWSMKQLLLESKQPADWL 311
>gi|224032837|gb|ACN35494.1| unknown [Zea mays]
Length = 107
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 60/67 (89%)
Query: 155 VHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQL 214
+ MRPMPG+VGLISS+SK+KKK PVK ++ KRTRRDR E+E+++FKLFERQPNWALK L
Sbjct: 1 MSMRPMPGIVGLISSSSKEKKKQAPVKPSDAKRTRRDRTEMENVIFKLFERQPNWALKAL 60
Query: 215 VQETDQP 221
VQETDQP
Sbjct: 61 VQETDQP 67
>gi|384254108|gb|EIE27582.1| winged helix DNA-binding domain-containing protein [Coccomyxa
subellipsoidea C-169]
Length = 189
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 81 PKSYSLNMFKD-FVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE-----YGRLCRE 134
P+++ L D F P VF++ QG+++ EG+V+ KFD+ + Y ++ R+
Sbjct: 2 PQAFDLTEQTDNFAPTLVFADL-QGRLSAEGRVKRKFDLVMKSSGDLDALDPAYRQINRD 60
Query: 135 RTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGE 194
R+ K+ K R +QV+ MRP G V +S +K+ + + K +R R ++ +
Sbjct: 61 RSAKAAAKTRTMQVLSEAPDTQMRP--GAVQRVSFGNKESTRKRFEKGQFERRARMEKDD 118
Query: 195 LEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
LE+++F+LFERQ W QL +ETDQPAVW L + +N R
Sbjct: 119 LENLLFRLFERQSRWNFIQLQKETDQPAVWLKEVLGEVAVLNKR 162
>gi|412985430|emb|CCO18876.1| predicted protein [Bathycoccus prasinos]
Length = 376
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 41/242 (16%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN-------------------QASSQDSQPVAKVILS 55
LDT +A+ WL+K P V ++W++ A D+ + KV +
Sbjct: 106 LDTQRANHRAWLVKVPNFVDRAWKSFSDRRSKADNENDEDGMDIDAELNDNDELGKVRVV 165
Query: 56 LDPLQSDSMQ-FTMETTAVSNDSLNR--PKSYSLNMFKDFVPMSVFSESNQGKVA----- 107
+DP ++ + F + A N+ P Y + + + VFSE+ +G A
Sbjct: 166 IDPFDKENKEAFAVTLNAAVNEDEEHEIPVKYIMTENIEAPEIHVFSETREGTAAATSAM 225
Query: 108 ------MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMP 161
+E KV K DM+P + + Y R+ + R K+ K+R +Q + + P+P
Sbjct: 226 DVNEFIVEAKVHKKLDMRPKDASDAAYARVSKNRLEKAQSKSRFVQSVVGADAARIAPLP 285
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
L+ + T+ K + ++ +L D +F LFER+ W+LKQL++ET QP
Sbjct: 286 KRSNLV--------RLADGGVTKPKAEKMEKAQLTDKLFGLFERRTFWSLKQLLEETKQP 337
Query: 222 AV 223
A+
Sbjct: 338 AM 339
>gi|145357023|ref|XP_001422722.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582965|gb|ABP01039.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 241
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS---------MQ 65
LDT + DR+ WL+K P V++ + A++ + D + D
Sbjct: 1 LDTTRGDRNAWLVKVPKFVSRVFHEAAAASKQAMADDDDMDTDTKEEDEPAIGTVRHMTH 60
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSE------SNQGKVAMEGKVEHKFDMK 119
ME T + + PK Y L +PM VFS+ S Q + +E KV+ K DM+
Sbjct: 61 AIMELTGKEANGV--PKQYILANQPSDMPMRVFSDVREGTTSGQADITLEAKVDLKLDMR 118
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
P + +Y R+ ++R ++ K R V + + P+P LI +
Sbjct: 119 PTSIDDVDYHRVSKDRMIQAQTKTR---VTQSSSEMRFAPLPKARNLI-------RFTDA 168
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ K+ R ++ LE+++F LFERQP W+LKQL+ ET QP W
Sbjct: 169 ASNKKEKKERMEKKALENVLFGLFERQPYWSLKQLILETKQPVDWL 214
>gi|328767698|gb|EGF77747.1| hypothetical protein BATDEDRAFT_20656 [Batrachochytrium
dendrobatidis JAM81]
Length = 299
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 27/234 (11%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDP-LQSDSMQFTMETTAVSND--S 77
D +VWL+K P +A+ W + + + +V + + +Q ++ + T+ + ++ S
Sbjct: 40 DNAVWLVKVPNFLAEKWMQIGFTHAGKDLGQVRIDKESTMQGNNPKVTLH---IPDEPWS 96
Query: 78 LNRPKSYSLNMFKDFVPMS--VFSESNQGK-VAMEGKVEHKFDMKP---HEKNMEEYGRL 131
+ PK+Y+L F + P + VF+E++QG+ V + G V+H+ + P + Y R+
Sbjct: 97 ADLPKNYNLK-FTNLAPKNEYVFTETSQGRAVGIAGIVQHEATVSPMVTDATHSAHYQRI 155
Query: 132 CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA--QPVKQTEV---- 185
++RT + +R +++ID + H R L+ S S D A + +KQ +
Sbjct: 156 MKKRTTTAATPSRVVKMIDENKTEHRR-------LMGSASSDTWNAGLEHIKQKKSSKSL 208
Query: 186 -KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
KR R R +L +++F LF P W K LV++T QP W L + +N R
Sbjct: 209 DKRERMTRSDLLNVLFPLFSGYPYWNFKGLVEQTKQPHAWLKEILAEVCILNKR 262
>gi|255585871|ref|XP_002533610.1| conserved hypothetical protein [Ricinus communis]
gi|223526511|gb|EEF28779.1| conserved hypothetical protein [Ricinus communis]
Length = 60
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/54 (75%), Positives = 44/54 (81%)
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
+KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA + L L+ N R
Sbjct: 1 MKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELYVYNKR 54
>gi|384498641|gb|EIE89132.1| hypothetical protein RO3G_13843 [Rhizopus delemar RA 99-880]
Length = 298
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 19 KADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLD---PLQSDSMQFTMETTAVSN 75
+AD VWL+K P +A++W+N QD+ + + + D P +S + + +++
Sbjct: 34 QADNKVWLVKVPKFLAETWKN--IDQDNVHLGSLRIYKDAQPPGKSSRISLVLPENTMTS 91
Query: 76 DSLNRPKSYSLNMFKDFVPMS-VFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE 134
+ PK YS+++ V VFS++ GK + G V H+ P E N Y + R+
Sbjct: 92 ---HIPKEYSISLLSAEVQNKFVFSQTEHGKT-ISGTVHHECVAVPTEANA--YRNIMRK 145
Query: 135 RTNKSMIKNRQIQVIDNDHGVHMRPM--PGMVGLISSN--SKDKKKAQPVKQTEVKRTRR 190
R ++ R QV+ G + +P+ PG + S+ S +P + K TR
Sbjct: 146 RVREAGTPQRTTQVL----GQNNQPVFVPGASSAVPSSDFSDFVTSKKPKTDNKEKATRM 201
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
R EL D++F F+R P W+ K +++ET QP+ + L + +N R
Sbjct: 202 PRNELMDLLFAAFDRYPYWSFKGILEETKQPSQYLKEILSEICILNKR 249
>gi|19111874|ref|NP_595082.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582884|sp|O94424.1|T2FB_SCHPO RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta
gi|7801320|emb|CAB91188.1| transcription factor TFIIF complex beta subunit Tfg2 (predicted)
[Schizosaccharomyces pombe]
Length = 307
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 21/243 (8%)
Query: 2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
EDD+ + + G+LD + VWL+K P + W N D+ + V +++
Sbjct: 12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
D +Q ++ + + D PK Y+L + FV S VF ES A+ G V H+
Sbjct: 64 DEIQLLLQNSPENADV---PKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
++ P ++Y R+ ++R + R++Q+ID+ G + PG +G S S + +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIR 176
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
+P +K +R R EL DI+FK FE W LK L + QP V+ L + +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236
Query: 236 NLR 238
N R
Sbjct: 237 NKR 239
>gi|328874575|gb|EGG22940.1| TFIIF subunit [Dictyostelium fasciculatum]
Length = 243
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPV----AKVILSLDPLQSDSMQFTMET 70
L+T A+ WL+K P + W ++ + + + + + L++ +++ +F + T
Sbjct: 13 LNTDNAENQAWLVKVPKFLVDHWMSRGADAEIGKLYFKSSNLSLTISGTTNENEEFQLAT 72
Query: 71 TAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGR 130
T V + P+ +FSE + +A+EG V K D++ + + + Y
Sbjct: 73 TPVIESN----------------PLKIFSEDKENALALEGSVGLKCDIRMN-VDSKGYRE 115
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMR---PMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
LCR R+ K RQ + ++ + P+ V +++ K KK+ E KR
Sbjct: 116 LCRGRSESYNTKTRQSKTLEGHQTSIFKNHNPIKPTVSTLAAVMKTKKQ-------EDKR 168
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R EL D++F LFE + W LK L+ T+QP W
Sbjct: 169 ERMAEDELVDLLFHLFEEKTYWDLKSLISRTEQPQAWL 206
>gi|213410311|ref|XP_002175925.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
gi|212003972|gb|EEB09632.1| transcription initiation factor IIF subunit beta
[Schizosaccharomyces japonicus yFS275]
Length = 298
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 19/242 (7%)
Query: 3 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD 62
+++ + + G+LDT+ VWL+K P + W + + L + +D
Sbjct: 8 EEEDKYEDETGDLDTSGIASRVWLVKLPKFLLDKWNSIPPDHAAD------LGCVRVMND 61
Query: 63 SMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSE----SNQGKVAMEGKVEHKFD 117
+Q + +A ++++ PK Y+L + +V S VF E S + A+ G V H+ +
Sbjct: 62 EIQLLLRDSA---ENMDVPKEYNLKVMNKYVRNSYVFREFEQPSGSKQTALVGTVAHECN 118
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKKK 176
+ P ++Y R+ +R + R++Q+ID+ G + PG +G S S + +
Sbjct: 119 VSPVIN--DDYRRVMHKRALAASAPRRRVQMIDDRGGSLL--APGTLGARSRSTTSFIRN 174
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
+P +K R R EL DI+FK FE W LK L + QP V+ L + +N
Sbjct: 175 VKPRTGEVLKNARIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAVLN 234
Query: 237 LR 238
R
Sbjct: 235 KR 236
>gi|196011287|ref|XP_002115507.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
gi|190581795|gb|EDV21870.1| hypothetical protein TRIADDRAFT_59521 [Trichoplax adhaerens]
Length = 256
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 52/239 (21%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM 68
+GK ++D + AD+SVWL+K P V+++WQ S + V V I P ++ M F +
Sbjct: 3 DGKESVDVSSADQSVWLLKVPKFVSQAWQKSESGK----VGSVKIQKKGP--NEEMLFLL 56
Query: 69 E---TTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAME---------------- 109
E TTA S+ N P Y L V +E Q +VA++
Sbjct: 57 ENSLTTATSSGEANIPTEYKL----------VSNECGQYQVALKRSLSIDNAADSSTEPE 106
Query: 110 --GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
GKV K D++ + M Y L R +T + RQ + + + RP+ V L
Sbjct: 107 IVGKVVRKIDLRALNERM--YLNLKRRKTELAKSPRRQPKFLSQVVNTY-RPVSDHVEL- 162
Query: 168 SSNSKDKKKAQPV-KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
PV K+ E KR R DR +++++F FE+ ++LK L T QP ++
Sbjct: 163 ---------RVPVQKKEEGKRARADRDHVKEMLFAAFEKHQYYSLKSLADITQQPVMYL 212
>gi|255087202|ref|XP_002505524.1| predicted protein [Micromonas sp. RCC299]
gi|226520794|gb|ACO66782.1| predicted protein [Micromonas sp. RCC299]
Length = 417
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 74/290 (25%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--------------------QDSQPVAKV 52
G LDT + + WL+K P V ++W+ + + D + + ++
Sbjct: 128 GCLDTQRGEHLAWLVKVPAFVTRAWRAASDALDEVSELDGGVGTEIDGGKVDDKELLGRM 187
Query: 53 ILSLDPLQSDSMQ----FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQG---- 104
+++DP + T+E + + + PK Y + M D P+ VFS+ +
Sbjct: 188 RMTVDPFAPPEKRQRHFLTLEDNVSAANRI--PKEYDMVMTPDDQPIHVFSDVRENTAAA 245
Query: 105 -----------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
+ +EG V KFD++P E Y R
Sbjct: 246 AARAAARLAAERALAGRGSGENQLSLPHDEFVLEGAVSEKFDVRPASVTDEAYRATHLRR 305
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMP---GMVGLISSNSKDKKKAQPVKQTEVKRTRRDR 192
++ K R + + P+P + + K+KA+ R ++
Sbjct: 306 IEEATKKTRVMGDVKGPQ--RTVPLPKARNITQRLDGKEDVKEKAE----------RLEK 353
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRCFST 242
LED + LFERQ W+ KQLV ET QPAVW L L +N R +T
Sbjct: 354 PLLEDRLMGLFERQSLWSFKQLVAETRQPAVWLKEVLTELAVLNRRGPNT 403
>gi|239790566|dbj|BAH71836.1| ACYPI008218 [Acyrthosiphon pisum]
Length = 257
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETT 71
G+LD +KA ++WL+K P VA W N S D + KV ++ + D S+ +
Sbjct: 4 GSLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKI-KVTNTIPGKRPDISLHLSEAVL 62
Query: 72 AVSNDSLNRP--KSYSLNMFK--------------DFVPMSVFSESNQGKVAMEGKVEHK 115
+ + N P KS+ L++ + P +V E++ ++A+ GK+ K
Sbjct: 63 CLDGEKSNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETD--RLAILGKISQK 120
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P + Y L ++ K+ I RQ+Q +D + +P+ I N K
Sbjct: 121 LECRPIGDQV--YMDLKKQAIRKAHIPTRQVQKLDKV-VQNFKPISDHKHNIEYNEK--- 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
K++E K+ R D+ + ++FK FE+ + +K LV T QP V+ L + +
Sbjct: 175 -----KKSEGKKARDDKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNY 229
Query: 236 NLR 238
NL+
Sbjct: 230 NLK 232
>gi|193620369|ref|XP_001951556.1| PREDICTED: general transcription factor IIF subunit 2-like
[Acyrthosiphon pisum]
Length = 257
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETT 71
G+LD +KA ++WL+K P VA W N S D + KV ++ + D S+ +
Sbjct: 4 GSLDVSKAGNALWLVKVPKYVADKWDNAPGSLDVGKI-KVTNTIPGKRPDISLHLSEAVL 62
Query: 72 AVSNDSLNRP--KSYSLNMFK--------------DFVPMSVFSESNQGKVAMEGKVEHK 115
+ + N P KS+ L++ + P +V E++ ++A+ GK+ K
Sbjct: 63 CLDGEKNNEPIPKSFKLDVSHFTSQTMVALSEHRMSYNPDAVVQETD--RLAILGKISQK 120
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P + Y L ++ K+ I RQ+Q +D + +P+ I N K
Sbjct: 121 LECRPIGDQV--YMDLKKQAIRKAHIPTRQVQKLDKV-VQNFKPISDHKHNIEYNEK--- 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
K++E K+ R D+ + ++FK FE+ + +K LV T QP V+ L + +
Sbjct: 175 -----KKSEGKKARDDKDAVMAMLFKAFEKHQYYNIKDLVTLTKQPVVYLKEILKEVCNY 229
Query: 236 NLR 238
NL+
Sbjct: 230 NLK 232
>gi|281210350|gb|EFA84517.1| TFIIF subunit [Polysphondylium pallidum PN500]
Length = 258
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 24/222 (10%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G ++T + WL+K P +A W + + K+ S+++ ++
Sbjct: 11 GEINTDNVETQAWLIKVPKHLADHWMTAGGGTE---IGKLFFK----SSNNLSLSINFKD 63
Query: 73 VSNDSLNRPKSYSLNM----FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
N++ P S L + D P+ +FSE + ++ EG + + D++ + + Y
Sbjct: 64 KENNNGYVP-SEELQLVTTPLPDSNPIKIFSEDTENALSFEGSIGLRCDVR-MDLSSPAY 121
Query: 129 GRLCRERTNKSMIKNRQIQVID-ND----HGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
L + RT K RQ + I+ ND H V+ P V + +K K K+Q
Sbjct: 122 RELMKSRTTSYNTKTRQSKTIEANDRSQLHRVYSNPAKIAVS-TTVYTKPKGKSQ----- 175
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
E KR R +L D++FK F + W LK LV TDQP VW
Sbjct: 176 EDKRERMQEEDLIDLIFKAFGEKQYWLLKDLVAYTDQPQVWL 217
>gi|126337679|ref|XP_001363893.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 249
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 22/236 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S F+ ++VF+ES+ K+++EG V + + +P
Sbjct: 61 ELANIHDIGGKPASVSAPREHPFLLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N ++ + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKAVTTNFKPV--------ANHQNNIEYEKKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
+ KR R D+ ++ D++F FE+ + +K LV T QP ++ L + N++
Sbjct: 171 EDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVK 226
>gi|260800648|ref|XP_002595210.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
gi|229280454|gb|EEN51222.1| hypothetical protein BRAFLDRAFT_100378 [Branchiostoma floridae]
Length = 249
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 30/236 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSL--DPLQSDS 63
LD + ++WL+K P ++ W + + + P +VI SL D Q D
Sbjct: 8 LDCKGSSNNLWLVKVPKYMSNKWMTVEDGEVGTLKINRRPGAPKPEVIFSLKEDLAQRDD 67
Query: 64 MQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+ N R + L+ PM VFS+++ G +A+EGKV H+ D +P
Sbjct: 68 GK--------GNSEAPREHKFVLSGTAG-QPMGVFSQTSTGALALEGKVAHRVDCRP--V 116
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
E Y +L R + +M R +D + +P+ +N + + + K+
Sbjct: 117 GGEHYMKLKRLQVLDAMTPMRTTMALDRAVTNNYKPV--------ANHANNLEIERRKKE 168
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLRC 239
+ KR R D ++++++F FE+ + +K LV+ T QP + L + NL+
Sbjct: 169 DGKRARADPEKVQEMLFSAFEKHQYYNIKDLVEITKQPIQYLKEVLKEIATYNLKA 224
>gi|195499852|ref|XP_002097123.1| GE24669 [Drosophila yakuba]
gi|194183224|gb|EDW96835.1| GE24669 [Drosophila yakuba]
Length = 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEG 110
P + + ++ + V+ +L +F P S S+ + K+ MEG
Sbjct: 75 PEEKIPTEHVLDVSQVTKQTLG--------VFSHMAPSDGKENSTSSASQPDNEKLYMEG 126
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P N Y +L E K+ R++Q ID + +P+ I
Sbjct: 127 RIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEY- 182
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
+++KKA E K+ R D+ + D++F FE+ + +K LV+ T+QP + L
Sbjct: 183 -RERKKA------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
Query: 231 PLHHINLR 238
+ N++
Sbjct: 236 DVCDYNMK 243
>gi|62901918|gb|AAY18910.1| RAP30 [synthetic construct]
Length = 273
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 5 QSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM 64
Q + G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ +
Sbjct: 23 QGSAERGELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-V 78
Query: 65 QFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKF 116
FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 79 SFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRA 138
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ +P E Y RL R + +S R Q +D + +P+ +N + +
Sbjct: 139 ECRPAAS--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIE 188
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ K+ + KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 189 YERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 237
>gi|226503|prf||1515353A transcription initiation factor RAP30
Length = 234
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|450771|gb|AAA81888.1| dTFIIF30 [Drosophila melanogaster]
Length = 276
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDF-VPMSVFSESNQGKVAMEGKVEHKF 116
P + + ++ + V+ +L +++ M + +P S+ K+ MEG++ K
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRR---HSDNEKLYMEGRIVQKL 131
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ +P N Y +L E K+ R++Q ID + +P+ I +
Sbjct: 132 ECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKI-VQNFKPVKDHAHNIEYRER---- 184
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +
Sbjct: 185 ----KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYL 229
>gi|344281782|ref|XP_003412656.1| PREDICTED: general transcription factor IIF subunit 2-like
[Loxodonta africana]
Length = 249
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|296203835|ref|XP_002749072.1| PREDICTED: general transcription factor IIF subunit 2 [Callithrix
jacchus]
gi|403286252|ref|XP_003934413.1| PREDICTED: general transcription factor IIF subunit 2 [Saimiri
boliviensis boliviensis]
Length = 249
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|4758488|ref|NP_004119.1| general transcription factor IIF subunit 2 [Homo sapiens]
gi|114651459|ref|XP_001154142.1| PREDICTED: uncharacterized protein LOC741868 [Pan troglodytes]
gi|297693990|ref|XP_002824282.1| PREDICTED: general transcription factor IIF subunit 2 [Pongo
abelii]
gi|397472363|ref|XP_003807716.1| PREDICTED: general transcription factor IIF subunit 2 [Pan
paniscus]
gi|426375361|ref|XP_004054510.1| PREDICTED: general transcription factor IIF subunit 2 [Gorilla
gorilla gorilla]
gi|464519|sp|P13984.2|T2FB_HUMAN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=General transcription factor IIF 30 kDa subunit;
AltName: Full=Transcription initiation factor IIF
subunit beta; Short=TFIIF-beta; AltName:
Full=Transcription initiation factor RAP30
gi|35865|emb|CAA34775.1| 30kb subunit of RAB30 /74 [Homo sapiens]
gi|35867|emb|CAA42419.1| RAP30 [Homo sapiens]
gi|12804689|gb|AAH01771.1| General transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|54695920|gb|AAV38332.1| general transcription factor IIF, polypeptide 2, 30kDa [Homo
sapiens]
gi|61356697|gb|AAX41274.1| general transcription factor IIF polypeptide 2 [synthetic
construct]
gi|119629133|gb|EAX08728.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|119629134|gb|EAX08729.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_c [Homo sapiens]
gi|158256522|dbj|BAF84234.1| unnamed protein product [Homo sapiens]
gi|190689903|gb|ACE86726.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|190691275|gb|ACE87412.1| general transcription factor IIF, polypeptide 2, 30kDa protein
[synthetic construct]
gi|261859240|dbj|BAI46142.1| general transcription factor IIF, polypeptide 2, 30kDa [synthetic
construct]
gi|410217096|gb|JAA05767.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410248632|gb|JAA12283.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410288620|gb|JAA22910.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
gi|410336085|gb|JAA36989.1| general transcription factor IIF, polypeptide 2, 30kDa [Pan
troglodytes]
Length = 249
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|194902220|ref|XP_001980647.1| GG17267 [Drosophila erecta]
gi|190652350|gb|EDV49605.1| GG17267 [Drosophila erecta]
Length = 277
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEG 110
P + + ++ + V+ +L +F P S ++ + K+ MEG
Sbjct: 75 PEEKIPTEHVLDVSQVTKQTLG--------VFSHMAPSDGKENSTSSAAQPDNEKLYMEG 126
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P N Y +L E K+ R++Q ID + +P+ I
Sbjct: 127 RIVQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEYR 183
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
+ K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L
Sbjct: 184 ER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
Query: 231 PLHHINLR 238
+ N++
Sbjct: 236 DVCDYNMK 243
>gi|357622901|gb|EHJ74261.1| putative Transcription initiation factor IIF subunit beta [Danaus
plexippus]
Length = 271
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 42/245 (17%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + R VWL+K P +A W + + V K+ +S P Q +Q ++ +
Sbjct: 14 LDLSNTGRGVWLVKVPKYIANKWDKASGDIE---VGKLKISRVPGQRAQVQLSLSEAVLC 70
Query: 75 NDSLNRPKSY----------------SLNMFKDFVPM---SVFSESNQGKVAMEGKVEHK 115
LN P SL +F VP +V ES K+ MEG++ K
Sbjct: 71 ---LNEPGEQALPKEHRLDVSNVTRQSLGVFSHAVPSNTDTVVPESE--KLYMEGRIVQK 125
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV--HMRPMPGMVGLISSNSKD 173
+ KP+ Y +L E K+++ RQ+Q + G+ + +P+ S+ K
Sbjct: 126 LECKPYADPT--YYKLKSESIRKALMPQRQVQQLK---GIVQNFKPV--------SDHKH 172
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
Q K+ E K+ R D+ + +++F FE+ + +K L T QP V+ L +
Sbjct: 173 NIDYQVKKKAEGKKARDDKESVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVC 232
Query: 234 HINLR 238
+ NL+
Sbjct: 233 NYNLK 237
>gi|195330041|ref|XP_002031717.1| GM26151 [Drosophila sechellia]
gi|194120660|gb|EDW42703.1| GM26151 [Drosophila sechellia]
Length = 277
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 32/243 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A R VWL+K P +A+ W+ ++ D V K+ ++ P Q + ++ T +
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMD---VGKLRINKTPGQKAQVSLSLTTAVL 71
Query: 74 SND-----------SLNRPKSYSLNMFKDFVP-------MSVFSESNQGKVAMEGKVEHK 115
+ D +++ +L +F P + ++ + K+ MEG++ K
Sbjct: 72 ALDPDEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNEKLYMEGRIVQK 131
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P N Y +L E K+ R++Q ID + +P+ I +
Sbjct: 132 LECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKI-VQNFKPVKDHAHNIEYRER--- 185
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L +
Sbjct: 186 -----KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDY 240
Query: 236 NLR 238
N++
Sbjct: 241 NMK 243
>gi|149730248|ref|XP_001491541.1| PREDICTED: general transcription factor IIF subunit 2-like [Equus
caballus]
Length = 249
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP ++
