BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026168
MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK
DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI
AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN
GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT
SL

High Scoring Gene Products

Symbol, full name Information P value
RECQI1
RECQ helicase l1 		protein from Arabidopsis thaliana 1.1e-96
SGS1
Nucleolar DNA helicase of the RecQ family 		gene from Saccharomyces cerevisiae 7.4e-51
RECQ4A protein from Arabidopsis thaliana 1.3e-50
SGS1 gene_product from Candida albicans 1.2e-49
SGS1
Putative uncharacterized protein SGS1 		protein from Candida albicans SC5314 1.2e-49
him-6 gene from Caenorhabditis elegans 1.4e-49
blm
Bloom syndrome protein 		gene from Dictyostelium discoideum 3.6e-49
blm
Bloom syndrome protein homolog 		protein from Xenopus laevis 5.0e-48
Blm
Bloom syndrome helicase ortholog 		protein from Drosophila melanogaster 2.0e-47
blm
Bloom syndrome 		gene_product from Danio rerio 2.2e-46
RECQL2
RECQ helicase L2 		protein from Arabidopsis thaliana 1.4e-44
BLM
Uncharacterized protein 		protein from Canis lupus familiaris 1.4e-44
BLM
Uncharacterized protein 		protein from Canis lupus familiaris 1.4e-44
BLM
Bloom syndrome protein 		protein from Homo sapiens 1.9e-44
BLM
Bloom syndrome protein 		protein from Homo sapiens 2.3e-44
RECQL
Uncharacterized protein 		protein from Canis lupus familiaris 3.9e-44
RECQL
ATP-dependent DNA helicase Q1 		protein from Homo sapiens 3.9e-44
BLM
Uncharacterized protein 		protein from Bos taurus 4.8e-44
BLM
Bloom syndrome protein homolog 		protein from Gallus gallus 6.5e-44
K02F3.12 gene from Caenorhabditis elegans 8.1e-44
BLM
Bloom syndrome protein homolog 		protein from Gallus gallus 9.6e-44
Blm
Bloom syndrome, RecQ helicase-like 		protein from Mus musculus 1.0e-43
RecQl3
AT4G35740 		protein from Arabidopsis thaliana 1.3e-43
BLM
Bloom syndrome protein homolog 		protein from Gallus gallus 2.9e-43
Recql
RecQ protein-like (DNA helicase Q1-like) 		gene from Rattus norvegicus 5.7e-43
Recql
RecQ protein-like 		protein from Mus musculus 7.3e-43
RECQL
RecQ protein-like (DNA helicase Q1-like) 		protein from Bos taurus 1.0e-42
RECQL
Uncharacterized protein 		protein from Sus scrofa 1.8e-42
CBU_0472
ATP-dependent DNA helicase RecQ 		protein from Coxiella burnetii RSA 493 1.9e-42
DDB_G0272384
Bloom syndrome-like protein 		gene from Dictyostelium discoideum 7.8e-42
RECQL
Uncharacterized protein 		protein from Gallus gallus 4.3e-41
recql
RecQ protein-like (DNA helicase Q1-like) 		gene_product from Danio rerio 8.9e-41
VC_0196
ATP-dependent DNA helicase RecQ 		protein from Vibrio cholerae O1 biovar El Tor str. N16961 6.0e-39
VC_0196
ATP-dependent DNA helicase RecQ 		protein from Vibrio cholerae O1 biovar El Tor 6.0e-39
GSU_0898
ATP-dependent DNA helicase RecQ 		protein from Geobacter sulfurreducens PCA 1.2e-38
recQ gene from Escherichia coli K-12 2.1e-37
wrn-1 gene from Caenorhabditis elegans 3.3e-35
Blm
Bloom syndrome, RecQ helicase-like 		gene from Rattus norvegicus 4.9e-35
RECQL5
ATP-dependent DNA helicase Q5 		protein from Homo sapiens 2.8e-34
wrn
Werner syndrome protein 		gene from Dictyostelium discoideum 4.4e-34
WRN
Uncharacterized protein 		protein from Canis lupus familiaris 7.7e-34
wrn
Werner syndrome 		gene_product from Danio rerio 8.5e-34
RECQL5
Uncharacterized protein 		protein from Bos taurus 1.5e-33
WRN
Uncharacterized protein 		protein from Bos taurus 1.7e-33
WRN
Uncharacterized protein 		protein from Canis lupus familiaris 2.5e-33
WRN
Uncharacterized protein 		protein from Canis lupus familiaris 2.6e-33
RecQ5
homolog of RecQ 		protein from Drosophila melanogaster 2.8e-33
SO_4241
ATP-dependent DNA helicase RecQ 		protein from Shewanella oneidensis MR-1 3.1e-33
RECQL5
RecQ protein-like 5, isoform CRA_c 		protein from Homo sapiens 3.9e-33
RECQL5
ATP-dependent DNA helicase Q5 		protein from Homo sapiens 4.1e-33
wrn
Werner syndrome ATP-dependent helicase homolog 		protein from Xenopus laevis 4.8e-33
WRN
Uncharacterized protein 		protein from Sus scrofa 6.0e-33
WRN
Uncharacterized protein 		protein from Sus scrofa 6.6e-33
BLM
Uncharacterized protein 		protein from Sus scrofa 6.7e-33
recQ
Probable ATP-dependent DNA helicase RecQ 		protein from Bacillus subtilis subsp. subtilis str. 168 1.2e-32
RECQL5
Uncharacterized protein 		protein from Canis lupus familiaris 1.8e-32
BA_2818
ATP-dependent DNA helicase RecQ 		protein from Bacillus anthracis str. Ames 4.4e-32
F1NAR0
Uncharacterized protein 		protein from Gallus gallus 8.5e-32
F1NT69
Uncharacterized protein 		protein from Gallus gallus 1.3e-31
WRN
Werner syndrome ATP-dependent helicase 		protein from Homo sapiens 1.5e-31
Recql5
RecQ protein-like 5 		gene from Rattus norvegicus 4.3e-31
RECQL5
Uncharacterized protein 		protein from Sus scrofa 1.4e-30
F1NWK5
Uncharacterized protein 		protein from Gallus gallus 2.1e-30
Wrn
Werner syndrome homolog (human) 		protein from Mus musculus 5.7e-30
Wrn
Werner syndrome, RecQ helicase-like 		gene from Rattus norvegicus 9.8e-30
rcq-5 gene from Caenorhabditis elegans 2.5e-29
RECQSIM
RECQ helicase SIM 		protein from Arabidopsis thaliana 7.7e-29
BA_1505
ATP-dependent DNA helicase RecQ 		protein from Bacillus anthracis str. Ames 1.7e-26
CPS_4237
RecQ domain protein 		protein from Colwellia psychrerythraea 34H 6.2e-26
CPS_4237
RecQ domain protein 		protein from Colwellia psychrerythraea 34H 6.2e-26
SPO_0107
ATP-dependent DNA helicase RecQ 		protein from Ruegeria pomeroyi DSS-3 7.1e-25
SO_2380
ATP-dependent DNA helicase RecQ family 		protein from Shewanella oneidensis MR-1 1.2e-22
SO_2380
RecQ domain protein 		protein from Shewanella oneidensis MR-1 1.2e-22
H9KZS5
Uncharacterized protein 		protein from Gallus gallus 1.6e-21
AT1G27880 protein from Arabidopsis thaliana 9.3e-21
PF14_0278
ATP-dependent DNA helicase, putative 		gene from Plasmodium falciparum 6.1e-20
PF14_0278
ATP-dependent DNA helicase, putative 		protein from Plasmodium falciparum 3D7 6.1e-20
Recql4
RecQ protein-like 4 		gene from Rattus norvegicus 8.5e-18
RECQL4
RECQL4 protein 		protein from Bos taurus 1.1e-17
RECQL4
Uncharacterized protein 		protein from Sus scrofa 1.4e-17
RECQL4
Uncharacterized protein 		protein from Sus scrofa 1.4e-17
RECQL4
Uncharacterized protein 		protein from Sus scrofa 1.4e-17
RTS
RECQL4-helicase-like protein 		protein from Xenopus laevis 2.1e-17
recql4
RecQ4 protein 		protein from Xenopus laevis 2.1e-17
Recql4
RecQ protein-like 4 		protein from Mus musculus 2.9e-17
RecQ4 protein from Drosophila melanogaster 4.0e-17
RECQL4
ATP-dependent DNA helicase Q4 		protein from Homo sapiens 4.3e-16
DDX50
Uncharacterized protein 		protein from Gallus gallus 1.4e-12
RECQL5
ATP-dependent DNA helicase Q5 		protein from Homo sapiens 1.5e-12
DDX21
Nucleolar RNA helicase 2 		protein from Homo sapiens 8.1e-12
CPS_2945
Putative DEAD/DEAH box helicase 		protein from Colwellia psychrerythraea 34H 9.0e-12
CPS_2945
putative DEAD/DEAH box helicase 		protein from Colwellia psychrerythraea 34H 9.0e-12
ddx21
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 		gene_product from Danio rerio 1.3e-11
DDX21
Uncharacterized protein 		protein from Canis lupus familiaris 4.0e-11
DDX21
Uncharacterized protein 		protein from Canis lupus familiaris 4.0e-11
DDX21
Uncharacterized protein 		protein from Gallus gallus 2.5e-10

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026168
        (242 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe...   961  1.1e-96   1
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric...   551  7.1e-52   1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t...   541  7.4e-51   1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop...   537  1.3e-50   1
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica...   528  1.2e-49   1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ...   528  1.2e-49   1
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd...   525  1.4e-49   1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote...   524  3.6e-49   1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase...   519  1.4e-48   1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom...   514  5.0e-48   1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth...   509  2.0e-47   1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec...   499  2.2e-46   1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe...   472  1.4e-44   1
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s...   482  1.4e-44   1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s...   482  1.4e-44   1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp...   480  1.9e-44   1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp...   480  2.3e-44   1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"...   465  3.9e-44   1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica...   465  3.9e-44   1
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s...   477  4.8e-44   1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom...   474  6.5e-44   1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh...   462  8.1e-44   1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom...   474  9.6e-44   1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica...   474  1.0e-43   1
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37...   464  1.3e-43   1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom...   468  2.9e-43   1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica...   454  5.7e-43   1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica...   454  5.7e-43   1
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species...   453  7.3e-43   1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"...   452  1.0e-42   1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"...   450  1.8e-42   1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he...   449  1.9e-42   1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr...   391  7.8e-42   2
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"...   439  4.3e-41   1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik...   435  8.9e-41   1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli...   418  6.0e-39   1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli...   418  6.0e-39   1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he...   414  1.2e-38   1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia...   404  2.1e-37   1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd...   392  3.3e-35   1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l...   390  4.9e-35   1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic...   372  2.8e-34   1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot...   316  4.4e-34   2
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s...   381  7.7e-34   1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe...   236  8.5e-34   2
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein...   376  1.5e-33   1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s...   378  1.7e-33   1
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s...   377  2.5e-33   1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s...   377  2.6e-33   1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7...   374  2.8e-33   1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli...   367  3.1e-33   1
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic...   372  3.9e-33   1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic...   372  4.1e-33   1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend...   374  4.8e-33   1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s...   373  6.0e-33   1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s...   373  6.6e-33   1
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s...   359  6.7e-33   1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN...   361  1.2e-32   1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein...   366  1.8e-32   1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli...   359  4.4e-32   1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein...   362  8.5e-32   1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein...   347  1.3e-31   1
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend...   360  1.5e-31   1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species...   353  4.3e-31   1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein...   337  1.4e-30   1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein...   347  2.1e-30   1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum...   345  5.7e-30   1
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-...   343  9.8e-30   1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd...   335  2.5e-29   1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s...   268  7.7e-29   2
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli...   275  1.7e-26   2
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric...   204  2.8e-26   3
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ...   302  6.2e-26   1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"...   302  6.2e-26   1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he...   292  7.1e-25   1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli...   271  1.2e-22   1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s...   271  1.2e-22   1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein...   197  1.6e-21   2
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi...   256  9.3e-21   1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe...   251  6.1e-20   1
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he...   251  6.1e-20   1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species...   230  8.5e-18   1
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species...   229  1.1e-17   1
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein...   228  1.4e-17   1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein...   228  1.4e-17   1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein...   228  1.4e-17   1
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote...   195  2.1e-17   2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:...   195  2.1e-17   2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe...   225  2.9e-17   1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso...   225  4.0e-17   1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic...   214  4.3e-16   1
UNIPROTKB|E1BW15 - symbol:DDX50 "Uncharacterized protein"...   178  1.4e-12   1
UNIPROTKB|J3KRM6 - symbol:RECQL5 "ATP-dependent DNA helic...   167  1.5e-12   1
UNIPROTKB|Q9NR30 - symbol:DDX21 "Nucleolar RNA helicase 2...   176  8.1e-12   1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo...   176  9.0e-12   1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b...   176  9.0e-12   1
ZFIN|ZDB-GENE-031113-10 - symbol:ddx21 "DEAD (Asp-Glu-Ala...   175  1.3e-11   1
UNIPROTKB|E2QTL6 - symbol:DDX21 "Uncharacterized protein"...   173  4.0e-11   1
UNIPROTKB|F6V8G4 - symbol:DDX21 "Uncharacterized protein"...   173  4.0e-11   1
UNIPROTKB|E1C6M6 - symbol:DDX21 "Uncharacterized protein"...   162  2.5e-10   1

WARNING:  Descriptions of 68 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2074429 [details] [associations]
            symbol:RECQI1 "RECQ helicase l1" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0042631 "cellular response to water deprivation" evidence=IEP]
            [GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
            EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
            UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
            EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
            TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
            ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
        Length = 606

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 180/237 (75%), Positives = 207/237 (87%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATAT+SV  D+LK+LRIP A VL+ SFDR NLKYEVI K+KE LKQ+ +L++DRFK
Sbjct:   367 MALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFK 426

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             DQ GI+YCLSK+ECV+V+ FLN+KCK+KTVYYHAG+ A+QRV VQ+KW TG+V+IVCATI
Sbjct:   427 DQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATI 486

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDK DVRFVIHNTLSK++ESYYQESGRAGRD L + CI LYQKKDFSRVVCMLRN
Sbjct:   487 AFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRN 546

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             GQG   + FK+AMAQAKKMQQYCE K ECRRQ LLE+FGESFDR  CK+  NPCDNC
Sbjct:   547 GQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNC 603


>ASPGD|ASPL0000045206 [details] [associations]
            symbol:musN species:162425 "Emericella nidulans"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
            ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
            GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
            Uniprot:G5EB35
        Length = 1534

 Score = 551 (199.0 bits), Expect = 7.1e-52, P = 7.1e-52
 Identities = 110/239 (46%), Positives = 148/239 (61%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI--GKSKEALKQIGQLIKDR 58
             MALTATAT++V++D++  LR+    V   SF+RPNL YEV   GK  E L  I   IK  
Sbjct:   866 MALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAELLDSIADTIKST 925

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
             ++++CGI+YCLS+N C +V+  L     IK  +YHAGL A  R   Q++W  GDV ++ A
Sbjct:   926 YRNKCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVA 985

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH+++ KS+E YYQE+GRAGRD   S C + +  +D S +  M+
Sbjct:   986 TIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMI 1045

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
                +                + +YCE   +CRR  +L +F ESF R+ C N S  CDNC
Sbjct:  1046 EKNEDSDDVQKGRQTRMLNDVVKYCENANDCRRVQILAYFSESFKRQDC-NAS--CDNC 1101


>SGD|S000004802 [details] [associations]
            symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
            species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0000722 "telomere maintenance via
            recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
            formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
            DNA double-strand break processing" evidence=IGI] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0010520
            "regulation of reciprocal meiotic recombination" evidence=IGI]
            [GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IGI] [GO:0000729 "DNA double-strand break processing"
            evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
            [GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
            segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IDA] [GO:0051276 "chromosome organization"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
            GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
            GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
            GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
            EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
            OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
            RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
            SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
            STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
            GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
            OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
            Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
            InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
        Length = 1447

 Score = 541 (195.5 bits), Expect = 7.4e-51, P = 7.4e-51
 Identities = 105/238 (44%), Positives = 152/238 (63%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA++ VR+DI+  L +   + L+ SF+R NL YEV  K+K  + +I   +K RFK
Sbjct:   840 IALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFK 899

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             +Q GIIYC SK  C + S  + Q+  IK  YYHAG+   +R+ VQK W   ++Q++CAT+
Sbjct:   900 NQTGIIYCHSKKSCEQTSAQM-QRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATV 958

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKPDVRFV H T+ +++E YYQE+GRAGRD   S CI  +  +D   +  M++ 
Sbjct:   959 AFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQK 1018

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC-KNGSNPCDNC 237
              +    E  +  + + +++  YC+   +CRR+ +L +F E FD K C KN    CDNC
Sbjct:  1019 DKNLDRENKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSKLCHKN----CDNC 1072


>TAIR|locus:2197394 [details] [associations]
            symbol:RECQ4A species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
            recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
            response to cold" evidence=IEP] [GO:0071215 "cellular response to
            abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
            via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
            "response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
            "chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
            EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
            RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
            SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
            EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
            TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
            PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
            Uniprot:Q8L840
        Length = 1188

 Score = 537 (194.1 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 112/250 (44%), Positives = 153/250 (61%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATAT SV+ D+++AL + + +V   SF+RPNL Y V+ K+K+ L+ I + IK+   
Sbjct:   613 LALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHF 672

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D+CGIIYCLS+ +C +VS  L Q+   K  +YH  +   QR  +Q +W   ++ I+CAT+
Sbjct:   673 DECGIIYCLSRMDCEKVSERL-QEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATV 731

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGI+KPDVRFVIH++L KSIE Y+QE GRAGRD   S C++ Y   D+ RV  M+  
Sbjct:   732 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQ 791

Query:   181 G--------QGFKSEA-----FKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC 227
             G         G+   A      +T      +M +YCE + ECRR   L H GE FD   C
Sbjct:   792 GGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEKFDSTNC 851

Query:   228 KNGSNPCDNC 237
             K     CDNC
Sbjct:   852 KK---TCDNC 858


>CGD|CAL0004296 [details] [associations]
            symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0001302
            "replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
            "filamentous growth of a population of unicellular organisms"
            evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
            evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
            processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
            replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
            segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
            checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
            mating-type locus, DNA double-strand break processing"
            evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
            evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
            molecule formation" evidence=IEA] [GO:0000724 "double-strand break
            repair via homologous recombination" evidence=IEA] [GO:0045132
            "meiotic chromosome segregation" evidence=IEA] [GO:0030447
            "filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 528 (190.9 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 104/237 (43%), Positives = 151/237 (63%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATA + V++DIL  L++   ++L+ SF+R NL YE+  K    L +I   I  RF 
Sbjct:   627 MALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFS 686

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
              + GIIYC SK  C   S  LN+   +KT +YHAG++A +R  +QK+W    +Q++CATI
Sbjct:   687 GKSGIIYCHSKQSCEHTSMKLNEY-GLKTSFYHAGMSADKRFNIQKRWQENKIQVICATI 745

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKPDVRFVIH  L +++E YYQE+GRAGRD   S C++ Y  KD   +  +++ 
Sbjct:   746 AFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQR 805

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
              +       ++ +A+ +++ QYCE   +CRR+ +L++F E+FD   C      CDNC
Sbjct:   806 DEELSESGRESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPANCHK---QCDNC 859


>UNIPROTKB|Q5A5R4 [details] [associations]
            symbol:SGS1 "Putative uncharacterized protein SGS1"
            species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
            cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
            stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0044182 "filamentous growth of a population of
            unicellular organisms" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
            GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
            EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
            RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
            GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
            KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
        Length = 1189

 Score = 528 (190.9 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 104/237 (43%), Positives = 151/237 (63%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATA + V++DIL  L++   ++L+ SF+R NL YE+  K    L +I   I  RF 
Sbjct:   627 MALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFS 686

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
              + GIIYC SK  C   S  LN+   +KT +YHAG++A +R  +QK+W    +Q++CATI
Sbjct:   687 GKSGIIYCHSKQSCEHTSMKLNEY-GLKTSFYHAGMSADKRFNIQKRWQENKIQVICATI 745

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKPDVRFVIH  L +++E YYQE+GRAGRD   S C++ Y  KD   +  +++ 
Sbjct:   746 AFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQR 805

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
              +       ++ +A+ +++ QYCE   +CRR+ +L++F E+FD   C      CDNC
Sbjct:   806 DEELSESGRESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDPANCHK---QCDNC 859


>WB|WBGene00001865 [details] [associations]
            symbol:him-6 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006260 "DNA replication"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0051307 "meiotic chromosome separation" evidence=IMP]
            [GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
            "chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
            evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
            "reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
            damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
            GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
            RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
            SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
            PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
            KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
            InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
            GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            Uniprot:O18017
        Length = 988

 Score = 525 (189.9 bits), Expect = 1.4e-49, P = 1.4e-49
 Identities = 106/240 (44%), Positives = 147/240 (61%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATAT  +  D    L++ ++ +  +SF R NLKY++I K+  +L  + + +K  + 
Sbjct:   409 IALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYP 468

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
              + GI+YCLS+ EC  V   L  K  +    YHAGL    RV VQ+ W      ++CATI
Sbjct:   469 GKSGIVYCLSRKECETVQMMLT-KAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATI 527

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKPDVRFVIH +L KSIE YYQE+GRAGRD +PS C++LY   D  R+  M+  
Sbjct:   528 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 587

Query:   181 GQ---GFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             G    G +S      +    ++  YCE  + CRR+ L+EHFGE +D ++C+N   PCD C
Sbjct:   588 GNTTTGVRSMHLNNVL----QVVAYCENVSVCRRKMLVEHFGEVYDEQSCRNSKTPCDIC 643


