BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026167
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfg2 PE=1 SV=1
Length = 307
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 21/243 (8%)
Query: 2 EDDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQS 61
EDD+ + + G+LD + VWL+K P + W N D+ + V +++
Sbjct: 12 EDDR--YEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKN 63
Query: 62 DSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKF 116
D +Q ++ + + D PK Y+L + FV S VF ES A+ G V H+
Sbjct: 64 DEIQLLLQNSPENADV---PKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHEC 120
Query: 117 DMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS-SNSKDKK 175
++ P ++Y R+ ++R + R++Q+ID+ G + PG +G S S + +
Sbjct: 121 NVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLL--APGTLGSRSRSTTSFIR 176
Query: 176 KAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHI 235
+P +K +R R EL DI+FK FE W LK L + QP V+ L + +
Sbjct: 177 NVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAIL 236
Query: 236 NLR 238
N R
Sbjct: 237 NKR 239
>sp|P13984|T2FB_HUMAN General transcription factor IIF subunit 2 OS=Homo sapiens
GN=GTF2F2 PE=1 SV=2
Length = 249
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKTQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP V+
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYL 213
>sp|P41900|T2FB_DROME General transcription factor IIF subunit 2 OS=Drosophila
melanogaster GN=TfIIFbeta PE=2 SV=2
Length = 277
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 28/241 (11%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQD----------------SQPVAKVILSLD 57
+LD + A R VWL+K P +A+ W+ ++ D S + +L+LD
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74
Query: 58 PLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFD 117
P + + ++ + V+ +L + + K+ S N+ K+ MEG++ K +
Sbjct: 75 PEEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNE-KLYMEGRIVQKLE 133
Query: 118 MKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKA 177
+P N Y +L E K+ R++Q ID + +P+ I +++KKA
Sbjct: 134 CRPIADNC--YMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEY--RERKKA 188
Query: 178 QPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIFLIPLHHINL 237
E K+ R D+ + D++F FE+ + +K LV+ T+QP + L + N+
Sbjct: 189 ------EGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNM 242
Query: 238 R 238
+
Sbjct: 243 K 243
>sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2
PE=2 SV=1
Length = 249
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y RL R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 N--ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYL 213
>sp|Q8R0A0|T2FB_MOUSE General transcription factor IIF subunit 2 OS=Mus musculus
GN=Gtf2f2 PE=1 SV=1
Length = 249
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKASGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q +D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>sp|Q01750|T2FB_RAT General transcription factor IIF subunit 2 OS=Rattus norvegicus
GN=Gtf2f2 PE=2 SV=1
Length = 249
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 22/223 (9%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L AK + VWL+K P +++ W A + V K+ ++ + +++ + FT+ E
Sbjct: 5 GELDLTGAKQNTGVWLVKVPKYLSQQW---AKAPGRGEVGKLRIAKNQGRTE-VSFTLNE 60
Query: 70 TTAVSNDSLNRPKSYSLNMFKDFV-------PMSVFSESNQGKVAMEGKVEHKFDMKPHE 122
A +D +P S S FV ++VF+ES+ K+++EG V + + +P
Sbjct: 61 DLANIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAA 120
Query: 123 KNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQ 182
E Y +L R + +S R Q D + +P+ +N + + + K+
Sbjct: 121 S--ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPV--------ANHQYNIEYERKKK 170
Query: 183 TEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWF 225
+ KR R D+ + D++F FE+ + LK LV T QP +