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVLYL 213
>gi|24645751|ref|NP_524305.2| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|1729817|sp|P41900.2|T2FB_DROME RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase TfIIF-beta; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|806871|gb|AAA86888.1| initiation factor TFIIF small subunit [Drosophila melanogaster]
gi|7299356|gb|AAF54548.1| transcription factor TFIIFbeta [Drosophila melanogaster]
gi|17946191|gb|AAL49136.1| RE56801p [Drosophila melanogaster]
gi|220942436|gb|ACL83761.1| TfIIFbeta-PA [synthetic construct]
gi|220952660|gb|ACL88873.1| TfIIFbeta-PA [synthetic construct]
Length = 277
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 28/241 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP + L + N+
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 R 238
+
Sbjct: 243 K 243
>gi|388454665|ref|NP_001253640.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|402901916|ref|XP_003913880.1| PREDICTED: general transcription factor IIF subunit 2 [Papio
anubis]
gi|380786557|gb|AFE65154.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|383413475|gb|AFH29951.1| general transcription factor IIF subunit 2 [Macaca mulatta]
gi|384946658|gb|AFI36934.1| general transcription factor IIF subunit 2 [Macaca mulatta]
Length = 249
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP-- 118
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q ++ + +P+ +N + + + K+
Sbjct: 119 AASENYMRLKRLQIEESSKPVRLSQQLEKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>gi|417397839|gb|JAA45953.1| Putative proteinral transcription factor iif polypeptide 2 30kda
[Desmodus rotundus]
Length = 249
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + RP+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYRPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|195571933|ref|XP_002103955.1| GD20705 [Drosophila simulans]
gi|194199882|gb|EDX13458.1| GD20705 [Drosophila simulans]
Length = 277
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 28/241 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PDEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSTAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP + L + N+
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 R 238
+
Sbjct: 243 K 243
>gi|291392998|ref|XP_002713006.1| PREDICTED: general transcription factor IIF, polypeptide 2, 30kDa
[Oryctolagus cuniculus]
Length = 249
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKIVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ ++ D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|84000109|ref|NP_001033153.1| general transcription factor IIF subunit 2 [Bos taurus]
gi|426236297|ref|XP_004012106.1| PREDICTED: general transcription factor IIF subunit 2 [Ovis aries]
gi|118573901|sp|Q2T9L9.1|T2FB_BOVIN RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|83405774|gb|AAI11361.1| General transcription factor IIF, polypeptide 2, 30kDa [Bos taurus]
gi|296481803|tpg|DAA23918.1| TPA: general transcription factor IIF subunit 2 [Bos taurus]
Length = 249
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 N--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYL 213
>gi|449662180|ref|XP_002160344.2| PREDICTED: general transcription factor IIF subunit 2-like [Hydra
magnipapillata]
Length = 265
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
+D +A +SVWL+K P +A W D+ + + M F + V
Sbjct: 18 VDCTRAGQSVWLVKVPKYIADIW----GKADASGIVGSLKIPKHTAPKHMLFELSDHLVK 73
Query: 75 NDS--LNRPKSYSLNMFKDFVPMSVFSESN----------QGKVAMEGKVEHKFDMKPHE 122
+ + + P + M + VFSE++ + K+A EGK+ + D +P E
Sbjct: 74 SQAQGIEIPSKHKFEMSDIWQTFGVFSETSCDDEDANEQAREKIAFEGKIIKRADCRPIE 133
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVID---------NDHGVHMRPMPGMVGLISSNSKD 173
Y ++ R+ K+ RQ++ I NDH ++M P+
Sbjct: 134 D--PNYMQMKRKAIEKACRPVRQVKQITGLVTTFKPVNDHQINMEPI------------- 178
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
KK+ + E KR R +R E+ +++F FE+ + LK LV T QP V L +
Sbjct: 179 KKRKE-----EGKRVRAERDEVLEVLFSAFEKHQFYTLKDLVGITQQPVVHLKAILRDVC 233
Query: 234 HINLR 238
+ NL+
Sbjct: 234 NYNLK 238
>gi|332376103|gb|AEE63192.1| unknown [Dendroctonus ponderosae]
Length = 265
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 40/245 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A+R VWL+K P VA W+ + + V K+ ++ Q + T+ + A+
Sbjct: 10 DLDLSNANRGVWLVKVPKYVANRWEKAPNEME---VGKLKITKQQGQKPQVSLTL-SPAI 65
Query: 74 SNDSLNRPKSYS----------------LNMFKDFVPM---SVFSESNQGKVAMEGKVEH 114
N LN P S L +F +P SV E+ K+ MEGK+
Sbjct: 66 LN--LNEPGEESIPKDHRLDVSTVTQQTLGVFSHVIPEKSDSVVPETE--KLHMEGKIVQ 121
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKD 173
K + +P+ Y +L E K+ + R+++ +D VH +P+ S+ K+
Sbjct: 122 KLECRPYADTC--YMKLKLESIRKASLPTRKVKQLDR--VVHSYKPV--------SDHKN 169
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
+ K+ E K+ R D+ + +++F FE+ + +K LV+ T QP + L +
Sbjct: 170 NIEYMERKKAEGKKARDDKDSVLEMLFSAFEKHQYYNIKDLVKITRQPITYLKEILKEVC 229
Query: 234 HINLR 238
+ NL+
Sbjct: 230 NYNLK 234
>gi|354476267|ref|XP_003500346.1| PREDICTED: general transcription factor IIF subunit 2-like
[Cricetulus griseus]
gi|344240972|gb|EGV97075.1| General transcription factor IIF subunit 2 [Cricetulus griseus]
Length = 249
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|301758318|ref|XP_002915010.1| PREDICTED: general transcription factor IIF subunit 2-like
[Ailuropoda melanoleuca]
gi|345788533|ref|XP_851466.2| PREDICTED: general transcription factor IIF subunit 2 [Canis lupus
familiaris]
gi|410947437|ref|XP_003980453.1| PREDICTED: general transcription factor IIF subunit 2 [Felis catus]
Length = 249
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|343791023|ref|NP_001230557.1| general transcription factor IIF, polypeptide 2, 30kDa [Sus scrofa]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 ELANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQYVLDMLFSAFEKHQYYNLKDLVDITKQPVSYL 213
>gi|340370336|ref|XP_003383702.1| PREDICTED: general transcription factor IIF subunit 2-like
[Amphimedon queenslandica]
Length = 256
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 25/221 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQF-----TM 68
+L+T+ A R VWL+K P V++ W+ ++ Q + ++ ++ +P S ++QF +
Sbjct: 16 SLNTSNASRGVWLVKVPNYVSERWKK---AKKDQELGRMRITRNPNNSTTVQFFLAPELL 72
Query: 69 ETTAVSNDSLNRPKSYSLNMFKD-FVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNME 126
E PK + +N+ + +SVF+ES G + +EGK+ + +++P + ++
Sbjct: 73 EVKMEDGTVTQLPKDHRVNLQETKHQSLSVFTESQSGGDLVIEGKISQRAEIQPVDSSI- 131
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDH--GVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
Y L K QIQ + H+ +P + +A K+ E
Sbjct: 132 -YMSL----------KKHQIQQAEKTKFTASHLNELPSH-SYKPVAYHPEHEAIERKKKE 179
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K+ R D+ + D++F F+R + K LV T QPA +
Sbjct: 180 PKKARDDKNVVFDLLFSAFQRHQYYTFKDLVDITQQPATYL 220
>gi|395834851|ref|XP_003790402.1| PREDICTED: general transcription factor IIF subunit 2 [Otolemur
garnettii]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSTDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|194741034|ref|XP_001952994.1| GF17437 [Drosophila ananassae]
gi|190626053|gb|EDV41577.1| GF17437 [Drosophila ananassae]
Length = 281
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 34/246 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLN-----RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKV 112
P + + ++ + V+ +L + N K+ S++ K+ MEG++
Sbjct: 75 PEEKIPTEHVLDVSQVTKQTLGVFSHMSQAEMAANNGKENSTAPALSDNE--KLYMEGRI 132
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P N Y +L E K+ R++Q ID + +P+ I +
Sbjct: 133 VQKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NFKPVKDHAHNIEYRER 189
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPL 232
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L +
Sbjct: 190 --------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 233 HHINLR 238
N++
Sbjct: 242 CDYNMK 247
>gi|195055594|ref|XP_001994698.1| GH14638 [Drosophila grimshawi]
gi|193892461|gb|EDV91327.1| GH14638 [Drosophila grimshawi]
Length = 287
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 40/251 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A R VWL+K P +A+ W+ ++ D V K+ +S P Q + ++ +
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMD---VGKLRISKTPGQKAQVSLSLTPAVL 71
Query: 74 SND-----------SLNRPKSYSLNMFKDFVPMSVFSESNQGK---------------VA 107
+ D +++ +L +F P + S+ GK +
Sbjct: 72 ALDPDEKIPTEHVLDVSQVTKQTLGVFSHMTPTEAAAGSSNGKENGAAGASATPDSEKLY 131
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
MEG++ K + +P Y +L E K+ R++Q ID + +P+ I
Sbjct: 132 MEGRIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNYKPVKDHAHNI 188
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
+ K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +
Sbjct: 189 EYRER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKE 240
Query: 228 FLIPLHHINLR 238
L + N++
Sbjct: 241 ILKDVCDYNMK 251
>gi|348681790|gb|EGZ21606.1| hypothetical protein PHYSODRAFT_354403 [Phytophthora sojae]
Length = 249
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSM------QFTMETTAVS 74
DR V+L K P + SW+N S+ ++L L+ S+ T+ + +
Sbjct: 17 DREVYLAKIPTALGASWKNVQESE-------LMLGSIKLEKKSVLGRRKGMLTVNPSTLE 69
Query: 75 NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE 134
+D P Y + + + + + VFS G++A+EG V++ + + +Y ++C++
Sbjct: 70 DDI---PTEYRIEISETPLKLKVFSLDGSGRMAIEGTVKNSCTVMAQRND--QYSKMCKQ 124
Query: 135 RTNKSMIKNRQIQVIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRG 193
R KSM+K R +Q +++ V R + + N +D ++ + +++ K+ + +
Sbjct: 125 RLIKSMVKTRIVQPLEDLPRVKKARIQFTIEKPDAENEEDDADSKLLDKSD-KKIKMSKD 183
Query: 194 ELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
EL++++F FE + W LK+L QP +
Sbjct: 184 ELKNLVFHHFEEREYWPLKELNYHCRQPESFL 215
>gi|39930425|ref|NP_081092.1| general transcription factor IIF subunit 2 [Mus musculus]
gi|62901035|sp|Q8R0A0.1|T2FB_MOUSE RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
gi|20072603|gb|AAH27173.1| General transcription factor IIF, polypeptide 2 [Mus musculus]
gi|74201290|dbj|BAE26104.1| unnamed protein product [Mus musculus]
gi|148703868|gb|EDL35815.1| general transcription factor IIF, polypeptide 2, isoform CRA_c [Mus
musculus]
Length = 249
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|195389999|ref|XP_002053656.1| GJ23231 [Drosophila virilis]
gi|194151742|gb|EDW67176.1| GJ23231 [Drosophila virilis]
Length = 286
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 40/251 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD + A R VWL+K P +A+ W+ S+ D V K+ +S P Q + ++ +
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMD---VGKLRISKTPGQKAQVSLSLTPAVL 71
Query: 74 SND-----------SLNRPKSYSLNMFKDFVPMSVFSESNQGK---------------VA 107
+ D +++ +L +F P + ++ GK +
Sbjct: 72 ALDPDEKIPTEHVLDVSQVTKQTLGVFSHMAPTEAAAVASNGKENGTGAASGTPDSEKLY 131
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
MEG++ K + +P Y +L E K+ R++Q ID + +P+ I
Sbjct: 132 MEGRIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNYKPVKDHAHNI 188
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
+ K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP +
Sbjct: 189 EYRER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKE 240
Query: 228 FLIPLHHINLR 238
L + N++
Sbjct: 241 ILKDVCDYNMK 251
>gi|195157940|ref|XP_002019852.1| GL12621 [Drosophila persimilis]
gi|194116443|gb|EDW38486.1| GL12621 [Drosophila persimilis]
Length = 282
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 34/246 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLN-----RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKV 112
P + + ++ + V+ +L P++ + N+ K+ + N+ K+ MEG++
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLGVFSHMAPEA-AANIGKENSTAPGAAPDNE-KLYMEGRI 132
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 133 VQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEYRER 189
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPL 232
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L +
Sbjct: 190 --------KKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 233 HHINLR 238
N++
Sbjct: 242 CDYNMK 247
>gi|125778480|ref|XP_001359998.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
gi|54639748|gb|EAL29150.1| GA19669 [Drosophila pseudoobscura pseudoobscura]
Length = 282
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 109/246 (44%), Gaps = 34/246 (13%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLN-----RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKV 112
P + + ++ + V+ +L P++ + N+ K+ + N+ K+ MEG++
Sbjct: 75 PDEKIPTEHVLDVSQVTKQTLGVFSHMAPEA-ATNIGKENSTAPGAAPDNE-KLYMEGRI 132
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 133 VQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEYRER 189
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPL 232
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L +
Sbjct: 190 --------KKAEGKKARDDKNSVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 241
Query: 233 HHINLR 238
N++
Sbjct: 242 CDYNMK 247
>gi|348583519|ref|XP_003477520.1| PREDICTED: general transcription factor IIF subunit 2-like [Cavia
porcellus]
Length = 249
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQWTKAPGRGE---VGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|31542922|ref|NP_112304.2| general transcription factor IIF subunit 2 [Rattus norvegicus]
gi|220891|dbj|BAA01516.1| RAP30 [Rattus norvegicus]
gi|60552080|gb|AAH91112.1| General transcription factor IIF, polypeptide 2 [Rattus norvegicus]
gi|149049981|gb|EDM02305.1| general transcription factor IIF, polypeptide 2, isoform CRA_b
[Rattus norvegicus]
Length = 249
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|45360629|ref|NP_988987.1| general transcription factor IIF, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
gi|38174399|gb|AAH61312.1| general transcription factor 2F, polypeptide 2, 30kDa [Xenopus
(Silurana) tropicalis]
Length = 264
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 38/251 (15%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG+LD AK + +WL+K P +A+ W A + V K+ + + +++ + FT+
Sbjct: 5 KGDLDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLN 60
Query: 69 ETTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVA 107
E A D +P S + ++ F+ ++VF+ES G K+A
Sbjct: 61 EELASIQDIGGKPASSLVTAPREHPFLLQSVGGQTLTVFTESLSGQSDDKSENRVIDKLA 120
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V H+ + +P E Y ++ R++ +S RQ Q I+ + RP+
Sbjct: 121 LEGIVVHRAECRPAAS--ENYMQMKRKQIEESSKPKRQSQQIEKAVTTNYRPV------- 171
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +
Sbjct: 172 -SNHQYNIEYEKKKKDDGKRARADKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKE 230
Query: 228 FLIPLHHINLR 238
L + N++
Sbjct: 231 ILRDIGIYNMK 241
>gi|91082807|ref|XP_968134.1| PREDICTED: similar to AGAP007002-PA [Tribolium castaneum]
gi|270007102|gb|EFA03550.1| hypothetical protein TcasGA2_TC013555 [Tribolium castaneum]
Length = 266
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 41/245 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQ---------------NQASSQDSQPVAKVILSLDP 58
+LD + A R VWL+K P VA W+ N Q S ++ IL+L+
Sbjct: 10 DLDLSNATRGVWLVKVPKYVANRWEKAPSDMEVGKLKITKNGTPPQVSLTLSSAILNLNE 69
Query: 59 LQSDSM--QFTMETTAVSNDSLNRPKSYSLNMFKDFVPM---SVFSESNQGKVAMEGKVE 113
+S+ ++ + V+ +L +F +P +V E+ K+ MEGK+
Sbjct: 70 PGEESIPKDHRLDVSKVTQQTLG--------VFSHVIPTQTDAVVPETE--KLYMEGKIV 119
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
K + +P+ N Y +L E K+ + R+++ +D + +P+ S+ K+
Sbjct: 120 QKLECRPYADNC--YMKLKLESIRKASLPTRKVKQLDRVVTSY-KPV--------SDHKN 168
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
+ K+ E K+ R D+ + +++F FE+ + ++ LV+ T QP + L +
Sbjct: 169 NIEYMERKKAEGKKARDDKDAVLEMLFAAFEKHQYYNIRDLVKITKQPITYLKEILKEVC 228
Query: 234 HINLR 238
+ NL+
Sbjct: 229 NYNLK 233
>gi|242005669|ref|XP_002423685.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506861|gb|EEB10947.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 229
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 57/226 (25%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LDT +R VWL+K P VA W+ + + + V K+ + P Q ++ ++ + AV
Sbjct: 9 LDTTNVERGVWLVKVPKYVATKWEKASGNIE---VGKLKICKQPGQKMQVELSL-SEAVL 64
Query: 75 N----DSLNRPKSYSLNMFK-DFVPMSVFSES----------NQGKVAMEGKVEHKFDMK 119
N N PK + L++ + + VFS + K+AMEG++ K + +
Sbjct: 65 NLKEPGEENIPKDHRLDVLPVKHLTLGVFSHTAPSNLEGVIPESEKLAMEGRIVQKLECR 124
Query: 120 PHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQP 179
P+ N Y +L E K+ + RQ++ +D
Sbjct: 125 PYADNT--YMKLKLETIRKASLPVRQVKQLD----------------------------- 153
Query: 180 VKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R R D+ + +++F FE+ + ++ LV+ T+QP V+
Sbjct: 154 -------RARDDKEAVLNMLFAAFEKHQYYNIRDLVKITNQPIVYL 192
>gi|400922|sp|Q01750.1|T2FB_RAT RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase GTF2F2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|206551|gb|AAA42005.1| helicase [Rattus norvegicus]
Length = 249
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>gi|195107531|ref|XP_001998362.1| GI23671 [Drosophila mojavensis]
gi|193914956|gb|EDW13823.1| GI23671 [Drosophila mojavensis]
Length = 288
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 105/248 (42%), Gaps = 35/248 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLDP 58
LD + A R VWL+K P +A+ W+ S+ D S + +L+LDP
Sbjct: 16 LDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALDP 75
Query: 59 LQSDSMQFTMETTAVSNDSLN--------RPKSYSLNMFKDFVPMSVFSESNQGKVAMEG 110
+ + ++ + V+ +L + + N K+ + + + K+ MEG
Sbjct: 76 DEKIPTEHVLDVSQVTKQTLGVFSHMAPTEATTAAANNGKENGSAAASATPDSEKLYMEG 135
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
++ K + +P Y +L E K+ R++Q ID + +P+ I
Sbjct: 136 RIVQKLECRPIADTC--YMKLKLESIRKASEPQRRVQPIDK-IVQNYKPVKDHAHNIEYR 192
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
+ K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L
Sbjct: 193 ER--------KKAEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 244
Query: 231 PLHHINLR 238
+ N++
Sbjct: 245 DVCDYNMK 252
>gi|363729437|ref|XP_003640649.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Gallus gallus]
Length = 249
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 24/237 (10%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD K + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGVKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P + S F+ ++VF+ES+ K+++EG V + + +P
Sbjct: 60 EELASISDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTDKLSLEGIVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S R Q +D + +P+ +N + + + K
Sbjct: 120 AS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV--------ANHQYNIEYEKKK 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
+ + KR R D+ ++ D++F FE+ + +K LV T QP ++ L + N++
Sbjct: 170 KEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILREIGIYNVK 226
>gi|330806103|ref|XP_003291013.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
gi|325078810|gb|EGC32441.1| hypothetical protein DICPUDRAFT_38380 [Dictyostelium purpureum]
Length = 256
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 48/230 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQ-------------PVAKVILSLDPLQS 61
++T AD VWL+K P +++ W + + + K+ LS+ L S
Sbjct: 12 INTDNADNQVWLIKVPKFLSEHWNGIGKGEIGKIHIKGGDNVNFYFYIIKITLSISGL-S 70
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
++ +F + T+A + ++ P+ +FSE + G +A+EG + + D+K
Sbjct: 71 ENNEFQLMTSANNLET---------------QPLKIFSEDSDGSLALEGNIGLRCDIKID 115
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH------MRPMPGMVGLISSNSKDKK 175
++ Y L + R K K R +VID+ R GL + DKK
Sbjct: 116 VQS-SSYRELMKTRHTKYNTKTRMTKVIDDKELFTPAIFNPNRVQVSTTGLGKRKTTDKK 174
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ P E+ D++F F + W LK L ET QP +
Sbjct: 175 EKLP------------EDEVIDLIFDAFRNKSYWDLKGLEAETGQPKGYL 212
>gi|195451370|ref|XP_002072887.1| GK13842 [Drosophila willistoni]
gi|194168972|gb|EDW83873.1| GK13842 [Drosophila willistoni]
Length = 280
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 103/241 (42%), Gaps = 28/241 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ S+ D S + +L+LD
Sbjct: 16 DLDLSNAGRGVWLVKVPKYIAQKWEKAPSNMDVGKLRISKTPGQKAQVSLSLTPAVLALD 75
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + + N+ K+ MEG++ K +
Sbjct: 76 PEEKIPTEHVLDVSQVTKQTLGVFSHMAPAEAAAAAAAAAAAADNE-KLYMEGRIVQKLE 134
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P Y +L E K+ R++Q ID + +P+ I +
Sbjct: 135 CRPIADTC--YMKLKLESIRKASEPQRRVQPIDKIVQ-NYKPVKDHAHNIEYRER----- 186
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
K+ E K+ R D+ + D++F FE+ + +K LV+ T+QP + L + N+
Sbjct: 187 ---KKAEGKKARDDKNAVMDMLFNAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 243
Query: 238 R 238
+
Sbjct: 244 K 244
>gi|170065599|ref|XP_001868006.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
gi|167862525|gb|EDS25908.1| transcription initiation factor IIF subunit beta [Culex
quinquefasciatus]
Length = 280
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 106/244 (43%), Gaps = 39/244 (15%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S ++ ++++DP
Sbjct: 19 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 78
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESN----QGKVAMEGKVEH 114
+ ++ + V+ +L +F VP S ++ K+ MEG++
Sbjct: 79 AEEIPRDHRLDVSVVTKQTLG--------VFAHSVPASGAGSADPTPESEKLFMEGRIVQ 130
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P+ N Y ++ E K+ RQ++ ++ +P+ S+ K
Sbjct: 131 KLECRPYADNC--YMKMKLESIRKASQPARQLKSLEKIVQT-FKPV--------SDHKHN 179
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
+ + K+ E K++R D+ + D++F FE+ + +K LV+ T QP + L +
Sbjct: 180 IEEKERKKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCD 239
Query: 235 INLR 238
N++
Sbjct: 240 YNMK 243
>gi|348515663|ref|XP_003445359.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oreochromis niloticus]
Length = 255
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
A+ ND SL PK + M M+VFS S+ ++++EG V H+ + +P
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTDEISLEGMVVHRAECRP--VVT 121
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
+ Y +L + + +S+ R Q ++ +P+ +N + + K+TE
Sbjct: 122 DSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------ANHDFNVEYEKKKKTEG 173
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K R +R + D++F FE+ + +K LV T QP +
Sbjct: 174 KMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYL 213