>DICTYBASE|DDB_G0292130 [details] [associations]
            symbol:blm "Bloom syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
            dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
            GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
            EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
            InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
            Uniprot:Q54DM3
        Length = 1259

 Score = 524 (189.5 bits), Expect = 3.6e-49, P = 3.6e-49
 Identities = 105/244 (43%), Positives = 153/244 (62%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATAT+ VR D++  L + + +  + SF+RPNL Y+V+ K+K+ +  + + I   + 
Sbjct:   686 LALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKTKQVVDDMSKFIHSTYP 745

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D+ GI+YC+SK +C  V+  L +  KI   +YHAGL   +R  VQ  W  G ++++ ATI
Sbjct:   746 DKSGIVYCISKYDCENVAKRLRE-LKISAAHYHAGLENDERAKVQANWQKGRIKVIVATI 804

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGI+K DVRFVIH+++ KS+E YYQESGRAGRD   S C++ +   D  R   +++N
Sbjct:   805 AFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRNDLLIQN 864

Query:   181 ----GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
                 GQG  S   +       KM  YCE + +CRRQ  L +FGE+F++  CK     CDN
Sbjct:   865 SFTSGQG-SSHNTRETRDSLNKMVNYCENETDCRRQLQLAYFGENFEKSGCKK---TCDN 920

Query:   237 CLKT 240
             C+ T
Sbjct:   921 CIST 924


>POMBASE|SPAC2G11.12 [details] [associations]
            symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
            evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IGI] [GO:0000725
            "recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
            involved in replication" evidence=ISO] [GO:0006974 "response to DNA
            damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
            recombination" evidence=IMP] [GO:0009650 "UV protection"
            evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
            evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
            evidence=IDA] [GO:0034065 "replication fork processing at rDNA
            locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
            evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
            evidence=IC] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
            recombination intermediates" evidence=IMP] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
            GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
            RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
            EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
            OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
            GO:GO:0071140 Uniprot:Q09811
        Length = 1328

 Score = 519 (187.8 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 103/237 (43%), Positives = 152/237 (64%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATA + V+ DI+  LR+ + L L++SF+RPNL YE+  K K+   ++ + I +   
Sbjct:   683 MALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK-KDLYTELYRFISNGHL 741

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
              + GIIYCLS+  C +V+  L     +K  +YHAGL   +R  +Q +W +G  +I+ ATI
Sbjct:   742 HESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATI 801

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMG+DK DVRFVIH++  KS+E YYQE+GRAGRD  P+ CI+ Y  KD      ++ +
Sbjct:   802 AFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMS 861

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             G G  +E  +      +++ Q+CE K +CRR+ +L +FGE+FD+  C+ G   CD C
Sbjct:   862 GDG-DAETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKVHCRKG---CDIC 914


>UNIPROTKB|Q9DEY9 [details] [associations]
            symbol:blm "Bloom syndrome protein homolog" species:8355
            "Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
            evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
            CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
            ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
            Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
        Length = 1364

 Score = 514 (186.0 bits), Expect = 5.0e-48, P = 5.0e-48
 Identities = 112/242 (46%), Positives = 146/242 (60%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L++    +   SF+R NLKYEV+ K  K       + IK   
Sbjct:   779 MALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHH 838

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW-HTGDVQIVCA 118
              +  GIIYCLS++EC  +++ L QK  +  + YHAGLA   R  VQ KW +  D Q++CA
Sbjct:   839 PNDSGIIYCLSRHECDTMADTL-QKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICA 897

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVR+VIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   898 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLI 957

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
             +  +   S   +T       M  YCE   ECRR  LL +FGE+ F+   CK  +   CDN
Sbjct:   958 QMEKDGNSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACDN 1017

Query:   237 CL 238
             CL
Sbjct:  1018 CL 1019


>FB|FBgn0002906 [details] [associations]
            symbol:Blm "Bloom syndrome helicase ortholog" species:7227
            "Drosophila melanogaster" [GO:0006302 "double-strand break repair"
            evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
            [GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
            synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0045003 "double-strand break repair via synthesis-dependent
            strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
            evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
            [GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
            evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
            meiotic recombination" evidence=IMP] [GO:1901291 "negative
            regulation of double-strand break repair via single-strand
            annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
            InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
            UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
            MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
            EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
            CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
            OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
            NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
            GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
            Uniprot:Q9VGI8
        Length = 1487

 Score = 509 (184.2 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 108/242 (44%), Positives = 146/242 (60%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSK-EALKQIGQLIKDRF 59
             +ALTATAT  VRLDIL  L + +     +SF+R NL+Y V+ K     L  I + I+ + 
Sbjct:   897 IALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKP 956

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCK--IKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             +   GIIYCLS+ EC E S    + CK  ++ V YHAGL    R   QK W TG ++++C
Sbjct:   957 QHFSGIIYCLSRKECDETSK---KMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVIC 1013

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFV+H +L KSIE YYQE+GRAGRD   + CI+ Y   D  R+  M
Sbjct:  1014 ATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKM 1073

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC-KNGSNPCDN 236
             L + +  +    K  +    ++  YCE   +CRR   L++FGE F  + C +N    CDN
Sbjct:  1074 LDSDKALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDN 1133

Query:   237 CL 238
             C+
Sbjct:  1134 CI 1135


>ZFIN|ZDB-GENE-070702-5 [details] [associations]
            symbol:blm "Bloom syndrome" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
            regulation of mitotic recombination" evidence=IMP] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
            EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
            EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
            EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
            EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
            EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
            IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
        Length = 1420

 Score = 499 (180.7 bits), Expect = 2.2e-46, P = 2.2e-46
 Identities = 110/243 (45%), Positives = 146/243 (60%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATAT  V+ DIL  L +    V   SF+R NLKY V+ K  K+  ++  Q IK  +
Sbjct:   819 MALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKYY 878

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GI+YCLS+N+C  +++ L Q+  I  + YHAGL+   R  VQ KW   D  Q++CA
Sbjct:   879 PRDSGIVYCLSRNDCDTLADSL-QRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCA 937

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVR+VIH +L KS+E YYQESGRAGRD   S C++ Y   D  R+  ++
Sbjct:   938 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLI 997

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGE-SFDRKACKNGSNP-CDN 236
                +    ++  T +     M  +CE  AECRR  LL +FGE +F+   CK      CDN
Sbjct:   998 AMDKDGNQQSKATHINNLHSMVHFCENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICDN 1057

Query:   237 CLK 239
             C +
Sbjct:  1058 CAR 1060


>TAIR|locus:2197555 [details] [associations]
            symbol:RECQL2 "RECQ helicase L2" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
            repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
            "mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
            evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
            GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
            EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
            RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
            ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
            PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
            KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
            OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
            Genevestigator:Q9FT73 Uniprot:Q9FT73
        Length = 705

 Score = 472 (171.2 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 102/245 (41%), Positives = 148/245 (60%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS---KEALKQIGQLIKD 57
             +ALTATATQ V+ D+++ L IP  +   +S +RPNL Y V  KS   K  + +I + I++
Sbjct:   249 VALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRE 308

Query:    58 RFKD-QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
              + + + GI+YC S+ EC +++  L ++  I   YYHA + A  R  V  +W    +Q++
Sbjct:   309 SYSNNESGIVYCFSRKECEQIAGDLRER-GISADYYHADMDANMREKVHMRWSKNKLQVI 367

Query:   117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176
               T+AFGMGI+KPDVRFVIH++LSKS+E+YYQESGRAGRD LPS CI+ ++  D  R   
Sbjct:   368 VGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSS 427

Query:   177 MLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
             M+     F   +    +     + +YC+ K +CRR     HFGE    + C NG   CDN
Sbjct:   428 MV-----FYEYS---GLQNLYDIVRYCQSKTKCRRSAFFRHFGEP--SQDC-NGM--CDN 474

Query:   237 CLKTS 241
             C  +S
Sbjct:   475 CALSS 479


>UNIPROTKB|E2RS76 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
            evidence=IEA] [GO:0051782 "negative regulation of cell division"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
            "positive regulation of alpha-beta T cell proliferation"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0045120
            "pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
            [GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
            X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
            fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
            "p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
        Length = 1407

 Score = 482 (174.7 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 113/244 (46%), Positives = 142/244 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   816 MALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYH 875

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  +++ L QK  +  + YHAGL+   R  VQ KW   D  Q++CA
Sbjct:   876 PHDSGIIYCLSRRECDTMADTL-QKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICA 934

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   935 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 994

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T       M  YCE   ECRR  LL +FGES F+   CK   +  CDN
Sbjct:   995 LMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDN 1054

Query:   237 CLKT 240
             C KT
Sbjct:  1055 CCKT 1058


>UNIPROTKB|J9PB86 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
            EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
            GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
        Length = 1420

 Score = 482 (174.7 bits), Expect = 1.4e-44, P = 1.4e-44
 Identities = 113/244 (46%), Positives = 142/244 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   829 MALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYH 888

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  +++ L QK  +  + YHAGL+   R  VQ KW   D  Q++CA
Sbjct:   889 PHDSGIIYCLSRRECDTMADTL-QKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICA 947

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   948 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1007

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T       M  YCE   ECRR  LL +FGES F+   CK   +  CDN
Sbjct:  1008 LMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDN 1067

Query:   237 CLKT 240
             C KT
Sbjct:  1068 CCKT 1071


>UNIPROTKB|H0YNU5 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
            ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
            Bgee:H0YNU5 Uniprot:H0YNU5
        Length = 1286

 Score = 480 (174.0 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 111/244 (45%), Positives = 143/244 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   827 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 886

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  +++ L Q+  +  + YHAGL+   R  VQ+KW   D  Q++CA
Sbjct:   887 PYDSGIIYCLSRRECDTMADTL-QRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICA 945

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   946 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1005

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T       M  YCE   ECRR  LL +FGE+ F+   CK   +  CDN
Sbjct:  1006 MMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDN 1065

Query:   237 CLKT 240
             C KT
Sbjct:  1066 CCKT 1069


>UNIPROTKB|P54132 [details] [associations]
            symbol:BLM "Bloom syndrome protein" species:9606 "Homo
            sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
            "replication fork processing" evidence=IDA] [GO:0000781
            "chromosome, telomeric region" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
            [GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
            "lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
            evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
            [GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=IDA] [GO:0009378
            "four-way junction helicase activity" evidence=IDA] [GO:0000405
            "bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
            binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0051782 "negative regulation of cell division"
            evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
            evidence=NAS] [GO:0000724 "double-strand break repair via
            homologous recombination" evidence=NAS] [GO:0010165 "response to
            X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
            [GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
            "helicase activity" evidence=IDA] [GO:0045910 "negative regulation
            of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
            evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
            "ATPase activity" evidence=IDA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IMP] [GO:0000729 "DNA double-strand break processing"
            evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
            Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
            GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
            GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
            EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
            RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
            PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
            IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
            DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
            GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
            GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
            MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
            InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
            EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
            PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
            Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
            GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
            GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
            GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
            Uniprot:P54132
        Length = 1417

 Score = 480 (174.0 bits), Expect = 2.3e-44, P = 2.3e-44
 Identities = 111/244 (45%), Positives = 143/244 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   827 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 886

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  +++ L Q+  +  + YHAGL+   R  VQ+KW   D  Q++CA
Sbjct:   887 PYDSGIIYCLSRRECDTMADTL-QRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICA 945

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   946 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1005

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T       M  YCE   ECRR  LL +FGE+ F+   CK   +  CDN
Sbjct:  1006 MMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDN 1065

Query:   237 CLKT 240
             C KT
Sbjct:  1066 CCKT 1069


>UNIPROTKB|F1PNP1 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
            RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
            KEGG:cfa:486641 Uniprot:F1PNP1
        Length = 646

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 100/242 (41%), Positives = 145/242 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
             M LTATAT  V  D  K L +        SF+RPNL YE+  K   +++ ++ I +LI  
Sbjct:   251 MGLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K Q GIIYC S+ +  +V+  L QK  I+   YHA +    +  V ++W   ++Q+V 
Sbjct:   311 RYKGQSGIIYCFSQKDSEQVTVSL-QKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRF+IH+++SKSIE+YYQESGRAGRD++ + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E ++ +AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWNAEAC---NRMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>UNIPROTKB|P46063 [details] [associations]
            symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
            "Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
            evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
            EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
            EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
            EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
            IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
            UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
            ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
            STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
            PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
            Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
            CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
            HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
            PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
            PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
            EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
            ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
            Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
        Length = 649

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 103/244 (42%), Positives = 144/244 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
             + LTATAT  V  D  K L I        SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct:   251 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K Q GIIYC S+ +  +V+  L Q   I    YHA L    +  V +KW   ++Q+V 
Sbjct:   311 RYKGQSGIIYCFSQKDSEQVTVSL-QNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E ++ +AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEAC---NKMCDNC 478

Query:   238 LKTS 241
              K S
Sbjct:   479 CKDS 482


>UNIPROTKB|E1BQ04 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IEA]
            [GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0031297 "replication fork processing"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
            "nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
            "bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
            GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
            Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
        Length = 1417

 Score = 477 (173.0 bits), Expect = 4.8e-44, P = 4.8e-44
 Identities = 112/244 (45%), Positives = 140/244 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   827 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 886

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  ++  L Q   +  + YHAGL+   R  VQ KW   D  Q++CA
Sbjct:   887 PHDSGIIYCLSRRECDTMAETL-QNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICA 945

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S CI+ Y   D +R+  ++
Sbjct:   946 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLI 1005

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T       M  YCE   ECRR  LL +FGE+ F+   CK   +  CDN
Sbjct:  1006 LMEKDGNRHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDN 1065

Query:   237 CLKT 240
             C KT
Sbjct:  1066 CYKT 1069


>UNIPROTKB|F1ND40 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0000079 "regulation of cyclin-dependent protein
            serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
            DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
            evidence=IEA] [GO:0000729 "DNA double-strand break processing"
            evidence=IEA] [GO:0000781 "chromosome, telomeric region"
            evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
            [GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
            binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
            "replication fork" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
            "four-way junction helicase activity" evidence=IEA] [GO:0010165
            "response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
            evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0045950 "negative regulation of mitotic recombination"
            evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
            evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
            proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
            evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
            [GO:0051782 "negative regulation of cell division" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
            GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
            ArrayExpress:F1ND40 Uniprot:F1ND40
        Length = 1142

 Score = 474 (171.9 bits), Expect = 6.5e-44, P = 6.5e-44
 Identities = 109/241 (45%), Positives = 140/241 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DI   L +    V   SF+R NLKY+V+ K  K+      + IK   
Sbjct:   557 MALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYH 616

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS++EC   +  L QK  +  + YHAGL    R +VQKKW   +  Q++CA
Sbjct:   617 PHDSGIIYCLSRHECDTTAAIL-QKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 675

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVR+VIH +L KSIE YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   676 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 735

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSNP-CDN 236
                +   S   +T       M  YCE   +CRR  LL +FGE+ F+   CK+     CDN
Sbjct:   736 LMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDN 795

Query:   237 C 237
             C
Sbjct:   796 C 796


>WB|WBGene00019334 [details] [associations]
            symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
            activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
            RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
            ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
            GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
            WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
            NextBio:887386 Uniprot:Q9TXJ8
        Length = 631

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 99/239 (41%), Positives = 140/239 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI---GKSKEALKQIGQLIKD 57
             + LTATAT +V  D+   L I  AL     F+R NLKY+V+   G   E  ++I + IK 
Sbjct:   269 LGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKR 328

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
              F  Q GIIYCLS+N+C +V+  L     IK  +YHA +    R    + W +G +Q++ 
Sbjct:   329 DFAGQTGIIYCLSRNDCEKVAKALKSH-GIKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 387

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKP+VRFVIH++L KSIE+YYQESGRAGRD  P+ CI+ Y+  D  +   M
Sbjct:   388 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSM 447

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
             ++          +T +     M +Y    + CRR  L EHF E+++   C+   + C+N
Sbjct:   448 VQQE--------RTGIQNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCEN 498


>UNIPROTKB|F1P3V1 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
            "regulation of cyclin-dependent protein serine/threonine kinase
            activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000729 "DNA double-strand break processing" evidence=IEA]
            [GO:0000781 "chromosome, telomeric region" evidence=IEA]
            [GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
            cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005657 "replication fork"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
            activity" evidence=IEA] [GO:0010165 "response to X-ray"
            evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
            [GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IEA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
            mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=IEA] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
            "regulation of binding" evidence=IEA] [GO:0051259 "protein
            oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
            cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
            GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
            GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
            GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
            EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
            OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
        Length = 1380

 Score = 474 (171.9 bits), Expect = 9.6e-44, P = 9.6e-44
 Identities = 109/241 (45%), Positives = 140/241 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DI   L +    V   SF+R NLKY+V+ K  K+      + IK   
Sbjct:   795 MALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYH 854

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS++EC   +  L QK  +  + YHAGL    R +VQKKW   +  Q++CA
Sbjct:   855 PHDSGIIYCLSRHECDTTAAIL-QKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 913

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVR+VIH +L KSIE YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   914 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 973

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSNP-CDN 236
                +   S   +T       M  YCE   +CRR  LL +FGE+ F+   CK+     CDN
Sbjct:   974 LMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDN 1033

Query:   237 C 237
             C
Sbjct:  1034 C 1034


>MGI|MGI:1328362 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like"
            species:10090 "Mus musculus" [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
            break processing" evidence=ISO] [GO:0000733 "DNA strand
            renaturation" evidence=ISO] [GO:0000800 "lateral element"
            evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
            [GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
            "replication fork" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
            to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISO] [GO:0009378 "four-way junction
            helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
            evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
            [GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
            "replication fork processing" evidence=ISO] [GO:0036310 "annealing
            helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
            DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
            evidence=IDA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
            DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
            of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
            cell differentiation" evidence=IMP] [GO:0046641 "positive
            regulation of alpha-beta T cell proliferation" evidence=IMP]
            [GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
            "protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=IMP] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
            Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
            GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
            HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
            CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
            EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
            RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
            SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
            PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
            KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
            Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
            GermOnline:ENSMUSG00000030528 Uniprot:O88700
        Length = 1416

 Score = 474 (171.9 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 111/244 (45%), Positives = 142/244 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K  K+      + I+   
Sbjct:   835 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 894

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS+ EC  +++ L Q+  +  + YHAGL+   R  VQ KW   D  Q++CA
Sbjct:   895 PYDSGIIYCLSRRECDTMADTL-QREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICA 953

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   954 TIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 1013

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDN 236
                +       +T +     M  YCE   ECRR  LL +FGE  F+   CK   +  CDN
Sbjct:  1014 MMEKDGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCDN 1073

Query:   237 CLKT 240
             C KT
Sbjct:  1074 CCKT 1077


>TAIR|locus:2127998 [details] [associations]
            symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
            [GO:0009378 "four-way junction helicase activity" evidence=IDA]
            [GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
            "3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
            GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
            HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
            IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
            UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
            PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
            KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
            InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
            ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
        Length = 713

 Score = 464 (168.4 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 102/239 (42%), Positives = 143/239 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS--KEALKQIGQLIKDR 58
             +ALTATA   V+ D++ +L + + LVL++SF+RPN+ YEV  K     A   +G L+K  
Sbjct:   195 LALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKS- 253

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
               + C IIYCL +  C ++S  L+    I +  YHAGL ++ R  V   W +   QI+ A
Sbjct:   254 CGNICAIIYCLERTTCDDLSVHLSS-IGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVA 312

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             T+AFGMGIDK DVR V H  + KS+ES+YQESGRAGRD LPS  ++ Y   D  ++  +L
Sbjct:   313 TVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL 372

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             RN +  KS + K   +  +++  YCE    CRR+ +LE FGE F  + CK     CD C
Sbjct:   373 RNSENKKSSSSKKPTSDFEQIVTYCEGSG-CRRKKILESFGEEFPVQQCKK---TCDAC 427


>UNIPROTKB|Q9I920 [details] [associations]
            symbol:BLM "Bloom syndrome protein homolog" species:9031
            "Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
            double-strand break processing" evidence=ISS] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
            ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
            HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
            OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
        Length = 1142

 Score = 468 (169.8 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 107/241 (44%), Positives = 139/241 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRF 59
             MALTATA   V+ DI   L +    V   SF+R NLKY+V+ K  K+      + IK   
Sbjct:   557 MALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYH 616

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
                 GIIYCLS++EC   +  L QK  +  + YHAGL    R +VQKKW   +  Q++CA
Sbjct:   617 PHDSGIIYCLSRHECDTTAAIL-QKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 675

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             TIAFGMGIDKPDVR+VIH +L KS+E YY ESGRAGRD   S C++ Y   D +R+  ++
Sbjct:   676 TIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 735

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSNP-CDN 236
                +   S   +T       M  YCE   +CRR  LL +FGE+ F+   CK+     CDN
Sbjct:   736 LMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDN 795

Query:   237 C 237
             C
Sbjct:   796 C 796


>RGD|1311071 [details] [associations]
            symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
            species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
            renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0015630 "microtubule cytoskeleton"
            evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 101/242 (41%), Positives = 140/242 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKD 57
             + LTATAT  V  D  K L +   L    SF+RPNL YEV  K   A   ++ I  LI  
Sbjct:   251 IGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K + GIIYC S+ +  +V+  L QK  ++   YHA +    R  V  +W   ++Q+V 
Sbjct:   311 RYKGKSGIIYCFSQKDSEQVTISL-QKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+  + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E ++  AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNISKCRRALIAQHFDEVWNADAC---NKMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>UNIPROTKB|Q6AYJ1 [details] [associations]
            symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
            EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
            UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
            STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
            KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
            Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
        Length = 621