Sbjct: 171 EDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYL 213
>sp|Q54KT7|T2FB_DICDI General transcription factor IIF subunit 2 OS=Dictyostelium
discoideum GN=gtf2f2 PE=3 SV=2
Length = 241
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 13 GNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAK----VILSLDPLQSDSMQFTM 68
G ++T AD VWL+K P +++SWQ + Q K + LS P +F +
Sbjct: 11 GEVNTDNADNQVWLIKVPKFLSESWQKIGQGEIGQIHIKGGDNISLSYGP--DVGQEFQL 68
Query: 69 ETTAVSNDSLNRPKSYSLNMFKDFVPMSVFSESNQGKVAMEGKVEHKFDMKPHEKNMEEY 128
TTA + D+ P+ +FSE G +A+EG + + D+K ++ +Y
Sbjct: 69 ITTANTLDN---------------QPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQY 112
Query: 129 GRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDKKKAQPVKQTEVKRT 188
L + R K K R QVID P L +N K K V T+ K++
Sbjct: 113 RDLMKSRHTKYNTKTRMTQVIDESE--LFTPT-----LFDAN---KVKVSTVGITQKKKS 162
Query: 189 RRD-----RGELEDIMFKLFERQPNWALKQLVQETDQP 221
E+ D++F F + + LK L T+QP
Sbjct: 163 TDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQP 200
>sp|Q03123|T2FB_XENLA General transcription factor IIF subunit 2 OS=Xenopus laevis
GN=gtf2f2 PE=2 SV=1
Length = 264
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 36/250 (14%)
Query: 11 GKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTM-E 69
G+ +L+ AK + +WL+K P +A+ W A + V K+ + + +++ + FT+ E
Sbjct: 6 GELDLNGAKQNTGMWLVKLPKYLAQQW---AKATGRGEVGKLRIVKNQGKTE-VSFTLNE 61
Query: 70 TTAVSNDSLNRPKSYSLNMFKD--FV-------PMSVFSESNQG------------KVAM 108
A D +P S ++ ++ F+ ++V +ES G K+A+
Sbjct: 62 ELASIQDIGGKPASSLVSTPREHPFLLQSVGGQTLTVLTESLSGQSEDKSENRVIDKLAL 121
Query: 109 EGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLIS 168
EG V H+ + +P + Y ++ R++ +S RQ Q ++ + +P+
Sbjct: 122 EGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPV-------- 171
Query: 169 SNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVWFLIF 228
SN + + + K+ + KR R D+ ++ D++F FE+ + +K LV T QP +
Sbjct: 172 SNHQYNIEYEKKKKDDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTYLKEI 231
Query: 229 LIPLHHINLR 238
L + N++
Sbjct: 232 LRDIGIYNMK 241
>sp|P41896|T2FB_YEAST Transcription initiation factor IIF subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFG2 PE=1
SV=2
Length = 400
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 105 KVAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQ-IQVIDNDHGVHMRPMPGM 163
K A+ G V H+ + P N Y ++ +R N + N++ I +D GV M GM
Sbjct: 211 KTAIVGTVCHECQVMPS-MNDPNYHKIVEQRRNIVKLNNKERITTLDETVGVTM-SHTGM 268
Query: 164 VGLISSNSKDKKKAQPVKQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP 221
+ S NS K + ++ +K R + E+ D +FKLF+ W+LK L + T QP
Sbjct: 269 -SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGLKERTRQP 325
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 14 NLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAV 73
+LD +++R VWL++ P+ +A+ W+++ ++ Q + K+ ++ D + T+
Sbjct: 58 DLDLERSNRQVWLVRLPMFLAEKWRDR-NNLHGQELGKIRIN-----KDGSKITLLLNEN 111
Query: 74 SNDSLNRPKSYSLNMFKDFVPMS-VFSESN 102
NDS+ P Y L + K V VF+E N
Sbjct: 112 DNDSI--PHEYDLELTKKVVENEYVFTEQN 139
>sp|O67907|KCY_AQUAE Cytidylate kinase OS=Aquifex aeolicus (strain VF5) GN=cmk PE=3 SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 93 VPMSVFSESNQGKVAMEGKVEHKFDMKPHE--KNMEEYGRL--CRERTNK---SMIKNRQ 145
+P+ V + + +V +EGK ++ D++ E K E G + RER NK +I N+Q
Sbjct: 58 LPVKVVPKIGKTEVYIEGKPVNEEDLRSEEVGKRASELGSIPEFRERINKLFKEIINNKQ 117
Query: 146 IQVIDNDHGVHMRPMPGMVGLISSNSKDKKK 176
+ V D G H+ P + I+++ +++ K
Sbjct: 118 MVVEGRDAGTHIIPEAPVKVFITASPEERAK 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,138,765
Number of Sequences: 539616
Number of extensions: 3263462
Number of successful extensions: 9074
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9044
Number of HSP's gapped (non-prelim): 28
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)