>gi|303288686|ref|XP_003063631.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454699|gb|EEH52004.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 489
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V KFD++P + + Y + R ++ K R +Q V P+P ++
Sbjct: 336 LEGTVSEKFDVRPADVDDSLYREVSARRIAEATRKTRVVQASKGPSRVA--PLPTARNIV 393
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
K+ + T + R +RG LED + L+ER+ W+ KQL +ET QPA++
Sbjct: 394 -------KREDGKEDTRERAERMERGALEDKLMGLYERRSLWSFKQLKEETRQPAMFLKE 446
Query: 228 FLIPLHHINLR 238
L L +N R
Sbjct: 447 TLDGLATLNRR 457
>gi|301107059|ref|XP_002902612.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098486|gb|EEY56538.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 243
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 12/201 (5%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNR 80
DR V+L K P + SW+N S + L+ + M T S +
Sbjct: 17 DREVYLAKIPTALGASWKNVQGS----------IKLEKKSVLGRRKGMLTVNPSTLEDDI 66
Query: 81 PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
P Y + + + + + VFS G++A+EG V++ + + +Y ++C++R KSM
Sbjct: 67 PTEYRVEISETPLKLKVFSLDGSGRMAIEGTVKNSCTIMAQRND--QYSKMCKQRLIKSM 124
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
+K R +Q +++ V + + +++ + K+ + + EL++++F
Sbjct: 125 VKTRIVQPLEDLPRVKKARIQFTIEKPDPEAEEDDADAKLLDKSDKKIKMSKDELKNLVF 184
Query: 201 KLFERQPNWALKQLVQETDQP 221
FE + W LK+L QP
Sbjct: 185 HHFEEREYWPLKELNYHCRQP 205
>gi|312384124|gb|EFR28929.1| hypothetical protein AND_02541 [Anopheles darlingi]
Length = 271
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 36/241 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSW----------------QNQASSQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W Q+ +Q S ++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYMANKWEKAPGNIEVGKLKIFKQSGQKTQVSLTLSDAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
+ ++ + V+ +L D VP K MEG++ K +
Sbjct: 74 AEEIPRDHRLDVSVVTKQTLGVFSHAVTTTRDDPVPEC-------EKQYMEGRIVQKLEC 126
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKKKA 177
+P+ N Y ++ E K+ RQI+ ++ VH +P+ S+ K +
Sbjct: 127 RPYADNC--YMKMKLESIRKASQPARQIKSLEK--IVHNYKPV--------SDHKHNIED 174
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP + L + N+
Sbjct: 175 RERKKAEGKKSREDKNAVLDMLFNAFEKHQYYNIKDLVKLTRQPISYLKEILKEVCDYNM 234
Query: 238 R 238
+
Sbjct: 235 K 235
>gi|226372114|gb|ACO51682.1| Transcription initiation factor IIF subunit beta [Rana catesbeiana]
Length = 264
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 36/250 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + VWL+K P +A+ W A + V K+ ++ + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGVWLVKLPKYLAQQW---AKATGKGEVGKLRIAKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKDF---------VPMSVFSESNQG------------KVAM 108
A D +P + ++ ++VF+ES G K+A+
Sbjct: 62 ELASIQDIGGKPAPSFVTAPREHPFQLQSVGGQTLTVFTESLTGQPEEKSENRTTDKLAI 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + + E Y ++ R + +S RQ Q I+ ++ +P+
Sbjct: 122 EGIVVQRAECRAAAS--EHYMQMKRRQIEESSKPKRQSQQIERAVTINYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
SN ++ + + K+ E KR R D+ ++ D++F FE+ + LK LV T QP ++
Sbjct: 172 SNHQNNIEYERKKKDEGKRARADKQQVLDMLFSAFEKHQYYNLKDLVDITKQPVLYLKEI 231
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 232 LKDIGVYNVK 241
>gi|157138343|ref|XP_001657254.1| hypothetical protein AaeL_AAEL013998 [Aedes aegypti]
gi|108869504|gb|EAT33729.1| AAEL013998-PA [Aedes aegypti]
Length = 270
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 39/243 (16%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S +++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSEAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSE-SNQG-KVAMEGKVEHKF 116
+ + ++ + V+ +L +F VP + + +G K+ MEG++ +
Sbjct: 74 GEEIPREHKLDVSVVTKQTLG--------VFSHSVPSGTKEDGAPEGEKLFMEGRIVQRL 125
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKK 175
+ +P N Y ++ E K+ RQ++ ++ VH +P V N +DK+
Sbjct: 126 ECRPLGDNA--YMKMKLESIRKASQPARQVKSLEKI--VHNFKP----VSDHKHNIEDKE 177
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP + L +
Sbjct: 178 R----KKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVKITRQPISYLKEILKEVCDY 233
Query: 236 NLR 238
N++
Sbjct: 234 NMK 236
>gi|302666417|ref|XP_003024808.1| hypothetical protein TRV_01024 [Trichophyton verrucosum HKI 0517]
gi|291188880|gb|EFE44197.1| hypothetical protein TRV_01024 [Trichophyton verrucosum HKI 0517]
Length = 402
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 32/246 (13%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDP--LQSDSMQFTMET 70
G+LD A ++VWL + P + + W ++ Q + V + DP ++ ++ FT +
Sbjct: 96 GDLDFTNAFQNVWLTRIPRNLWEQWSKLDDDEEIQ-IGTVRVEGDPTDIKRNTFVFTEKD 154
Query: 71 TAVSNDSLNR--------PKSY-------------SLNMFKDFVPMSVFSESNQGKVAME 109
D +NR +SY ++ +V +V ++ A+
Sbjct: 155 LPGYKDKMNRFYNENQPYGRSYLYEQTKRDAKKKERKKKWEPYVRKTVPRQT-----AIT 209
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
+V +F+ P E EEY RL ER +S+ R+ + I+ G ++P + S
Sbjct: 210 ARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVAAADKS 266
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFL 229
N K V+ E K R + EL D+++ F R W K L E QP V+ L
Sbjct: 267 NFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVYLKQTL 326
Query: 230 IPLHHI 235
+ H+
Sbjct: 327 EIVAHL 332
>gi|410912909|ref|XP_003969931.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 249
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 21/232 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
+L AK + VWL+K P +++ W+ + V K+ + Q S E
Sbjct: 7 DLTGAKQNTGVWLVKVPKYLSQQWEKATGRGE---VGKLQICKKGSQGKPEVSFNLNEEL 63
Query: 71 TAVSN---DSLNRPKSYSLNMFK-DFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
T + +++ P + M ++VF+E+ K+A+EG V + D +P E
Sbjct: 64 TVIEGLEKKTVSAPHEHKFTMQSVGGQILAVFTETTSDKLALEGMVVQRADCRPAVN--E 121
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y RL R + +S R Q I N + +P+ +N + + K+ E K
Sbjct: 122 NYMRLKRLQIEESSKPTRLSQQIQNP-VTNYKPV--------ANHSYNLEYEKKKKEEGK 172
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
R R D+ ++ D++F FE+ + +K LV T QP ++ L + H N++
Sbjct: 173 RARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEILRDIGHYNIK 224
>gi|336363992|gb|EGN92358.1| hypothetical protein SERLA73DRAFT_191197 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383070|gb|EGO24219.1| hypothetical protein SERLADRAFT_467154 [Serpula lacrymans var.
lacrymans S7.9]
Length = 361
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 108/277 (38%), Gaps = 71/277 (25%)
Query: 19 KADRSVWLMKCPLVVAKSWQNQASSQDSQ---------------PVAK---VILSLDPLQ 60
K + VWL+K P + + W SS D++ P K ++L L P
Sbjct: 35 KGNGRVWLVKVPKHLMERW----SSIDAENIHLATVRVYPDAVGPTGKSPRIVLFLPPDP 90
Query: 61 SDSMQ-------FTMETTAVSNDSLNRPKSYSLNMFKDFV-------------------- 93
SD+ F+ V + Y L+M D V
Sbjct: 91 SDTTPRDPALPPFSSNAAFVPGEGDVHVDRYELDMVNDDVDNQLVVAERPKEPVPPTSSA 150
Query: 94 PMSVFSESNQGKVA-MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDND 152
P S +N+ + + G+++H+ +++P E Y R RER+ K RQI++I+ D
Sbjct: 151 PTSTPPVNNRARTTILTGRIKHECNLRPIFN--ESYRRQMRERSRKYNTPRRQIRMIE-D 207
Query: 153 HGVHMRPMPGMVGLISSNSKD-------------KKKAQPVKQTEVKRTRRDRGELEDIM 199
GV G G I+ S K K +P K + R R +L D++
Sbjct: 208 AGVS-----GGRGGINRLSSGVGVGAGGAFSDLIKSKPKPAKGAFERMARMPRNQLLDLL 262
Query: 200 FKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
F LF QP W++K L + T QP + L + +N
Sbjct: 263 FTLFREQPRWSIKPLRERTQQPEAYLKEVLGEIGQLN 299
>gi|349605491|gb|AEQ00709.1| General transcription factor IIF subunit 2-like protein, partial
[Equus caballus]
Length = 231
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 25 WLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-ETTAVSNDSLNRPKS 83
WL+K P +++ W A + V K+ ++ + +++ + FT+ E A +D +P S
Sbjct: 1 WLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNEDLANIHDIGGKPAS 56
Query: 84 YSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERT 136
S FV ++VF+ES+ K+++EG V + + +P E Y RL R +
Sbjct: 57 VSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP--AASENYMRLKRLQI 114
Query: 137 NKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELE 196
+S R Q +D + +P+ +N + + + K+ + KR R D+ +
Sbjct: 115 EESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKKEDGKRARADKQHVL 166
Query: 197 DIMFKLFERQPNWALKQLVQETDQPAVWF 225
D++F FE+ + LK LV T QP ++
Sbjct: 167 DMLFSAFEKHQYYNLKDLVDITKQPVLYL 195
>gi|156555618|ref|XP_001602997.1| PREDICTED: general transcription factor IIF subunit 2-like [Nasonia
vitripennis]
Length = 270
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 29/248 (11%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
S+ + + +LD + A R VWL+K P +A W+ + + VAK+ ++ Q +
Sbjct: 4 SSAAHAEKDLDLSNAGRGVWLVKVPKYIASKWEKAPGNIE---VAKLRITKHVKQKAEVT 60
Query: 66 FTMETTAVS---NDSLNRPKSYSLNMFKDF-VPMSVFSE-----------SNQGKVAMEG 110
+ ++ + PK + L++ + VFS K++MEG
Sbjct: 61 LKLSEAVLALKEPGEQDIPKQHKLDVTTVIHQTLGVFSHLPSPNNADTSAPEADKLSMEG 120
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
K+ K + +PH N Y +L E K+ I RQ+Q + + +P+ S+
Sbjct: 121 KIVQKLECRPHADNT--YMKLKLESIKKASIPQRQVQQLQRA-VQNFKPV--------SD 169
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
K + K+ E K+ R D+ + +++F FE+ + +K LV+ T QP V+ L
Sbjct: 170 HKHNIEYAEKKKAEGKKMRDDKAVVLEMLFAAFEKHQYYNIKDLVKITRQPVVYLKEILN 229
Query: 231 PLHHINLR 238
+ + NL+
Sbjct: 230 EVCNYNLK 237
>gi|164448676|ref|NP_001096603.1| general transcription factor IIF, polypeptide 2a isoform 2 [Danio
rerio]
gi|156230595|gb|AAI52268.1| MGC174761 protein [Danio rerio]
Length = 249
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 24/224 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSD 62
G+ +L AK + VWL+K P +++ W + +Q A+V +L+ +
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQGKAEVSFTLNEELT- 63
Query: 63 SMQFTMETTAVSNDSLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
T+ET + P+ + + ++VF+E++ K+A+EG V + + +P
Sbjct: 64 ----TIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSDKIALEGVVVQRAECRPA 119
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y RL + + + R Q +D + +P+ +N + K
Sbjct: 120 VS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV--------ANHAYNLDYEKRK 169
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ E KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 170 KEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYL 213
>gi|391326183|ref|XP_003737600.1| PREDICTED: general transcription factor IIF subunit 2-like
[Metaseiulus occidentalis]
Length = 266
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 33/242 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G ++D + A R VWL+K P +A+ W+ A ++ ++ +S P ++ + F +
Sbjct: 8 GDRDVDCSNACRGVWLVKVPKYIAEKWKKAAPLSEA---GRIKISRQPNGTNDITFKLSN 64
Query: 71 TA----VSNDS---LNRPKSYSLNMFKDFVPMSVFS---ESNQGKVAMEGKVEHKFDMKP 120
A + D ++ + SL ++ P +V E QGK+ +EG + K + +P
Sbjct: 65 VAEEEKIPTDHKFVISNIQQQSLAVYSQ--PKAVNEDGIECGQGKICLEGSIVQKGECRP 122
Query: 121 HEKNMEEYGRLCRERTNKSMIKNRQI----QVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
++ Y L R + ++ R +V+ N +P+ V + ++
Sbjct: 123 IGNDIH-YMDLKRRKIMEASQPKRAAIGLERVVQN-----FKPVARHVHQVEYEAR---- 172
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
K+ E K+ R DR ++ +++F FE+ + +K L + T QPA + L + + N
Sbjct: 173 ----KKNEGKKARGDRDQVLEMLFAAFEKHQYYNIKDLERITKQPAPFLKELLKEVCNYN 228
Query: 237 LR 238
++
Sbjct: 229 VK 230
>gi|350416874|ref|XP_003491146.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
impatiens]
Length = 271
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 TNMSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LIPLHHINLR 238
L + + NL+
Sbjct: 227 LNEVCNYNLK 236
>gi|432851973|ref|XP_004067133.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oryzias latipes]
Length = 249
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 21/219 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM--ET 70
+L AK + VWL+K P +A+ W A + V K+ I+ L + FT+ E
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGKLRIIKKGNLGKPEVSFTLNEEL 64
Query: 71 T---AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
T + + +++ P+ + M M +VF+ES+ K+A+EG V + + +P E
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSDKIALEGVVVQRAECRPAVS--E 122
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
Y +L R + +S +R Q + + +P+ +N + ++ + K+ E K
Sbjct: 123 SYMKLKRLQIEESSKPSRLSQQLSKPV-TNYKPV--------ANHEYNREYEKKKKEEGK 173
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R R D+ ++ +++F FE+ + +K LV T QP ++
Sbjct: 174 RARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYL 212
>gi|307203229|gb|EFN82384.1| General transcription factor IIF subunit 2 [Harpegnathos saltator]
Length = 272
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLRLSEAVLA 68
Query: 75 ---NDSLNRPKSYSLNM----------FKDFVPMS----VFSESNQGKVAMEGKVEHKFD 117
+ PK + L++ F P + + E+ K+ MEG++ K +
Sbjct: 69 LKESGEEEIPKQHRLDVTTVTTQILGVFSHVTPSTSSDAIVPETE--KIFMEGRIVQKLE 126
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P+ N Y +L E ++ + RQ+Q +D + +P+ S+ K +
Sbjct: 127 CRPYADNC--YMKLKLESIKRASVPQRQVQQLDRVVQ-NFKPV--------SDHKHNIEY 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
K+ E K+ R D+ + ++F FER + +K LV+ T QP V+ L + + NL
Sbjct: 176 AEKKKAEGKKMRDDKEAVLGMLFAAFERHQYYNIKDLVKITRQPIVYLKEILNEVCNYNL 235
Query: 238 R 238
+
Sbjct: 236 K 236
>gi|402225030|gb|EJU05092.1| hypothetical protein DACRYDRAFT_98779 [Dacryopinax sp. DJM-731 SS1]
Length = 332
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 18/227 (7%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME--TTA 72
+D A+ + VW++K P + + W +V + DP + + + T
Sbjct: 43 MDAAEGEEKVWMVKLPKFLMEKWTAIEQEDVVLGTLRVYHAPDPNGNQRLVLRLPEMTDP 102
Query: 73 VSNDSLNRPKSYSLNMFK-----DFVPMSVFSESNQGKVA--MEGKVEHKFDMKPHEKNM 125
D PK YSL M + +FV S E + ++ +EGK+ H P
Sbjct: 103 AVYDITTLPKQYSLKMQRKTVENEFVMASKMKERERNIISTKLEGKIVHDCHAFPIMD-- 160
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRP--MPGMVG-----LISSNSKDKKKAQ 178
Y L R ++ RQ +V++++ G R + G G + +KKA
Sbjct: 161 ASYTSLVASRHREANAPKRQTKVLEDEGGALHRINMLAGGAGENLGTGFGNFVSTEKKAA 220
Query: 179 PVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ R R EL D++F LF NW+++ L T QP +
Sbjct: 221 VASSAFERAARMPRNELMDLLFPLFRSNDNWSIRDLRNRTRQPEAYL 267
>gi|348515667|ref|XP_003445361.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oreochromis niloticus]
Length = 259
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 26/224 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFS----ESNQGKVAMEGKVEHKFDMKPH 121
A+ ND SL PK + M M+VFS ES + ++++EG V H+ + +P
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTESYKNEISLEGMVVHRAECRP- 122
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ Y +L + + +S+ R Q ++ +P+ +N + + K
Sbjct: 123 -VVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------ANHDFNVEYEKKK 173
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+TE K R +R + D++F FE+ + +K LV T QP +
Sbjct: 174 KTEGKMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYL 217
>gi|449280331|gb|EMC87658.1| General transcription factor IIF subunit 2 [Columba livia]
Length = 262
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 37/250 (14%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K P +++ W N+AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-NKASGRGE--VGKLRITKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESN-------------QGKVAM 108
E A +D +P S S F+ ++VF+ES+ K+A+
Sbjct: 60 EELANISDIGGKPTSVSAPREHPFILQSVGGQTLTVFTESSVESQPDEKSESSSSDKLAL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 230 LREIGIYNVK 239
>gi|118778639|ref|XP_308768.3| AGAP007002-PA [Anopheles gambiae str. PEST]
gi|116132481|gb|EAA04044.3| AGAP007002-PA [Anopheles gambiae str. PEST]
Length = 272
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 103/241 (42%), Gaps = 36/241 (14%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQAS----------------SQDSQPVAKVILSLDP 58
LD + A R VWL+K P +A W+ +Q S ++ ++++DP
Sbjct: 14 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISKQVGQKAQVSLTLSDAVINIDP 73
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
+ ++ + V+ +L D VP K MEG++ K +
Sbjct: 74 AEEIPRDHRLDVSVVTKQTLGVFSHAVTTTRDDPVPEC-------EKQYMEGRIVQKLEC 126
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVH-MRPMPGMVGLISSNSKDKKKA 177
+P+ + Y ++ E K+ RQ++ ++ VH +P+ S+ K +
Sbjct: 127 RPYADHC--YMKMKLESIRKASQPARQVKSLEK--IVHNYKPV--------SDHKHNIED 174
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
+ K+ E K++R D+ + D++F FE+ + +K LV+ T QP + L + N+
Sbjct: 175 RERKKAEGKKSRDDKNAVLDMLFNAFEKHQYYNIKDLVRITRQPISYLKEILKEVCDYNM 234
Query: 238 R 238
+
Sbjct: 235 K 235
>gi|380020787|ref|XP_003694260.1| PREDICTED: general transcription factor IIF subunit 2-like [Apis
florea]
Length = 271
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 ANVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LIPLHHINLR 238
L + + NL+
Sbjct: 227 LNEVCNYNLK 236
>gi|325179554|emb|CCA13952.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 329
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 94/201 (46%), Gaps = 7/201 (3%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNR 80
DR ++L K P + SW+ S + + L+ +D + +
Sbjct: 61 DREIYLAKIPTALGASWKKIKESD----LMLGSIKLNETGADGRRRGLLNVNPMTIDDEV 116
Query: 81 PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
P Y + + + + VFS+ G++A+EG V + + + +Y ++C++R +SM
Sbjct: 117 PTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYSKMCKQRLLRSM 174
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
+K R +Q +++ V + + ++++ +++ ++ + K+ + + EL+D++F
Sbjct: 175 VKTRIVQPLEDLPRVKKARIQFTIDKPDPDTEEAIESKISERLD-KKVKMSKDELKDLVF 233
Query: 201 KLFERQPNWALKQLVQETDQP 221
F+ + W LK+L QP
Sbjct: 234 HHFDERDFWPLKELNSHCRQP 254
>gi|332018908|gb|EGI59454.1| General transcription factor IIF subunit 2 [Acromyrmex echinatior]
Length = 269
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 33/241 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 ---NDSLNRPKSYSLNM----------FKDFVPMS----VFSESNQGKVAMEGKVEHKFD 117
+ PK + L++ F P + + E+ K+ MEG++ K +
Sbjct: 69 LKESGEGEIPKQHRLDVTTVTRQMLGVFSHVAPSTSSDAIVPETE--KLFMEGRIVQKLE 126
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P+ N Y +L E ++ + RQ+Q +D + +P+ S+ K +
Sbjct: 127 CRPYADNC--YMKLKLESIKRASVPQRQVQQLDRVVQ-NFKPV--------SDHKHNIEY 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+ L + + NL
Sbjct: 176 AEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNL 235
Query: 238 R 238
+
Sbjct: 236 K 236
>gi|340719856|ref|XP_003398361.1| PREDICTED: general transcription factor IIF subunit 2-like [Bombus
terrestris]
Length = 271
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 TNVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LIPLHHINLR 238
L + + NL+
Sbjct: 227 LNEVCNYNLK 236
>gi|325179553|emb|CCA13951.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 330
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 94/201 (46%), Gaps = 7/201 (3%)
Query: 21 DRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNR 80
DR ++L K P + SW+ S + + L+ +D + +
Sbjct: 62 DREIYLAKIPTALGASWKKIKESD----LMLGSIKLNETGADGRRRGLLNVNPMTIDDEV 117
Query: 81 PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
P Y + + + + VFS+ G++A+EG V + + + +Y ++C++R +SM
Sbjct: 118 PTEYRIEIGPTPLKLKVFSQDGSGRMAIEGTVSNSCTIIAQRND--QYSKMCKQRLLRSM 175
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
+K R +Q +++ V + + ++++ +++ ++ + K+ + + EL+D++F
Sbjct: 176 VKTRIVQPLEDLPRVKKARIQFTIDKPDPDTEEAIESKISERLD-KKVKMSKDELKDLVF 234
Query: 201 KLFERQPNWALKQLVQETDQP 221
F+ + W LK+L QP
Sbjct: 235 HHFDERDFWPLKELNSHCRQP 255
>gi|66564899|ref|XP_623868.1| PREDICTED: general transcription factor IIF subunit 2 isoform 1
[Apis mellifera]
Length = 271
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 6 SNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQ 65
+N + + LD + A R VWL+K P +A W+ + + V K+ ++ +P Q +
Sbjct: 3 ANVSHTEKELDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVS 59
Query: 66 FTMETTAVSNDSLNR---PKSYSLNM----------FKDFVPMS----VFSESNQGKVAM 108
+ ++ PK + L++ F P S + E+ K+ M
Sbjct: 60 LRLSEAVLALKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSSSSDSIVPETE--KLYM 117
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG++ K + +P+ N Y +L + ++ + RQ+Q +D + +P+
Sbjct: 118 EGRIVQKLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NFKPV-------- 166
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
S+ K + K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+
Sbjct: 167 SDHKHNIEYAEKKKAEGKKMRDDKDAVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEI 226
Query: 229 LIPLHHINLR 238
L + + NL+
Sbjct: 227 LNEVCNYNLK 236
>gi|353526286|sp|Q54KT7.2|T2FB_DICDI RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta
Length = 241
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
G ++T AD VWL+K P +++SWQ + Q K + LS P +F +
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
TTA + D+ P+ +FSE G +A+EG + + D+K ++ +Y
Sbjct: 69 ITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
L + R K K R QVID P L +N K K V T+ K++
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVGITQKKKS 162
Query: 189 RRD-----RGELEDIMFKLFERQPNWALKQLVQETDQP 221
E+ D++F F + + LK L T+QP
Sbjct: 163 TDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQP 200
>gi|383858209|ref|XP_003704594.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Megachile rotundata]
Length = 272
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 33/241 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 NDSLNR---PKSYSLNM----------FKDFVPM----SVFSESNQGKVAMEGKVEHKFD 117
PK + L++ F P S+ E+ K+ MEG++ K +
Sbjct: 69 LKEPGEEEIPKQHRLDVTTVTKQMLGVFSHVTPSTSSDSIVPETE--KLYMEGRIVQKLE 126
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P+ N Y +L + ++ + RQ+Q +D + +P+ S+ K +
Sbjct: 127 CRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NYKPV--------SDHKHNIEY 175
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+ L + + NL
Sbjct: 176 AEKKKAEGKKMRDDKDTVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCNYNL 235
Query: 238 R 238
+
Sbjct: 236 K 236
>gi|148231943|ref|NP_001082266.1| general transcription factor IIF subunit 2 [Xenopus laevis]
gi|464520|sp|Q03123.1|T2FB_XENLA RecName: Full=General transcription factor IIF subunit 2; AltName:
Full=ATP-dependent helicase gtf2f2; AltName:
Full=Transcription initiation factor IIF subunit beta;
Short=TFIIF-beta; AltName: Full=Transcription initiation
factor RAP30
gi|65135|emb|CAA78835.1| transcription factor RAP30 [Xenopus laevis]
gi|49256181|gb|AAH73677.1| LOC398333 protein [Xenopus laevis]
Length = 264
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 36/250 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + +WL+K P +A+ W A + V K+ + + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVAM 108