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 101/242 (41%), Positives = 140/242 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKD 57
             + LTATAT  V  D  K L +   L    SF+RPNL YEV  K   A   ++ I  LI  
Sbjct:   251 IGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K + GIIYC S+ +  +V+  L QK  ++   YHA +    R  V  +W   ++Q+V 
Sbjct:   311 RYKGKSGIIYCFSQKDSEQVTISL-QKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+  + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E ++  AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNISKCRRALIAQHFDEVWNADAC---NKMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>MGI|MGI:103021 [details] [associations]
            symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
            GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
            EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
            IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
            UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
            PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
            Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
            KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
            Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
            GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
        Length = 648

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 102/242 (42%), Positives = 140/242 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKD 57
             M LTATAT  V  D+ K L +   L    SF+RPNL YEV  K   A    + I +LI  
Sbjct:   251 MGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K Q GIIYC S+ +  +++  L QK  I    YHA +    +  V  +W   ++Q+V 
Sbjct:   311 RYKGQSGIIYCFSQKDSEQITISL-QKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+  + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E ++  AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVWNADAC---NKMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>UNIPROTKB|A0JN36 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
            activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
            HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
            EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
            RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
            Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
            InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
        Length = 649

 Score = 452 (164.2 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 100/242 (41%), Positives = 142/242 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
             + LTATAT  V  D  K L +        SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct:   251 IGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K Q GIIYC S+ +  +V+  L QK  I    YHA +    +  V ++W   ++Q+V 
Sbjct:   311 RYKGQSGIIYCFSQKDSEQVTISL-QKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+   +CRR  + +HF E +  +AC   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNINKCRRVLIAQHFDEVWSPEAC---NKMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>UNIPROTKB|F1SR01 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
            renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
            Uniprot:F1SR01
        Length = 649

 Score = 450 (163.5 bits), Expect = 1.8e-42, P = 1.8e-42
 Identities = 99/242 (40%), Positives = 141/242 (58%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
             + LTATAT  V  D  K L +        SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct:   251 IGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K Q GIIYC S+ +  +V+  L QK  I    YHA +    +  V ++W   ++Q+V 
Sbjct:   311 RYKGQSGIIYCFSQKDSEQVTVSL-QKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+  + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +  +M  YC+  ++CRR  + +HF E +  + C   +  CDNC
Sbjct:   430 V------VME--NVGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWSPEEC---NKMCDNC 478

Query:   238 LK 239
              K
Sbjct:   479 CK 480


>TIGR_CMR|CBU_0472 [details] [associations]
            symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
            GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
            GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
            ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
            Uniprot:Q83E59
        Length = 601

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 105/240 (43%), Positives = 142/240 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA +  R DIL+ LR+  A V   SF+RPN++Y ++ K K +  Q+   +KDR K
Sbjct:   170 IALTATADKQTRQDILQRLRLTKANVHIASFNRPNIRYTLLEKQK-SYNQLVNFLKDR-K 227

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
                GI+YCLS+N   EV+  L Q      + YHAGL A QR   Q+ +   DV I+ ATI
Sbjct:   228 ADFGIVYCLSRNRVEEVAAKL-QADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATI 286

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKP+VRFV+H  L K IE YYQE+GRAGRD LPS  ++LY  +D + +   + N
Sbjct:   287 AFGMGIDKPNVRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKSFIEN 346

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
             G     +  +  + +   M  + E +  CRR+ LL +F ES     C N    CD CL +
Sbjct:   347 GNNEIRKRIE--LHKLNCMSAFAEART-CRRRVLLNYFNESLTED-CGN----CDICLNS 398


>DICTYBASE|DDB_G0272384 [details] [associations]
            symbol:DDB_G0272384 "Bloom syndrome-like protein"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
            GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
            TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
            EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
            OMA:YQQTGRA Uniprot:Q55A06
        Length = 973

 Score = 391 (142.7 bits), Expect = 7.8e-42, Sum P(2) = 7.8e-42
 Identities = 78/175 (44%), Positives = 116/175 (66%)

Query:     2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKDR 58
             A TA+AT +V +DI  +L++ + + + +SF RPNL Y+V  K  +    LK I   I  +
Sbjct:   640 AFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISFK 699

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
             + +  GIIYC +  EC  V+++L+++  + + +YHA L+  QR  +QK W  G+ +IVC 
Sbjct:   700 YPNSTGIIYCATVRECEIVADYLSER-GLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCT 758

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173
             TIAFGMGIDK D RFVIH+++ +S+ESYYQ++GRAGRD   S C++ Y K D  R
Sbjct:   759 TIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMR 813

 Score = 90 (36.7 bits), Expect = 7.8e-42, Sum P(2) = 7.8e-42
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query:   185 KSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKTS 241
             K +   T +     +  +C  +++CRR TLL +FGE+   K+C    N CD C+  S
Sbjct:   872 KIQQTSTKLEMLDSVASFCSTQSKCRRVTLLNYFGEN--SKSC---GNMCDICISNS 923


>UNIPROTKB|F1NPI7 [details] [associations]
            symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
            evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
            cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
            GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
            Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
        Length = 661

 Score = 439 (159.6 bits), Expect = 4.3e-41, P = 4.3e-41
 Identities = 99/242 (40%), Positives = 138/242 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
             + LTATAT  V  D    L I   +    SF+RPNL YEV  K   +++ ++ I +LI  
Sbjct:   251 IGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLING 310

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             R+K   GI+YC S+ +  +V+  L QK  IK   YHA + A+ +  V K W    +Q+V 
Sbjct:   311 RYKGLSGIVYCFSQKDSEQVTVSL-QKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVV 369

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+  + CI+ Y   D  R+  M
Sbjct:   370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDIFRISSM 429

Query:   178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             +        E       +   M  YC+   +CRR  +  HF E ++   C   +  CDNC
Sbjct:   430 V------VME--NVGQEKLYDMVSYCQNMNKCRRVLIARHFDEVWESANC---NRMCDNC 478

Query:   238 LK 239
              +
Sbjct:   479 CR 480


>ZFIN|ZDB-GENE-050809-134 [details] [associations]
            symbol:recql "RecQ protein-like (DNA helicase
            Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
            Uniprot:F1Q4T3
        Length = 640

 Score = 435 (158.2 bits), Expect = 8.9e-41, P = 8.9e-41
 Identities = 100/238 (42%), Positives = 136/238 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKE-ALKQIGQLIKDRF 59
             + LTATAT +V  D  K L +   + L   F+RPNL YEV  K  E    QI  LI+ R+
Sbjct:   257 IGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKDNEDCTDQIASLIRGRY 316

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
             K+Q GI+Y  S+ +   V+  L QK  I    YHA +    + +V ++W +  +Q+V AT
Sbjct:   317 KNQSGIVYVFSQKDAEVVATEL-QKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVAT 375

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179
             +AFGMGIDK DVRFVIH+T+SKSIE+YYQESGRAGRD+ P+ CIV +   D  R+  M+ 
Sbjct:   376 VAFGMGIDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVFFGFMDIFRISTMV- 434

Query:   180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
                    E   T   +   M  YC+    CRR  +  HF E ++ + C   +  CD C
Sbjct:   435 -----VME--NTGQQKLHNMVAYCQNVDRCRRAMMAIHFDEVWNDEEC---NEMCDVC 482


>UNIPROTKB|Q9KVF0 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 418 (152.2 bits), Expect = 6.0e-39, P = 6.0e-39
 Identities = 106/243 (43%), Positives = 146/243 (60%)

Query:     1 MALTATATQSVRLDILKALRI--PHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR 58
             MALTATA  + R DI++ L++  PH  +   SFDRPN++Y ++ K K   + I  L   R
Sbjct:   190 MALTATADDATRHDIMQRLQLNEPHQYL--GSFDRPNIRYMLVEKHKPVSQVIRYLETQR 247

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQK-C--KIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                QCGIIYC S+ + VE+   L +K C   I+   YHAG+ A +R  VQ+ +   D+QI
Sbjct:   248 --GQCGIIYCGSRKK-VEM---LTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQI 301

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V AT+AFGMGI+KP+VRFV+H  + ++IESYYQE+GRAGRD LP+  ++LY   D + + 
Sbjct:   302 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
              ML        +  ++    A  M  + E +  CRRQ LL +FGE  D K C N    CD
Sbjct:   362 RMLDEKPDGAQKQVESHKLTA--MGAFAEAQT-CRRQVLLNYFGEYRD-KPCGN----CD 413

Query:   236 NCL 238
              CL
Sbjct:   414 ICL 416


>TIGR_CMR|VC_0196 [details] [associations]
            symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
            RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
            DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
            Uniprot:Q9KVF0
        Length = 620

 Score = 418 (152.2 bits), Expect = 6.0e-39, P = 6.0e-39
 Identities = 106/243 (43%), Positives = 146/243 (60%)

Query:     1 MALTATATQSVRLDILKALRI--PHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR 58
             MALTATA  + R DI++ L++  PH  +   SFDRPN++Y ++ K K   + I  L   R
Sbjct:   190 MALTATADDATRHDIMQRLQLNEPHQYL--GSFDRPNIRYMLVEKHKPVSQVIRYLETQR 247

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQK-C--KIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                QCGIIYC S+ + VE+   L +K C   I+   YHAG+ A +R  VQ+ +   D+QI
Sbjct:   248 --GQCGIIYCGSRKK-VEM---LTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQI 301

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V AT+AFGMGI+KP+VRFV+H  + ++IESYYQE+GRAGRD LP+  ++LY   D + + 
Sbjct:   302 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
              ML        +  ++    A  M  + E +  CRRQ LL +FGE  D K C N    CD
Sbjct:   362 RMLDEKPDGAQKQVESHKLTA--MGAFAEAQT-CRRQVLLNYFGEYRD-KPCGN----CD 413

Query:   236 NCL 238
              CL
Sbjct:   414 ICL 416


>TIGR_CMR|GSU_0898 [details] [associations]
            symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
            GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
            ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
            Uniprot:Q74ER2
        Length = 603

 Score = 414 (150.8 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 97/238 (40%), Positives = 142/238 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA    R DI+  L +  A +  T FDRPN++Y V+ K K   +Q+ + +  R +
Sbjct:   170 IALTATADAQTRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQKP-FRQLEEFLATRPR 228

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             +  GI+YCLS+    EV+  L +   ++   YHAGLA  +R  VQ+ +   D+++V AT+
Sbjct:   229 E-AGIVYCLSRKRVEEVAEKL-RAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATV 286

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDKP+VRFV+H  L K+IESYYQE+GRAGRD LP+  ++L+   D      ++ +
Sbjct:   287 AFGMGIDKPNVRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVSRSLIES 346

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
             G G   E  +  + +   M  + E    CRR+ LL +FGE  + + C N    CD CL
Sbjct:   347 G-G-NPEQVRIELHKLNAMVGFAEALV-CRRRALLGYFGERLE-EPCGN----CDLCL 396


>UNIPROTKB|P15043 [details] [associations]
            symbol:recQ species:83333 "Escherichia coli K-12"
            [GO:0046914 "transition metal ion binding" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
            "DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
            [GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
            helicase activity" evidence=IDA] [GO:0017117 "single-stranded
            DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
            [GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
            "DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
            evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
            "SOS response" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
            GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
            KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
            PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
            ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
            MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
            EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
            KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
            EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
            BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
            BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
            Genevestigator:P15043 Uniprot:P15043
        Length = 609

 Score = 404 (147.3 bits), Expect = 2.1e-37, P = 2.1e-37
 Identities = 96/239 (40%), Positives = 143/239 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATA  + R DI++ L +   L+  +SFDRPN++Y ++ K K  L Q+ + ++++ +
Sbjct:   178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP-LDQLMRYVQEQ-R 235

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
              + GIIYC S+ +  + +  L  K  I    YHAGL    R  VQ+K+   D+QIV AT+
Sbjct:   236 GKSGIIYCNSRAKVEDTAARLQSK-GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV-CMLR 179
             AFGMGI+KP+VRFV+H  + ++IESYYQE+GRAGRD LP+  ++ Y   D + +  C+  
Sbjct:   295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354

Query:   180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
               QG   +  +  +     M  + E +  CRR  LL +FGE   ++ C N    CD CL
Sbjct:   355 KPQGQLQDIERHKL---NAMGAFAEAQT-CRRLVLLNYFGEG-RQEPCGN----CDICL 404


>WB|WBGene00006944 [details] [associations]
            symbol:wrn-1 species:6239 "Caenorhabditis elegans"
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040018 "positive regulation of
            multicellular organism growth" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
            "response to ionizing radiation" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
            process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005662 "DNA replication factor A complex" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
            GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
            GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
            GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
            PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
            IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
            EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
            UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
            InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
        Length = 1056

 Score = 392 (143.0 bits), Expect = 3.3e-35, P = 3.3e-35
 Identities = 95/242 (39%), Positives = 135/242 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-DRF 59
             +ALTATAT  VR D++  LR+   L+  TSFDR NL Y  +  SK+  + +G  +K D  
Sbjct:   382 IALTATATVRVRDDVIANLRLRKPLITTTSFDRKNL-YISVHSSKDMAEDLGLFMKTDEV 440

Query:    60 KDQ-CG---IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
             K +  G   IIYC +K + V+  N + ++  +++ +YHAGL   QR      +    +  
Sbjct:   441 KGRHFGGPTIIYCQTK-QMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITT 499

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             + AT+AFGMGIDKPDVR VIH     +IESYYQE GRAGRD  PS+C V +  KD + + 
Sbjct:   500 IVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIK 559

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
               LRN Q  K E  +      ++++        CRR  LL+HF  S+ +      ++ CD
Sbjct:   560 FKLRNSQQ-KEEVVENLTMMLRQLELVLTTVG-CRRYQLLKHFDPSYAKPPTMQ-ADCCD 616

Query:   236 NC 237
              C
Sbjct:   617 RC 618


>RGD|1308810 [details] [associations]
            symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
            protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
            "bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
            maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
            processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
            evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
            [GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
            binding" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
            "helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
            fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
            process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009378 "four-way junction helicase activity"
            evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
            [GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
            "annealing helicase activity" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045910 "negative regulation of DNA recombination"
            evidence=ISO] [GO:0045950 "negative regulation of mitotic
            recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
            differentiation" evidence=ISO] [GO:0046641 "positive regulation of
            alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
            "regulation of binding" evidence=ISO] [GO:0051259 "protein
            oligomerization" evidence=ISO] [GO:0051276 "chromosome
            organization" evidence=ISO] [GO:0051782 "negative regulation of
            cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0000781 "chromosome, telomeric region"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
            UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
        Length = 999

 Score = 390 (142.3 bits), Expect = 4.9e-35, P = 4.9e-35
 Identities = 90/177 (50%), Positives = 113/177 (63%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS--KEALKQIGQLIKDR 58
             MALTATA   V+ DIL  L+I    V   SF+R NLKY V+ K   K AL  +  + K  
Sbjct:   818 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHH 877

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVC 117
               D  GIIYCLS+ EC  +++ L Q+  +  + YHAGL+   R  VQ KW   D  Q++C
Sbjct:   878 PYDS-GIIYCLSRKECDTMADTL-QREGLAALAYHAGLSDSARDEVQHKWINQDNCQVIC 935

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV 174
             ATIAFGMGIDKPDVRFV+H +L KS+E YYQESGRAGRD   S C++ Y   D +R+
Sbjct:   936 ATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRL 992


>UNIPROTKB|J3KTQ2 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
            Ensembl:ENST00000578201 Uniprot:J3KTQ2
        Length = 480

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 93/255 (36%), Positives = 138/255 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHAL-VLETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   + + +T   R NL Y+V          G  K+  LK
Sbjct:   189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKW 108
              +GQ   D+    CGI+YC ++  C +++  +   C+ +    YHAGL A +R +VQ  W
Sbjct:   249 ALGQEA-DKGLSGCGIVYCRTREACEQLA--IELSCRGVNAKAYHAGLKASERTLVQNDW 305

Query:   109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168
                 V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y +
Sbjct:   306 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 365

Query:   169 KDFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
              D  +V       V  L+  +G K+    T MA    +  +CE+   CR   + ++FG++
Sbjct:   366 NDRDQVSFLIRKEVAKLQEKRGNKASDKATIMA-FDALVTFCEELG-CRHAAIAKYFGDA 423

Query:   222 FDRKACKNGSNPCDN 236
                 AC  G + C N
Sbjct:   424 LP--ACAKGCDHCQN 436


>DICTYBASE|DDB_G0268512 [details] [associations]
            symbol:wrn "Werner syndrome protein" species:44689
            "Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
            "DNA replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
            GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
            EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
            EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
            OMA:FLFNKTE Uniprot:B0G0Y4
        Length = 1136

 Score = 316 (116.3 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 77/208 (37%), Positives = 120/208 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHA--LVLETSFDRPNLKYEVIGKSK---EALKQIGQLI 55
             MA+TATAT+S+  DI+  L I +    + ++S +RPN+ Y+VI K K      K I  ++
Sbjct:   454 MAVTATATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDIL 513

Query:    56 KDRFK-----DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110
              +  K         IIYC +     E++ FL    KI++  YH+ L  +QR    K +  
Sbjct:   514 LETRKTIGVVSNSTIIYCTTIQIANELNRFLCDN-KIQSNVYHSQLGDKQRDETLKNFLF 572

Query:   111 GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
                +++ ATIAFGMGIDK DVR +I+   SKS+E +YQESGRAGRD L S+ +++Y  +D
Sbjct:   573 NKTEVIVATIAFGMGIDKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQD 632

Query:   171 FSRVVCMLRNGQGFKSEAFKTAMAQAKK 198
             F +   +LRN   +   +  ++ +Q+ +
Sbjct:   633 FVKSSFLLRNNNNYNKYSSSSSSSQSSQ 660

 Score = 95 (38.5 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 22/53 (41%), Positives = 29/53 (54%)

Query:   187 EAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLK 239
             E  K+   +  K ++    K +CRRQ LLE FGE F   A  NG   CDNC++
Sbjct:   677 EPKKSENEKLLKFKEILINKVKCRRQMLLEAFGEEFIIDA-NNGCASCDNCVE 728


>UNIPROTKB|F1PZR2 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
            Uniprot:F1PZR2
        Length = 1336

 Score = 381 (139.2 bits), Expect = 7.7e-34, P = 7.7e-34
 Identities = 98/248 (39%), Positives = 138/248 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA+ S+R DI++ L + +  +  T FDRPNL  EV  K+   L+ + Q +  + +
Sbjct:   677 VALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTR 736

Query:    61 DQC----G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ 114
             +      G  IIYC S+    +V+  L +K K+    YHAGL  + R  +  ++   ++Q
Sbjct:   737 NSIWEFEGPTIIYCPSRKTTEQVTAEL-RKLKLACGAYHAGLDIKSRREIHHRFMRDEIQ 795

Query:   115 IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV 174
              V ATIAFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C VL+   D    
Sbjct:   796 CVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD---- 851

Query:   175 VCMLRNGQG-FKSEAFKT-AMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--G 230
             +C+ R+      SE F+   +    KM++Y      CRRQ +L HF +   RKA     G
Sbjct:   852 ICLNRHRLSEITSEKFRLYKLKMMAKMEKYLHS-TRCRRQLILSHFEDKQLRKASVGIMG 910

Query:   231 SNPC-DNC 237
             +  C DNC
Sbjct:   911 TEQCCDNC 918


>ZFIN|ZDB-GENE-070702-2 [details] [associations]
            symbol:wrn "Werner syndrome" species:7955 "Danio
            rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0044237
            "cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
            SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
            ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
        Length = 1436

 Score = 236 (88.1 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
 Identities = 55/125 (44%), Positives = 73/125 (58%)

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V AT+AFGMGI+K D+R VIH    K +ESYYQE GRAGRD LPS C VL+   D +   
Sbjct:   770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
              +L   +  +  ++K  M    KM++Y     +CRR+ +L HF +   RK      GS+ 
Sbjct:   830 FILNQSKSERFRSYKIDMMA--KMEKYLNS-TKCRRKLILCHFEDKRLRKVTSGILGSSQ 886

Query:   234 C-DNC 237
             C DNC
Sbjct:   887 CCDNC 891

 Score = 176 (67.0 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
 Identities = 45/126 (35%), Positives = 75/126 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQ-LIKDR- 58
             +ALTATA+ S+R DI+K+L + + ++  TSFDRPNL  +V  KS + ++ + + L+K + 
Sbjct:   595 LALTATASPSIRDDIIKSLHLINPMITCTSFDRPNLYLDVNRKSGDVIQDLKRFLVKKKG 654

Query:    59 --FK-DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
               ++ +   I+YC SK E   V+  L  K  I    YHAGL+ +QR   Q ++   ++Q+
Sbjct:   655 GGYEFEGSAIVYCPSKKEAERVTTALF-KLDIPCGVYHAGLSIKQRRETQHQFMRDEIQV 713

Query:   116 VCATIA 121
                 +A
Sbjct:   714 HAYDVA 719


>UNIPROTKB|E1BKM5 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
            UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
            KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
        Length = 987

 Score = 376 (137.4 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 94/254 (37%), Positives = 138/254 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  VR D+  AL +   +   +T   R NL Y+V          G  ++  LK
Sbjct:   188 VALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLRDFCLK 247

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109
              +GQ   D+    CGIIYC ++  C +++  L+ +  +    YHAGL A +R +VQ +W 
Sbjct:   248 ALGQKA-DKGLSGCGIIYCRTREACEQLATELSYR-GVNAKAYHAGLKAPERTLVQNEWM 305

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
                V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y + 
Sbjct:   306 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRS 365

Query:   170 DFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESF 222
             D  +V       V  L+  +G K+   K A+     +  +CE+   CR   + ++FG+S 
Sbjct:   366 DRDQVSFLIRKEVAKLQEKRGNKASD-KAAVLAFDALVAFCEESG-CRHAAIAKYFGDS- 422

Query:   223 DRKACKNGSNPCDN 236
                AC  G + C N
Sbjct:   423 -PPACTKGCDCCQN 435


>UNIPROTKB|E1BEE6 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
            EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
            EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
            EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
            EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
            EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
            EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
            EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
            EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
            EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
            EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
            EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
            EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
            IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
        Length = 1404

 Score = 378 (138.1 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 100/245 (40%), Positives = 136/245 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA  SVR DI+  L +    +  T FDRPNL  EV  K+ + L+ + Q +  +  
Sbjct:   666 VALTATAGSSVREDIVCCLNLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVCKSS 725

Query:    61 DQC---G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                   G  IIYC S+    +V+  L +K K+    YHAGL+   R  V  ++   ++Q 
Sbjct:   726 SAWEFEGPTIIYCPSRKMTEQVTAEL-KKLKLACGTYHAGLSINLRKQVHHRFMRDEIQC 784

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V AT+AFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C VL+   D +   
Sbjct:   785 VIATVAFGMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNR 844

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GS-N 232
             C+L   +  K   +K  M    KM++Y    ++CRRQ +L HF +   RKA     G+ N
Sbjct:   845 CLLSEIRNEKFRLYKLKMMG--KMEKYL-YSSKCRRQIILSHFEDKQLRKASVGIMGTEN 901

Query:   233 PCDNC 237
              CDNC
Sbjct:   902 CCDNC 906


>UNIPROTKB|F1PZR3 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
            Uniprot:F1PZR3
        Length = 1499

 Score = 377 (137.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 97/247 (39%), Positives = 136/247 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA+ S+R DI++ L + +  +  T FDRPNL  EV  K+   L+ + Q +  +  
Sbjct:   758 VALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTS 817

Query:    61 -----DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                  +   IIYC S+    +V+  L +K K+    YHAGL  + R  +  ++   ++Q 
Sbjct:   818 SIWEFEGPTIIYCPSRKTTEQVTAEL-RKLKLACGAYHAGLDIKSRREIHHRFMRDEIQC 876

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C VL+   D    +
Sbjct:   877 VVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD----I 932

Query:   176 CMLRNGQG-FKSEAFKT-AMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GS 231
             C+ R+      SE F+   +    KM++Y      CRRQ +L HF +   RKA     G+
Sbjct:   933 CLNRHRLSEITSEKFRLYKLKMMAKMEKYLHS-TRCRRQLILSHFEDKQLRKASVGIMGT 991

Query:   232 NPC-DNC 237
               C DNC
Sbjct:   992 EQCCDNC 998


>UNIPROTKB|F1PUF8 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
            OMA:TERICLM Uniprot:F1PUF8
        Length = 1574

 Score = 377 (137.8 bits), Expect = 2.6e-33, P = 2.6e-33
 Identities = 97/247 (39%), Positives = 136/247 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA+ S+R DI++ L + +  +  T FDRPNL  EV  K+   L+ + Q +  +  
Sbjct:   790 VALTATASSSIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTS 849

Query:    61 -----DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                  +   IIYC S+    +V+  L +K K+    YHAGL  + R  +  ++   ++Q 
Sbjct:   850 SIWEFEGPTIIYCPSRKTTEQVTAEL-RKLKLACGAYHAGLDIKSRREIHHRFMRDEIQC 908

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C VL+   D    +
Sbjct:   909 VVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPAD----I 964

Query:   176 CMLRNGQG-FKSEAFKT-AMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GS 231
             C+ R+      SE F+   +    KM++Y      CRRQ +L HF +   RKA     G+
Sbjct:   965 CLNRHRLSEITSEKFRLYKLKMMAKMEKYLHS-TRCRRQLILSHFEDKQLRKASVGIMGT 1023

Query:   232 NPC-DNC 237
               C DNC
Sbjct:  1024 EQCCDNC 1030


>FB|FBgn0027375 [details] [associations]
            symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
            melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
            evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
            ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
            evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
            mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
            evidence=IDA] [GO:0045002 "double-strand break repair via
            single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
            mitotic anaphase" evidence=IDA] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
            TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
            FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
            PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
            Uniprot:Q9U5E0
        Length = 1058

 Score = 374 (136.7 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 97/259 (37%), Positives = 143/259 (55%)

Query:     1 MALTATATQSVRLDILKALRI--PHALVLETSFDRPNLKYEVIGKS--KEALKQIGQLIK 56
             +ALTATA++ V+ DI K LR+  P A     SF R NL Y+++ K+  ++  + +    +
Sbjct:   181 LALTATASREVKEDIYKQLRLHQPVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFAR 239

Query:    57 D------RFKDQ------CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVV 104
                     FKD       CGI+YC ++++ VE       K  I  V YHAGL   +R  V
Sbjct:   240 HCLGNPKEFKDTPKPQRGCGIVYCRTRDQ-VERMAIGVTKQGIGAVAYHAGLKTGERTEV 298

Query:   105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV 164
             Q+ W  GD  I+CAT +FGMG+DKP VRFVIH  + +++ +YYQESGRAGRD L S C +
Sbjct:   299 QEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRL 358

Query:   165 LYQKKDFSRVVCMLRN------GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHF 218
              Y ++D   +  +L+N      G+G K    + A+ Q +K+ ++CE +  CR +   + F
Sbjct:   359 YYGREDVRSIRFLLQNDAHRARGRGDKELLTERAIKQFEKITEFCE-RTTCRHKLFSDFF 417

Query:   219 GESFDRKACKNGSNPCDNC 237
             G+      C   S  CD C
Sbjct:   418 GDP--TPDC---SGQCDVC 431


>TIGR_CMR|SO_4241 [details] [associations]
            symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
            species:211586 "Shewanella oneidensis MR-1" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
            RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
            GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
            ProtClustDB:CLSK907564 Uniprot:Q8E9M8
        Length = 607

 Score = 367 (134.2 bits), Expect = 3.1e-33, P = 3.1e-33
 Identities = 95/239 (39%), Positives = 131/239 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             MALTATA Q+ R +I + L I +   L +SFDRPN++Y V  K   A  Q+ Q +  +  
Sbjct:   178 MALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEKLNAA-NQLRQFLLQQ-N 234

Query:    61 DQCGIIYCLSKNECVEVSNFLN-QKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
                GIIYC S+    EV+  L  Q    K   YHAG+   +R  VQ  +    + IV AT
Sbjct:   235 GSSGIIYCSSRRRVDEVAERLTLQGFHAKA--YHAGMTPEERGEVQDSFLKDQIDIVVAT 292

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179
             +AFGMGI+K +VRFV+H  + KSIE+YYQE+GRAGRD L +   +L+   D  RV  ++ 
Sbjct:   293 VAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIE 352

Query:   180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
               +    +  +    +   M  + E +  CRRQ LL +F ES   + C N    CD CL
Sbjct:   353 QSEPGPQQ--QVEFHKLNTMAAFAEAQT-CRRQVLLHYFDESA-LEPCGN----CDICL 403


>UNIPROTKB|Q6P4G0 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
            IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
            ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
            STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
            ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
        Length = 964

 Score = 372 (136.0 bits), Expect = 3.9e-33, P = 3.9e-33
 Identities = 93/255 (36%), Positives = 138/255 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHAL-VLETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   + + +T   R NL Y+V          G  K+  LK
Sbjct:   162 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 221

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKW 108
              +GQ   D+    CGI+YC ++  C +++  +   C+ +    YHAGL A +R +VQ  W
Sbjct:   222 ALGQEA-DKGLSGCGIVYCRTREACEQLA--IELSCRGVNAKAYHAGLKASERTLVQNDW 278

Query:   109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168
                 V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y +
Sbjct:   279 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 338

Query:   169 KDFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
              D  +V       V  L+  +G K+    T MA    +  +CE+   CR   + ++FG++
Sbjct:   339 NDRDQVSFLIRKEVAKLQEKRGNKASDKATIMA-FDALVTFCEELG-CRHAAIAKYFGDA 396

Query:   222 FDRKACKNGSNPCDN 236
                 AC  G + C N
Sbjct:   397 LP--ACAKGCDHCQN 409


>UNIPROTKB|O94762 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
            evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
            "cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
            evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
            [GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
            GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
            EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
            EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
            RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
            UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
            DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
            PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
            Ensembl:ENST00000317905 Ensembl:ENST00000340830
            Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
            KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
            CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
            HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
            HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
            OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
            NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
            Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
        Length = 991

 Score = 372 (136.0 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 93/255 (36%), Positives = 138/255 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHAL-VLETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   + + +T   R NL Y+V          G  K+  LK
Sbjct:   189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKW 108
              +GQ   D+    CGI+YC ++  C +++  +   C+ +    YHAGL A +R +VQ  W
Sbjct:   249 ALGQEA-DKGLSGCGIVYCRTREACEQLA--IELSCRGVNAKAYHAGLKASERTLVQNDW 305

Query:   109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168
                 V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y +
Sbjct:   306 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 365

Query:   169 KDFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
              D  +V       V  L+  +G K+    T MA    +  +CE+   CR   + ++FG++
Sbjct:   366 NDRDQVSFLIRKEVAKLQEKRGNKASDKATIMA-FDALVTFCEELG-CRHAAIAKYFGDA 423

Query:   222 FDRKACKNGSNPCDN 236
                 AC  G + C N
Sbjct:   424 LP--ACAKGCDHCQN 436


>UNIPROTKB|O93530 [details] [associations]
            symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
            species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
            evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
            [GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
            "manganese ion binding" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
            PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
            SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
            EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
            ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
            Xenbase:XB-GENE-992879 Uniprot:O93530
        Length = 1436

 Score = 374 (136.7 bits), Expect = 4.8e-33, P = 4.8e-33
 Identities = 102/253 (40%), Positives = 141/253 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQ-LIKDRF 59
             +ALTATA+ S+R DI K+L + +  V  TSFDRPNL  +V  K+      + Q LIK + 
Sbjct:   641 VALTATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQ 700

Query:    60 K-----DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ 114
                   +   I+YC ++    +V+  L  K  I    YHAG+  +QR  V  ++   ++ 
Sbjct:   701 GSGWEFEGATIVYCPTRKTSEQVTAELI-KLGIACGTYHAGMGIKQRREVHHRFMRDEIH 759

Query:   115 IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD--FS 172
              V AT+AFGMGI+KPD+R VIH    K +ESYYQE GRAGRD LPS C  L+ + D  F+
Sbjct:   760 CVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFN 819

Query:   173 RVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--G 230
             R +      +GF+   +K  M    KM++Y      CRR+ +L HF +   RKA     G
Sbjct:   820 RHMLGEIPNKGFRE--YKLKMLT--KMEKYLNSST-CRRKIILSHFEDKQLRKASSGIMG 874

Query:   231 SNPC-DNCLKTSL 242
             +  C DNC KT L
Sbjct:   875 TEKCCDNC-KTRL 886


>UNIPROTKB|F1RX70 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
        Length = 1409

 Score = 373 (136.4 bits), Expect = 6.0e-33, P = 6.0e-33
 Identities = 98/245 (40%), Positives = 133/245 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTAT T S+R DI++ L++    +  T FDRPNL  EV  K+ + L+ + Q +  +  
Sbjct:   668 VALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTS 727

Query:    61 DQC---G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                   G  IIYC S+    +V+  L +K K+    YHAGL+   R  V  K+   ++Q 
Sbjct:   728 SAWEFEGPTIIYCPSRKMTEQVTAEL-KKLKLACETYHAGLSIHLRKQVHHKFMRDEIQC 786

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K IESYYQE GRAGRD L S C +L+   D +   
Sbjct:   787 VIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNR 846

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
              +L          +K  M    KM++Y    + CRRQ +L HF +   RKA     G+  
Sbjct:   847 HLLSEICNENFRLYKLKMMA--KMEKYLHS-SRCRRQIILSHFEDKQLRKASLGIMGTEK 903

Query:   234 C-DNC 237
             C DNC
Sbjct:   904 CCDNC 908


>UNIPROTKB|I3LC91 [details] [associations]
            symbol:WRN "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0042981 "regulation of apoptotic process"
            evidence=IEA] [GO:0042803 "protein homodimerization activity"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
            "MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
            nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
            processing" evidence=IEA] [GO:0030145 "manganese ion binding"
            evidence=IEA] [GO:0010259 "multicellular organismal aging"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0009267 "cellular response to starvation" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=IEA] [GO:0006284
            "base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
            evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
            DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
            GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
            GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
            GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
            Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
        Length = 1507

 Score = 373 (136.4 bits), Expect = 6.6e-33, P = 6.6e-33
 Identities = 98/245 (40%), Positives = 133/245 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTAT T S+R DI++ L++    +  T FDRPNL  EV  K+ + L+ + Q +  +  
Sbjct:   767 VALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTS 826

Query:    61 DQC---G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                   G  IIYC S+    +V+  L +K K+    YHAGL+   R  V  K+   ++Q 
Sbjct:   827 SAWEFEGPTIIYCPSRKMTEQVTAEL-KKLKLACETYHAGLSIHLRKQVHHKFMRDEIQC 885

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K IESYYQE GRAGRD L S C +L+   D +   
Sbjct:   886 VIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNR 945

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
              +L          +K  M    KM++Y    + CRRQ +L HF +   RKA     G+  
Sbjct:   946 HLLSEICNENFRLYKLKMMA--KMEKYLHS-SRCRRQIILSHFEDKQLRKASLGIMGTEK 1002

Query:   234 C-DNC 237
             C DNC
Sbjct:  1003 CCDNC 1007


>UNIPROTKB|F1RMJ2 [details] [associations]
            symbol:BLM "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
            Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
        Length = 511

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 81/164 (49%), Positives = 99/164 (60%)

Query:    83 QKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCATIAFGMGIDKPDVRFVIHNTLSK 141
             QK  +  + YHAGL+   R  VQ KW   D  Q++CATIAFGMGIDKPDVRFVIH +L K
Sbjct:     6 QKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPK 65

Query:   142 SIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV---VCMLRNGQGFKSEAFKTAMAQAKK 198
             S+E YYQESGRAGRD   S C++ Y   D +R+   + M ++G     E   T       
Sbjct:    66 SVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHHTKE---THFNNLYS 122

Query:   199 MQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-PCDNCLKT 240
             M  YCE  AECRR  LL +FGE+ F+   CK   +  CDNC KT
Sbjct:   123 MVHYCENIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNCCKT 166


>UNIPROTKB|O34748 [details] [associations]
            symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
            InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
            InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
            SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
            HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
            ProteinModelPortal:O34748 SMR:O34748
            EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
            PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
            ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
            TIGRFAMs:TIGR01389 Uniprot:O34748
        Length = 591

 Score = 361 (132.1 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 87/241 (36%), Positives = 137/241 (56%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI-GKSKEALKQIGQLIKDRF 59
             MALTATAT  V  DI K L I     + T F R NL ++V+ G++K+    I + +++  
Sbjct:   172 MALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRF--IDEYVQNN- 228

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
             + + GI+Y  ++ E   +   L +  +++   YH GLA   R   Q+++   ++Q++ AT
Sbjct:   229 RHEAGIVYTATRKEADRIYERLKRN-QVRAGRYHGGLADDVRKEQQERFLNDELQVMVAT 287

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179
              AFGMGIDK ++RFV+H  + K +ESYYQE+GRAGRD L S C++L+  +D   +V    
Sbjct:   288 SAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDI--MVQRFL 345

Query:   180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLK 239
               Q    E  K  + + ++M  YC  + +C ++ +L +FGE  +  AC  G   C NC  
Sbjct:   346 IEQSEHEEKQKQDLKKLRQMVDYCHTE-DCLQRFILMYFGEK-EPDAC--GQ--CGNCTD 399

Query:   240 T 240
             T
Sbjct:   400 T 400


>UNIPROTKB|F1PAG8 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
            Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
            Uniprot:F1PAG8
        Length = 989

 Score = 366 (133.9 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/255 (35%), Positives = 137/255 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   +   +T   R NL Y+V          G  ++  LK
Sbjct:   185 IALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109
              +GQ         CGI+YC ++  C +++  L+ +  +    YHAGL A +R +VQ +W 
Sbjct:   245 ALGQKADKGLLSGCGIVYCRTREACEQLATELSYR-GVNAKAYHAGLKASERTLVQNEWM 303

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
                V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y + 
Sbjct:   304 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 363

Query:   170 DFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESF 222
             D  +V       V  L+  +G K+   K A+     +  +CE+   CR   + ++FG++ 
Sbjct:   364 DRDQVSFLIRKEVAKLQEKRGNKASD-KAAILAFDALVTFCEELG-CRHAAIAKYFGDA- 420

Query:   223 DRKACKNGSNPCDNC 237
                AC  G   CD+C
Sbjct:   421 -PPACTKG---CDHC 431


>TIGR_CMR|BA_2818 [details] [associations]
            symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
            "DNA unwinding involved in replication" evidence=ISS] [GO:0006281
            "DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
            evidence=ISS] [GO:0009378 "four-way junction helicase activity"
            evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
            Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
            GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
            RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
            DNASU:1085972 EnsemblBacteria:EBBACT00000011651
            EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
            GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
            KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
            BioCyc:BANT260799:GJAJ-2691-MONOMER
            BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
        Length = 705

 Score = 359 (131.4 bits), Expect = 4.4e-32, P = 4.4e-32
 Identities = 87/236 (36%), Positives = 130/236 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATAT  VR DI   L I     + T+F+R NL + VI K ++    +   I+   K
Sbjct:   171 LALTATATPQVRDDICNTLGINQENTIMTTFERENLSFSVI-KGQDRNAYLADYIRQNQK 229

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             +  GIIY  ++    ++   L  K  +    YHAG++   R   Q+ +   +V ++ AT 
Sbjct:   230 ES-GIIYAATRKVVDQLYEDL-MKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATS 287

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
             AFGMGIDK ++R+VIH  L K++ESYYQE+GRAGRD L S CI+LY  +D  +V   L +
Sbjct:   288 AFGMGIDKSNIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDV-QVQRFLID 346

Query:   181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
              Q      F   + + + M  YC  + +C +  +L++FGE   ++ C    N  DN
Sbjct:   347 -QSIGESRFSNELEKLQNMTDYCHTE-QCLQSFILQYFGEE-PKEDCGRCGNCTDN 399


>UNIPROTKB|F1NAR0 [details] [associations]
            symbol:F1NAR0 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
            "magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
            binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
            [GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
            repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IEA] [GO:0009378 "four-way junction helicase activity"
            evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
            [GO:0010259 "multicellular organismal aging" evidence=IEA]
            [GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
            "replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
            to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
            complex" evidence=IEA] [GO:0032403 "protein complex binding"
            evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
            [GO:0042803 "protein homodimerization activity" evidence=IEA]
            [GO:0042981 "regulation of apoptotic process" evidence=IEA]
            [GO:0051345 "positive regulation of hydrolase activity"
            evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
            SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
            GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
            GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
            GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
            Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
        Length = 1367

 Score = 362 (132.5 bits), Expect = 8.5e-32, P = 8.5e-32
 Identities = 96/251 (38%), Positives = 134/251 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +ALTATA+ S+R DI+  L + +  V  TSFDRPNL  EV  +S   L+ + Q +  +  
Sbjct:   611 VALTATASPSIREDIVNCLNLKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQFLTRKGS 670

Query:    61 DQC----G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ 114
                    G  IIYC S+    +V   LN K  +    YHAG+  ++R     ++   ++Q
Sbjct:   671 SSTYEFEGPTIIYCPSRKATEQVMFELN-KLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQ 729

Query:   115 IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV 174
              V AT+AFGMGI+K D+R VIH    K +ESYYQE GRAGRD LP+ C VL+   D    
Sbjct:   730 CVVATVAFGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLN 789

Query:   175 VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSN 232
               +L      K   +K  M +  KM++Y    + CR + +L HF +   RK      G+ 
Sbjct:   790 RRLLNEIHNEKFRLYKLKMLE--KMEKYLSSNS-CRSRIILSHFEDKQLRKVSSGIMGTE 846

Query:   233 PC-DNC-LKTS 241
              C DNC  +TS
Sbjct:   847 ECCDNCRCRTS 857


>UNIPROTKB|F1NT69 [details] [associations]
            symbol:F1NT69 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
            ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
            ArrayExpress:F1NT69 Uniprot:F1NT69
        Length = 451

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 90/255 (35%), Positives = 136/255 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEVIGKSKEALKQIGQLIKD-- 57
             +ALTATAT+ V+ DI+ AL++   L   +T   R NL Y+V  + KE L      +KD  
Sbjct:   194 VALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDV--QFKELLTDPYANLKDFC 251

Query:    58 ----RFKDQ------CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKK 107
                   K+       CGI+YC  ++ C +++  L+ +  +K   YHAGL A  R  VQ +
Sbjct:   252 LKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYR-GVKAKAYHAGLKAADRTSVQNE 310

Query:   108 WHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ 167
             W    + ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y 
Sbjct:   311 WMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYS 370

Query:   168 KKDFSRVVCMLRNG-------QGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGE 220
             + D  +V  +++         +G   E+ K+ M     +  +CE+   CR   + ++FG+
Sbjct:   371 RNDRDQVSFLIKKELSKIQEKKGTLKESDKSVMTAFDAIVSFCEELG-CRHAAIAKYFGD 429

Query:   221 SFD--RKACKNGSNP 233
                   K C    NP
Sbjct:   430 VTPPCNKCCDYCKNP 444


>UNIPROTKB|Q14191 [details] [associations]
            symbol:WRN "Werner syndrome ATP-dependent helicase"
            species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
            "regulation of growth rate" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0031297 "replication fork processing" evidence=IMP;IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
            maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
            [GO:0010259 "multicellular organismal aging" evidence=IMP]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
            [GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
            [GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=IDA] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] [GO:0032403 "protein
            complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
            in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
            evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
            [GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
            DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
            activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0009378 "four-way junction helicase activity"
            evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
            [GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
            "positive regulation of hydrolase activity" evidence=IDA]
            [GO:0006979 "response to oxidative stress" evidence=IDA]
            [GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
            binding" evidence=IDA] [GO:0030145 "manganese ion binding"
            evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
            radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
            evidence=IDA] [GO:0009267 "cellular response to starvation"
            evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
            evidence=IDA] [GO:0042981 "regulation of apoptotic process"
            evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
            catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
            evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
            GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
            GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
            GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
            MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
            Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
            GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
            GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
            EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
            EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
            UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
            PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
            PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
            PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
            ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
            MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
            PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
            KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
            H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
            MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
            OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
            EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
            CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
            Uniprot:Q14191
        Length = 1432