A D +P S ++ ++ F+ ++V +ES G K+A+
Sbjct: 62 ELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLAL 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V H+ + +P + Y ++ R++ +S RQ Q ++ + +P+
Sbjct: 122 EGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +
Sbjct: 172 SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEI 231
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 232 LRDIGIYNMK 241
>gi|66807241|ref|XP_637343.1| TFIIF subunit [Dictyostelium discoideum AX4]
gi|60465764|gb|EAL63840.1| TFIIF subunit [Dictyostelium discoideum AX4]
Length = 248
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 44/225 (19%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQ-----------PVAKVILSLDPLQS 61
G ++T AD VWL+K P +++SWQ + Q K+ LS P
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNYRYKYIKISLSYGP--D 68
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
+F + TTA + D+ P+ +FSE G +A+EG + + D+K
Sbjct: 69 VGQEFQLITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKID 113
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
++ +Y L + R K K R QVID P L +N K K V
Sbjct: 114 VES-PQYRDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVG 162
Query: 182 QTEVKRTRRD-----RGELEDIMFKLFERQPNWALKQLVQETDQP 221
T+ K++ E+ D++F F + + LK L T+QP
Sbjct: 163 ITQKKKSTDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQP 207
>gi|328857693|gb|EGG06808.1| hypothetical protein MELLADRAFT_77731 [Melampsora larici-populina
98AG31]
Length = 356
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 21 DRSVWLMKCPLVVAKSWQNQA-SSQDSQPVAK----------------VILSLDPLQSDS 63
D WL+K P +++ WQ A +S D +A+ ++ L L +
Sbjct: 34 DARTWLVKVPKFLSERWQQHAQASGDGVELARMRVHDQDAAGNRKIEIILPDLPDLPAVP 93
Query: 64 MQFTMET--TAVSN----DSLNRPKSYSLNMFKDFVPMSVFSESNQ--------GKVA-- 107
+T++ A +N D L++P+ + K+ +P S S +NQ KVA
Sbjct: 94 TNYTLDVRNPASTNLYVFDELSKPEVVGTSTVKNEMPAS-GSANNQLNKPRRPRPKVARR 152
Query: 108 --MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+ GK+ H+ + P + Y + R R K+ R I+ ++ D G R G+
Sbjct: 153 PRVTGKIMHECLVSPVIN--DSYRAVMRARQQKASQPKRTIKRVNEDVGTLNRMASGIST 210
Query: 166 LISSN--SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAV 223
+ +N + + A P ++ K TR R EL D +F F R W++K L +T QP
Sbjct: 211 QVQANKFAAFTRAAGPSTKSTEKFTRMPRTELLDALFAGFLRYEYWSMKSLRDQTKQPEA 270
Query: 224 WF 225
+
Sbjct: 271 YL 272
>gi|443920503|gb|ELU40411.1| transcription initiation factor IIF, beta subunit domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 298
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 20 ADRSVWLMKCPLVVAKSWQN-----------QASSQDSQPVAKVILSLDPLQSDSMQ--- 65
A +VWL+K P V +SW + + PV +++LS DP +S++
Sbjct: 35 ASGTVWLVKVPRTVMESWMRIDKDGEDLGTLRVYHETEPPVIQLLLSNDPSLKESLRGAV 94
Query: 66 FTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
FT+ TAV RPK NMF V SE+ ++ + +K +
Sbjct: 95 FTLTPTAV------RPK----NMF-------VISETT----PIQTDMRKTAIIKRPTAIL 133
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
RL K+ RQ+ ID+ + + G L + ++ K+K +P
Sbjct: 134 TVGSRLFNIAFTKANEPRRQLIQIDDGNAQIKKIASGAGHLGNFSNMVKQKPKPAAGQFE 193
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ R + EL D++FKLF Q +W++K L + T QP
Sbjct: 194 RAARIPKNELLDMLFKLFMVQSHWSMKVLRERTKQP 229
>gi|326914113|ref|XP_003203372.1| PREDICTED: general transcription factor IIF subunit 2-like
[Meleagris gallopavo]
Length = 262
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 37/250 (14%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSES---NQG----------KVAM 108
E A +D +P S S F+ ++VF+ES NQ K+++
Sbjct: 60 EELASISDIGGKPASVSAPREHPFLLQSVGGQTLTVFTESSTENQSEEKSESSSYDKLSL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 230 LREIGIYNVK 239
>gi|432851975|ref|XP_004067134.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
3 [Oryzias latipes]
Length = 242
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETT-- 71
+L AK + VWL+K P +A+ W A + V K L ++ S E T
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGK----LRIIKYVSFTLNEELTII 60
Query: 72 -AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYG 129
+ + +++ P+ + M M +VF+ES+ K+A+EG V + + +P E Y
Sbjct: 61 EGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSDKIALEGVVVQRAECRPAVS--ESYM 118
Query: 130 RLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTR 189
+L R + +S +R Q + + +P+ +N + ++ + K+ E KR R
Sbjct: 119 KLKRLQIEESSKPSRLSQQLSKP-VTNYKPV--------ANHEYNREYEKKKKEEGKRAR 169
Query: 190 RDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
D+ ++ +++F FE+ + +K LV T QP ++
Sbjct: 170 ADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYL 205
>gi|432931999|ref|XP_004081735.1| PREDICTED: general transcription factor IIF subunit 2-like [Oryzias
latipes]
Length = 253
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 21/219 (9%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTMETTA 72
NL + + VWL+K P +++ W + + V K+ + +++ + E A
Sbjct: 8 NLTGVRQSKGVWLVKVPKYLSQQWDK---ATEKGEVGKITIGKKQGKTEVCFSLSEELAA 64
Query: 73 VS-----NDSLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNME 126
+ + S+ P+ + M M+VFS+S+ +++EG V H+ + +P+ E
Sbjct: 65 LGSAEEKDASVQVPRDHPFTMQTVGGQTMAVFSQSDTDGISLEGTVVHRAECRPNVS--E 122
Query: 127 EYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVK 186
+Y ++ R ++ +S+ R Q +D +P+ +N + + K++E K
Sbjct: 123 DYMKIKRLQS-ESVKPQRLSQQLDRAITTVFKPV--------ANHDFNVEFEKKKKSEGK 173
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R +R + D++F FE+ ++ K LV T QP +
Sbjct: 174 MVRAERQVVMDMLFSAFEKHQYYSFKDLVDITKQPVTYL 212
>gi|126305072|ref|XP_001362176.1| PREDICTED: general transcription factor IIF subunit 2-like
[Monodelphis domestica]
Length = 261
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 34/248 (13%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W +AS + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTRVWLVKVPKYLSQQW-TKASGRGE--VGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYS----------------LNMFKDFVPMS---VFSESNQGKVAMEG 110
A D +P S S L +F + P SES ++++EG
Sbjct: 61 ELANICDIDGKPSSVSAPREHRFHLQSVGGQTLTVFTESSPEGQPEGNSESRNNQLSLEG 120
Query: 111 KVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSN 170
V + + +P E Y RL R + +S R Q +D + +P+ I+
Sbjct: 121 IVVQRAECRPAAS--ENYMRLKRLQIEESSKPVRLAQHLDKAVTTNFKPVANHQNNIAYE 178
Query: 171 SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLI 230
K K+ KR R ++ ++ D++F FE+ + +K LV T QP ++ L
Sbjct: 179 KKKKEDG--------KRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPIIYLKELLR 230
Query: 231 PLHHINLR 238
+ N++
Sbjct: 231 EIGIYNVK 238
>gi|383858211|ref|XP_003704595.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Megachile rotundata]
Length = 277
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LD + A R VWL+K P +A W+ + + V K+ ++ +P Q + + ++
Sbjct: 12 LDLSNAGRGVWLVKVPKYIANKWEKAPGNIE---VGKLKITKNPGQKAEVSLKLSEAVLA 68
Query: 75 NDSLNR---PKSYSLNMF---KDFVPMSVFSESN--------------QGKVAMEGKVEH 114
PK + L++ K + +F + N K+ MEG++
Sbjct: 69 LKEPGEEEIPKQHRLDVTTVTKQMLDALLFHKCNFWLASTSSDSIVPETEKLYMEGRIVQ 128
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P+ N Y +L + ++ + RQ+Q +D + +P+ S+ K
Sbjct: 129 KLECRPYADNC--YMKLKLQSIKRASVPQRQVQQLDRVVQ-NYKPV--------SDHKHN 177
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
+ K+ E K+ R D+ + D++F FE+ + ++ LV+ T QP V+ L + +
Sbjct: 178 IEYAEKKKAEGKKMRDDKDTVLDMLFAAFEKHQYYNIRDLVKITRQPIVYLKEILNEVCN 237
Query: 235 INLR 238
NL+
Sbjct: 238 YNLK 241
>gi|348515665|ref|XP_003445360.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
2 [Oreochromis niloticus]
Length = 271
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 38/236 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
+L K + VWL+K P +++ W A D V K+ + +++ + F++ E T
Sbjct: 8 DLSGVKQSKGVWLVKVPKYLSQQWDKAAEKGD---VGKITIGKKQGKTE-VCFSLIDELT 63
Query: 72 AV----SND-SLNRPKSYSLNMFK-DFVPMSVFSESNQGK----------------VAME 109
A+ ND SL PK + M M+VFS S+ G+ +++E
Sbjct: 64 ALDAVGENDASLQVPKDHPFTMHTVGGQTMAVFSHSDTGQSKPTTSPAETGSGRDEISLE 123
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
G V H+ + +P + Y +L + + +S+ R Q ++ +P+ +
Sbjct: 124 GMVVHRAECRP--VVTDSYMKLKKLQIKESVKPQRLSQQLERAVTTIFKPV--------A 173
Query: 170 NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
N + + K+TE K R +R + D++F FE+ + +K LV T QP +
Sbjct: 174 NHDFNVEYEKKKKTEGKMVRAERQLVLDMLFSAFEKHQYYNIKALVDITKQPVTYL 229
>gi|442759999|gb|JAA72158.1| Putative transcription initiation factor iif small subunit rap30
[Ixodes ricinus]
Length = 254
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM 68
G+ LD A R VWL+K P +A W N+A ++ ++ P ++FT+
Sbjct: 2 GDQDKELDCTNAARGVWLVKVPKYIASRW-NKAPPMSE--AGRLKITKGPNGKTDIRFTL 58
Query: 69 ETTAVSNDSLNR----PKSY----------SLNMFKDFVPMSVFSESNQGKVAMEGKVEH 114
V+ + PK + +L +F + E + GKV +EG V
Sbjct: 59 SDECVNMKDVTEKSTIPKEHRFVISNISNQNLAVFSQNKVVEDGVEHSTGKVCLEGHVVQ 118
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 KGECRPM--GDDRYMQLKRQTILKASQPIRQVKQLDRI-VQNYKPV--------ADHKHN 167
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP + L + +
Sbjct: 168 LEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICN 227
Query: 235 INLR 238
N +
Sbjct: 228 YNAK 231
>gi|241829140|ref|XP_002414741.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
gi|215508953|gb|EEC18406.1| transcription initiation factor IIF, small subunit, putative
[Ixodes scapularis]
Length = 254
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM 68
G+ LD A R VWL+K P +A W N+A ++ ++ P ++FT+
Sbjct: 2 GDQDKELDCTNAARGVWLVKVPKYIASRW-NKAPPMSE--AGRLKITKGPNGKTDIRFTL 58
Query: 69 ETTAVSNDSLNR----PKSY----------SLNMFKDFVPMSVFSESNQGKVAMEGKVEH 114
V+ + PK + +L +F + E + GKV +EG V
Sbjct: 59 SDECVNMKDVTEKSTIPKEHRFVISNISNQNLAVFSQNKVVEDGVEHSTGKVCLEGHVVQ 118
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK 174
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 KGECRPM--GDDRYMQLKRQTILKASQPVRQVKQLDRI-VQNYKPV--------ADHKHN 167
Query: 175 KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHH 234
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP + L + +
Sbjct: 168 LEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEICN 227
Query: 235 INLR 238
N +
Sbjct: 228 YNAK 231
>gi|392564191|gb|EIW57369.1| hypothetical protein TRAVEDRAFT_72488 [Trametes versicolor
FP-101664 SS1]
Length = 366
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 133 RERTNKSMIKNRQIQVIDNDHGVHMRP--MPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
R RT + I RQI++ + G +RP MP + +D K P K+T +R R
Sbjct: 216 RARTVAAAIPQRQIKIYEPKPG-EVRPECMPRV------RPRDAK--APRKRTANRRVRA 266
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
D+ EL D++F+LF +P W+ K L ++T QP +
Sbjct: 267 DKAELLDMLFQLFVDRPQWSFKDLQEKTRQPEAYL 301
>gi|388580343|gb|EIM20658.1| transcription initiation factor IIF, beta subunit [Wallemia sebi
CBS 633.66]
Length = 313
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 32/234 (13%)
Query: 24 VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKS 83
VWL+K P + + W+N QD+ + +L +S++ + + + P+
Sbjct: 38 VWLIKIPKFLKERWEN--VDQDALELG----TLRVFNDNSVKVILPNQQYDQLTPDLPRE 91
Query: 84 YSLNMFKDFVPMS-VFSE------------SNQGKVA---------MEGKVEHKFDMKPH 121
Y+LN+ K S VF+E +N G + GK+ H+ + P
Sbjct: 92 YTLNVHKHTSDNSYVFAEKESEITQEQQNVANSGAFTKINPPINTKLSGKIHHEGSLIPD 151
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
+ Y + ++R + R ++++ + + SS K K Q
Sbjct: 152 LND--SYKHIMKQRQQSASQPKRTAKILEPE-DTKLASGFNTASRFSSFIKTDKSKQKGA 208
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
Q E + R R EL D++F LFERQ W ++ L T QP + L+ + H+
Sbjct: 209 QFE-RAARMPRNELLDLLFSLFERQKYWNMRDLRSRTQQPLTYLKETLMTIAHL 261
>gi|296818645|ref|XP_002849659.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
gi|238840112|gb|EEQ29774.1| transcription initiation factor IIF subunit beta [Arthroderma otae
CBS 113480]
Length = 381
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ ER +S+ R+ + I+ G +RP +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRIAEERALESLKPKRETKFIEKVPGKMLRPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 241 AADKSNFIQVTKPAKVRAQENKTARMPQNELLDLIYACFRRYKYWPFKSLKAELRQPEVY 300
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 301 LKQTLEIVAHL 311
>gi|225717456|gb|ACO14574.1| Transcription initiation factor IIF subunit beta [Caligus clemensi]
Length = 275
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 37/245 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK------------VILSLDPLQS 61
+L T R VWL+K P ++ W+ + D++ V K V SLD
Sbjct: 12 DLFTENRKRGVWLVKVPKYISDRWEK---APDNEVVGKLRIVKRARAKPDVSFSLDDKIV 68
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSE----SNQG--KVAMEGKVEH 114
+ T E+ +N ++ PK + + + VFS +++G +V++EG+V
Sbjct: 69 AKREGTPESKTSTNQAI--PKQHKFIVSNVMAQTLGVFSRLTSSASEGPDRVSLEGRVVK 126
Query: 115 KFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV-HMRPMPGMVGLISSNSKD 173
K + +P Y + RE K++ RQ + D V H +P+ I +
Sbjct: 127 KAECRPISDKT--YMSVKREAILKAIEPTRQ--TVQLDRAVNHYKPISNHAANIEHARR- 181
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
K+ E K++R D+ ++ + +F LFE+ + +K LV+ET QP L +
Sbjct: 182 -------KKEEGKKSRDDKEKVMERLFALFEKHQYYNIKDLVRETRQPITHLKEVLKGVC 234
Query: 234 HINLR 238
+ NL+
Sbjct: 235 NYNLK 239
>gi|348516620|ref|XP_003445836.1| PREDICTED: general transcription factor IIF subunit 2-like
[Oreochromis niloticus]
Length = 266
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 36/251 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD-SMQFTM- 68
G+ +L AK + VWL+K P +++ W A + V K+ + Q + FT+
Sbjct: 5 GEVDLTGAKQNTGVWLVKVPKYLSQQW---AKATGRGEVGKLRICKKGNQGKPEVSFTLN 61
Query: 69 -ETT---AVSNDSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------------KVA 107
E T + + +++ P+ + M ++VF+E++ K+
Sbjct: 62 EELTVIDGIEDKTVSAPREHPFTMQSVGGQTLAVFTETSSERSDGSSSGSGAGTGPDKIT 121
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V + + +P E Y RL R + +S R Q +D + +P+
Sbjct: 122 LEGVVVQRAECRP--AVSESYMRLKRLQIEESSKPARLSQQLDKAVTNNYKPV------- 172
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
+N ++ + K+ E KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 173 -ANHDYNREYERKKKEEGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKE 231
Query: 228 FLIPLHHINLR 238
L + N++
Sbjct: 232 ILRDIGIYNVK 242
>gi|326482640|gb|EGE06650.1| transcription initiation factor IIF subunit beta [Trichophyton
equinum CBS 127.97]
Length = 383
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 186 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 242
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 243 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 302
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 303 LKQTLEIVAHL 313
>gi|327298045|ref|XP_003233716.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
gi|326463894|gb|EGD89347.1| transcription initiation factor iif [Trichophyton rubrum CBS
118892]
Length = 381
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 301 LKQTLEIVAHL 311
>gi|154152057|ref|NP_001093809.1| uncharacterized protein LOC511494 [Bos taurus]
gi|151554352|gb|AAI49620.1| LOC511494 protein [Bos taurus]
Length = 257
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 24/221 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
+ +P S M F+ ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTD-GQPASVHAPMEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS- 129
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 -ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKET 180
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR + D+ ++ ++F FE+ + +K LV T QP V+
Sbjct: 181 GKRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYL 221
>gi|326470092|gb|EGD94101.1| transcription initiation factor iif [Trichophyton tonsurans CBS
112818]
Length = 381
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 301 LKQTLEIVAHL 311
>gi|302507152|ref|XP_003015537.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
gi|291179105|gb|EFE34892.1| hypothetical protein ARB_05848 [Arthroderma benhamiae CBS 112371]
Length = 381
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 241 AADKSNFIQIAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKALKAELQQPEVY 300
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 301 LKQTLEIVAHL 311
>gi|315040055|ref|XP_003169405.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
gi|311346095|gb|EFR05298.1| hypothetical protein MGYG_08309 [Arthroderma gypseum CBS 118893]
Length = 381
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY RL ER +S+ R+ + I+ G ++P +
Sbjct: 184 QTAITARVHDEFNCLPVEN--EEYQRLAEERALESLKPKRETKFIEKVPGKMLQPK-TVA 240
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ E K R + EL D+++ F R W K L E QP V+
Sbjct: 241 AADKSNFIQVAKPAKVRAQENKTARMPQNELLDLIYACFRRHKYWPFKSLKAELRQPEVY 300
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 301 LKQTLEIVAHL 311
>gi|393221663|gb|EJD07148.1| transcription initiation factor IIF, beta subunit [Fomitiporia
mediterranea MF3/22]
Length = 334
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 84 YSLNMFKDFVPMSVF---SESNQGK----VAMEGKVEHKFDMKPHEKNMEEYGRLCRERT 136
Y L+M + V + S QG + G+V+H+ ++P K + Y R R RT
Sbjct: 108 YDLDMVNESVENQIVVAESTPTQGSRVRSTILTGRVKHECSLRP--KLTDAYRRRVRMRT 165
Query: 137 NKSMIKNRQIQVIDNDH----GVHMRPMPGMVGLISSNSK-DKKKAQPVKQTEVKRTRRD 191
+ R +++D G R GM S+ S K K +P K T + R
Sbjct: 166 ITANTPKRSAKIMDEAEAGGVGRMNRLGSGMATPSSAFSNLVKPKPKPAKGTYERFARIP 225
Query: 192 RGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R +L D++F L+ +P W+ K L T+QP +
Sbjct: 226 RNQLLDMLFALYRERPRWSAKDLRSRTEQPEAYL 259
>gi|198423704|ref|XP_002119394.1| PREDICTED: similar to RAP30 [Ciona intestinalis]
Length = 252
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 26/223 (11%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G LD + A VWL+K P +A W N + D V K+ ++ + +++ + ++M+
Sbjct: 5 GDKTLDLSGAKHDVWLVKVPKYLATQWLN---APDGMSVGKLRITKNAGRAE-VTYSMDK 60
Query: 71 TAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHEK 123
+S + L FV ++VFS + K AMEG+V K D +P
Sbjct: 61 NLTQANSSEK----FLATDHKFVLQGTCGQSLAVFSTTTGEKRAMEGRVVQKVDCRPIVS 116
Query: 124 NMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQT 183
+ Y +L R + ++ R + + +P+ + I ++ K+K
Sbjct: 117 H--NYMQLKRAQMIEASKPQRTTKQLAEAVKTVYKPVTKIKEQIEYDAMKKEKG------ 168
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFL 226
K+ R D+ L+ I+F FE+ + +K L T QP V FL
Sbjct: 169 --KKMRVDKDVLQSILFNAFEKHQYYNIKDLQNITQQP-VPFL 208
>gi|392595271|gb|EIW84595.1| hypothetical protein CONPUDRAFT_142809 [Coniophora puteana
RWD-64-598 SS2]
Length = 351
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
G++ H+ ++P + Y + RERT RQI++I+ +R G + +SS
Sbjct: 166 GRIRHECSLRPIFN--DSYRKHMRERTRVYNTPQRQIRMIEE---AGVRGGRGGINQLSS 220
Query: 170 NSKD--------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ K K +P K + R R +L D++F LF QP W +K L + T QP
Sbjct: 221 GVNNSGSFSDLVKSKNRPPKGAFERMARMPRNQLLDMLFSLFREQPRWPIKGLRERTQQP 280
Query: 222 AVWF 225
V+
Sbjct: 281 EVYL 284
>gi|62955637|ref|NP_001017832.1| novel protein similar to H.sapiens GTF2F2, general transcription
factor IIF, polypeptide 2, 30kDa (GTF2F2, zgc:110187)
[Danio rerio]
gi|62202165|gb|AAH92783.1| Zgc:110187 [Danio rerio]
gi|182890810|gb|AAI65452.1| Zgc:110187 protein [Danio rerio]
Length = 256
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 102/234 (43%), Gaps = 25/234 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSD---SMQFTMET 70
+L AK + VWL+K P +++ W A + V K L + Q S E
Sbjct: 9 DLTRAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGK--LKIGKAQGKTVVSFNLNEEL 63
Query: 71 TAVSND-----SLNRPKSYSLNM-FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKN 124
T V S+ P+ + M ++VF+ES+ K+A+EG V + + +P
Sbjct: 64 TVVDCSGEKISSVRSPREHPFTMQTVGGQTLAVFTESSD-KIALEGMVVQRAECRP--AV 120
Query: 125 MEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTE 184
E Y +L + + +S R Q ++ + +P+ SN + + K+ E
Sbjct: 121 SESYMKLKKLQIEESTKPLRFSQRLEKAITTNYKPV--------SNHSHNLEYEKRKKEE 172
Query: 185 VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
KR R D+ ++ +++F FE+ + ++ LV T QP ++ L + N R
Sbjct: 173 GKRARADKQKVLEMLFSAFEKHQFYNIRDLVDITKQPVIYLKEILREIGVYNSR 226
>gi|358372641|dbj|GAA89243.1| transcription initiation factor IIF subunit beta [Aspergillus
kawachii IFO 4308]
Length = 383
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 57/276 (20%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--QDSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKREMKKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIM 199
+ R+ ID G ++P + G + + + A+P K E K TR + EL D++
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPAKP-KAQENKTTRMPQNELLDLI 281
Query: 200 FKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
++ F W K L QP + L + H+
Sbjct: 282 YQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHL 317
>gi|118084831|ref|XP_417039.2| PREDICTED: general transcription factor IIF subunit 2 isoform 2
[Gallus gallus]
Length = 262
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 37/250 (14%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD K + +WL+K P +++ W ++AS + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGVKQNTGMWLVKVPKYLSQQW-SKASGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQ-------------GKVAM 108
E A +D +P + S F+ ++VF+ES+ K+++
Sbjct: 60 EELASISDIGGKPAAVSAPREHPFLLQNVGGQTLTVFTESSTESQPEEKSESGSYDKLSL 119
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S R Q +D + +P+
Sbjct: 120 EGIVVQRAECRPAAS--ENYMKLKRFQIEESSKPVRLSQQLDKAVTTNYKPV-------- 169
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
+N + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 170 ANHQYNIEYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKEI 229
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 230 LREIGIYNVK 239
>gi|409081467|gb|EKM81826.1| hypothetical protein AGABI1DRAFT_112060 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 369
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 60 QSDSMQFTMETTAVSNDSL--NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
+ D + M AV N + RPK SL++ P + S + G+++H+ +
Sbjct: 133 EPDCYELDMVNEAVENQIVVAERPKDSSLSVHGTNTPFN----SRARTTILTGRIKHECN 188
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD---- 173
++P E Y + RER K+ K RQI++I+ D GV G G I+ S
Sbjct: 189 LRP--SFTENYRKQMRERHIKANTKQRQIRMIE-DAGVS-----GGRGGINRLSSGVGVG 240
Query: 174 ---------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
K + +P K + R R +L D +F F P+W L+ L +T QP +
Sbjct: 241 SGGAFRDLIKTRQKPAKGGFERMARIPRNQLLDQLFSHFRDTPHWGLRPLRDKTQQPEAY 300
Query: 225 F 225
Sbjct: 301 L 301
>gi|426196707|gb|EKV46635.1| hypothetical protein AGABI2DRAFT_193303 [Agaricus bisporus var.