 Score = 360 (131.8 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 95/245 (38%), Positives = 135/245 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQ-LIKD-- 57
             +ALTATA+ S+R DI++ L + +  +  T FDRPNL  EV  K+   L+ +   L+K   
Sbjct:   700 VALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSS 759

Query:    58 --RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                F+    IIYC S+    +V+  L +K  +    YHAG++   R  +  ++   ++Q 
Sbjct:   760 HWEFEGPT-IIYCPSRKMTQQVTGEL-RKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQC 817

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C VL+   D +   
Sbjct:   818 VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNR 877

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
              +L   +  K   +K  M    KM++Y    + CRRQ +L HF +   +KA     G+  
Sbjct:   878 HLLTEIRNEKFRLYKLKMMA--KMEKYLHS-SRCRRQIILSHFEDKQVQKASLGIMGTEK 934

Query:   234 C-DNC 237
             C DNC
Sbjct:   935 CCDNC 939


>RGD|1310823 [details] [associations]
            symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
            norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
            holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
            evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
            GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
            Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
            RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
            GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
        Length = 973

 Score = 353 (129.3 bits), Expect = 4.3e-31, P = 4.3e-31
 Identities = 88/254 (34%), Positives = 133/254 (52%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   +   +T   R NL Y+V          G  ++  LK
Sbjct:   189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLK 248

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109
              +GQ   +     CGI+YC ++  C +++  L+ +  +    YHAGL A +R  VQ +W 
Sbjct:   249 ALGQKADNGSSSGCGIVYCRTREACEQLAIELSSR-GVNAKAYHAGLKASERTQVQNEWM 307

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
                V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y + 
Sbjct:   308 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 367

Query:   170 DFSRVVCMLRNGQGFKSE------AFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFD 223
             D  +V  ++R       E      + K  +     +  +CE+   CR   + ++FG++  
Sbjct:   368 DRDQVSFLIRKELAKLQEKRGNKPSDKATLLAFDALVTFCEEVG-CRHAAIAKYFGDA-- 424

Query:   224 RKACKNGSNPCDNC 237
               AC  G   CD C
Sbjct:   425 PPACAKG---CDCC 435


>UNIPROTKB|I3LFW3 [details] [associations]
            symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
            "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
            GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
            Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
        Length = 432

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEV---------IGKSKE-ALK 49
             +ALTATAT  V+ D+  AL +   +   +T   R NL Y+V          G  ++  LK
Sbjct:   185 VALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244

Query:    50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109
              +GQ   D+    CGI+YC ++  C +++  L+ +  +    YHAGL A +R +VQ +W 
Sbjct:   245 ALGQKA-DKGLSGCGIVYCRTREACEQLAIELSAR-GVNAKAYHAGLKAAERTLVQNEWM 302

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
              G V ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y + 
Sbjct:   303 EGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRN 362

Query:   170 DFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQ 205
             D  +V       V  L+  +G K+   K A++    +  +CE+
Sbjct:   363 DRDQVSFLIRKEVAKLQEKRGNKASD-KAALSAFDALVAFCEE 404


>UNIPROTKB|F1NWK5 [details] [associations]
            symbol:F1NWK5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
            evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
            OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
            Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
        Length = 1023

 Score = 347 (127.2 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 90/255 (35%), Positives = 136/255 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALV-LETSFDRPNLKYEVIGKSKEALKQIGQLIKD-- 57
             +ALTATAT+ V+ DI+ AL++   L   +T   R NL Y+V  + KE L      +KD  
Sbjct:   194 VALTATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDV--QFKELLTDPYANLKDFC 251

Query:    58 ----RFKDQ------CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKK 107
                   K+       CGI+YC  ++ C +++  L+ +  +K   YHAGL A  R  VQ +
Sbjct:   252 LKALEVKNTTGVYSGCGIVYCRMRDVCDQLAIELSYR-GVKAKAYHAGLKAADRTSVQNE 310

Query:   108 WHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ 167
             W    + ++ ATI+FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y 
Sbjct:   311 WMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYS 370

Query:   168 KKDFSRVVCMLRNG-------QGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGE 220
             + D  +V  +++         +G   E+ K+ M     +  +CE+   CR   + ++FG+
Sbjct:   371 RNDRDQVSFLIKKELSKIQEKKGTLKESDKSVMTAFDAIVSFCEELG-CRHAAIAKYFGD 429

Query:   221 SFD--RKACKNGSNP 233
                   K C    NP
Sbjct:   430 VTPPCNKCCDYCKNP 444


>MGI|MGI:109635 [details] [associations]
            symbol:Wrn "Werner syndrome homolog (human)" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
            "Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
            evidence=ISO] [GO:0000723 "telomere maintenance"
            evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
            repair" evidence=ISO] [GO:0001302 "replicative cell aging"
            evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
            activity" evidence=ISO] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
            [GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
            "DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
            [GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
            stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
            response to starvation" evidence=ISO] [GO:0009378 "four-way
            junction helicase activity" evidence=ISO] [GO:0010225 "response to
            UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
            evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
            ion binding" evidence=ISO] [GO:0031297 "replication fork
            processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
            transport" evidence=ISO] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
            [GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
            "protein homodimerization activity" evidence=ISO] [GO:0042981
            "regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
            DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
            metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0051345 "positive regulation of hydrolase
            activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
            evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
            SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
            GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
            GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
            GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
            HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
            OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
            EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
            EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
            RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
            PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
            SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
            PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
            Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
            InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
            Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
            GermOnline:ENSMUSG00000031583 Uniprot:O09053
        Length = 1401

 Score = 345 (126.5 bits), Expect = 5.7e-30, P = 5.7e-30
 Identities = 91/245 (37%), Positives = 132/245 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +AL+ATA+ S+R DI+  L +    +  T FDRPNL  EV  K+   L+ +   +  +  
Sbjct:   664 IALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKAS 723

Query:    61 DQC---G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                   G  IIYC S+    +V+  L  K  +    YHAG+   +R  V  ++   ++Q 
Sbjct:   724 SAWEFEGPTIIYCPSRKMTEQVTAELG-KLNLACRTYHAGMKISERKDVHHRFLRDEIQC 782

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V AT+AFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C +L+   DF+   
Sbjct:   783 VVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSR 842

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
              +L      K   +K  M    KM++Y    ++CRR+ +L HF +   +KA  +  G+  
Sbjct:   843 NLLIEIHDEKFRLYKLKMMV--KMEKYLHS-SQCRRRIILSHFEDKCLQKASLDIMGTEK 899

Query:   234 C-DNC 237
             C DNC
Sbjct:   900 CCDNC 904


>RGD|1564788 [details] [associations]
            symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
            "Rattus norvegicus" [GO:0000287 "magnesium ion binding"
            evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
            "telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
            involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
            aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
            "DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
            activity" evidence=ISO] [GO:0004527 "exonuclease activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
            process" evidence=ISO] [GO:0006260 "DNA replication"
            evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006310 "DNA
            recombination" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
            evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
            "3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
            "cellular response to starvation" evidence=ISO] [GO:0009378
            "four-way junction helicase activity" evidence=ISO] [GO:0010225
            "response to UV-C" evidence=ISO] [GO:0010259 "multicellular
            organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
            [GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
            "nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
            "protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
            unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
            evidence=ISO] [GO:0042803 "protein homodimerization activity"
            evidence=ISO] [GO:0042981 "regulation of apoptotic process"
            evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
            evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=IEA] [GO:0051345 "positive regulation of
            hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
            binding" evidence=ISO] [GO:0071480 "cellular response to gamma
            radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
            evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
            SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
            GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
            GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
            SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
            GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
            GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
            GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
            Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
        Length = 1448

 Score = 343 (125.8 bits), Expect = 9.8e-30, P = 9.8e-30
 Identities = 92/245 (37%), Positives = 129/245 (52%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
             +AL+ATA+ S+R DI++ L +    +  T FDRPNL  EV  K+   L+ +   +  +  
Sbjct:   712 IALSATASSSIREDIIRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTS 771

Query:    61 DQC---G--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                   G  IIYC S+    +V+  L  K  +    YHAG+   +R  +  ++   ++Q 
Sbjct:   772 SAWEFEGPTIIYCPSRKVTEQVTVELG-KLNVACQAYHAGMKISERKDIHHRFLRDEIQC 830

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V ATIAFGMGI+K D+R VIH    K +ESYYQE GRAGRD L S C +L+   DF+   
Sbjct:   831 VVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTR 890

Query:   176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKA--CKNGSNP 233
               L      K    K  M    KM++Y    + CRRQ +L HF +   +KA     G+  
Sbjct:   891 NRLIEIHNEKFRLHKLKMMV--KMEKYLHS-SRCRRQIILSHFEDKRLQKASLAVMGTEK 947

Query:   234 C-DNC 237
             C DNC
Sbjct:   948 CCDNC 952


>WB|WBGene00004322 [details] [associations]
            symbol:rcq-5 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0008340 "determination of adult lifespan" evidence=IMP]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
            ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
            EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
            UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
            InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
        Length = 809

 Score = 335 (123.0 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 96/270 (35%), Positives = 142/270 (52%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYE-----VIGK--SKEALKQIGQ 53
             +ALTATA    + DI   L++ +    ++   R NL Y+      I K  + +A      
Sbjct:   338 VALTATANAKAQDDIAFQLKLRNPESFKSGTYRDNLFYDNHMASFITKCLTVDAKTSSSN 397

Query:    54 LIK----DRFKDQ-----CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVV 104
             L K    +R +++       I+YC S+NEC +V+  L +   I  + YHAGL  + R  V
Sbjct:   398 LTKHEKAERSQNKKTFTGSAIVYCRSRNECGQVAKML-EIAGIPAMAYHAGLGKKDRNEV 456

Query:   105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV 164
             Q+KW   ++ +V AT+AFGMGIDKPDVR VIH + S+++  YYQE+GRAGRD   S C +
Sbjct:   457 QEKWMNNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRI 516

Query:   165 LYQKKD-----F--SRVVCMLR------NGQGFKSEA-FKTAMAQAKKMQQYCEQKAECR 210
              Y K+D     F  S  +  LR      N +G K+E   K+      KM +YCE  A CR
Sbjct:   517 YYSKQDKNALNFLVSGELAKLREKAKKNNAEGEKAEMQIKSIQTGLAKMLEYCES-ARCR 575

Query:   211 RQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
               ++   F ++ + + CK   + C +  KT
Sbjct:   576 HVSIASFFDDT-ECRPCKTNCDYCRDPTKT 604


>TAIR|locus:2180255 [details] [associations]
            symbol:RECQSIM "RECQ helicase SIM" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
            [GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
            helicase activity" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
            InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
            InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
            HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
            IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
            ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
            EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
            TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
            OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
            Genevestigator:Q9FT69 Uniprot:Q9FT69
        Length = 858

 Score = 268 (99.4 bits), Expect = 7.7e-29, Sum P(2) = 7.7e-29
 Identities = 70/185 (37%), Positives = 101/185 (54%)

Query:    57 DRFKDQCG--IIYCLSKNECVEVSNFLNQKCKI--KTVYYHAGLAARQRVVVQKKWHTGD 112
             ++ KD  G  IIY  ++ E V ++ +L   C +  K   Y+A L  +    V + +H   
Sbjct:   491 EKQKDLEGLTIIYVPTRKESVNIAKYL---CGVGLKAAAYNASLPKKHLRQVHQDFHDNK 547

Query:   113 VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172
             +Q+V ATIAFGMGIDK +VR +IH    +S+E+YYQE+GRAGRD   + C VLY   D S
Sbjct:   548 LQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAEC-VLYA--DLS 604

Query:   173 RVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSN 232
             R   +L + +    E  + A        +Y    ++CR + L+E+FGE F  K C    N
Sbjct:   605 RAPTLLPSRRS--KEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKC----N 658

Query:   233 PCDNC 237
              CD C
Sbjct:   659 SCDVC 663

 Score = 90 (36.7 bits), Expect = 7.7e-29, Sum P(2) = 7.7e-29
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query:     1 MALTATATQSVRLDILKALRIP-HALVLETSFDRPNLKYEV 40
             MALTATAT +V+ DIL++L +     ++ TSF RPNL++ V
Sbjct:   329 MALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSV 369


>TIGR_CMR|BA_1505 [details] [associations]
            symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
            species:198094 "Bacillus anthracis str. Ames" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
            RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
            EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
            EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
            GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
            ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
            BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
        Length = 509

 Score = 275 (101.9 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 69/206 (33%), Positives = 112/206 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEV-----IGKSKEALKQIGQLI 55
             +ALTATAT+ V  DI  +L +  A     S DRPN+  +V     I + KEAL +  Q++
Sbjct:   167 LALTATATKGVLQDIADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLE--QVM 224

Query:    56 KDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
                +    GI+YC S+     ++ +L  K      +YH G+   +R+++Q+++    +Q+
Sbjct:   225 ---YLQGPGIVYCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQL 281

Query:   116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             V  T AFGMG++K + R++IH     +I SY QE GRAGRD  PS+ I+L    D    +
Sbjct:   282 VICTSAFGMGVNKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDHDLPI 341

Query:   176 CMLRNGQGFKSEA-FKTAMAQAKKMQ 200
              ++ +    KS+  F  ++ Q +  Q
Sbjct:   342 SIIEDELPSKSQIQFLFSLLQERMFQ 367

 Score = 50 (22.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query:   194 AQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
             ++ + M+ + + K  CRR+ +L+ FG   +++      N CD C
Sbjct:   435 SELENMKSWIQVKG-CRREYVLQQFGYRKEQELM----NCCDYC 473


>ASPGD|ASPL0000072255 [details] [associations]
            symbol:recQ species:162425 "Emericella nidulans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
            EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
        Length = 541

 Score = 204 (76.9 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
 Identities = 52/131 (39%), Positives = 72/131 (54%)

Query:    64 GIIYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQ-------- 114
             GI+Y  ++     +++ L Q   +I+ V YHAGL A  RV VQ +W     Q        
Sbjct:   256 GIVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGA 315

Query:   115 ------IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168
                   I+ AT AFGMGID P+VRFV+H +  ++ E + QESGRAGRD   +  IV Y  
Sbjct:   316 KPVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSL 375

Query:   169 KDFSRVVCMLR 179
             ++  RV+  LR
Sbjct:   376 QERERVLNHLR 386

 Score = 83 (34.3 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query:     2 ALTATATQSVRLDILKALRI-PHAL-VLETSFDRPNLKYEV 40
             ALTATAT  VR DI+  L + P  L +  T   RPN+ YE+
Sbjct:   167 ALTATATSQVRTDIINILGLNPRRLKIFSTPSARPNIHYEI 207

 Score = 59 (25.8 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query:   197 KKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             +K+ +YCE    CR + + E FG   D +  K GS
Sbjct:   422 EKVVRYCETTTRCRHELIKEFFG---DLELVKMGS 453


>UNIPROTKB|Q47WD5 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] InterPro:IPR001650 InterPro:IPR002464
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 302 (111.4 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 69/166 (41%), Positives = 98/166 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSK-EALKQIGQLIKDRF 59
             + LTATAT+ V+ D+     I    +++T F R NL   V+  ++    KQ+ Q+I  + 
Sbjct:   178 LLLTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQ- 236

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
                 GI+Y   ++    V+ +L Q+  I    YHAG  +  R  +Q+ +  G +Q++ AT
Sbjct:   237 -QGAGIVYVTLQHSAETVAQYLKQQ-GINACAYHAGFDSDTRSQIQQDFMAGKIQVIVAT 294

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
             IAFGMGIDK ++RFVIH  L KSIE+Y QE GRAGRD LPS C  L
Sbjct:   295 IAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTL 340


>TIGR_CMR|CPS_4237 [details] [associations]
            symbol:CPS_4237 "RecQ domain protein" species:167879
            "Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
            GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
            ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
            KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
            ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
            Uniprot:Q47WD5
        Length = 690

 Score = 302 (111.4 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 69/166 (41%), Positives = 98/166 (59%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSK-EALKQIGQLIKDRF 59
             + LTATAT+ V+ D+     I    +++T F R NL   V+  ++    KQ+ Q+I  + 
Sbjct:   178 LLLTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQ- 236

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
                 GI+Y   ++    V+ +L Q+  I    YHAG  +  R  +Q+ +  G +Q++ AT
Sbjct:   237 -QGAGIVYVTLQHSAETVAQYLKQQ-GINACAYHAGFDSDTRSQIQQDFMAGKIQVIVAT 294

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
             IAFGMGIDK ++RFVIH  L KSIE+Y QE GRAGRD LPS C  L
Sbjct:   295 IAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTL 340


>TIGR_CMR|SPO_0107 [details] [associations]
            symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
            recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
            SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
            GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
            OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
            GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
            ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
        Length = 679

 Score = 292 (107.8 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 79/223 (35%), Positives = 112/223 (50%)

Query:     2 ALTATATQSVRLDILKAL---RIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR 58
             A TATA    + +I+  L     P + +    FDRPN+      K     +QI      R
Sbjct:   169 AFTATADAETQAEIVAKLFDGEEPRSFL--RGFDRPNIHLAFAAKDSPR-RQILDFAGAR 225

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
              + Q GI+YC ++ +   ++  L +       +YH G+ A  R +V+ ++   D  IV A
Sbjct:   226 -RGQSGIVYCGTRAKTETLAQALREDGH-SACHYHGGMEAEDRRIVETRFAREDGLIVVA 283

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             T+AFGMGIDKPD+R+V H  L KSIE+YYQE GRAGRD  P+  + L+   D       +
Sbjct:   284 TVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDDIRLRRSQI 343

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
               G     E      A+   +    E    CRRQTLL +FGE+
Sbjct:   344 DEGLA-PPERRAADHARLNALLGLAEAMT-CRRQTLLGYFGET 384


>UNIPROTKB|Q8EEK1 [details] [associations]
            symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
            GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
            OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
            ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
            PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 271 (100.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 71/168 (42%), Positives = 97/168 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKE-ALKQIGQLIKDRF 59
             + LTATAT+ V+ D+     I    +++T F R NL   V+  + E  L+ + Q ++  F
Sbjct:   179 LLLTATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQS-F 237

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVY--YHAGLAARQRVVVQKKWHTGDVQIVC 117
              D  GI+Y   ++   EV++   Q C +  V   YHAG    +R  +Q  +  G  QIV 
Sbjct:   238 -DGAGIVYVTLQHTAEEVAS---QLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVV 293

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
             ATIAFGMGIDK ++RFVIH  L KSIE+Y QE GRAGRD   S C+ L
Sbjct:   294 ATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTL 341


>TIGR_CMR|SO_2380 [details] [associations]
            symbol:SO_2380 "RecQ domain protein" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
            InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
            HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
            ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
            GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
        Length = 654

 Score = 271 (100.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 71/168 (42%), Positives = 97/168 (57%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKE-ALKQIGQLIKDRF 59
             + LTATAT+ V+ D+     I    +++T F R NL   V+  + E  L+ + Q ++  F
Sbjct:   179 LLLTATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQS-F 237

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVY--YHAGLAARQRVVVQKKWHTGDVQIVC 117
              D  GI+Y   ++   EV++   Q C +  V   YHAG    +R  +Q  +  G  QIV 
Sbjct:   238 -DGAGIVYVTLQHTAEEVAS---QLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVV 293

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
             ATIAFGMGIDK ++RFVIH  L KSIE+Y QE GRAGRD   S C+ L
Sbjct:   294 ATIAFGMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTL 341


>UNIPROTKB|H9KZS5 [details] [associations]
            symbol:H9KZS5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=IEA] [GO:0043473 "pigmentation"
            evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
            cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
            evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
            Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
        Length = 252

 Score = 197 (74.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 38/71 (53%), Positives = 50/71 (70%)

Query:    92 YHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESG 151
             YHAGL A +R  VQ  +  G +++V AT+AFGMG+DK DVR V+H  + ++ ESY QE G
Sbjct:   175 YHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQEIG 234

Query:   152 RAGRDNLPSVC 162
             RAGRD  P+ C
Sbjct:   235 RAGRDGEPAWC 245

 Score = 69 (29.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 24/84 (28%), Positives = 38/84 (45%)

Query:     1 MALTATATQSVRLDILKALRIPH--ALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR 58
             +ALTATAT +   D+   L IP    + ++ +   PNL+  V  +       +  L  +R
Sbjct:    61 LALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDRDRALVNLLRSER 120

Query:    59 FKDQCGII-YCLSKNECVEVSNFL 81
             F     II YC  + +   V+  L
Sbjct:   121 FVALRSIIVYCTRREDTTRVAALL 144


>TAIR|locus:2029799 [details] [associations]
            symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
            to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
            evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
            [GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR001650
            InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
            SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
            GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
            GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
            HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
            IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
            ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
            EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
            KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
            OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
            Genevestigator:Q0WVW7 Uniprot:Q0WVW7
        Length = 911

 Score = 256 (95.2 bits), Expect = 9.3e-21, P = 9.3e-21
 Identities = 69/227 (30%), Positives = 114/227 (50%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR-F 59
             +A+TATAT      ++ +L IP   +++ S  R N +  V       +K +  L++   +
Sbjct:   424 LAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPY 483

Query:    60 KD-QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
             K+ +  I+YC  + E   +S +L     I    YH+GL A+ RV +Q+ + +  +++V A
Sbjct:   484 KEIRSIIVYCKFQYETDMISKYLRDN-NINAKGYHSGLPAKDRVRIQESFCSNKIRVVVA 542

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             T+AFGMG+DK DV  VIH ++  S+E Y QE GRAGRD   S C + Y    + ++   L
Sbjct:   543 TVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRS-L 601

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRK 225
              +  G    A    +      +    +K  C    ++E   + FD K
Sbjct:   602 AHSDGVDEYAVGKFLTHVFSTETKQHEKI-C--SLVIESASQKFDMK 645


>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase,
            putative" species:5833 "Plasmodium falciparum" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 251 (93.4 bits), Expect = 6.1e-20, P = 6.1e-20
 Identities = 69/223 (30%), Positives = 118/223 (52%)

Query:    21 IPHALVLETSFDRPNLKYEVIGKSK--EALKQIGQL-IKD------RFKDQ---CG---- 64
             + + L+  +S ++ NL Y V  K+     LK I  + +K+      +F D    C     
Sbjct:   228 LQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNST 287

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             +IY  SK EC  V +FL +K  +  + YHA L   Q+    +K+   ++QI+ AT+AFGM
Sbjct:   288 LIYVNSKKECESVYSFLKEK-GLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGM 346

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGF 184
             GIDKPD+R +IH   ++S+E+Y Q+ GRAGRDN  +  I+ +   D S++  ++   +  
Sbjct:   347 GIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILR-ENT 405

Query:   185 KSEAFKTAMAQAKKMQQYCEQKAE------CRRQTLLEHFGES 221
              +   +T   + + +     Q ++      CRR+ + E+F E+
Sbjct:   406 ANNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEA 448


>UNIPROTKB|Q8ILG5 [details] [associations]
            symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
            InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
            PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
            GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
            RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
            EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
            EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
            Uniprot:Q8ILG5
        Length = 1440

 Score = 251 (93.4 bits), Expect = 6.1e-20, P = 6.1e-20
 Identities = 69/223 (30%), Positives = 118/223 (52%)

Query:    21 IPHALVLETSFDRPNLKYEVIGKSK--EALKQIGQL-IKD------RFKDQ---CG---- 64
             + + L+  +S ++ NL Y V  K+     LK I  + +K+      +F D    C     
Sbjct:   228 LQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNST 287

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             +IY  SK EC  V +FL +K  +  + YHA L   Q+    +K+   ++QI+ AT+AFGM
Sbjct:   288 LIYVNSKKECESVYSFLKEK-GLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGM 346

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGF 184
             GIDKPD+R +IH   ++S+E+Y Q+ GRAGRDN  +  I+ +   D S++  ++   +  
Sbjct:   347 GIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILR-ENT 405

Query:   185 KSEAFKTAMAQAKKMQQYCEQKAE------CRRQTLLEHFGES 221
              +   +T   + + +     Q ++      CRR+ + E+F E+
Sbjct:   406 ANNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEA 448


>RGD|1307732 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
            norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
            [GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
            "skeletal system development" evidence=ISO] [GO:0003674
            "molecular_function" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
            replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
            regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
            "DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
            "pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
            of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
            "skeletal system morphogenesis" evidence=IEA;ISO]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
            ArrayExpress:D4A5W5 Uniprot:D4A5W5
        Length = 1216

 Score = 230 (86.0 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 66/180 (36%), Positives = 98/180 (54%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRP-NLKYEVIGKSKEALKQIGQLIK-DR 58
             + LTATAT+S   D+ + L I   L +  S   P NL   V    +++ + +  L++ DR
Sbjct:   660 LGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSV-SMDRDSDQALVTLLQGDR 718

Query:    59 FKDQCGII-YCLSKNECVEVSNFLNQKCKIKTVY---------------YHAGLAARQRV 102
             F+    II YC  + +   V+  L + C + TV                YHAG+ +++R 
Sbjct:   719 FRTLDSIIIYCARRKDTERVAALL-RTC-LSTVRDSKPRGRGPETLAEAYHAGMCSQERK 776

Query:   103 VVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
              VQ+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C
Sbjct:   777 RVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHC 836


>UNIPROTKB|A5D786 [details] [associations]
            symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
            [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
            HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
            InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
            EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
            UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
            GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
            Uniprot:A5D786
        Length = 1218

 Score = 229 (85.7 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 63/177 (35%), Positives = 95/177 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-DRF 59
             + LTATAT+S  LD+   L +    VL      P+  +  +   ++  + +  L++ DRF
Sbjct:   652 LGLTATATRSTALDVAWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRF 711

Query:    60 KDQCG-IIYCLSKNECVEVSNFLNQ-KCK----------IKTVY--YHAGLAARQRVVVQ 105
             +     IIYC  + +   V+  L    C           ++ V   YHAGL +R+R  VQ
Sbjct:   712 RALGSVIIYCHRREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQ 771

Query:   106 KKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
             + +  G +++V AT+AFGMG+D+PDVR V+H  L  S E+Y Q  GRAGRD  P+ C
Sbjct:   772 RAFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHC 828


>UNIPROTKB|F1RSP7 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
            GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
            TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
            EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
        Length = 1204

 Score = 228 (85.3 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 67/180 (37%), Positives = 96/180 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRP-NLKYEVIGKSKEALKQIGQLIK-DR 58
             + LTATAT+S  LD+ + L +    VL      P NL   V    ++  + +  L++ DR
Sbjct:   647 LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSV-SMDRDPDQALVTLLQSDR 705

Query:    59 F--KDQCGIIYCLSKNECVEVSNFLNQKCKIKT--------------VYYHAGLAARQRV 102
             F   D   IIYC  + +   V+  L + C  +T                YHAG+ +R+R 
Sbjct:   706 FCALDSI-IIYCNRREDTERVAALL-RTCLRETWALGPGGWAPEAVAEAYHAGMCSRERW 763

Query:   103 VVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
              VQ+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C
Sbjct:   764 RVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHC 823


>UNIPROTKB|K7GSZ9 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
            Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
        Length = 1209

 Score = 228 (85.3 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 67/180 (37%), Positives = 96/180 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRP-NLKYEVIGKSKEALKQIGQLIK-DR 58
             + LTATAT+S  LD+ + L +    VL      P NL   V    ++  + +  L++ DR
Sbjct:   652 LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSV-SMDRDPDQALVTLLQSDR 710

Query:    59 F--KDQCGIIYCLSKNECVEVSNFLNQKCKIKT--------------VYYHAGLAARQRV 102
             F   D   IIYC  + +   V+  L + C  +T                YHAG+ +R+R 
Sbjct:   711 FCALDSI-IIYCNRREDTERVAALL-RTCLRETWALGPGGWAPEAVAEAYHAGMCSRERW 768

Query:   103 VVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
              VQ+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C
Sbjct:   769 RVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHC 828


>UNIPROTKB|F1RV44 [details] [associations]
            symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
            [GO:0045875 "negative regulation of sister chromatid cohesion"
            evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
            "positive regulation of cell proliferation" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
            GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
            GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
            GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
            OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
        Length = 1227

 Score = 228 (85.3 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 67/180 (37%), Positives = 96/180 (53%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRP-NLKYEVIGKSKEALKQIGQLIK-DR 58
             + LTATAT+S  LD+ + L +    VL      P NL   V    ++  + +  L++ DR
Sbjct:   670 LGLTATATRSTALDVAQHLGVAEESVLRGQGTIPANLHLSV-SMDRDPDQALVTLLQSDR 728

Query:    59 F--KDQCGIIYCLSKNECVEVSNFLNQKCKIKT--------------VYYHAGLAARQRV 102
             F   D   IIYC  + +   V+  L + C  +T                YHAG+ +R+R 
Sbjct:   729 FCALDSI-IIYCNRREDTERVAALL-RTCLRETWALGPGGWAPEAVAEAYHAGMCSRERW 786

Query:   103 VVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
              VQ+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C
Sbjct:   787 RVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHC 846


>UNIPROTKB|Q4JNX8 [details] [associations]
            symbol:RTS "RECQL4-helicase-like protein" species:8355
            "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
            initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
            GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
            SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
            Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
            ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
            Uniprot:Q4JNX8
        Length = 1500

 Score = 195 (73.7 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 37/71 (52%), Positives = 50/71 (70%)

Query:    92 YHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESG 151
             YHAG++A +R  VQ  +  G +++V AT+AFGMG+DK DVR +IH  + K+ ESY QE G
Sbjct:  1020 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1079

Query:   152 RAGRDNLPSVC 162
             RAGRD   + C
Sbjct:  1080 RAGRDGKDAQC 1090

 Score = 61 (26.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 27/106 (25%), Positives = 50/106 (47%)

Query:     1 MALTATATQSVRLDILKALRI-PHA-LVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-D 57
             + LTATAT++   D+   L + P   + +  +   PNL   V    +   + +  L+K +
Sbjct:   889 LGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSV-SMDRNRDQALVTLLKGE 947

Query:    58 RFK--DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQR 101
             RF   D   I+YC  + E   +S  L    +  TV  ++ L ++++
Sbjct:   948 RFGCLDSV-IVYCTRREETQRISALLRTSLQGVTVSANSHLNSQEQ 992


>UNIPROTKB|Q33DM4 [details] [associations]
            symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
            [GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
            evidence=IMP] [GO:0035563 "positive regulation of chromatin
            binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
            GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
            Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
            HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
            ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
            Xenbase:XB-GENE-997817 Uniprot:Q33DM4
        Length = 1503

 Score = 195 (73.7 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 37/71 (52%), Positives = 50/71 (70%)

Query:    92 YHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESG 151
             YHAG++A +R  VQ  +  G +++V AT+AFGMG+DK DVR +IH  + K+ ESY QE G
Sbjct:  1023 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1082

Query:   152 RAGRDNLPSVC 162
             RAGRD   + C
Sbjct:  1083 RAGRDGKDAQC 1093

 Score = 61 (26.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 27/106 (25%), Positives = 50/106 (47%)

Query:     1 MALTATATQSVRLDILKALRI-PHA-LVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-D 57
             + LTATAT++   D+   L + P   + +  +   PNL   V    +   + +  L+K +
Sbjct:   892 LGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSV-SMDRNRDQALVTLLKGE 950

Query:    58 RFK--DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQR 101
             RF   D   I+YC  + E   +S  L    +  TV  ++ L ++++
Sbjct:   951 RFGCLDSV-IVYCTRREETQRISALLRTSLQGVTVSANSHLNSQEQ 995


>MGI|MGI:1931028 [details] [associations]
            symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
            strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
            development" evidence=IMP] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
            "DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
            [GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
            regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
            morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
            SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
            GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
            Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
            GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
            EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
            RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
            SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
            PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
            KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
            Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
            GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
        Length = 1216

 Score = 225 (84.3 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 64/178 (35%), Positives = 98/178 (55%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRP-NLKYEVIGKSKEALKQIGQLIK-DR 58
             + LTATAT+S   D+ + L I     L  S + P NL   V    +++ + +  L++ DR
Sbjct:   660 LGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSV-SMDRDSDQALVTLLQGDR 718

Query:    59 FKD-QCGIIYCLSKN----------ECVE-VSNFLNQKCKIKTVY--YHAGLAARQRVVV 104
             F+     IIYC  +            C+  V +   + C  + +   YHAG+++++R  V
Sbjct:   719 FRTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRV 778

Query:   105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
             Q+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C
Sbjct:   779 QQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHC 836


>FB|FBgn0040290 [details] [associations]
            symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
            helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
            ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
            evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
            [GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
            "positive regulation of cell proliferation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
            regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
            regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
            [GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
            division" evidence=IMP] [GO:0002164 "larval development"
            evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
            evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0043140
            "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
            [GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
            InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
            GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
            GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
            GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
            GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
            GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
            UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
            PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
            KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
            OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
            ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
        Length = 1579

 Score = 225 (84.3 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 60/164 (36%), Positives = 90/164 (54%)

Query:    15 ILKALRIPHALVLETSFD--RPNLKYEVIGKSK-EALKQIGQLIKDRFKDQC----GIIY 67
             I+  + +P  LVL  S D  R     +++   + E  + I  +I    +D+C    G I 
Sbjct:  1059 IISDIPLPDNLVLSVSKDENRDAALLQLLNSERFEPCQSI--IIYCTRRDECERIAGFIR 1116

Query:    68 -CLS-KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMG 125
              C+  + E  +      ++   +   YHAG+ A +R  VQK + + +++IV ATIAFGMG
Sbjct:  1117 TCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMG 1176

Query:   126 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
             I+KPD+R VIH  + ++ ESY QE GRAGRD LPS C +    K
Sbjct:  1177 INKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLFLDAK 1220


>UNIPROTKB|O94761 [details] [associations]
            symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
            "Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
            "DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
            3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
            renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
            "DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
            evidence=TAS] [GO:0007275 "multicellular organismal development"
            evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
            GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
            EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
            EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
            PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
            DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
            PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
            KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
            HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
            neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
            PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
            InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
            GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
            Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
            Pfam:PF11719 Uniprot:O94761
        Length = 1208

 Score = 214 (80.4 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 59/183 (32%), Positives = 93/183 (50%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKD-RF 59
             + LTATAT+    D+ + L +     L      P   +  +   ++  + +  L++  RF
Sbjct:   638 LGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRF 697

Query:    60 KDQCGII-YCLSKNECVEVSNFLNQKC--------------KIKTVYYHAGLAARQRVVV 104
             ++   II YC  + +   ++  L + C              K     YHAG+ +R+R  V
Sbjct:   698 QNLDSIIIYCNRREDTERIAALL-RTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRV 756

Query:   105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV 164
             Q+ +  G +++V AT+AFGMG+D+PDVR V+H  L  S ESY Q  GRAGRD  P+ C +
Sbjct:   757 QRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHL 816

Query:   165 LYQ 167
               Q
Sbjct:   817 FLQ 819


>UNIPROTKB|E1BW15 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
            EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
            Uniprot:E1BW15
        Length = 693

 Score = 178 (67.7 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 45/158 (28%), Positives = 78/158 (49%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             I++C +K +  E++  LN   K      H  +  +QR +  K +  G  +++ AT     
Sbjct:   369 IVFCETKKDANELA--LNASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAAR 426

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM-LRNGQG 183
             G+D P+V  V+ ++  K +ESY   SGR GR     +CI  YQ+K+ +++  + ++ G  
Sbjct:   427 GLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVKAGIT 486

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
             FK     TA    K   +   +  +   QT +E+F ES
Sbjct:   487 FKRVGVPTATDIIKASSKDAIRCLDSVPQTAIEYFKES 524


>UNIPROTKB|J3KRM6 [details] [associations]
            symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
            PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
            EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
            Uniprot:J3KRM6
        Length = 118

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 39/91 (42%), Positives = 53/91 (58%)

Query:   122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV------- 174
             FGMG+DK +VRFV H  ++KS+  YYQESGRAGRD  PS C + Y + D  +V       
Sbjct:     2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61

Query:   175 VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQ 205
             V  L+  +G K+    T MA    +  +CE+
Sbjct:    62 VAKLQEKRGNKASDKATIMA-FDALVTFCEE 91


>UNIPROTKB|Q9NR30 [details] [associations]
            symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
            sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
            "double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
            to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
            EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
            EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
            EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
            EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
            IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
            UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
            IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
            DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
            PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
            KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
            H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
            neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
            PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
            ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
            Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
        Length = 783

 Score = 176 (67.0 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 48/168 (28%), Positives = 76/168 (45%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K E  E+S   N   K      H  +  +QR +  K +  G   ++ AT     
Sbjct:   442 IIFCETKKEAQELSQ--NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAAR 499

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  VI ++  K +ESY   SGR GR     VCI  YQ K+++  V    + G  
Sbjct:   500 GLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIK 559

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   560 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGA 607


>UNIPROTKB|Q47ZX4 [details] [associations]
            symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 176 (67.0 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 50/175 (28%), Positives = 87/175 (49%)

Query:     3 LTATATQSV--RLDILKALRIPHALVLETSFDRPNLK--YEVIGKSKEALKQIGQLIKDR 58
             ++AT TQS    L  L        +V+  +F RP +   Y+  G++      +G++I   
Sbjct:   321 MSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGENNHLQSVVGRVIA-- 378

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
                +  I+Y     + +++S  L      +   ++     R R  + ++W   D+ I+ A
Sbjct:   379 -LPKPLILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREKIIEQWQKDDLDIIIA 437

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173
             T AFG+G+DK +V+ VIH  +  +I+ YYQE GRAGRD   +   V+Y  K  ++
Sbjct:   438 TSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAK 492


>TIGR_CMR|CPS_2945 [details] [associations]
            symbol:CPS_2945 "putative DEAD/DEAH box helicase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
            GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
            ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
            KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
            ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
            Uniprot:Q47ZX4
        Length = 843

 Score = 176 (67.0 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 50/175 (28%), Positives = 87/175 (49%)

Query:     3 LTATATQSV--RLDILKALRIPHALVLETSFDRPNLK--YEVIGKSKEALKQIGQLIKDR 58
             ++AT TQS    L  L        +V+  +F RP +   Y+  G++      +G++I   
Sbjct:   321 MSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGENNHLQSVVGRVIA-- 378

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
                +  I+Y     + +++S  L      +   ++     R R  + ++W   D+ I+ A
Sbjct:   379 -LPKPLILYTTLVQDSIDLSCHLKAIGLNRIALFNGKTDIRSREKIIEQWQKDDLDIIIA 437

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173
             T AFG+G+DK +V+ VIH  +  +I+ YYQE GRAGRD   +   V+Y  K  ++
Sbjct:   438 TSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAK 492


>ZFIN|ZDB-GENE-031113-10 [details] [associations]
            symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
            21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
            ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
            OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
            RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
            STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
            Uniprot:B1H1J4
        Length = 759

 Score = 175 (66.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 42/129 (32%), Positives = 64/129 (49%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             I++C +K E  E+S  LN   K      H  +  +QR V  K +  G  +++ AT     
Sbjct:   422 IVFCETKKEATELS--LNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAAR 479

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN-GQG 183
             G+D P+V  VI ++    +ESY   SGR GR     +CI  YQ+K+ S++  + +  G  
Sbjct:   480 GLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKFVEQKAGIT 539

Query:   184 FKSEAFKTA 192
             FK     TA
Sbjct:   540 FKRVGVPTA 548


>UNIPROTKB|E2QTL6 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
            evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
            RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
            GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
            CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
            Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
            NextBio:20852481 Uniprot:E2QTL6
        Length = 785

 Score = 173 (66.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 45/168 (26%), Positives = 80/168 (47%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K E  E+S  ++ +   +++  H  +  +QR +  K +  GD  ++ AT     
Sbjct:   444 IIFCETKKEAQELSQNVSIRQDAQSL--HGDIPQKQREITLKGFRNGDFGVLVATNVAAR 501

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  VI ++  K +ESY   SGR GR     +CI  YQ K+++       + G  
Sbjct:   502 GLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIK 561

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   562 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGA 609


>UNIPROTKB|F6V8G4 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
        Length = 786

 Score = 173 (66.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 45/168 (26%), Positives = 80/168 (47%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K E  E+S  ++ +   +++  H  +  +QR +  K +  GD  ++ AT     
Sbjct:   444 IIFCETKKEAQELSQNVSIRQDAQSL--HGDIPQKQREITLKGFRNGDFGVLVATNVAAR 501

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  VI ++  K +ESY   SGR GR     +CI  YQ K+++       + G  
Sbjct:   502 GLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIK 561

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   562 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGA 609


>UNIPROTKB|E1C6M6 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] InterPro:IPR001650
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0004386
            InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00680000100003
            EMBL:AADN02028008 IPI:IPI00822651 ProteinModelPortal:E1C6M6
            Ensembl:ENSGALT00000040808 OMA:DWLENEA ArrayExpress:E1C6M6
            Uniprot:E1C6M6
        Length = 294

 Score = 162 (62.1 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 39/130 (30%), Positives = 66/130 (50%)

Query:    43 KSKEALKQIGQLIKDRFKDQCG--IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQ 100
             +S +  + +G +I+  +    G  I++C +K E  E++  LN   K +    H  +  +Q
Sbjct:    76 RSSQRAEVLGDIIQV-YSGSHGRTIVFCETKKEANELA--LNSALKQEAQSLHGDIPQKQ 132

Query:   101 RVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160
             R V  K +  G  +++ AT     G+D P+V  VI  +  K ++SY   SGR GR     
Sbjct:   133 REVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTG 192

Query:   161 VCIVLYQKKD 170
             +CI  YQ+K+
Sbjct:   193 ICICFYQRKE 202


>ASPGD|ASPL0000073665 [details] [associations]
            symbol:AN5092 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
            GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
            RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
            EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
            HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
        Length = 1571

 Score = 170 (64.9 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 62/219 (28%), Positives = 102/219 (46%)

Query:    33 RPNLKYEVIGKSKEALKQ--IGQLIKDRFKDQCG----IIYCLSKNECVEVSNFLNQKCK 86
             RP+L   V  K  + L Q  +   I+ R + Q G    I+Y   K++   +S      C+
Sbjct:  1103 RPSLPRGVPRKPHQWLTQPNVRGFIQQRIQ-QAGDGQVIVYANIKSQVDAIS------CE 1155

Query:    87 IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESY 146
             +    YH+  A   +  V +++ +   +I+ AT A GMGID PD+R VIH    +++  Y
Sbjct:  1156 LGCEAYHS--AVLDQTGVMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDY 1213

Query:   147 YQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCE-- 204
              QESGRAGRD L S  ++++ +                     + + A+ + +Q Y E  
Sbjct:  1214 SQESGRAGRDGLASKAVIVHPQ-----------GWDDLDPWVDRVSDAEFEHIQAYMEVV 1262

Query:   205 QKAECRRQTLLEHFGESFD---RKACKNGSN---PCDNC 237
             +   CRR  L ++   + D   R+ C++      PCD C
Sbjct:  1263 EGVGCRRYVLDQYLDGTVDGYTRQQCQDQDPDKLPCDAC 1301