bisporus H97]
Length = 369
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 60 QSDSMQFTMETTAVSNDSL--NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
+ D + M AV N + RPK SL++ P + S + G+++H+ +
Sbjct: 133 EPDCYELDMVNEAVENQIVVAERPKDSSLSVHGTNTPFN----SRARTTILTGRIKHECN 188
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD---- 173
++P E Y + RER K+ K RQI++I+ D GV G G I+ S
Sbjct: 189 LRP--SFTENYRKQMRERHIKANTKQRQIRMIE-DAGVS-----GGRGGINRLSSGVGVG 240
Query: 174 ---------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
K + +P K + R R +L D +F F P+W L+ L +T QP +
Sbjct: 241 SGGAFRDLIKTRQKPAKGGFERMARIPRNQLLDQLFSHFRDTPHWGLRPLRDKTQQPEAY 300
Query: 225 F 225
Sbjct: 301 L 301
>gi|313569846|ref|NP_001002127.2| general transcription factor IIF, polypeptide 2a isoform 1 [Danio
rerio]
Length = 265
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-- 68
G+ +L AK + VWL+K P +++ W + V K+ +S + +++ + FT+
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGE---VGKLRISKNQGKAE-VSFTLNE 60
Query: 69 -----ETTAVSNDSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------------KV 106
ET + P+ + + ++VF+E++ G K+
Sbjct: 61 ELTTIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPDKI 120
Query: 107 AMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGL 166
A+EG V + + +P E Y RL + + + R Q +D + +P+
Sbjct: 121 ALEGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV------ 172
Query: 167 ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFL 226
+N + K+ E KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 173 --ANHAYNLDYEKRKKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLK 230
Query: 227 IFLIPLHHINLR 238
L + N++
Sbjct: 231 EILRDIGIYNVK 242
>gi|50556122|ref|XP_505469.1| YALI0F15785p [Yarrowia lipolytica]
gi|49651339|emb|CAG78278.1| YALI0F15785p [Yarrowia lipolytica CLIB122]
Length = 366
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 50/262 (19%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME 69
+G +LDTA + VWL++ P + W + ++ + +V++ + + + ++
Sbjct: 54 DGSFDLDTAGLENRVWLVRLPKFLVDKW-SHLDEHTNKRLGQVLIKENTAPGEKQKVSLR 112
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV------------------------------------ 93
+ +S P Y L++ K+ V
Sbjct: 113 LSDTPENS-EIPHEYELDIVKEVVNNTFVFTEKEQKKEKEKEKEEAGSSGAGSSSSAASS 171
Query: 94 -------PMSV-FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNK-SMIKNR 144
P + F+ + K A+ G+V H+ + P K+ Y ++ ++R +
Sbjct: 172 SAGKVSKPSAFPFARTIPKKTALAGRVIHECTVVPSLKDAN-YKKVIQKRKERLQQPPAA 230
Query: 145 QIQVIDNDHGVHMRP-MPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLF 203
++ ++++ GV P + G S + K + + +K + K R +R L DI+FKLF
Sbjct: 231 RVTLLNDLPGVVASSNAPNLRGTGSQSHFMKAQKKDIK-LDGKAVRIERSALLDILFKLF 289
Query: 204 ERQPNWALKQLVQETDQPAVWF 225
E P W+LK L + T QP V+
Sbjct: 290 EEYPYWSLKGLKERTKQPEVYL 311
>gi|350633101|gb|EHA21467.1| transcription initiation factor IIF, beta subunit [Aspergillus
niger ATCC 1015]
Length = 383
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 65/280 (23%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--QDSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKRDMRKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRP---MPGMVG-LISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+ R+ ID G ++P +PG G + + K KAQ E K TR + EL
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPVKAKAQ-----ENKTTRMPQNEL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
D++++ F W K L QP + L + H+
Sbjct: 278 LDLIYQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHL 317
>gi|145253018|ref|XP_001398022.1| transcription initiation factor iif, beta subunit [Aspergillus
niger CBS 513.88]
gi|134083580|emb|CAL00495.1| unnamed protein product [Aspergillus niger]
Length = 383
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 65/280 (23%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASS--QDSQPVAKVILSLDPLQSDSMQFTMET 70
G+LD + A++SVWL + P + + W + ++S D + + + ++ Q+D + ++
Sbjct: 46 GDLDFSAANQSVWLSRLPRSLWEHWAHLSNSAGDDDEEIQIGTMRIEGTQNDLKRVSLRI 105
Query: 71 TAVSNDSLNRPKSYSLN-----------------MFKDF-VP-----MSVFSESNQG--- 104
A D+ + PK Y L +F + +P M VF E+
Sbjct: 106 NA-REDNRDIPKDYLLQRQTITSENVSHLTQNTYLFTERDLPGHENRMVVFGEARSALYE 164
Query: 105 -------------------------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
+ A+ G V +F+ P E EE+ RL ++ ++
Sbjct: 165 SMKRDMRKKERKKKWEPYVRKTVPKQTALVGSVSEEFNCLPVEN--EEFRRLSEKKALEA 222
Query: 140 MIKNRQIQVIDNDHGVHMRP---MPGMVG-LISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+ R+ ID G ++P +PG G + + K KAQ E K TR + EL
Sbjct: 223 LKPKRETVFIDKIPGKMLQPRNALPGEKGAFVQATRPVKPKAQ-----ENKTTRMPQNEL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
D++++ F W K L QP + L + H+
Sbjct: 278 LDLIYQCFREYKYWPFKNLKARLRQPEAYLKQTLEMVAHL 317
>gi|291190817|ref|NP_001167406.1| Transcription initiation factor IIF subunit beta [Salmo salar]
gi|223648348|gb|ACN10932.1| Transcription initiation factor IIF subunit beta [Salmo salar]
Length = 257
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G+ +L AK + VWL+K P +++ W A + V K+ + + +++ + FT+
Sbjct: 5 GEVDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIGKNQGKAE-VAFTLNE 60
Query: 71 TAVSNDSLN-------RPKSYSLNMFK-DFVPMSVF----SESNQGKVAMEGKVEHKFDM 118
DSL P+ + M ++VF SES++ ++++EG V + +
Sbjct: 61 DLTMIDSLGDKPSGVQAPRDHPFTMQTVGGQTLAVFTETQSESSKERISLEGLVVQRAEC 120
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQ 178
+P E Y +L R + + R Q ++ + +P+ S N + +K
Sbjct: 121 RP--AVSESYMKLKRLQIEELSKPLRLSQQLEKAVTTNYKPVANH----SYNLEYDRK-- 172
Query: 179 PVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
K+ E KR R D+ ++ D++F FE+ + +K LV T QP + L + N++
Sbjct: 173 --KKDEGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILRDIGIYNVK 230
>gi|440905270|gb|ELR55673.1| General transcription factor IIF subunit 2, partial [Bos grunniens
mutus]
Length = 227
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 32 VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR 91
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P E Y RL R + +S R Q +D + +P+ I K K+
Sbjct: 92 AECRPAAN--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE 149
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 150 DG--------KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYL 191
>gi|355693889|gb|AER99486.1| proteinral transcription factor IIF, polypeptide 2, 30kDa [Mustela
putorius furo]
Length = 201
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S FV ++VF+ES+ K+++EG V +
Sbjct: 10 VSFTLNEDLANIHDIGGKPASVSTPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQR 69
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P E Y RL R + +S R Q +D + +P+ I K K+
Sbjct: 70 AECRP--AASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE 127
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 128 DG--------KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 169
>gi|358423064|ref|XP_003585581.1| PREDICTED: general transcription factor IIF subunit 2-like [Bos
taurus]
Length = 257
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 102/220 (46%), Gaps = 22/220 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSNDS-----LNRPKSYSLNMFKDFVP-MSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
V ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DVRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR + D+ ++ ++F FE+ + +K LV T QP V+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYL 221
>gi|296488873|tpg|DAA30986.1| TPA: hypothetical protein LOC511494 [Bos taurus]
gi|440898074|gb|ELR49646.1| hypothetical protein M91_07858 [Bos grunniens mutus]
Length = 257
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 22/220 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIRQNQRMWLVKVPKYLSQQWSEAPGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSNDS-----LNRPKSYSLNMFKDFVP-MSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHEPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR + D+ ++ ++F FE+ + +K LV T QP V+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYL 221
>gi|426215262|ref|XP_004001893.1| PREDICTED: general transcription factor IIF subunit 2-like [Ovis
aries]
Length = 257
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM--ETT 71
NL+ + ++ +WL+K P +++ W + S + V K+ ++ + +S+ + FT+ E T
Sbjct: 16 NLEGIQQNQRMWLVKVPKYLSQQWSEASGSGE---VGKLKIATNQGKSE-ISFTLNKELT 71
Query: 72 AVSNDS-----LNRPKSYSLNMFKDFVP-MSVFSESNQGKVAMEGKVEHKFDMKPHEKNM 125
+ ++ P + + D ++V +E + +++G V H+ + +P
Sbjct: 72 DIRGTDGQPAPVHAPTEHQFLLQTDRGQVLTVLTEHAPDQFSLQGTVVHRGECRPAPS-- 129
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
E Y RL R + + R +Q ++ + +P+ +N + + + K+
Sbjct: 130 ENYMRLKRMQIEGASKPARTVQKLEKVVTTNYKPV--------ANHQYNIEYEKRKKETG 181
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
KR + D+ ++ ++F FE+ + +K LV T QP V+
Sbjct: 182 KRVKADKDQVLTLLFAAFEKHQYYNIKDLVGITMQPVVYL 221
>gi|432851971|ref|XP_004067132.1| PREDICTED: general transcription factor IIF subunit 2-like isoform
1 [Oryzias latipes]
Length = 267
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 39/237 (16%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKV-ILSLDPLQSDSMQFTM--ET 70
+L AK + VWL+K P +A+ W A + V K+ I+ L + FT+ E
Sbjct: 8 DLTGAKLNTGVWLVKVPKYLAQQW---AKATGRGEVGKLRIIKKGNLGKPEVSFTLNEEL 64
Query: 71 T---AVSNDSLNRPKSYSLNMFKDFVPM-SVFSESNQG------------------KVAM 108
T + + +++ P+ + M M +VF+ES+ G K+A+
Sbjct: 65 TIIEGIEDKTVSAPRDHPFTMQSVGGQMLAVFTESSSGQSEERSDGSSSGAGSGPDKIAL 124
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V + + +P E Y +L R + +S +R Q + + +P+
Sbjct: 125 EGVVVQRAECRPAVS--ESYMKLKRLQIEESSKPSRLSQQLSKPV-TNYKPV-------- 173
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+N + ++ + K+ E KR R D+ ++ +++F FE+ + +K LV T QP ++
Sbjct: 174 ANHEYNREYEKKKKEEGKRARADKQQVLEMLFSAFEKHQYYNIKDLVDITKQPVIYL 230
>gi|385304830|gb|EIF48833.1| transcription initiation factor tfiif middle subunit [Dekkera
bruxellensis AWRI1499]
Length = 375
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP-HEKNMEEYGRLCRERTNKSMIKNRQIQ 147
FK FVP ++++ K M GKV H+ + P + ++R +M+K + I
Sbjct: 182 FKRFVP---YAKTIPKKTKMVGKVVHECQVIPTKLXXNNKLKLAAQKRFLXNMVKRKHIN 238
Query: 148 VIDN-DHGV-HMRPMPGM-VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFE 204
+ N D G+ + P + G + S++ + +TE + +R D+ L ++F+LF+
Sbjct: 239 YLKNVDTGILQGKAGPNIHTGSTITLSRELAAKREAAKTEGRASRMDKKALMKVLFELFD 298
Query: 205 RQPNWALKQLVQETDQPAVWF 225
+ W +K L ++T+QP V+
Sbjct: 299 KYDYWTMKGLKEKTNQPEVYL 319
>gi|449484507|ref|XP_004175135.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIF
subunit 2 [Taeniopygia guttata]
Length = 307
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHK 115
+ FT+ E A +D +P S S F+ ++VF+E++ K+A+EG V +
Sbjct: 112 VSFTLNEELASISDIGGKPASVSAPREHPFLLQSVGGQTLTVFTETSVDKLALEGIVVQR 171
Query: 116 FDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKK 175
+ +P Y +L R + +S R Q +D + +P+ +N +
Sbjct: 172 AECRPAASX--NYMKLKRLQIEESSKPVRLSQQLDKAVTTNYKPV--------ANHQYNI 221
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ + K+ + KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 222 EYEKKKKEDGKRARADKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYL 271
>gi|47940041|gb|AAH71444.1| General transcription factor IIF, polypeptide 2 [Danio rerio]
Length = 265
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 38/252 (15%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-- 68
G+ +L AK + VWL+K P +++ W + V K+ +S + +++ + FT+
Sbjct: 5 GEVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGE---VGKLRISKNQGKAE-VSFTLNE 60
Query: 69 -----ETTAVSNDSLNRPKSYSLNMFK-DFVPMSVFSESNQG----------------KV 106
ET + P+ + + ++VF+E++ G K+
Sbjct: 61 ELTTIETIGEKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPDKI 120
Query: 107 AMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGL 166
A+ G V + + +P E Y RL + + + R Q +D + +P+
Sbjct: 121 ALGGVVVQRAECRPAVS--ESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPV------ 172
Query: 167 ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFL 226
+N + K+ E KR R D+ ++ D++F FE+ + +K LV T QP ++
Sbjct: 173 --ANHAYNLDYEKRKKEEGKRARADKQQVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLK 230
Query: 227 IFLIPLHHINLR 238
L + N++
Sbjct: 231 EILRDIGIYNVK 242
>gi|321464705|gb|EFX75711.1| hypothetical protein DAPPUDRAFT_306632 [Daphnia pulex]
Length = 272
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 28/238 (11%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQ-----------NQASSQDSQPVAKVILSLDPLQSDS 63
++ + A R VWL+K P ++ W N Q + K+ILS +
Sbjct: 27 MEMSSASRGVWLVKVPKYISSRWDKCPGNITAGQLNITRVQGQKSQVKLILSEAIM---C 83
Query: 64 MQFTMETTAVSNDSL--NRPKSYSLNMF-KDFVPMSVFSESNQGKVAMEGKVEHKFDMKP 120
+Q E L + S +L +F + P + S K+ EGKV K + +P
Sbjct: 84 LQEKGEEPIPKEHGLIVSHITSQTLGVFSQQTTPATTNSPMETEKIIFEGKVAQKLECRP 143
Query: 121 HEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPV 180
Y +L R+ K+ R ++ +D + +P+ S+ K K+
Sbjct: 144 TAN--ASYMKLKRDSLIKAAQPTRIVKQLDRVVQSY-KPI--------SDHKHNKEFDEK 192
Query: 181 KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
K+ E K+ R D+G++ D++F FE+ + +K LV+ T+QP + L + NL+
Sbjct: 193 KKAEGKKARDDKGKVMDMLFAAFEKHQYYNIKDLVKLTNQPVTYLKEILKDVCVYNLK 250
>gi|346469073|gb|AEO34381.1| hypothetical protein [Amblyomma maculatum]
Length = 255
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 29/245 (11%)
Query: 9 GNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS-MQFT 67
G+ ++D A R VWL+K P +A W ++ ++ ++ S S ++FT
Sbjct: 2 GDQDRDVDCTYAARGVWLVKVPKYIASRWSKAPPMSEA---GRLRITKGGANSKSDIRFT 58
Query: 68 METTAVS----NDSLNRPKSY----------SLNMFKDFVPMSVFSESNQGKVAMEGKVE 113
+ V+ D PK + +L +F + +E + GKV +EG V
Sbjct: 59 LSDECVNMKDPADKSAIPKEHRFVISNIANQNLAVFSQNKVVEDGTEHSSGKVYLEGHVV 118
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
K + +P + Y +L R+ K+ RQ++ +D + +P+ ++ K
Sbjct: 119 QKGECRPM--GDDRYMQLKRQIFVKASQPVRQVKQLDRI-VQNYKPV--------ADHKH 167
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLH 233
+ + K+ E K+ R D+ ++ D++F FE+ + +K L + T QP + L +
Sbjct: 168 NLEFEQKKKAEGKKAREDKDKVLDMLFSAFEKHQYYNIKDLEKITRQPVPYLKEILKEIC 227
Query: 234 HINLR 238
+ N +
Sbjct: 228 NYNAK 232
>gi|170096937|ref|XP_001879688.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645091|gb|EDR09339.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 351
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
RPK SL++ +V S + + G+++H+ +++P + Y + +ER K
Sbjct: 140 RPKDPSLSVSTSAAAATVNSRART--TVLTGRIKHECNLRP--AFSQTYRKQMKERHKKY 195
Query: 140 MIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD-------------KKKAQPVKQTEVK 186
RQI++I+ D GV PG G ++ S K K + K T +
Sbjct: 196 NTPVRQIRMIE-DAGV-----PGGRGGVNRLSSGVGVGAGAAFGDLIKVKPKQPKGTFER 249
Query: 187 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R R +L D +F LF P+W ++ L ++T QP +
Sbjct: 250 MARMPRNQLLDQIFSLFRETPHWGIRPLREKTQQPEAYL 288
>gi|405961158|gb|EKC27003.1| General transcription factor IIF subunit 2 [Crassostrea gigas]
Length = 188
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 24/147 (16%)
Query: 94 PMSVFSESNQG--------KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR- 144
P++V ES+ G ++A+EGKV + D +P +K + Y L R++ IKN+
Sbjct: 56 PVTVKQESSSGSVDVVASDRIAVEGKVIQRADCQP-DKTIS-YMNLKRKQLE---IKNKP 110
Query: 145 QIQVIDNDHGVHM-RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLF 203
Q +VI V M +P+ V ++ S DK K + KR R D+ ++ DI+F F
Sbjct: 111 QREVIQITKVVPMYKPVNNHVH--NAPSSDKNKVE-------KRLREDKEKVMDILFNAF 161
Query: 204 ERQPNWALKQLVQETDQPAVWFLIFLI 230
E+ + +K LV T QP + ++F +
Sbjct: 162 EKHQYYNVKDLVTLTKQPIIGRIVFAV 188
>gi|302679342|ref|XP_003029353.1| hypothetical protein SCHCODRAFT_78184 [Schizophyllum commune H4-8]
gi|300103043|gb|EFI94450.1| hypothetical protein SCHCODRAFT_78184 [Schizophyllum commune H4-8]
Length = 364
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKS 139
RPK S + P S + + G+++H+ M+P +Y R R+
Sbjct: 145 RPKDASFGLSGSSQPSQPNSRAR--TTILTGRLKHECTMRPAFN--AKYRNQMRMRSMYH 200
Query: 140 MIKNRQIQVIDN---DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR-TRRDRGEL 195
R + ID D G R G S + D + +P + + +R R R EL
Sbjct: 201 NAPRRATKHIDESGLDKGAVSRLNTGGSLGGPSGAFDFGRPKPKAKGQFERMARMPRNEL 260
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWF 225
D++F LF+ QP WALK L + T QP +
Sbjct: 261 LDMLFNLFKEQPYWALKPLRERTQQPEAYL 290
>gi|254566865|ref|XP_002490543.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030339|emb|CAY68262.1| hypothetical protein PAS_chr1-4_0679 [Komagataella pastoris GS115]
gi|328350932|emb|CCA37332.1| transcription initiation factor TFIIF beta subunit [Komagataella
pastoris CBS 7435]
Length = 372
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 113/281 (40%), Gaps = 61/281 (21%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQF-TMETTA 72
NLD +AD+ VWL++ P +A W++ + + Q + K+ ++ P + + + +
Sbjct: 41 NLDLEEADKKVWLVRLPKFLADKWKD-PKNLNGQELGKLRITQAPASVNVKERPSPQVQI 99
Query: 73 VSNDSLNR---PKSYSLNMFKDFVPMS-VFSESNQGKVAMEGK-------------VEHK 115
+ NDS P Y +N+ K V +FSE N + E VE +
Sbjct: 100 ILNDSSENKELPLRYDVNIHKRVVDNEYIFSERNLKEYKTEANEIASMPEQPELKPVETE 159
Query: 116 FDMKP--------------------------------HE------KNMEEYGRLCRERTN 137
D +P HE +N Y ++ R N
Sbjct: 160 IDPEPPRGFKRYRDESKSYVSYVKTIPKDTAIVGTVIHECQAIPVRNDRNYSKVVESRKN 219
Query: 138 KSMIKNR-QIQVIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
+K + ++ ++DN GV P + + + NS + + ++ E + R + +L
Sbjct: 220 LRYVKPKSKVTLLDNLPGVIQSNITPNL--MRNKNSTFLRSEKKDRRAEGRAIRMPQNQL 277
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHIN 236
D++F LF++ W LK L ++T QP + L + +N
Sbjct: 278 LDVLFGLFDQYEYWTLKGLREKTSQPEAYLKEVLESVAELN 318
>gi|318037396|ref|NP_001187504.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
gi|308323183|gb|ADO28728.1| general transcription factor IIf subunit 2 [Ictalurus punctatus]
Length = 265
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 40/240 (16%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMET 70
G +L AK + VWL+K P +++ W A + V K+ + + +++ + FT+
Sbjct: 5 GDVDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIGKNQGKAE-VSFTLNE 60
Query: 71 TAVSNDSLN---------RPKSYSLNMFKDFVPMSVFSESNQG----------------K 105
+S+ R ++L ++VF+E++ G K
Sbjct: 61 DLTMIESMGEKVSMVRAPREHPFTLQTVGGQT-LAVFTETSSGQSDAEGSSSGTATGPDK 119
Query: 106 VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVG 165
+A+EG V + + + E Y RL R + +S +R Q +D + +P+
Sbjct: 120 IALEGLVVQRAECRAAAN--EHYMRLKRLQIEESSKPHRFSQQLDKAVTTNYKPV----- 172
Query: 166 LISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+N + K+ E KR R DR ++ D++F FE+ + +K LV T QP ++
Sbjct: 173 ---ANHAYNLDYEKKKKEEGKRARADRQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYL 229
>gi|389750468|gb|EIM91639.1| hypothetical protein STEHIDRAFT_144833 [Stereum hirsutum FP-91666
SS1]
Length = 348
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM------RPMP 161
M GK++H+ +++P + E Y + +ERT +M +Q++ +D R
Sbjct: 148 MTGKIKHECNLRP--RLSERYRKRVKERTRMAMSPVKQVKYLDEKGMGVGGQGGINRLSS 205
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G+ + K K + VK + R R +L D++F +F + W +K L + QP
Sbjct: 206 GVTSTVGFTDLSKPKQKGVKGQFERMARMPRNQLLDMLFGIFREREFWPIKLLRERLQQP 265
Query: 222 AVWF 225
V+
Sbjct: 266 EVYL 269
>gi|169863699|ref|XP_001838468.1| hypothetical protein CC1G_09096 [Coprinopsis cinerea okayama7#130]
gi|116500507|gb|EAU83402.1| hypothetical protein CC1G_09096 [Coprinopsis cinerea okayama7#130]
Length = 387
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 92 FVPMSVFSESNQGKVA-MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID 150
F+P +++ + + G+++H+ +++P Y + RER K RQ+ I+
Sbjct: 178 FIPPGAAPANSRARTTILTGRIKHECNLRPSFSAT--YRKQMRERHRKYNTPTRQVMRIE 235
Query: 151 NDHGVHMRPMPGMVGLISSNSKD-------------KKKAQPVKQTEVKRTRRDRGELED 197
D GV G G I+ S + K +P K T + R R +L D
Sbjct: 236 -DAGVS-----GGRGGINRLSSGVGVGAGGAFSDLVRTKPKPTKGTFERMARMPRNQLLD 289
Query: 198 IMFKLFERQPNWALKQLVQETDQPAVWF 225
+F LF Q W++K L + T QP V+
Sbjct: 290 NLFSLFREQQRWSIKPLRERTQQPEVYL 317
>gi|387019065|gb|AFJ51650.1| General transcription factor IIF subunit 2-like [Crotalus
adamanteus]
Length = 262
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 112/251 (44%), Gaps = 39/251 (15%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTME 69
KG LD AK + +WL+K P +++ W N+A + V K+ ++ + +++ + FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKVPKYLSQQW-NKALGRGE--VGKLRIAKNQGRTE-VSFTLN 59
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSES-------------NQGKVA 107
+ D + K+ S++ +D F+ ++VF+ES N K++
Sbjct: 60 EDLANIDGIG-GKATSISAPRDHPFLLQNVGGQTLTVFTESSGESQTDEKSDSSNNEKLS 118
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG V + + +P E Y +L R + +S +D + +P+ I
Sbjct: 119 LEGIVVQRAECRPAAN--ENYMKLKRLQIEESSKPVSWTMQLDKAVTTNYKPVANHQYNI 176
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLI 227
+ K K+ KR R ++ ++ D++F FE+ + +K LV T QP ++
Sbjct: 177 EYDKKKKEDG--------KRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVIYLKE 228
Query: 228 FLIPLHHINLR 238
L + N +
Sbjct: 229 ILREIGIYNFK 239
>gi|343429875|emb|CBQ73447.1| related to TFG2-TFIIF subunit (transcription initiation factor), 54
kD [Sporisorium reilianum SRZ2]
Length = 424
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 105 KVAMEGKVEHKFDMKPHEKNM----------EEYGRLCRERTNKSMIKNRQIQVIDN-DH 153
+ A++ ++ D+KP + + Y L R+R ++ R I+++D+ D
Sbjct: 205 EAALQPQIRSAADVKPGSSSSMGLGGAAPISDSYRELLRKRREEASKPKRTIKMLDSTDA 264
Query: 154 GVHMRPMPGMVGLISSNSKDK-------KKAQPVKQTEVKRTRRDRGELEDIMFKLFERQ 206
G H + G+ ++++ K + K K R + EL D++F LFER
Sbjct: 265 GRHNMLVAGVGAGLANSQKSRFNAAISAKPKSAAAGGGEKFARMPKNELLDLLFTLFERW 324
Query: 207 PNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
W+LK+L ET QP + L + ++ R
Sbjct: 325 QYWSLKRLRSETQQPESYLRETLTGIADLHKR 356
>gi|390598822|gb|EIN08219.1| hypothetical protein PUNSTDRAFT_143873 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDN----DHGVHMRPMPGM 163
+ G V H+ +++P + Y R + R+ + RQI++ID+ G++
Sbjct: 190 LAGAVRHECNVRPMFTS--SYRRRMKARSVAANTPLRQIRMIDDVISSTDGINK------ 241
Query: 164 VGLISSNSKD--------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLV 215
+ ++SS +D K K +P K + R R +L D++F LF +Q W +K L
Sbjct: 242 INMLSSGVQDSSAFRGFVKTKQKPPKGQFERMARMPRNQLLDMLFFLFRQQERWPIKILR 301
Query: 216 QETDQPAVWF 225
+ T QP V+
Sbjct: 302 ERTQQPEVYL 311
>gi|388853672|emb|CCF52640.1| related to TFG2-TFIIF subunit (transcription initiation factor), 54
kD [Ustilago hordei]
Length = 445
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 144 RQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKA----QPVKQTEV-----KRTRRDRG 193
R I+++D+ D G H + G+ G +S++ K + A +P K + K R +
Sbjct: 264 RTIKMLDSTDTGRHNMLVAGVGGGLSNSQKSRFNAAISSKPTKNSGGAGGGEKFARMPKN 323
Query: 194 ELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
EL D++F LFER W+LK+L ET QP + L + ++ R
Sbjct: 324 ELLDMLFALFERWQYWSLKKLRAETQQPESYLREVLTGIADLHKR 368
>gi|320592141|gb|EFX04580.1| transcription initiation factor beta subunit [Grosmannia clavigera
kw1407]
Length = 389
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
F ++ K + G++ H+ + P + EY + ER +M+ Q++ D
Sbjct: 193 FRKAIPKKTTVAGRIRHELNCAPVKNPESEY--ILNERARAAMLPKAQVKFGDAS----- 245
Query: 158 RPMPGMVGL--ISSNS------KDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNW 209
+P ++G I+S+S K + A VK+ E K R +L D++F F R W
Sbjct: 246 KPEFRIIGSGGIASHSYATDFIKTAQTAPKVKKAETKTARMPENDLLDLIFACFARFRFW 305
Query: 210 ALKQLVQETDQPAVWF 225
+++ L E QP ++
Sbjct: 306 SMRALRAEIPQPEIYL 321
>gi|242820387|ref|XP_002487500.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
gi|218713965|gb|EED13389.1| transcription initiation factor iif, beta subunit [Talaromyces
stipitatus ATCC 10500]
Length = 363
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID--NDHGVHMRPMP- 161
+ A+ GKV +F+ P E EY R+ + K++ ++++ID G ++R +
Sbjct: 179 QTALVGKVADEFNCMPVEN--AEYQRISEAKALKALEPREKVRLIDLRQHKGPNVREVAA 236
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G VG +K K + E K TRR+R L D +F LF +W + T+QP
Sbjct: 237 GTVGGFVQQAKPAK----ARTQENKATRRERNVLLDEIFGLFREYSHWKFADIKARTNQP 292
Query: 222 AVWFLIFLIPLHHI 235
+ L + H+
Sbjct: 293 EQYLKETLEMVAHL 306
>gi|392563992|gb|EIW57170.1| hypothetical protein TRAVEDRAFT_168775 [Trametes versicolor
FP-101664 SS1]
Length = 318
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+ G V+H+ +M+P E Y R +ER + R I++ H G + ++
Sbjct: 133 LTGSVKHECNMRP--TLTERYRRQLKERNRAANAPKRTTMRIEDAHPGGR----GEINML 186
Query: 168 SSNSKD-------KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
+S +K+ K K +P K + R R +L D +F+ F+ + W++K L + T Q
Sbjct: 187 TSGAKNHAGFNLVKAKPKPQKGQFERMARMPRDQLLDELFRAFQERERWSIKVLRERTQQ 246
Query: 221 PAVWF 225
P +
Sbjct: 247 PEAYL 251
>gi|296423716|ref|XP_002841399.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637637|emb|CAZ85590.1| unnamed protein product [Tuber melanosporum]
Length = 370
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTA 72
G+LD +K D++VWL+K P VA+ W D++ + ++ ++P + +++ ++E
Sbjct: 38 GDLDMSKGDKAVWLVKLPSFVAERWN---EIDDNEEIVLGVVKVNPKDTSNLKLSLERNQ 94
Query: 73 VSNDSLNRPKSYSLNM 88
+ D + P Y L +
Sbjct: 95 ANGDEI--PTEYDLRI 108
>gi|119180086|ref|XP_001241550.1| hypothetical protein CIMG_08713 [Coccidioides immitis RS]
Length = 370
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 49/266 (18%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPL------------- 59
G+LD A A + VWL + P ++ W+N + D + + +SL L
Sbjct: 43 GDLDFANAAQDVWLTRIPKIL---WENWSKLDDDEEIQIGTISLRLLDIPQNEGVPKDYN 99
Query: 60 ------QSDSMQFTMETTAV-SNDSLNRPKSYSLNMFKDFVPMS---VFSE--------S 101
+D + ++ T + + L K + +F + P V+ + +
Sbjct: 100 LKRQNINADRTAYAVQNTFIFTEKDLPGYKDRAHLLFNENQPHGRSYVYEQMKRDSRKKA 159
Query: 102 NQGK------------VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVI 149
N+ K A+ +V +F+ P E EEY R+ +R +++ R+ + I
Sbjct: 160 NKKKWEPYTRKTIPKQTAIAARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRETKFI 217
Query: 150 DNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNW 209
+ G ++P SN K ++ + K R + EL D+++ F R W
Sbjct: 218 ERVTGKMLQPKTAQAA-DKSNFIQVTKPPKIRTQDNKTARMPQNELLDLIYACFRRYRYW 276
Query: 210 ALKQLVQETDQPAVWFLIFLIPLHHI 235
K L E QP + L + H+
Sbjct: 277 PFKSLKAELKQPEAYLKQTLEMVAHL 302
>gi|639703|gb|AAA61642.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae]
Length = 400
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPHYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|413949785|gb|AFW82434.1| hypothetical protein ZEAMMB73_178832 [Zea mays]
Length = 96
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 5/53 (9%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-----VAKVILSLDPLQSD 62
L+TA+ADRSVWLMKCP VV+++WQ ++S VAKV+LSLD L+ +
Sbjct: 17 LETARADRSVWLMKCPPVVSRAWQAASASSSDAANANPVVAKVVLSLDLLRQE 69
>gi|323337655|gb|EGA78900.1| Tfg2p [Saccharomyces cerevisiae Vin13]
Length = 400
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|259146508|emb|CAY79765.1| Tfg2p [Saccharomyces cerevisiae EC1118]
Length = 400
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|365760663|gb|EHN02368.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 400
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++ R VWL++ P+ +A+ W+++ ++ Q + K+ + D + T+
Sbjct: 58 DLDLERSSRQVWLVRLPMFLAEKWRDR-NNLHGQELGKI-----RINKDGSKITLVLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|398365043|ref|NP_011519.3| Tfg2p [Saccharomyces cerevisiae S288c]
gi|1729818|sp|P41896.2|T2FB_YEAST RecName: Full=Transcription initiation factor IIF subunit beta;
AltName: Full=ATP-dependent helicase TFG2; AltName:
Full=TFIIF medium subunit; AltName: Full=TFIIF-beta;
AltName: Full=Transcription factor G 54 kDa subunit
gi|1322961|emb|CAA96988.1| TFG2 [Saccharomyces cerevisiae]
gi|51013193|gb|AAT92890.1| YGR005C [Saccharomyces cerevisiae]
gi|151943292|gb|EDN61605.1| transcription initiation factor TFIIF middle subunit [Saccharomyces
cerevisiae YJM789]
gi|190406965|gb|EDV10232.1| transcription initiation factor IIF beta subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207345246|gb|EDZ72129.1| YGR005Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273879|gb|EEU08800.1| Tfg2p [Saccharomyces cerevisiae JAY291]
gi|285812203|tpg|DAA08103.1| TPA: Tfg2p [Saccharomyces cerevisiae S288c]
gi|323309114|gb|EGA62342.1| Tfg2p [Saccharomyces cerevisiae FostersO]
gi|323333468|gb|EGA74862.1| Tfg2p [Saccharomyces cerevisiae AWRI796]
gi|349578225|dbj|GAA23391.1| K7_Tfg2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765618|gb|EHN07125.1| Tfg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299264|gb|EIW10358.1| Tfg2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 400
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|212545717|ref|XP_002153012.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
gi|210064532|gb|EEA18627.1| transcription initiation factor iif, beta subunit [Talaromyces
marneffei ATCC 18224]
Length = 364
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVID--NDHGVHMRPMPG 162
+ A+ GKV +F+ P E EY R+ + K++ ++++ID G ++R +
Sbjct: 179 QTALVGKVADEFNCMPVEN--AEYQRISEAKALKALEPKEKVRLIDLRQHKGPNVREV-- 234
Query: 163 MVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA 222
G + + K +P Q E K TRR+R L D +F LF +W + T+QP
Sbjct: 235 AAGTVGGFVQQAKPLKPRTQ-ENKATRRERNVLLDEIFGLFREYSHWKFADIKARTNQPE 293
Query: 223 VWFLIFLIPLHHI 235
+ L + H+
Sbjct: 294 QYLKETLEMVAHL 306
>gi|443721667|gb|ELU10906.1| hypothetical protein CAPTEDRAFT_544 [Capitella teleta]
Length = 211
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 99 SESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGV-HM 157
S SN+ ++++EGKV + + KP + + + +R++ N QV+ D V +
Sbjct: 59 SSSNE-ELSLEGKVIQRAECKP----VADSNYMALKRSSFETSNNPARQVVHLDKAVLNY 113
Query: 158 RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE 217
+P ++ ++K K + KR R D+ + +++F FE+ + LK LV+
Sbjct: 114 KPKSIHSAMVEMDNKPKDQ---------KRMRMDKDRVMEMLFSAFEKHQYYNLKDLVKI 164
Query: 218 TDQPAVWFLIFLIPLHHINLRC 239
TDQP V+ L + + N++
Sbjct: 165 TDQPVVFLKEILREIGNYNMKA 186
>gi|401840264|gb|EJT43155.1| TFG2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 400
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++ R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSSRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLVLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>gi|393245345|gb|EJD52856.1| hypothetical protein AURDEDRAFT_111380 [Auricularia delicata
TFB-10046 SS5]
Length = 359
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSE-------SNQGKVAMEGKVE 113
D M+ TA L R K Y L M V V +E S GK+
Sbjct: 116 DPAALYMKLTAELEAELQRAKEYELQMIDLNVNNQLVIAERDLTDPPSRTKATTRNGKIR 175
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQI----QVIDND------HGVHMRPMPGM 163
H+ +++P Y R+ +ER + + R I +V++ GV P
Sbjct: 176 HECNLQPIMNA--RYRRIIKERVRIANMSKRPIMRMEEVLETQAINRLASGVPSGPP--- 230
Query: 164 VGLISSNSKDKKKAQP-VKQTEVKR-TRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+SS + + +P ++ E +R R R EL D +F+ F+ +P+W+LK+L T QP
Sbjct: 231 ---VSSTWQPSRSQKPQARKGEFERFARMPRNELYDALFERFKEKPDWSLKELRARTQQP 287
Query: 222 AVWF 225
+
Sbjct: 288 EAYL 291
>gi|358394163|gb|EHK43564.1| hypothetical protein TRIATDRAFT_167360, partial [Trichoderma
atroviride IMI 206040]
Length = 373
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R + ++Q+I + + PG
Sbjct: 194 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFDAENSKTKLQIISRNKASSII-NPGAT 250
Query: 165 GLISSNSKDKKKAQPV---KQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G +S K A P K+ E+ K TR + +L D++F F + W++K L Q T Q
Sbjct: 251 GSVSWGGNFIKNAAPTTKPKKGEILKATRIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 310
Query: 221 PAVWF 225
P +
Sbjct: 311 PDSYL 315
>gi|119629132|gb|EAX08727.1| general transcription factor IIF, polypeptide 2, 30kDa, isoform
CRA_b [Homo sapiens]
Length = 181
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM 160
E Y RL R + +S R Q +D + +P+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV 156
>gi|19073998|ref|NP_584604.1| TRANSCRIPTION INITIATION FACTOR TFIIF BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19068640|emb|CAD25108.1| TRANSCRIPTION INITIATION FACTOR TFIIF BETA SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 228
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 24 VWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSDSMQFTMETTAVSN 75
+WL K PL +A+ Q+ + + +LSL S +F + S
Sbjct: 12 IWLAKVPLFLAERILGQSREAEIGELEITKATSTEPAVLSLRL----SKEFCVGGFPSSF 67
Query: 76 DSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
D +P+ ++ + + +++ +EG + ++ + P E N EEY R R+
Sbjct: 68 DVKIKPRDNNMYVIR----------THENNADVEGMINNECYITP-EVN-EEYLRYKRDV 115
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
KS K +QVID G + + ++ +KK K KR R + E+
Sbjct: 116 GFKSDSKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KRERLGKNEV 171
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWF 225
D++FK FE+ P+W +K L QP +
Sbjct: 172 IDMVFKAFEKYPSWTVKDLADFCGQPVAFI 201
>gi|441614423|ref|XP_003270182.2| PREDICTED: general transcription factor IIF subunit 2 [Nomascus
leucogenys]
Length = 312
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 116 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 171
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 172 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 231
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM 160
E Y RL R + +S R Q +D + +P+
Sbjct: 232 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV 267
>gi|401625726|gb|EJS43721.1| tfg2p [Saccharomyces arboricola H-6]
Length = 399
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 210 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 267
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 268 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 324
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ + Q + K+ ++ D + T+
Sbjct: 57 DLDLERSNRQVWLVRLPMFLAEKWRDRNNLH-GQELGKIRIN-----KDGSKITLLLNEN 110
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 111 DNDSI--PHEYDLELTKKVVENEYVFTEQN 138
>gi|1362632|pir||S55766 transcription initiation factor TFIIF small chain - fruit fly
(Drosophila melanogaster) (fragments)
Length = 165
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 48/200 (24%)
Query: 26 LMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYS 85
L+K P +A+ W+ ++ D V K+ ++ P Q + ++ ++ D P+ Y
Sbjct: 1 LVKVPKYIAQKWEKAPTNMD---VGKLRINKTPGQKAQVSLSLTPAVLALD----PEEY- 52
Query: 86 LNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ 145
MEG++ K + +P N Y +L E K+ R+
Sbjct: 53 ----------------------MEGRIVQKLECRPIADNC--YMKLKLESIRKASEPQRR 88
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFER 205
+Q ID I N K+ + + K+ E K+ R D+ + D++F FE+
Sbjct: 89 VQPIDK---------------IVQNFKNIEYRER-KKAEGKKARDDKNAVMDMLFHAFEK 132
Query: 206 QPNWALKQLVQETDQPAVWF 225
+ +K LV+ T+QP +
Sbjct: 133 HQYYNIKDLVKITNQPISYL 152
>gi|343959718|dbj|BAK63716.1| transcription initiation factor IIF subunit beta [Pan troglodytes]
Length = 181
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPM 160
E Y RL R + +S R Q +D + +P+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV 156
>gi|449329311|gb|AGE95584.1| transcription initiation factor tfIIf beta subunit [Encephalitozoon
cuniculi]
Length = 228
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 24 VWLMKCPLVVAKSWQNQASSQD--------SQPVAKVILSLDPLQSDSMQFTMETTAVSN 75
+WL K PL +A+ Q+ + + +LSL S +F + S
Sbjct: 12 IWLAKVPLFLAERILGQSREAEVGELEITKATSTEPAVLSLRL----SKEFCVGGFPSSF 67
Query: 76 DSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRER 135
D +P+ ++ + + +++ +EG + ++ + P E N EEY R R+
Sbjct: 68 DVKIKPRDNNMYVIR----------THENNADVEGMINNECYITP-EVN-EEYLRYKRDV 115
Query: 136 TNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
KS K +QVID G + + ++ +KK K KR R + E+
Sbjct: 116 GFKSDSKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KRERLGKNEV 171
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWF 225
D++FK FE+ P+W +K L QP +
Sbjct: 172 IDMVFKAFEKYPSWTVKDLADFCGQPVAFI 201
>gi|258577985|ref|XP_002543174.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903440|gb|EEP77841.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 295
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ KV +F+ P E EEY R+ +R +++ ++ + I+ G ++P
Sbjct: 100 QTAIAAKVHDEFNCLPVEN--EEYQRIAEKRALEALKPKKETKFIERVTGKMLQPKTAQ- 156
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K V+ + K TR + EL D+++ F R W K L E QP +
Sbjct: 157 DADKSNFIQVTKPPKVRAQDNKTTRMPQNELLDLVYACFRRYRYWPFKSLKAELKQPEAY 216
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 217 LKQTLEMVAHL 227
>gi|444321913|ref|XP_004181612.1| hypothetical protein TBLA_0G01470 [Tetrapisispora blattae CBS 6284]
gi|387514657|emb|CCH62093.1| hypothetical protein TBLA_0G01470 [Tetrapisispora blattae CBS 6284]
Length = 399
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 105 KVAMEGKVEHKFDMKP--HEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMP 161
K A+ G + H+ + P H+ N Y ++ +R N N++ I +D GV M
Sbjct: 205 KTAVIGTICHECQVMPSMHDPN---YNKIVEQRRNIVKYNNKERITTLDETVGVTM-SHT 260
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 261 GM-SMRSDNSNFLKVGREKTKNNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 319
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+L+ +R VWL++ P+ +AK W+++ + Q + K+ + D + +
Sbjct: 52 DLNLTNNNRQVWLVRLPMFLAKVWRDRNNLH-GQELGKI-----KINKDGSKIKLMLNEN 105
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 106 DNDSI--PHEYDLELTKKVVENEFVFTEQN 133
>gi|392866571|gb|EAS27802.2| transcription initiation factor iif [Coccidioides immitis RS]
Length = 382
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ +R +++ R+ + I+ G ++P
Sbjct: 187 QTAIAARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRETKFIERVTGKMLQPKTAQA 244
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K ++ + K R + EL D+++ F R W K L E QP +
Sbjct: 245 A-DKSNFIQVTKPPKIRTQDNKTARMPQNELLDLIYACFRRYRYWPFKSLKAELKQPEAY 303
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 304 LKQTLEMVAHL 314
>gi|303388395|ref|XP_003072432.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303301572|gb|ADM11072.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 227
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 46/228 (20%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
L+T + +WL K PL +A+ ILSL + T+ ++
Sbjct: 3 LNTNNKNTKIWLAKVPLFLAER----------------ILSL------GGETTIGELDIT 40
Query: 75 NDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVA-----------------MEGKVEHKFD 117
+ P SL + K+F F S + KV +EG + ++
Sbjct: 41 KATSTEPAVLSLKLSKEFCEGG-FPSSFEVKVKPRDNSMYVIRAYENNADVEGVINNECY 99
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+ P EY R +E KS K +QVID G + + ++ +KK
Sbjct: 100 ITPEING--EYLRYKKEAGFKSDAKKSDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKM 157
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K KR R + E+ D++FK FE+ P+W +K L QP +
Sbjct: 158 LMDK----KRERLGKNEVIDMVFKAFEKYPSWTVKDLADFCGQPVAFI 201
>gi|429966047|gb|ELA48044.1| hypothetical protein VCUG_00467 [Vavraia culicis 'floridensis']
Length = 270
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
LDT + SVWL K P ++K + S + + + D S+ T+
Sbjct: 47 LDTKTKEVSVWLAKLPPFLSKKLLSFNSDTEIGYLNISTATSDAPAQVSIGITLS----- 101
Query: 75 NDSLNRPKSYSLNMFKDFVPMSVFSESN--QGKVAMEGKVEHKFDMKPHE-KNMEEYGRL 131
+ P ++++ + PM V ++ +GKV E V FD E K MEE
Sbjct: 102 ----DVPLNFTIRFNEISQPMYVLKGNDRIEGKVVKEVFVNPVFDNAYLEFKKMEEVSAA 157
Query: 132 CRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRD 191
+ T Q+ID G V + S ++ +KK + KR R +
Sbjct: 158 AQPST----------QIIDYMKEGRKTDRFGTVSELESLARRRKK----QLQSQKRERLE 203
Query: 192 RGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
R E+ D++FK FE+ +W K L + QP +
Sbjct: 204 RNEVMDMVFKAFEKFDSWTAKDLADFSGQPVAY 236
>gi|402588061|gb|EJW81995.1| hypothetical protein WUBG_07095 [Wuchereria bancrofti]
Length = 271
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 45/244 (18%)
Query: 8 HGNGK----GNLDTAKADRSVWLMKCPLVVAKSWQ----------------NQASSQD-- 45
+ NGK ++DT A R VWL+K P +++ W+ N+ SS D
Sbjct: 2 NSNGKRKFSDHVDTDCAKRGVWLVKVPRYLSEIWEKNVGYDVGRLIYLGYDNEESSSDSF 61
Query: 46 ------SQPVAKVILSLDPLQSDSMQFTM--ETTAVSNDSLNRPKSYSLNMFKDFVPMSV 97
S P + P +S FT+ E + V D N+ + + +D ++
Sbjct: 62 LNSLSGSNPSTSRNNRIGPTKSKQTSFTIPNEHSFVIGDIRNQSLAV---LCEDKSGLNE 118
Query: 98 FSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
++ G++++EG+V + D +P + ++Y R+ ++ KS R ++ ++ V
Sbjct: 119 DADICSGRLSIEGRVVKRADCRPPQ--TDDYMRMKIKQIEKSSQPKRHVKQMEKAE-VKF 175
Query: 158 RPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQE 217
+P+ ++ + + K E K R D+ + +F FE+ + L L +
Sbjct: 176 KPIAVHAEMLERSRRKK---------EQKTVRADKDVVRQAIFHAFEKHQYYRLVDLQKL 226
Query: 218 TDQP 221
T QP
Sbjct: 227 TSQP 230
>gi|358056590|dbj|GAA97559.1| hypothetical protein E5Q_04237 [Mixia osmundae IAM 14324]
Length = 399
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
G+V H+ +P ++ + Y + R+R + R +Q ++ D R G + L S
Sbjct: 180 GRVAHECQARPDFES-DVYRAIIRKRIEVAEKPKRVVQALNEDMATSNRLASGALRLKQS 238
Query: 170 -NSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KA+P + K R R E+ D + LF W+L+ + + QP W
Sbjct: 239 LMTPSLVKARPKTAADQKLARAPRAEVTDQIMALFSTHEYWSLRNIKERIAQPDAWL 295
>gi|195380583|ref|XP_002049050.1| GJ21374 [Drosophila virilis]
gi|194143847|gb|EDW60243.1| GJ21374 [Drosophila virilis]
Length = 247
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 84/222 (37%), Gaps = 49/222 (22%)
Query: 12 KGNLDTAKADRSVWLMKCPLVVAKSWQN------------QASSQDSQPV-AKVILSLDP 58
K +D +KA R +WL+K P VA+ W+ + S D +P K+ILS
Sbjct: 8 KKKMDMSKASRGIWLVKVPNYVAQMWEQAPNDMQVATMRMEKSGDDKEPAKVKLILS--- 64
Query: 59 LQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDM 118
D MQ + S L K+ K +FS + MEG V HK +
Sbjct: 65 --QDLMQLAPDKLLASEHDLKLCKA-----IKGARLTGIFSTVDDTDSVMEGWVTHKMEC 117
Query: 119 KPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQ 178
P +C N +K +Q + GV RPM L K +
Sbjct: 118 LP----------IC----NAQYLKMKQQSI----RGV--RPMRSAEALNHIVKSYKPVSN 157
Query: 179 PVKQTEVKRTRRD------RGELEDIMFKLFERQPNWALKQL 214
+ + R+D + + D++F+ FE+ + LK L
Sbjct: 158 HAHNKDDGKRRKDATKVLSKENIMDMLFQAFEKHQYYTLKDL 199
>gi|25151550|ref|NP_741661.1| Protein Y39B6A.36 [Caenorhabditis elegans]
gi|21038853|emb|CAD31828.1| Protein Y39B6A.36 [Caenorhabditis elegans]
Length = 263
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 46/219 (21%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSLDPLQSDSM 64
++D A RS+WL+K P +++ W Q +Q AK ++ P
Sbjct: 10 DVDCELAKRSIWLVKVPRYLSELWDANEGNVVGKLQIGAQVELHTAKGLIHPKP------ 63
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQG----------KVA 107
E T S+ ++ +P++ + F+ MSV SE QG K+A
Sbjct: 64 ---KEPTEGSSSTVTQPEASEIPTEYSFILHDVKSQTMSVLSEDKQGLGADAPIKTGKLA 120
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+EG++ K + +P + +Y ++ K+ + +++I+ V +P +
Sbjct: 121 IEGRIIKKAECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIEKA-AVKFKP-------V 170
Query: 168 SSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQ 206
S +++D K++ K+ K R DR L +FK FE+
Sbjct: 171 SVHAEDMIKSKQ-KKDGAKTYRADRDVLRGALFKAFEKH 208
>gi|303321147|ref|XP_003070568.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240110264|gb|EER28423.1| Transcription initiation factor IIF, beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035964|gb|EFW17904.1| transcription initiation factor iif [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ +V +F+ P E EEY R+ +R +++ R + I+ G ++P
Sbjct: 187 QTAIAARVHDEFNCLPVEN--EEYHRIAEKRALEALKPKRNTKFIERVTGKMLQPKTAQA 244
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
SN K ++ + K R + EL D+++ F R W K L E QP +
Sbjct: 245 A-DKSNFIQVTKPPRIRTQDNKTARMPQNELLDLIYACFRRYRYWPFKSLKAELKQPEAY 303
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 304 LKQTLEMVAHL 314
>gi|432112402|gb|ELK35197.1| General transcription factor IIF subunit 2 [Myotis davidii]
Length = 273
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 132 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 187
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 188 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 247
Query: 123 KNMEEYGRLCRERTNKS 139
E Y RL R + +S
Sbjct: 248 S--ENYMRLKRLQAERS 262
>gi|149248558|ref|XP_001528666.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448620|gb|EDK43008.1| hypothetical protein LELG_01186 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 403
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 89 FKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ--- 145
+ ++P F ++ K ++ GKV H + P +N Y L ++R +S++K +
Sbjct: 208 IRKYIP---FVKTIPKKTSLLGKVCHDCTVVPL-RNDSSYAELLKKR--ESLVKAPERPK 261
Query: 146 IQVIDNDHGV-HMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFE 204
+ +++ GV P + G ++ S K QP ++E + R R +L D++F+ FE
Sbjct: 262 VTLLNEIPGVIQSNAGPSIKG--NNTSVFLKSTQPKSKSEGRAIRMPRKDLLDLLFRCFE 319
Query: 205 RQPNWALKQLVQETDQPAVWF 225
W++K L + T QP +
Sbjct: 320 EYEYWSIKGLKERTKQPESYL 340
>gi|395326223|gb|EJF58635.1| transcription initiation factor IIF beta subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 317
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 31/222 (13%)
Query: 24 VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSN-DSLNRPK 82
VWL+K P + + W A ++ P+A + + + + + + N ++ +
Sbjct: 37 VWLVKIPRHLMERWS--AIDEEGVPLATIRVYHNAETATGKKPRIMLLLPPNPETGAEAE 94
Query: 83 SYSLNMFKDFVPMSVF---------SESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCR 133
Y ++M D V + ++S + G+V+H+ +++P + Y + +
Sbjct: 95 EYEMDMVNDDVENQIVVAEREKEPGTQSRARTTILTGRVKHECNLRPILTD--RYRQRLK 152
Query: 134 ERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI----------SSNSKDKKKAQPVKQT 183
R + R+I++I++ +PG G I S S + KA+P K
Sbjct: 153 MRNLSANQPTRRIRMIED-------AVPGGRGNINMLTSGAAQHSPFSLVRPKAKPAKGQ 205
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ R R +L D +FK F+ + W++K L + T QP +
Sbjct: 206 FERMARMPRDQLLDELFKAFQERERWSIKALRERTQQPEAYL 247
>gi|156844255|ref|XP_001645191.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
gi|156115849|gb|EDO17333.1| hypothetical protein Kpol_1062p42 [Vanderwaltozyma polyspora DSM
70294]
Length = 408
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRPMP 161
K ++ G V H+ + P N Y ++ +R N ++KN +I +D GV M
Sbjct: 202 KTSISGTVCHECQVMPS-MNDPNYHKIVEQRRN--IVKNSNKERITTLDETVGVTM-SHT 257
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 258 GM-SMKSDNSNFLKVGREKAKANIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 316
>gi|358387418|gb|EHK25013.1| hypothetical protein TRIVIDRAFT_128281, partial [Trichoderma virens
Gv29-8]
Length = 368
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R + ++Q+I + + PG
Sbjct: 189 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFEVENSKSKLQIISRNKASSII-NPGSA 245
Query: 165 GLISSNSKDKKKA----QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G +S K A +P K +K TR + +L D++F F + W++K L Q T Q
Sbjct: 246 GSVSWGGNFIKNAPSTVKPKKGEILKATRIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 305
Query: 221 P 221
P
Sbjct: 306 P 306
>gi|366987389|ref|XP_003673461.1| hypothetical protein NCAS_0A05170 [Naumovozyma castellii CBS 4309]
gi|342299324|emb|CCC67075.1| hypothetical protein NCAS_0A05170 [Naumovozyma castellii CBS 4309]
Length = 412
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N N++ I ++ GV MR GM
Sbjct: 215 KTAIVGTVCHECQVMPS-MNDPNYNKIVEQRRNIVKSNNKERITTLEETVGVTMR-HAGM 272
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 273 -SMKSDTSNFLKVGREKTKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 329
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R +WL++ P+ +A++W+++ ++ Q + K+ ++ D + +
Sbjct: 62 DLDLSRSNRQIWLVRLPMFLAETWRDR-NNLHGQELGKIRIN-----KDGSKIKLMLNEN 115
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
ND++ P Y L + K V +F+E N
Sbjct: 116 DNDTI--PHEYDLELTKKIVENEYIFTEQN 143
>gi|413945987|gb|AFW78636.1| hypothetical protein ZEAMMB73_145723 [Zea mays]
Length = 76
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 7/52 (13%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQP-------VAKVILSLDPL 59
L+TA+ADRSVWLMKCP VV+++WQ ++S S VAKV+LSLD L
Sbjct: 8 LETARADRSVWLMKCPPVVSRAWQAASASASSSDAANANPVVAKVVLSLDLL 59
>gi|403416077|emb|CCM02777.1| predicted protein [Fibroporia radiculosa]
Length = 329
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 108 MEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLI 167
+ G+V+H+ +++P + Y + ++R + +QI I+ + GV R G + ++
Sbjct: 132 LTGRVKHECNLRP--VFTDRYRQRLKQRAVAANTPKKQIMWIE-EAGVGGR---GNINML 185
Query: 168 SSN-------SKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
+S S K K +P K + R R +L D +F+ F+ + +W++K L + T Q
Sbjct: 186 TSGVTNAVPFSFGKPKPKPAKGQFERMARMPRDQLLDGLFRAFQEREHWSIKVLRERTQQ 245
Query: 221 PAVWF 225
P +
Sbjct: 246 PEAYL 250
>gi|340516471|gb|EGR46719.1| transcription factor IIF beta subunit [Trichoderma reesei QM6a]
Length = 357
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ ++D++ +N+ E L +R ++ ++Q+I + + PG
Sbjct: 175 KTKIFGKI--RYDLRVEPRNLREEEELLAKRIFEAENSKSKLQIISRNKASSII-NPGSA 231
Query: 165 GLISSNSKDKKKAQPV---KQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G ++ K A V K+TEV K R + +L D++F F + W++K L Q T Q
Sbjct: 232 GSVNWGGNFIKNAPSVLKPKKTEVLKAARIPKNQLLDLIFDCFRQYQYWSMKALRQRTQQ 291
Query: 221 P 221
P
Sbjct: 292 P 292
>gi|449540474|gb|EMD31465.1| hypothetical protein CERSUDRAFT_119685 [Ceriporiopsis subvermispora
B]
Length = 324
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 54/234 (23%)
Query: 24 VWLMKCP----------------LVVAKSWQNQASSQDSQPVAKVILSLDP------LQS 61
VWL+K P L + + SS +P +++L L P +
Sbjct: 41 VWLVKIPKHLMEKWSSIDQEGVHLATIRVYHQAESSTGKKP--RILLKLPPNPANPDGEG 98
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPH 121
D + M AV N + + + S + G+V+H+ +++P
Sbjct: 99 DEYEMDMVNEAVENQVVVAEREKEPG-----------TASRARTTILTGRVKHECNLRP- 146
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS------SNSKD-- 173
E Y + +ER + RQI I++ +PG G I+ S++K
Sbjct: 147 -VFSERYRQRIKERHRVANAPARQIMRIED-------ALPGGRGNINMLTSGVSHTKPFD 198
Query: 174 --KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ K +P K + R R +L D +FK F+ + +W++K L + T QP +
Sbjct: 199 LVRPKPKPPKGQFERMARMPRDQLLDELFKAFQEREHWSIKVLRERTQQPEAYL 252
>gi|71017955|ref|XP_759208.1| hypothetical protein UM03061.1 [Ustilago maydis 521]
gi|46098829|gb|EAK84062.1| hypothetical protein UM03061.1 [Ustilago maydis 521]
Length = 432
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 144 RQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV----------KRTRRDR 192
R I+++D+ D G H + G+ G ++++ K + A + K R +
Sbjct: 258 RTIKMLDSTDTGRHNMLVAGVGGGLANSQKSRFNAAIASKPSKSGSGGASSTEKFARMPK 317
Query: 193 GELEDIMFKLFERQPNWALKQLVQETDQPAVWF---LIFLIPLH 233
EL D++F LFER W+LK+L ET QP + L+ + LH
Sbjct: 318 NELLDMLFGLFERWQYWSLKKLRTETQQPESYLKETLLGIADLH 361
>gi|255715141|ref|XP_002553852.1| KLTH0E08646p [Lachancea thermotolerans]
gi|238935234|emb|CAR23415.1| KLTH0E08646p [Lachancea thermotolerans CBS 6340]
Length = 382
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFER 205
+ V+D GV M GM + S NS K + + ++ R + EL D +FKLF+
Sbjct: 238 VTVLDQTPGVTM-SNAGM-SMRSDNSNFLKVGREKAKNNIRAIRMPKKELLDFLFKLFDE 295
Query: 206 QPNWALKQLVQETDQPAVWF 225
W+LK L + T QP V+
Sbjct: 296 YDYWSLKGLKERTKQPEVYL 315
>gi|240275599|gb|EER39113.1| transcription initiation factor iif [Ajellomyces capsulatus H143]
gi|325091431|gb|EGC44741.1| transcription initiation factor iif [Ajellomyces capsulatus H88]
Length = 387
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P +
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETLYIGKVSGEMLKPK-TVA 246
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
S K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 247 AADKSTFIQVAKPPKVRAQENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQPEAY 306
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 307 LKQTLEMVAHL 317
>gi|225561990|gb|EEH10270.1| transcription initiation factor iif [Ajellomyces capsulatus G186AR]
Length = 387
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P +
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETLYIGKVSGEMLKPK-TVA 246
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
S K V+ E K R + EL D+++ F R W K L E QP +
Sbjct: 247 AADKSTFIQVAKPPKVRAQENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELKQPEAY 306
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 307 LKQTLEMVAHL 317
>gi|367013210|ref|XP_003681105.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
gi|359748765|emb|CCE91894.1| hypothetical protein TDEL_0D03100 [Torulaspora delbrueckii]
Length = 399
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEE--YGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRP 159
K ++ G V H+ + P +M++ Y ++ +R N ++KN +I +D GV M
Sbjct: 202 KTSIVGTVCHECQVMP---SMDDPNYHKIVEQRRN--IVKNYNKERITTLDQTVGVTM-S 255
Query: 160 MPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 219
GM + S NS K A+ ++ K R + E+ D +FKLF+ W+LK L + T
Sbjct: 256 HTGM-SMRSDNSNFLKVAREKSKSNTKYIRMPKKEILDYLFKLFDEYDYWSLKGLKERTR 314
Query: 220 QP 221
QP
Sbjct: 315 QP 316
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +K++R VWL++ P+ +A+ W+++ + Q + K+ ++ D + +
Sbjct: 49 DLDLSKSNRQVWLVRLPMFLAEKWRDRNNIH-GQELGKIRIN-----KDGSKIKLVLNEN 102
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V +F+E N
Sbjct: 103 DNDSI--PHQYDLELTKKVVENEYIFTEQN 130
>gi|443898632|dbj|GAC75966.1| transcription initiation factor IIF, small subunit [Pseudozyma
antarctica T-34]
Length = 401
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 144 RQIQVIDN-DHGVHMRPMPGM-VGLISS----NSKDKKKAQPVKQTEVKRTRRDRGELED 197
R I+++D+ D G H + G+ GL S N+ K + K R + EL D
Sbjct: 241 RTIKMLDSADAGRHNMLVAGVGAGLHSQKSRFNAAIATKPKATGAGTEKFARMPKNELLD 300
Query: 198 IMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
++F LFER W+LK+L ET QP + L + ++ R
Sbjct: 301 LLFALFERWQYWSLKKLRTETQQPESYLRETLTGIADLHKR 341
>gi|396080925|gb|AFN82545.1| transcription initiation factor TFIIF subunit beta [Encephalitozoon
romaleae SJ-2008]
Length = 228
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVS 74
L+ + +WL K PL +A+ + S++ + V + D + T AV
Sbjct: 3 LNINNKNTKIWLAKVPLFLAE----RILSRNEETVVG--------ELDITKATPTEPAVL 50
Query: 75 NDSLNR-------PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEE 127
N L++ P S+ + + M V ++++ +EG + ++ + P E N EE
Sbjct: 51 NLKLSKEFCEGGFPSSFDVKIKARDNNMYVV-KAHENNADVEGMINNECYITP-EIN-EE 107
Query: 128 YGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKR 187
Y + ++ KS K +QVID G + + ++ +KK K KR
Sbjct: 108 YLKYKKDAGFKSSAKKGDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KR 163
Query: 188 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
R + E+ D++FK FE+ P+W +K L QP +
Sbjct: 164 ERLGKNEVIDMVFKAFEKYPSWTVKDLADFCGQPVAFI 201
>gi|50287833|ref|XP_446346.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525653|emb|CAG59270.1| unnamed protein product [Candida glabrata]
Length = 395
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRPMP 161
K ++ G V H+ + P N Y ++ +R N ++KN +I +D GV M
Sbjct: 205 KTSIVGTVCHECQVMPS-MNDPNYHKIVEQRRN--IVKNSNKEKIVTLDETVGVTM-SHT 260
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + S NS K + + +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 261 GM-SMRSDNSNFLKVGREKAKNNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 319
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +K+ R VWL++ P+ +A+ W+++ ++ Q + K+ + D + +
Sbjct: 52 DLDLSKSKRQVWLVRLPMFLAERWRDR-NNLHGQQLGKI-----KINQDGSKIKLMLDEN 105
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
ND++ P Y L + K V VF+E N
Sbjct: 106 DNDAI--PHEYDLELTKKIVENEYVFTEQN 133
>gi|378755987|gb|EHY66012.1| hypothetical protein NERG_00708 [Nematocida sp. 1 ERTm2]
Length = 220
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 79 NRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNK 138
N P+ + + ++ + F + G ++G + + KP K EY + RER
Sbjct: 53 NFPREWIIEPLENKTGIFTFVQKPHGAF-IDGVITDEVYAKP--KITPEYLKYKRERNAA 109
Query: 139 SMIKNRQIQVIDN-DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELED 197
IK ++ +D+ G+ M G + +K+ + + E KR R + E+ D
Sbjct: 110 QNIKA-DVKAVDSLKEGIRME----RYGATEYDLMARKRKKML--MEKKRERLSKTEVMD 162
Query: 198 IMFKLFERQPNWALKQLVQETDQPAVWF 225
I+F+ FE P W++K L + QP +
Sbjct: 163 ILFRAFEEYPYWSVKDLADRSGQPLAYI 190
>gi|403168797|ref|XP_003328399.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167664|gb|EFP83980.2| hypothetical protein PGTG_09693 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 357
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 27/174 (15%)
Query: 57 DPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKF 116
+P+ S S E+T S D RP+ P G +A E +V
Sbjct: 118 EPVASTSKPEPTEST--STDKFGRPRRVR--------PKVARRPKLSGTIAHECQVAPVL 167
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
D + Y + R R K+ R I+ ++ D G R M ++++++ K
Sbjct: 168 D--------DNYRAVMRARQQKAAQPKRTIKRVNQDLGTLNR----MASGVTTHAQASKF 215
Query: 177 AQPVK-----QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
A + Q K TR R EL D +F F R WA K L +T QP +
Sbjct: 216 AAFTRSVTKPQGTEKFTRMPRTELMDTLFANFLRYDYWATKSLRAQTKQPEAYL 269
>gi|410897211|ref|XP_003962092.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 252
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
NL AK ++ VWL+K P +++ W+ + + ++ P S + + +
Sbjct: 8 NLTGAKENKCVWLVKVPRYLSQQWERASDKGEVGTISIAKKQGKPEVSFRLSEDLTSLGA 67
Query: 74 SND---SLNRPKSYSLNMF----KDFVPMSVFSESNQG-KVAMEGKVEHKFDMKPHEKNM 125
+ + S P+ + M + + S S N +++EG V H+ + P +
Sbjct: 68 AGEKDASPQVPRDHPFGMHAVGGQTLLTYSQSSTENSSDALSLEGTVVHRAECTPVVND- 126
Query: 126 EEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEV 185
Y +L + + + R Q ++ +P+ I K K++E
Sbjct: 127 -NYMKLKKMQIKECTKCPRLSQQLERAITTVFKPVANHDFNIVYEKK--------KKSEG 177
Query: 186 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K R +R + D++F FE+ + +K+LV T QP +
Sbjct: 178 KMVRAERQVVLDMLFSAFEKHQYYNIKELVDITKQPVTYL 217
>gi|401825424|ref|XP_003886807.1| transcription initiation factor IIF small subunit [Encephalitozoon
hellem ATCC 50504]
gi|392997963|gb|AFM97826.1| transcription initiation factor IIF small subunit [Encephalitozoon
hellem ATCC 50504]
Length = 228
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 24 VWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNR--- 80
+WL K PL +A+ + SQ+ + V + + + T AV N L++
Sbjct: 12 IWLAKVPLFLAE----RILSQNGETVVG--------ELEITKATPTEPAVLNLKLSKEFC 59
Query: 81 ----PKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERT 136
P S+ + + M V +++ +EG + ++ + P E N EEY + ++
Sbjct: 60 EGGFPSSFEVKIKARDNNMYVVR-AHENSADVEGMINNECYITP-EIN-EEYLKYKKDAG 116
Query: 137 NKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELE 196
KS K +QVID G + + ++ +KK K KR R + E+
Sbjct: 117 FKSDTKKGDVQVIDYLKEGKRGEKFGSLRELEYLARKRKKMLMDK----KRERLGKNEVI 172
Query: 197 DIMFKLFERQPNWALKQLVQETDQPAVWF 225
D++FK FE+ P+W +K L QP +
Sbjct: 173 DMVFKAFEKYPSWTVKDLADFCGQPVAFI 201
>gi|406866036|gb|EKD19076.1| transcription initiation factor IIF [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 367
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 90 KDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVI 149
K F P F ++ K + G++ H+ + + +E R+ ERT ++M + I
Sbjct: 165 KRFQPY--FRKAIPKKTTLAGRIGHEVNCVAVDN--QESQRILAERTLEAMRPKLHTKYI 220
Query: 150 DNDHGVHMRPM-PGMVGL---ISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFER 205
++ + + + PG +G +S K K A + K R + EL D +F+ F R
Sbjct: 221 KDEETLGVTFIQPGTMGAQKSFNSFIKTKNPATKERPQMTKTARMPQNELLDRIFECFRR 280
Query: 206 QPNWALKQLVQETDQPAVWF 225
W+LK L E QP V+
Sbjct: 281 YNYWSLKALRNELKQPEVYL 300
>gi|11514676|pdb|1F3U|A Chain A, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514678|pdb|1F3U|C Chain C, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514680|pdb|1F3U|E Chain E, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
gi|11514682|pdb|1F3U|G Chain G, Crystal Structure Of The Rap3074 INTERACTION DOMAINS OF
Human Tfiif
Length = 118
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 4 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 59
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKP 120
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 60 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRP 117
>gi|365991739|ref|XP_003672698.1| hypothetical protein NDAI_0K02640 [Naumovozyma dairenensis CBS 421]
gi|343771474|emb|CCD27455.1| hypothetical protein NDAI_0K02640 [Naumovozyma dairenensis CBS 421]
Length = 418
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R VWL++ P+ +A++W+++ ++ Q + K+ ++ D + +
Sbjct: 63 DLDLSRSNRQVWLVRLPMFLAETWRDR-NNLHGQELGKIRIN-----KDGSKIKLILNEN 116
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
ND++ P Y L + K V VF+E N
Sbjct: 117 ENDTI--PHEYDLELTKKIVENEYVFTEQN 144
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N N++ I + GV M GM
Sbjct: 216 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKTNNKERITTLAETVGVTM-SHTGM 273
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 274 -SMRSDTSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 330
>gi|254585803|ref|XP_002498469.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
gi|238941363|emb|CAR29536.1| ZYRO0G11022p [Zygosaccharomyces rouxii]
Length = 388
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ + Q + K+ ++ D +Q ++
Sbjct: 47 DLDLNQSNRQVWLVRLPMFLAEKWRDRNNIH-GQQLGKIRINKD---GSKIQLVLDEN-- 100
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 101 DNDSI--PHQYDLELTKKVVENEFVFTEQN 128
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKN---RQIQVIDNDHGVHMRPMP 161
K ++ G V H+ + P N Y ++ +R N +IKN +I +D GV M
Sbjct: 200 KTSITGTVCHECQVMPS-MNDPNYHKIVEQRRN--LIKNNNKERITTLDETVGVTM-SHT 255
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
GM + NS K + ++ K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 256 GM-SMRGDNSNFLKVGREKAKSNTKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 314
Query: 222 AV 223
Sbjct: 315 EA 316
>gi|351715101|gb|EHB18020.1| General transcription factor IIF subunit 2 [Heterocephalus glaber]
Length = 271
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 64 MQFTM-ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQ--GKVAMEGKVE 113
+ FT+ E A +D +P S S FV ++VF+ES+ ++ EG V
Sbjct: 74 VSFTLNEDLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSVVQRLNAEGIVV 133
Query: 114 HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKD 173
+ + +P E Y RL R + +S R Q +D + +P+ I K
Sbjct: 134 QRAECRP--AASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKK 191
Query: 174 KKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
K+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 192 KEDG--------KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 235
>gi|327283876|ref|XP_003226666.1| PREDICTED: general transcription factor IIF subunit 2-like [Anolis
carolinensis]
Length = 228
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 45/237 (18%)
Query: 12 KGNLD--TAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM- 68
KG LD AK + +WL+K S +NQ ++ S FT+
Sbjct: 4 KGELDLTGAKQNTGMWLVKV------SGRNQGRTEVS-------------------FTLN 38
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPH 121
E A +D +P S S F+ ++VF+ES K+++EG V + + +P
Sbjct: 39 EDLANIDDIGGKPTSISAPREHPFLLQSVGGQTLTVFTESALEKLSLEGIVVQRAECRPA 98
Query: 122 EKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVK 181
E Y +L R + +S ++ + +P+ +N + + + K
Sbjct: 99 AS--ENYMKLKRLQIEESSKPVSWTMQLEKAVTTNYKPV--------ANHQYNIEYEKKK 148
Query: 182 QTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
+ + KR R ++ ++ D++F FE+ + +K LV T QP + L + N++
Sbjct: 149 KEDGKRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILREIGIYNVK 205
>gi|410080956|ref|XP_003958058.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS 2517]
gi|372464645|emb|CCF58923.1| hypothetical protein KAFR_0F03270 [Kazachstania africana CBS 2517]
Length = 389
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD ++++R +WL++ P+ +A+ W+++ + Q + K+ ++ D + +
Sbjct: 38 DLDLSRSNRQIWLVRLPMFLAEKWRDRNNLH-GQELGKIRIN-----KDGSKIKLVLNEN 91
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 92 DNDSI--PHEYDLELTKKVVENEYVFTEQN 119
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K + G V H+ + P N Y ++ +R N N++ I +D GV M GM
Sbjct: 191 KTTITGTVCHECQVMPS-MNDPNYHKIVEQRRNLVKYNNKERITTLDQTVGVTM-SHTGM 248
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S S K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 249 -SMKSDTSTFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 305
>gi|403215585|emb|CCK70084.1| hypothetical protein KNAG_0D03370 [Kazachstania naganishii CBS
8797]
Length = 382
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K ++ G V H+ + P N Y ++ R N N++ I +D GV M GM
Sbjct: 188 KTSISGTVCHECQVMP-SMNDPNYHKIVEARRNIVKHNNKERITTLDGTVGVTM-SHTGM 245
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S +SK K + + K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 246 -SMKSDSSKFLKVGREKTKNNTKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTKQP 302
>gi|410927374|ref|XP_003977124.1| PREDICTED: general transcription factor IIF subunit 2-like
[Takifugu rubripes]
Length = 206
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 95 MSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQV---IDN 151
+ VFSE N + GKV + D P +EY RL R KS K + +Q+ I N
Sbjct: 59 LGVFSE-NSDDIDYLGKVLVRADCTP--AYFDEYLRLKRLEKKKSPQKAKMLQIQSPIAN 115
Query: 152 DHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWAL 211
V P + +DK+K + T D+ + D++F FE+ +
Sbjct: 116 YKPVSKHPY---------HREDKRKVG------AQYTSMDKKLVMDLLFSAFEKHQYCNI 160
Query: 212 KQLVQETDQPAVWF 225
KQLV T QP V+
Sbjct: 161 KQLVDMTKQPVVYL 174
>gi|261197806|ref|XP_002625305.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239595268|gb|EEQ77849.1| transcription initiation factor iif [Ajellomyces dermatitidis
SLH14081]
gi|239607691|gb|EEQ84678.1| transcription initiation factor iif [Ajellomyces dermatitidis ER-3]
gi|327355621|gb|EGE84478.1| transcription initiation factor iif [Ajellomyces dermatitidis ATCC
18188]
Length = 387
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
+ A+ G V +F+ P E EEY R+ R + R+ I G ++P +
Sbjct: 190 QTAIVGSVRDEFNCLPVEN--EEYQRMAEARALDVLKPKRETIYIGKVSGEMLKPK-TVA 246
Query: 165 GLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVW 224
S K + E K R + EL D+++ F R W K L E QP +
Sbjct: 247 AADKSTFIQVAKPPKARAQENKTARMPQNELLDLIYGCFRRHKYWPFKSLKAELRQPEAY 306
Query: 225 FLIFLIPLHHI 235
L + H+
Sbjct: 307 LKQTLEMVAHL 317
>gi|387594063|gb|EIJ89087.1| hypothetical protein NEQG_00906 [Nematocida parisii ERTm3]
gi|387595736|gb|EIJ93359.1| hypothetical protein NEPG_01701 [Nematocida parisii ERTm1]
Length = 219
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 184 EVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
E KR R + E+ DI+F+ FE P W++K L + QP +
Sbjct: 149 EKKRERLSKTEVMDIIFRAFEEYPYWSVKDLADRSGQPLAYI 190
>gi|339236175|ref|XP_003379642.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
gi|316977683|gb|EFV60754.1| general transcription factor IIF subunit 2 [Trichinella spiralis]
Length = 192
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 177 AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
A+P K+ E K R R EL D +F FE+ P++ L LV+ T QP
Sbjct: 105 AEPSKKAE-KSVRLSREELRDALFLAFEKNPHYKLVDLVRMTQQP 148
>gi|320582620|gb|EFW96837.1| transcription initiation factor TFIIF middle subunit [Ogataea
parapolymorpha DL-1]
Length = 406
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 80 RPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRE-RTNK 138
R + Y F++ + F+++ K A+ GK+ H+ + P + + +L + R
Sbjct: 190 RGRGYEEENFEEPKKVVPFAKTIPKKTALVGKIVHECQVIPTKLSTNNKLKLLEQKRRLA 249
Query: 139 SMIKNRQIQVI-DNDHGV-HMRPMPGM-VGLISSNSKDKKKAQPVKQTEVKRTRRDRGEL 195
M K + I + D + GV R P + G S++ + ++ E + +R DR L
Sbjct: 250 QMTKRKTITYMKDANAGVLQGRTGPNLQTGSTIQLSRELAARKEQQRLEGRASRMDREHL 309
Query: 196 EDIMFKLFERQPNWALKQLVQETDQPAVWF 225
++F LF W LK + ++T+QP +
Sbjct: 310 MKVLFNLFNEYDYWTLKGIREKTNQPEAYL 339
>gi|406601241|emb|CCH47093.1| Transcription initiation factor IIF subunit beta [Wickerhamomyces
ciferrii]
Length = 424
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNR---QIQVIDNDHGVHMRPMP 161
K ++ GK+ H+ + P N Y ++ + R K++IK + +++ GV +
Sbjct: 241 KTSLIGKIAHECQITPM-VNDPNYSKIIQRR--KNLIKEEPRPTVTLLNEIPGVTLSNA- 296
Query: 162 GMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
G+ ++ K A + E + R + +L D++FKLF+ W+LK L + T QP
Sbjct: 297 GLTLKTDTSKFLKSSASTKNKNEGRAIRMPQKDLFDLLFKLFDEYDYWSLKGLKERTKQP 356
Query: 222 AVWF 225
V+
Sbjct: 357 EVYL 360
>gi|324518109|gb|ADY47006.1| General transcription factor IIF subunit 2 [Ascaris suum]
Length = 297
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 82 KSYSLNMF-KDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSM 140
KS SLN+ +D ++ +E G++A EG+V + D +P + +Y + + KS
Sbjct: 126 KSQSLNVLSEDKTGLNEDAEICSGRLAFEGRVIKRADCRPPQ--TVDYLHMKINQIEKSS 183
Query: 141 IKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMF 200
I RQ++ ID V +P+ ++ + K+ A+ V R D+ + +F
Sbjct: 184 IPKRQLKQIDKAE-VKFKPVAIHTETLARERQKKEGAKTV--------RGDKDVVRQAIF 234
Query: 201 KLFERQPNWALKQLVQETDQP 221
FE+ + L L + T+QP
Sbjct: 235 HAFEKHQYYRLIDLQKLTNQP 255
>gi|320167105|gb|EFW44004.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 332
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 23/228 (10%)
Query: 15 LDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDS---MQFTMETT 71
++ ++ R VWL+K P A + ++ + + P + + + +E
Sbjct: 104 VEPSRLGRQVWLVKVPEYFANALEHLEDQTHFATLQMPTSAPAPSRFGAPREIGIDIELD 163
Query: 72 AVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKP-HEKNMEEYGR 130
+ L P Y + + + + + FSE G +A EG K D+ P Y
Sbjct: 164 LTDQNDLLLPHQYRMQILPNTLGAAAFSEDESGNLAFEGTAVQKCDVMPVLNDEYRAYLS 223
Query: 131 LCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRTRR 190
RE K + +Q+ V V + K ++K + V KR R
Sbjct: 224 AKRELEAKPKFETQQVAV---------------VKALYEPEKQREKRRDVD----KRERI 264
Query: 191 DRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINLR 238
D+ +L+D + +FER +L+QL Q T+QP + L L N R
Sbjct: 265 DKEQLKDQITAVFERYQFASLQQLQQLTNQPPNYLKQVLSELCDYNTR 312
>gi|367005961|ref|XP_003687712.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
gi|357526017|emb|CCE65278.1| hypothetical protein TPHA_0K01450 [Tetrapisispora phaffii CBS 4417]
Length = 403
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K ++ G V H+ + P N Y ++ +R N N++ I +D GV M GM
Sbjct: 209 KTSITGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKRNNKETITTLDETVGVTM-SHTGM 266
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S +S K + + VK R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 267 -SMKSDSSNFLKVGREKAKQNVKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 323
>gi|308471818|ref|XP_003098139.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
gi|308269480|gb|EFP13433.1| hypothetical protein CRE_11367 [Caenorhabditis remanei]
Length = 268
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQN---------QASSQDSQPVAKVILSLDPLQSDSM 64
++D A RS+WL+K P +++ W+ Q +Q AK ++ P + +
Sbjct: 12 DVDCELAKRSIWLVKVPRYLSELWEANEGHVVGKLQIGAQVEFLTAKGLIQPTP-KDEGE 70
Query: 65 QFTMETTAVSNDSLNRPKSYSLNMFKDFV--PMSVFSESNQ----------GKVAMEGKV 112
+ +A + ++ P YS + D MSV SE Q G++A+EG++
Sbjct: 71 GTSAAASATNAEASEIPTQYSF-ILHDVKSQTMSVLSEDKQALGSEATVKTGRLAIEGRI 129
Query: 113 EHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSK 172
K + +P + +Y ++ K+ + +++ID V +P +S +++
Sbjct: 130 IKKAECRPPATS--KYMKMKLAHIVKNTQPKKTVKMIDKA-AVKFKP-------VSVHAE 179
Query: 173 DKKKAQPVKQTEVKRTRRDRGELEDIMFKLFER 205
D K++ K+ K R DR L +FK FE+
Sbjct: 180 DMIKSKQ-KKDGAKTYRADRDVLRQALFKAFEK 211
>gi|390337008|ref|XP_784682.2| PREDICTED: general transcription factor IIF subunit 2-like
[Strongylocentrotus purpuratus]
Length = 199
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 10 NGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSL---DPLQSDSMQF 66
K LD + R +WL+K P VA+ W+ S + + K+ + P S M
Sbjct: 2 TSKMELDLTASARPIWLVKVPKYVAQRWEK---SDKNGHIGKIRVGKKFGKPDISLVMDE 58
Query: 67 TMETTAVSNDSLNRPKSYSLNMFKDFV-PMSVFSESNQGKVAMEGKVEHKFDMKP 120
+ T ++ D + P + L + M V+S K+++EGKV + + +P
Sbjct: 59 RVAKTKLTPDDPDIPVEHKLQVMSALPGTMMVYSTGTTDKLSVEGKVVERLECRP 113
>gi|384498375|gb|EIE88866.1| phenylalanyl-tRNA synthetase, beta subunit [Rhizopus delemar RA
99-880]
Length = 598
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 42 SSQDSQPVAKVILSLDPLQSDSMQFT--METTAVSNDSLNRPKSY-SLNMFKDFVPMSVF 98
+S D + +V++++ P + D + ME A+S N PK ++N F +P++
Sbjct: 332 ASIDPKDKNQVLVNVPPTRWDILHACDIMEDVAISYGYDNLPKKMPNVNTFGAPLPLNKL 391
Query: 99 SESNQGKVAMEGKVE-HKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHM 157
S+ + ++AM G E + H++N + L +E NKS IK + + V
Sbjct: 392 SDHIRKELAMAGFTEVAPLILCSHDEN---FKFLNKEDDNKSAIKLANPKTAEY-QVVRT 447
Query: 158 RPMPGMVGLISSNSKDKKKAQPVKQTEVK--------RTRRDRGE 194
+PG++ ++SN KK A P+K EV R RR R E
Sbjct: 448 SLLPGILKTLNSN---KKLAMPIKVFEVSDVGFKDETRERRARNE 489
>gi|342879567|gb|EGU80812.1| hypothetical protein FOXB_08679 [Fusarium oxysporum Fo5176]
Length = 369
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ + ++PH K+ EE R+ +++ + ++Q+I H PG
Sbjct: 190 KTKIFGKIHYDVRVEPHGKDEEE--RVLQQKILDAEANKSKVQIISR-HAASAVVNPGTT 246
Query: 165 GLISSNSKDKKK----AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
K A+P K K R +L D++F+ F + W++K L Q+ Q
Sbjct: 247 RAAEFGDSFIKNIAATAKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSVKALRQKLQQ 306
Query: 221 PAVWF 225
P +
Sbjct: 307 PEQYL 311
>gi|322708595|gb|EFZ00172.1| transcription initiation factor iif [Metarhizium anisopliae ARSEF
23]
Length = 376
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMV 164
K + GK+ +D++ +N+ E RL +R + ++Q+I + + PG
Sbjct: 196 KTKIFGKIH--YDVRVEPRNIREEERLLAQRLLDAESSKTKLQIISRNSASAI-INPGTA 252
Query: 165 GLISSNSKDKKKAQP---VKQTEV-KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ 220
G + K A P K+ EV K R + +L D++F F + W++K L Q+ Q
Sbjct: 253 GSATWGGGFIKNAPPTVKAKKGEVFKAARIPKNQLLDLIFDCFRQYQYWSMKALRQKLQQ 312
Query: 221 P 221
P
Sbjct: 313 P 313
>gi|46108468|ref|XP_381292.1| hypothetical protein FG01116.1 [Gibberella zeae PH-1]
Length = 363
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 110 GKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISS 169
GKV + ++P + EE RL +++ ++ ++Q+I + PG G +S
Sbjct: 189 GKVHYDVRVEPRDIREEE--RLLQQKLLEADGNKSKLQIISQSAASSIV-APGSAGAVSW 245
Query: 170 NSKDKKK----AQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
K A+P K K R +L D++F+ F + W++K L Q+ QP
Sbjct: 246 GGSFIKNTASTAKPKKGEVFKAARIPENQLLDLIFECFRQYQYWSMKALRQKLQQP 301
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,105,898
Number of Sequences: 23463169
Number of extensions: 134648964
Number of successful extensions: 341242
Number of sequences better than 100.0: 323
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 340717
Number of HSP's gapped (non-prelim): 409
length of query: 242
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 104
effective length of database: 9,121,278,045
effective search space: 948612916680
effective search space used: 948612916680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)