>UNIPROTKB|A4FV23 [details] [associations]
            symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
            EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
            UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
            KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
        Length = 784

 Score = 166 (63.5 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 49/184 (26%), Positives = 83/184 (45%)

Query:    51 IGQLIK--DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW 108
             IG +I+    F+ +  II+C +K E  E+S   N   +      H  +  +QR +  K +
Sbjct:   428 IGDVIRVYSGFQGRT-IIFCETKKEAQELSQ--NVAVRQDAQSLHGDIPQKQREITLKGF 484

Query:   109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ- 167
               GD  ++ AT     G+D P+V  V+ ++  K +ESY   SGR GR     VCI  YQ 
Sbjct:   485 RNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQH 544

Query:   168 KKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC 227
             K+++       + G  FK     +     K   +   +  +    T + HF +S ++   
Sbjct:   545 KEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIE 604

Query:   228 KNGS 231
             + G+
Sbjct:   605 EKGA 608


>UNIPROTKB|F1SUG7 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
            [GO:0009615 "response to virus" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
            Uniprot:F1SUG7
        Length = 855

 Score = 166 (63.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 44/168 (26%), Positives = 75/168 (44%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K E  E+S   N   +      H  +  +QR +  K +  GD  ++ AT     
Sbjct:   514 IIFCETKKEAQELSQ--NAAVRQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAAR 571

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  V+ +   K +ESY   SGR GR     +CI  YQ K+++   +   + G  
Sbjct:   572 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIK 631

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +     K   +   +  +    T + HF +S ++   + G+
Sbjct:   632 FKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGA 679

 Score = 36 (17.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query:    35 NLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLS 70
             N K ++       L ++ Q++   F DQ   I C++
Sbjct:   397 NNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVA 432


>MGI|MGI:1860494 [details] [associations]
            symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
            evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
            evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
            "response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
            GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
            GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
            EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
            RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
            SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
            PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
            Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
            InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
            Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
        Length = 851

 Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 45/168 (26%), Positives = 75/168 (44%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K +  E+S   N   K      H  +  +QR +  K +  G+  ++ AT     
Sbjct:   514 IIFCETKKDAQELSQ--NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAAR 571

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  V+ +   K +ESY   SGR GR     VCI  YQ K+++       + G  
Sbjct:   572 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIK 631

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   632 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGA 679


>RGD|1307306 [details] [associations]
            symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
            to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
            RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
            STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
            Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
            UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
            Uniprot:Q3B8Q1
        Length = 782

 Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 45/168 (26%), Positives = 75/168 (44%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K +  E+S   N   K      H  +  +QR +  K +  G+  ++ AT     
Sbjct:   438 IIFCETKKDAQELSQ--NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAAR 495

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  V+ +   K +ESY   SGR GR     VCI  YQ K+++       + G  
Sbjct:   496 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIK 555

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   556 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGA 603


>RGD|1310934 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] InterPro:IPR001650
            InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
            UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
            UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
            Genevestigator:Q5BJM0 Uniprot:Q5BJM0
        Length = 380

 Score = 152 (58.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 32/106 (30%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:    36 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 93

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +C+  YQ ++
Sbjct:    94 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRE 139


>UNIPROTKB|F1LX16 [details] [associations]
            symbol:F1LX16 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
            Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
        Length = 659

 Score = 155 (59.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 44/168 (26%), Positives = 74/168 (44%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K +  E+S   N   K      H  +  +QR +  K +   +  ++ AT     
Sbjct:   322 IIFCETKKDAQELSQ--NTCIKQDAQSLHGDIPQKQREITLKGFRNDNFGVLVATNVAAR 379

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
             G+D P+V  V+ +   K +ESY   SGR GR     VCI  YQ K+++       + G  
Sbjct:   380 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIK 439

Query:   184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGS 231
             FK     +A    K   +   +  +    T + HF +S ++   + G+
Sbjct:   440 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGA 487


>UNIPROTKB|E2RPT4 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
            EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
        Length = 687

 Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   395 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 452

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +CI  YQ ++
Sbjct:   453 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 498


>UNIPROTKB|F1MMK3 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
            UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
            GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
            Uniprot:F1MMK3
        Length = 737

 Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   393 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 450

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +CI  YQ ++
Sbjct:   451 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 496


>UNIPROTKB|Q9BQ39 [details] [associations]
            symbol:DDX50 "ATP-dependent RNA helicase DDX50"
            species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
            EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
            UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
            SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
            DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
            PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
            KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
            HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
            PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
            PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
            GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
            CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
        Length = 737

 Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   393 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 450

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +CI  YQ ++
Sbjct:   451 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 496


>UNIPROTKB|F1SUG8 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
            Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
            EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
        Length = 737

 Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   393 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 450

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +CI  YQ ++
Sbjct:   451 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 496


>UNIPROTKB|E2QTT0 [details] [associations]
            symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
            Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
        Length = 738

 Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   394 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 451

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +CI  YQ ++
Sbjct:   452 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 497


>MGI|MGI:2182303 [details] [associations]
            symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
            Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
            SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
            HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
            OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
            UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
            PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
            Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
            UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
            CleanEx:MM_DDX50 Genevestigator:Q99MJ9
            GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
        Length = 734

 Score = 152 (58.6 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 32/106 (30%), Positives = 53/106 (50%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+C +K    E++  +N   K      H  +A  QR +  K +  G  +++ AT     
Sbjct:   390 IIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAAR 447

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P+V  VI ++  + +ESY   SGR GR     +C+  YQ ++
Sbjct:   448 GLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRE 493


>ASPGD|ASPL0000051195 [details] [associations]
            symbol:AN1634 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
            GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
            HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
            ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
            GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
        Length = 782

 Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 47/174 (27%), Positives = 73/174 (41%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETS---FDRPNLKYEVIGKSKEALKQIGQLIKD 57
             M  TAT   +V     K LR P  + + ++    D    + E+I    +  K++G+++  
Sbjct:   558 MMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGEILSS 617

Query:    58 R-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
               F+    I++   K  C  ++  + Q     +V  H      QR         G   ++
Sbjct:   618 GDFRPPI-IVFVNIKRNCDAIAREIKQ-WGFSSVTLHGSKTQEQREAALASVRNGSTDVL 675

Query:   117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
              AT   G GID PDV  VI+  ++ SIESY    GR GR     V I     +D
Sbjct:   676 VATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNED 729


>CGD|CAL0005460 [details] [associations]
            symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
            ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
            "RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
            GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
            EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
            ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
            GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
            Uniprot:Q5APT8
        Length = 564

 Score = 144 (55.7 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 43/150 (28%), Positives = 68/150 (45%)

Query:    39 EVIGK-SKEALKQIGQLIK----DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYH 93
             EVI K  KE  K++ QL++    +   D   +I+ L K E   + NFL +  +      H
Sbjct:   375 EVINKFDKE--KKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRN-RFSVAAIH 431

Query:    94 AGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRA 153
               L+ +QR      + +G   ++ AT     G+D P+V+ VI+ T   +IE Y    GR 
Sbjct:   432 GDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRT 491

Query:   154 GRDNLPSVCIVLY--QKKDFSRVVCMLRNG 181
             GR         L+   +K  S  +C +  G
Sbjct:   492 GRAGAKGTAHTLFTEDEKHLSGALCNILRG 521


>POMBASE|SPAC17G6.14c [details] [associations]
            symbol:uap56 "ATP-dependent RNA helicase Uap56"
            species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
            export complex" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
            [GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
            "RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
            GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
            GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
            OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
            RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
            STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
            KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
        Length = 434

 Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 45/178 (25%), Positives = 80/178 (44%)

Query:     1 MALTATATQSVRLDILKALRIPHALVL--ETSFDRPNLKYEVIGKSKEAL-KQIGQLIKD 57
             M  +AT +  +R    K ++ P  + +  ET      L+   +   ++A  ++I  L+ D
Sbjct:   233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLL-D 291

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
               +    +I+  S +   E+   L + C   ++  H GL   +R+   K +   D +I  
Sbjct:   292 SLEFNQVVIFVKSVSRANELDRLLRE-CNFPSICIHGGLPQEERIKRYKAFKDFDKRICV 350

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             AT  FG GID   V  VI+  +  S +SY    GRAGR     + I     ++ S+++
Sbjct:   351 ATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQIL 408


>TAIR|locus:2057640 [details] [associations]
            symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
            GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
            RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
            SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
            EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
            GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
            ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
            Uniprot:P93008
        Length = 733

 Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 41/154 (26%), Positives = 71/154 (46%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNL--KYEVIGKSKEALKQIGQLIKDRFKD 61
             +AT    V     K LR P  + + T+    +L  ++ ++ K  E   ++ +L+ D   +
Sbjct:   518 SATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLL-DELGE 576

Query:    62 QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121
             +  I++  +K  C  ++  L+ K   +    H G +  QR +  + +      ++ AT  
Sbjct:   577 KTAIVFVNTKKNCDSIAKNLD-KAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDV 635

Query:   122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
              G GID PDV  VI+  + K IE Y    GR GR
Sbjct:   636 VGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGR 669


>POMBASE|SPBCPT2R1.08c [details] [associations]
            symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
            PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
            EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
            EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
            NextBio:20892152 Uniprot:Q1RKN3
        Length = 1919

 Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 50/177 (28%), Positives = 83/177 (46%)

Query:     3 LTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQLIKDR--F 59
             L+AT  + + +   +       ++ ETS  R N+ Y +    + E L  +  L+K    F
Sbjct:  1353 LSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVF 1412

Query:    60 K-DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHT--GDV 113
             + D   II+C +K +   +   L+Q           Y   ++  +R +    +    G  
Sbjct:  1413 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1472

Query:   114 QIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             +I+ AT AFG+GI+   VR V+H  L  S   Y QE+GRAGRD   ++  + Y+K D
Sbjct:  1473 RIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529


>POMBASE|SPAC212.11 [details] [associations]
            symbol:tlh1 "RecQ type DNA helicase" species:4896
            "Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
            recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
            region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
            activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
            InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
            SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
            GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
            GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
            GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
            ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
            OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
        Length = 2100

 Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 50/177 (28%), Positives = 83/177 (46%)

Query:     3 LTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQLIKDR--F 59
             L+AT  + + +   +       ++ ETS  R N+ Y +    + E L  +  L+K    F
Sbjct:  1534 LSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVF 1593

Query:    60 K-DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHT--GDV 113
             + D   II+C +K +   +   L+Q           Y   ++  +R +    +    G  
Sbjct:  1594 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1653

Query:   114 QIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             +I+ AT AFG+GI+   VR V+H  L  S   Y QE+GRAGRD   ++  + Y+K D
Sbjct:  1654 RIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710


>UNIPROTKB|A4RBS3 [details] [associations]
            symbol:SUB2 "ATP-dependent RNA helicase SUB2"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
            RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
            STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
            KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
        Length = 436

 Score = 134 (52.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 41/158 (25%), Positives = 75/158 (47%)

Query:     1 MALTATATQSVRLDILKALRIP--HALVLETSFDRPNLK-YEVIGKSKEALKQIGQLIKD 57
             M  +AT +  ++    K ++ P  H +  +T      L+ Y V  + KE  +++ +L+ D
Sbjct:   234 MMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNELLDD 293

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
                +Q  II+  S     E+   L + C   ++  H+G++  +R+   K++   + +I  
Sbjct:   294 LQFNQV-IIFVKSTLRATELDKLLRE-CNFPSIAVHSGVSQEERIRRYKEFKEFNKRICV 351

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
             AT  FG GID   +   I+  +    +SY    GRAGR
Sbjct:   352 ATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGR 389


>POMBASE|SPBC17D1.06 [details] [associations]
            symbol:dbp3 "ATP-dependent RNA helicase Dbp3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
            "ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
            processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
            GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
            PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
            STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
            GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
            Uniprot:Q10202
        Length = 578

 Score = 133 (51.9 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 42/147 (28%), Positives = 62/147 (42%)

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
             KD   +I+ L K E   V   L +K  +  V  H  ++   R+     + +G   ++ AT
Sbjct:   416 KDDKILIFVLYKKEAARVEGTLARKYNV--VGIHGDMSQGARLQALNDFKSGKCPVLVAT 473

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR---VVC 176
                  G+D P V+ VI+ T   +IE Y    GR GR N     I  +  +D S    +V 
Sbjct:   474 DVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVN 533

Query:   177 MLRNG-QGFKSEAFKTAMAQAKKMQQY 202
             +LR   Q      FK   A   K+  Y
Sbjct:   534 VLRQAKQDIPEGLFKFGTAVKPKLNAY 560


>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
            symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
            polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
            GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
            EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
            RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
            Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
            InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
        Length = 807

 Score = 134 (52.2 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 51/172 (29%), Positives = 75/172 (43%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNLKYE--VIGKSK-EALKQIGQLIKDRFK 60
             TAT   +V       LR P A+V   S  +P+ + E  VI  S+ E  K++ +++   F+
Sbjct:   593 TATMPPAVERLARSYLRRP-AVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFE 651

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
                 II+   K  C  ++  L +K        H G    QR         G   I+ AT 
Sbjct:   652 PPI-IIFVNQKKGCDVLAKSL-EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATD 709

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172
               G GID  DV  V++  ++K+IE Y    GR GR     V +    K+D S
Sbjct:   710 VAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSS 761


>TAIR|locus:2087852 [details] [associations]
            symbol:PMH2 "putative mitochondrial RNA helicase 2"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
            evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
            GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
            GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
            UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
            PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
            KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
            HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
            ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
            Uniprot:Q9LUW5
        Length = 616

 Score = 132 (51.5 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 38/146 (26%), Positives = 65/146 (44%)

Query:    38 YEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97
             Y +I  S      IG L+ +  K    I++  +K +   +S  L +  K + +  H  ++
Sbjct:   326 YSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEAL--HGDIS 383

Query:    98 ARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157
               QR      +  G   I+ AT     G+D P+V  +IH  L  + E++   +GR GR  
Sbjct:   384 QSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAG 443

Query:   158 LPSVCIVLYQKKDFSRVVCMLRNGQG 183
                  I++Y + D SR V ++    G
Sbjct:   444 KKGSAILIYSQ-DQSRAVKIIEREVG 468


>RGD|1308685 [details] [associations]
            symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
            evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
            [GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
            GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
            RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
            GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
        Length = 819

 Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 49/170 (28%), Positives = 71/170 (41%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNLKYE---VIGKSKEALKQIGQLIKDRFK 60
             TAT   +V       LR P A+V   S  +P+ + E    +    E  K++  +++  F 
Sbjct:   605 TATMPPAVERLARSYLRRP-AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGF- 662

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D   II+   K  C  ++  L +K        H G    QR         G   I+ AT 
Sbjct:   663 DPPIIIFVNQKKGCDVLAKSL-EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATD 721

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
               G GID  DV  V++  ++K+IE Y    GR GR     V I    K+D
Sbjct:   722 VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 771


>UNIPROTKB|A6QLB2 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
            HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
            EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
            UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
            GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
            Uniprot:A6QLB2
        Length = 820

 Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 49/170 (28%), Positives = 71/170 (41%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNLKYE---VIGKSKEALKQIGQLIKDRFK 60
             TAT   +V       LR P A+V   S  +P+ + E    +    E  K++  +++  F 
Sbjct:   606 TATMPPAVERLARSYLRRP-AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGF- 663

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D   II+   K  C  ++  L +K        H G    QR         G   I+ AT 
Sbjct:   664 DPPIIIFVNQKKGCDVLAKSL-EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATD 722

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
               G GID  DV  V++  ++K+IE Y    GR GR     V I    K+D
Sbjct:   723 VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772


>UNIPROTKB|E2RTL6 [details] [associations]
            symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
            GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
            RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
            Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
            NextBio:20853071 Uniprot:E2RTL6
        Length = 820

 Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 49/170 (28%), Positives = 71/170 (41%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNLKYE---VIGKSKEALKQIGQLIKDRFK 60
             TAT   +V       LR P A+V   S  +P+ + E    +    E  K++  +++  F 
Sbjct:   606 TATMPPAVERLARSYLRRP-AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGF- 663

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D   II+   K  C  ++  L +K        H G    QR         G   I+ AT 
Sbjct:   664 DPPIIIFVNQKKGCDVLAKSL-EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATD 722

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
               G GID  DV  V++  ++K+IE Y    GR GR     V I    K+D
Sbjct:   723 VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772


>UNIPROTKB|Q9BUQ8 [details] [associations]
            symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
            "RNA splicing, via transesterification reactions" evidence=TAS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=IC]
            [GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
            GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
            KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
            RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
            SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
            STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
            PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
            KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
            HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
            PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
            InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
            GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
            CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
            Uniprot:Q9BUQ8
        Length = 820

 Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 49/170 (28%), Positives = 71/170 (41%)

Query:     4 TATATQSVRLDILKALRIPHALVLETSFDRPNLKYE---VIGKSKEALKQIGQLIKDRFK 60
             TAT   +V       LR P A+V   S  +P+ + E    +    E  K++  +++  F 
Sbjct:   606 TATMPPAVERLARSYLRRP-AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGF- 663

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
             D   II+   K  C  ++  L +K        H G    QR         G   I+ AT 
Sbjct:   664 DPPIIIFVNQKKGCDVLAKSL-EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATD 722

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
               G GID  DV  V++  ++K+IE Y    GR GR     V I    K+D
Sbjct:   723 VAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772


>TAIR|locus:2147987 [details] [associations]
            symbol:UAP56a "homolog of human UAP56 a" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
            GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
            EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
            IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
            RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
            UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
            STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
            EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
            KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
            InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
            Genevestigator:Q56XG6 Uniprot:Q56XG6
        Length = 427

 Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 43/178 (24%), Positives = 78/178 (43%)

Query:     1 MALTATATQSVRLDILKALRIPHALVL--ETSFDRPNLKYEVIGKSK-EALKQIGQLIKD 57
             M  +AT ++ +R    K ++ P  + +  E       L    I  S+ E  +++  L+ D
Sbjct:   226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLL-D 284

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
                    +I+  S +   E++  L + C   ++  H+G++  +R+   K +  G  +I+ 
Sbjct:   285 ALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKSFKEGHKRILV 343

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             AT   G GID   V  VI+  +  S ++Y    GRAGR     + I        S V+
Sbjct:   344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVL 401


>DICTYBASE|DDB_G0270396 [details] [associations]
            symbol:ddx49 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
            GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
            RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
            PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
            KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
        Length = 508

 Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 50/166 (30%), Positives = 76/166 (45%)

Query:     3 LTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQ 62
             L  +AT +  L  L ++ +    + E      N KY+ +    + LKQ    +    KD 
Sbjct:   184 LLFSATMTKNLTKLDSIALNKPFIFED-----NSKYDTV----DTLKQEYIYMPAPTKD- 233

Query:    63 CGIIYCLSKNE----------C--VE-VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109
             C ++Y L K+E          C  VE V   LN K  I +V  H+ L  + R+   K + 
Sbjct:   234 CYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLN-KLDIPSVSLHSFLDQKSRLAALKTFK 292

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
             +G V+++ AT     G+D PDV+ VI+  LS S + Y    GR  R
Sbjct:   293 SGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTAR 338


>SGD|S000002242 [details] [associations]
            symbol:SUB2 "Component of the TREX complex required for
            nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
            [GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
            [GO:0000346 "transcription export complex" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=IMP] [GO:0006368
            "transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
            evidence=IMP] [GO:0000781 "chromosome, telomeric region"
            evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
            EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
            GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
            GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
            GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
            OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
            RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
            DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
            PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
            KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
            Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
        Length = 446

 Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 42/182 (23%), Positives = 78/182 (42%)

Query:     1 MALTATATQSVRLDILKALRIPHALVL--ETSFDRPNLK-YEVIGKSKEALKQIGQLIKD 57
             M  +AT +Q +R    + L+ P  + +  E       L+ Y +  + +E  +++ QL+ D
Sbjct:   244 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDD 303

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
                +Q  II+  S     E++  LN       +  H  +   +R+   K +   + +I  
Sbjct:   304 LEFNQV-IIFVKSTTRANELTKLLNAS-NFPAITVHGHMKQEERIARYKAFKDFEKRICV 361

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             +T  FG GID   +   I+  L+   + Y    GRAGR     + I     K+   V+  
Sbjct:   362 STDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAK 421

Query:   178 LR 179
             ++
Sbjct:   422 IQ 423


>SGD|S000002428 [details] [associations]
            symbol:FAL1 "Nucleolar protein required for maturation of 18S
            rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
            HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
            EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
            OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
            RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
            SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
            STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
            GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
            CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
            Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
            Uniprot:Q12099
        Length = 399

 Score = 125 (49.1 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 45/178 (25%), Positives = 77/178 (43%)

Query:     1 MALTATATQSVRLDIL-KALRIP-HALVLETSFDRPNLKYEVIGKSKEALK--QIGQLIK 56
             + ++AT  + + L++  K +  P   LV         +K  V+   KE  K   +  +  
Sbjct:   203 VVVSATMNKDI-LEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261

Query:    57 DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
                  QC +I+C +K +   +S  L Q      V  H  +   +R  V   + TG  +++
Sbjct:   262 SLTITQC-VIFCNTKKKVDWLSQRLIQS-NFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319

Query:   117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV 174
              +T  +  GID   V  VI+  L + IE+Y    GR+GR     V I    K D +++
Sbjct:   320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377


>DICTYBASE|DDB_G0281925 [details] [associations]
            symbol:DDB_G0281925 "DEAD/DEAH box helicase"
            species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
            EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
            ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
            GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
            Uniprot:Q54T87
        Length = 586

 Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             I++C  K +C +  ++L+ +  +K++  H+G   R R    K +    ++I+ AT     
Sbjct:   364 IVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAAR 423

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
             G+D P V+ V +  L  +IE Y    GR GR
Sbjct:   424 GLDIPSVKAVFNYRLPGNIEDYVHRIGRTGR 454


>TAIR|locus:2087832 [details] [associations]
            symbol:PMH1 "putative mitochondrial RNA helicase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
            GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
            EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
            UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
            STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
            GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
            InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
            Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
        Length = 610

 Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 37/146 (25%), Positives = 67/146 (45%)

Query:    38 YEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97
             Y +   S      IG L+K+  K    I++  +K +   ++  L +  K + ++     A
Sbjct:   338 YSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQA 397

Query:    98 ARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157
              R+R +    +  G+  I+ AT     G+D P+V  VIH  L  + E++   +GR GR  
Sbjct:   398 QRERTLAG--FRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG 455

Query:   158 LPSVCIVLYQKKDFSRVVCMLRNGQG 183
                  I+++ + D +R V M+    G
Sbjct:   456 KKGSAILIHGQ-DQTRAVKMIEKEVG 480


>UNIPROTKB|F1NA53 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
            IPI:IPI00684751 ProteinModelPortal:F1NA53
            Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
        Length = 402

 Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 47/174 (27%), Positives = 82/174 (47%)

Query:     3 LTATATQSVRLDILKALRIPHALVLETS-----FDRPNLKYEVIGKS-KEA-LKQIGQLI 55
             L  +AT +  L+ LK+L +      E +      D  + +Y ++ ++ K+A L  + Q  
Sbjct:   183 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTF 242

Query:    56 KDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
             +D  +D   II+  +  EC ++ N + +K    +V  H+ +  RQR     K+ +   +I
Sbjct:   243 QDEHEDWSIIIFTKTCKEC-QILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKI 301

Query:   116 VCATIAFGMGIDKPDVRFVI-HNT--LSKSIESYYQESGRAGRDNLPSVCIVLY 166
             + AT     G+D P V+ VI HNT  L K        + RAGR+ +    +  Y
Sbjct:   302 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 355


>ASPGD|ASPL0000069536 [details] [associations]
            symbol:AN7424 species:162425 "Emericella nidulans"
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
            GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
        Length = 488

 Score = 123 (48.4 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 29/106 (27%), Positives = 48/106 (45%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             + +CL K E + V   L  K   K    H  L+ ++R    + + +G   ++ AT     
Sbjct:   327 LAFCLYKKEAMRVERLLRTK-GFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAAR 385

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
             G+D P V+ V++ T   ++E Y    GR GR       I L+ + D
Sbjct:   386 GLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 431


>UNIPROTKB|F1NYX0 [details] [associations]
            symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
            EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
            ArrayExpress:F1NYX0 Uniprot:F1NYX0
        Length = 482

 Score = 122 (48.0 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 47/174 (27%), Positives = 82/174 (47%)

Query:     3 LTATATQSVRLDILKALRIPHALVLETS-----FDRPNLKYEVIGKS-KEA-LKQIGQLI 55
             L  +AT +  L+ LK+L +      E +      D  + +Y ++ ++ K+A L  + Q  
Sbjct:   186 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTF 245

Query:    56 KDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
             +D  +D   II+  +  EC ++ N + +K    +V  H+ +  RQR     K+ +   +I
Sbjct:   246 QDEHEDWSIIIFTKTCKEC-QILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKI 304

Query:   116 VCATIAFGMGIDKPDVRFVI-HNT--LSKSIESYYQESGRAGRDNLPSVCIVLY 166
             + AT     G+D P V+ VI HNT  L K        + RAGR+ +    +  Y
Sbjct:   305 LIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQY 358


>DICTYBASE|DDB_G0274325 [details] [associations]
            symbol:ddx52 "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
            GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
            EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
            ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
            KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
        Length = 668

 Score = 123 (48.4 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 40/166 (24%), Positives = 66/166 (39%)

Query:    41 IGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV-SNFLNQKCKIKTVYYHAGLAAR 99
             +GK +  L  + QLI+   +    +I+  SK    ++    +     +  +  H+     
Sbjct:   421 VGKEEGKLLAVRQLIQKGLEPPI-LIFTQSKERAHDLFQELIFDGINVDVI--HSERTQF 477

Query:   100 QRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159
             QR  + KK+  G + ++  T     G+D   V FVI+     ++ SY    GR GR   P
Sbjct:   478 QRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRP 537

Query:   160 SVCIVLYQKKD---FSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQY 202
              V   LY   D      +V  ++       +       Q KK QQY
Sbjct:   538 GVAYTLYTDADTPMLPTIVHAMKQSGSHVPDWMLNLKVQGKKKQQY 583


>TAIR|locus:2148027 [details] [associations]
            symbol:UAP56b "homolog of human UAP56 b" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
            GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
            UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
            OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
            ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
            EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
        Length = 486

 Score = 121 (47.7 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 30/111 (27%), Positives = 52/111 (46%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             +I+  S +   E++  L + C   ++  H+G++  +R+   K +  G  +I+ AT   G 
Sbjct:   351 VIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGR 409

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             GID   V  VI+  +  S ++Y    GRAGR     + I        S V+
Sbjct:   410 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVL 460


>UNIPROTKB|Q9KS53 [details] [associations]
            symbol:VC1407 "ATP-dependent RNA helicase RhlE"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query:     1 MALTATATQSVRLDILK-ALRIPHAL-VLETSFDRPNLKYEVIGKSKEALKQI-GQLIKD 57
             +  +AT ++ VR ++ K A+R PH + +      + N+   +I   K+    +   LI +
Sbjct:   182 LLFSATLSRKVR-ELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             +  DQ  +I+  +K+   ++ + L +K  I    +H+G +   R  + + + +G ++ + 
Sbjct:   241 QQWDQA-LIFIETKHGAAKLVSQL-EKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT     GID   +  V++  L    + Y    GR GR       I    K +F  + CM
Sbjct:   299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL-CM 357

Query:   178 LRNGQG 183
             + +  G
Sbjct:   358 IESRLG 363


>TIGR_CMR|VC_1407 [details] [associations]
            symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
            RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
            GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
            ProtClustDB:CLSK874358 Uniprot:Q9KS53
        Length = 397

 Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 43/186 (23%), Positives = 85/186 (45%)

Query:     1 MALTATATQSVRLDILK-ALRIPHAL-VLETSFDRPNLKYEVIGKSKEALKQI-GQLIKD 57
             +  +AT ++ VR ++ K A+R PH + +      + N+   +I   K+    +   LI +
Sbjct:   182 LLFSATLSRKVR-ELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINE 240

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
             +  DQ  +I+  +K+   ++ + L +K  I    +H+G +   R  + + + +G ++ + 
Sbjct:   241 QQWDQA-LIFIETKHGAAKLVSQL-EKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
             AT     GID   +  V++  L    + Y    GR GR       I    K +F  + CM
Sbjct:   299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL-CM 357

Query:   178 LRNGQG 183
             + +  G
Sbjct:   358 IESRLG 363


>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
            symbol:PFB0445c "helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
            ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
            ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
            GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
            OMA:LECVINY Uniprot:Q9TY94
        Length = 457

 Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 39/174 (22%), Positives = 81/174 (46%)

Query:     1 MALTATATQSVRLDILKA-LRIPHALVLETSFD---RPNLKYEVIGKSKEALKQIGQLIK 56
             M  +AT  + +R D+ K  L+ P  + ++          L++ V  + K+  +++ +++ 
Sbjct:   256 MFFSATMAKEMR-DVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEIL- 313

Query:    57 DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
             D  +    II+  S    + +   L + C   ++  H GL  ++R+    K+   + +I+
Sbjct:   314 DALEFNQVIIFVKSVTRAITLDKLLTE-CNFPSIAIHGGLEQQERIERYDKFKKFENRIL 372

Query:   117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
              +T  FG GID   V  VI+  + ++ +SY    GRAGR     + +     ++
Sbjct:   373 VSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQE 426


>UNIPROTKB|Q9TY94 [details] [associations]
            symbol:UAP56 "DEAD box helicase, UAP56" species:36329
            "Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
            ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
            ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
            GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
            OMA:LECVINY Uniprot:Q9TY94
        Length = 457

 Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 39/174 (22%), Positives = 81/174 (46%)

Query:     1 MALTATATQSVRLDILKA-LRIPHALVLETSFD---RPNLKYEVIGKSKEALKQIGQLIK 56
             M  +AT  + +R D+ K  L+ P  + ++          L++ V  + K+  +++ +++ 
Sbjct:   256 MFFSATMAKEMR-DVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEIL- 313

Query:    57 DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
             D  +    II+  S    + +   L + C   ++  H GL  ++R+    K+   + +I+
Sbjct:   314 DALEFNQVIIFVKSVTRAITLDKLLTE-CNFPSIAIHGGLEQQERIERYDKFKKFENRIL 372

Query:   117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
              +T  FG GID   V  VI+  + ++ +SY    GRAGR     + +     ++
Sbjct:   373 VSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQE 426


>UNIPROTKB|F1NJ30 [details] [associations]
            symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR001650 InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003723 GO:GO:0004386 GeneTree:ENSGT00680000100003
            EMBL:AADN02028008 IPI:IPI00593310 ProteinModelPortal:F1NJ30
            Ensembl:ENSGALT00000040804 ArrayExpress:F1NJ30 Uniprot:F1NJ30
        Length = 271

 Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 23/65 (35%), Positives = 35/65 (53%)

Query:   106 KKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
             K +  G  +++ AT     G+D P+V  VI  +  K ++SY   SGR GR     +CI  
Sbjct:     1 KGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICF 60

Query:   166 YQKKD 170
             YQ+K+
Sbjct:    61 YQRKE 65


>TAIR|locus:2118509 [details] [associations]
            symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
            binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
            bisphosphate carboxylase complex biogenesis" evidence=IMP]
            [GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
            "rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
            process" evidence=RCA] [GO:0009658 "chloroplast organization"
            evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
            Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
            GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
            GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
            EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
            PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
            ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
            EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
            KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
            HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
            ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
            GO:GO:1901259 Uniprot:Q56X76
        Length = 621

 Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
 Identities = 54/196 (27%), Positives = 88/196 (44%)

Query:     3 LTATATQSVRLDILKALR-IPHALVLETSFDRPNLKYEVI----GKSK-EALKQIGQLIK 56
             +TAT T +V+  + +  + I H           N +++ I    G+ K EAL Q+  L  
Sbjct:   308 VTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQV--LEP 365

Query:    57 DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW--HTGDVQ 114
                K    +++C + N    V ++L++  +I TV YH  + A QRV   KK+    GD  
Sbjct:   366 SLAKGSKVMVFCNTLNSSRAVDHYLSEN-QISTVNYHGEVPAEQRVENLKKFKDEEGDCP 424

Query:   115 -IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD--- 170
              +VC  +A   G+D  DV  V+     K+   Y   +GR  R         L  +KD   
Sbjct:   425 TLVCTDLA-ARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQML 482

Query:   171 FSRVVCMLRNGQGFKS 186
              +R+   +RN +  +S
Sbjct:   483 AARIEEAMRNNESLES 498


>SGD|S000001767 [details] [associations]
            symbol:TIF1 "Translation initiation factor eIF4A"
            species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
            initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006413 "translational
            initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
            evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
            "eukaryotic translation initiation factor 4F complex"
            evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
            SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
            EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
            OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
            EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
            RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
            PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
            PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
            SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
            STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
            EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
            KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
            EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
            GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
        Length = 395

 Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
 Identities = 42/171 (24%), Positives = 73/171 (42%)

Query:     3 LTATATQSVRLDILKALRIP-HALVLETSFDRPNLKYEVIGKSKEALK-QIGQLIKDRFK 60
             L+AT    V     K +R P   LV +       +K   +   +E  K +    + D   
Sbjct:   200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259

Query:    61 DQCGIIYCLSKNECVEVSNFL-NQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
                 +I+C ++ +  E++  L N K  +  +Y  + L  ++R  + K++ +G  +I+ +T
Sbjct:   260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY--SDLPQQERDTIMKEFRSGSSRILIST 317

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
                  GID   V  VI+  L  + E+Y    GR GR     V I     +D
Sbjct:   318 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368


>SGD|S000003674 [details] [associations]
            symbol:TIF2 "Translation initiation factor eIF4A"
            species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
            initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
            [GO:0016281 "eukaryotic translation initiation factor 4F complex"
            evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
            evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0006413 "translational initiation"
            evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
            GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
            OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
            EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
            RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
            PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
            PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
            SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
            STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
            EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
            KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
            EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
            GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
        Length = 395

 Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
 Identities = 42/171 (24%), Positives = 73/171 (42%)

Query:     3 LTATATQSVRLDILKALRIP-HALVLETSFDRPNLKYEVIGKSKEALK-QIGQLIKDRFK 60
             L+AT    V     K +R P   LV +       +K   +   +E  K +    + D   
Sbjct:   200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259

Query:    61 DQCGIIYCLSKNECVEVSNFL-NQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
                 +I+C ++ +  E++  L N K  +  +Y  + L  ++R  + K++ +G  +I+ +T
Sbjct:   260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY--SDLPQQERDTIMKEFRSGSSRILIST 317

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
                  GID   V  VI+  L  + E+Y    GR GR     V I     +D
Sbjct:   318 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368


>UNIPROTKB|Q3AFI3 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query:    65 IIYCLSK---NECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121
             I++C +K   +E VE  NF     K      H  ++ R+R    K +  G  +++ AT  
Sbjct:   243 IVFCRTKKRVDEVVEQLNFRGYAAK----GLHGDMSQRERTQTIKSFKAGKTELLVATDV 298

Query:   122 FGMGIDKPDVRFVIHNTLSKSIESYYQE---SGRAGRDNLPSVCIVLYQKKDFSRVV 175
                G+D PDV  VI+  + ++ ESY      +GRAGR+   ++ ++ Y+++   + +
Sbjct:   299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREG-KAITLINYRERKLLKAI 354


>TIGR_CMR|CHY_0229 [details] [associations]
            symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
            family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
            ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
            KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
            BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
        Length = 430

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 32/117 (27%), Positives = 59/117 (50%)

Query:    65 IIYCLSK---NECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121
             I++C +K   +E VE  NF     K      H  ++ R+R    K +  G  +++ AT  
Sbjct:   243 IVFCRTKKRVDEVVEQLNFRGYAAK----GLHGDMSQRERTQTIKSFKAGKTELLVATDV 298

Query:   122 FGMGIDKPDVRFVIHNTLSKSIESYYQE---SGRAGRDNLPSVCIVLYQKKDFSRVV 175
                G+D PDV  VI+  + ++ ESY      +GRAGR+   ++ ++ Y+++   + +
Sbjct:   299 AARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREG-KAITLINYRERKLLKAI 354


>POMBASE|SPCC63.11 [details] [associations]
            symbol:prp28 "U5 snRNP-associated protein Prp28
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
            "cis assembly of pre-catalytic spliceosome" evidence=ISS]
            [GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
            GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
            OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
            ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
            GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
        Length = 662

 Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
 Identities = 38/141 (26%), Positives = 65/141 (46%)

Query:    32 DRPNLKYEVIGKSKEALKQIGQLIK-DRFKDQCGIIYCLSKNECVEVSNFLNQ-KCKIKT 89
             DR   + E+I    +  +++ ++++ +RF     II+   K     ++  LN       T
Sbjct:   487 DRVEQRVEMISDDSKKWRRVEEILESNRFSPPI-IIFVNLKRNIEAIAKQLNAIGWHAVT 545

Query:    90 VYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 149
             ++       R+R + Q +  T D+ +V   IA G GID P+V  V++  ++KSIE Y   
Sbjct:   546 LHGSKSQEQRERAIEQLRNKTADI-LVATDIA-GRGIDIPNVSLVLNYNMAKSIEDYTHR 603

Query:   150 SGRAGRDNLPSVCIVLYQKKD 170
              GR GR       I     +D
Sbjct:   604 IGRTGRAGKSGTAITFLGPED 624


>TIGR_CMR|BA_2109 [details] [associations]
            symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
            family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
            RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
            ProteinModelPortal:Q81RE0 DNASU:1085806
            EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
            EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
            GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
            ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
            BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
        Length = 389

 Score = 116 (45.9 bits), Expect = 0.00022, P = 0.00022
 Identities = 31/114 (27%), Positives = 53/114 (46%)

Query:    86 KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIES 145
             K+K    HA  + ++R    + +  G ++I+ AT     GID  D+  VIH  L  +++ 
Sbjct:   258 KMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQ 317

Query:   146 YYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN-GQGF-KSEAFKTAMAQAK 197
             Y   SGR GR       + L   ++  +++   +  G  F K E FK +  + K
Sbjct:   318 YIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLGIVFTKQEMFKGSFVETK 371


>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
            symbol:PFE0925c "snrnp protein, putative"
            species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
            HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
 Identities = 38/135 (28%), Positives = 59/135 (43%)

Query:    36 LKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAG 95
             L++   GK K+ L++I ++ +        I++   K     +S  +  K K K V  H G
Sbjct:   947 LEFLTEGKKKQKLQEILEMYEPPI-----IVFVNQKKVADIISKSIT-KMKYKAVALHGG 1000

Query:    96 LAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
              A   R      +   +  I+ AT   G GID   V+ VI+  + K IESY    GR GR
Sbjct:  1001 KAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGR 1060

Query:   156 DNLPSVCIVLYQKKD 170
               +  + I    + D
Sbjct:  1061 AGMKGLAISFITEHD 1075


>UNIPROTKB|Q8I0W7 [details] [associations]
            symbol:PFE0925c "Snrnp protein, putative" species:36329
            "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
            InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
            HOGENOM:HOG000268796 RefSeq:XP_001351742.1
            ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
            GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
            ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
        Length = 1123

 Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
 Identities = 38/135 (28%), Positives = 59/135 (43%)

Query:    36 LKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAG 95
             L++   GK K+ L++I ++ +        I++   K     +S  +  K K K V  H G
Sbjct:   947 LEFLTEGKKKQKLQEILEMYEPPI-----IVFVNQKKVADIISKSIT-KMKYKAVALHGG 1000

Query:    96 LAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
              A   R      +   +  I+ AT   G GID   V+ VI+  + K IESY    GR GR
Sbjct:  1001 KAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGR 1060

Query:   156 DNLPSVCIVLYQKKD 170
               +  + I    + D
Sbjct:  1061 AGMKGLAISFITEHD 1075


>WB|WBGene00017162 [details] [associations]
            symbol:ddx-23 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
            epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
            [GO:0010172 "embryonic body morphogenesis" evidence=IMP]
            [GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
            cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0040021 "hermaphrodite germ-line sex determination"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
            GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
            GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
            GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
            OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
            ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
            EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
            CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
            Uniprot:Q95QN2
        Length = 730

 Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
 Identities = 48/155 (30%), Positives = 71/155 (45%)

Query:     6 TATQSVRLDIL--KALRIPHALVLETSFDRPNLKYE-VIGKSKE--ALKQIGQLIKDRFK 60
             TAT S  ++ L  + LR P A+V   S  +P  + E V+    E    K++ ++++ +F+
Sbjct:   515 TATMSSAIERLARQYLRRP-AVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQ 573

Query:    61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
                 II+   K     +S  L  K   K    H G    QR    +    G   I+ AT 
Sbjct:   574 PPI-IIFVNQKKGADMLSKGLT-KLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATD 631

Query:   121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155
               G GID  DV  V++  ++KSIE Y    GR GR
Sbjct:   632 VAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGR 666


>MGI|MGI:2176740 [details] [associations]
            symbol:Helq "helicase, POLQ-like" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
            [GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
            DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
            [GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
            helicase complex" evidence=ISO] InterPro:IPR001650
            InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
            SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
            OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
            EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
            IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
            ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
            PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
            GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
            HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
            Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
        Length = 1069

 Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
 Identities = 45/168 (26%), Positives = 78/168 (46%)

Query:    24 ALVLETSFDRPNLKYEVIGKSKEALKQIGQLI-----KD----RFKDQCGIIYCLSKNEC 74
             ALV E     PN    V   SK+  + + +++     KD    R K++C +I  L     
Sbjct:   528 ALVTEVI---PNYSCLVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVIKSLRNIGN 584

Query:    75 VEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFV 134
              +V   L +       Y+H+GL + +R ++++ + TG + ++  T     G++ P  R +
Sbjct:   585 GKVCPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVI 644

Query:   135 IH-----NTLSKSIESYYQESGRAGRDNLPSV--CIVLYQKKDFSRVV 175
             +      NT  K    Y Q  GRAGR  + +    I+L Q+KD  +V+
Sbjct:   645 LRAPYVANTFLKR-NQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVL 691


>UNIPROTKB|Q8ECL2 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
 Identities = 41/172 (23%), Positives = 74/172 (43%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQI-GQLIKDRF 59
             +  +AT  + VR    K L  P    L++      ++  VI  ++E    +   LIK   
Sbjct:   194 LLFSATFPEEVRALTTKLLHQPLEYHLQSE-QESTIEQRVITVNREQKTALLAHLIKQHQ 252

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
               Q  +I+  +KN C  ++  L+++  I    +H   A   R  V   +  G++ ++ AT
Sbjct:   253 WSQA-LIFVSAKNTCNHLAQKLSKR-GISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171
                  GID   +  VI+  L +S   Y    GR+GR     + + L   +++
Sbjct:   311 DIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEY 362


>TIGR_CMR|SO_3125 [details] [associations]
            symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
            family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0008026 "ATP-dependent
            helicase activity" evidence=ISS] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
            ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
            GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
            Uniprot:Q8ECL2
        Length = 427

 Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
 Identities = 41/172 (23%), Positives = 74/172 (43%)

Query:     1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQI-GQLIKDRF 59
             +  +AT  + VR    K L  P    L++      ++  VI  ++E    +   LIK   
Sbjct:   194 LLFSATFPEEVRALTTKLLHQPLEYHLQSE-QESTIEQRVITVNREQKTALLAHLIKQHQ 252

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
               Q  +I+  +KN C  ++  L+++  I    +H   A   R  V   +  G++ ++ AT
Sbjct:   253 WSQA-LIFVSAKNTCNHLAQKLSKR-GISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171
                  GID   +  VI+  L +S   Y    GR+GR     + + L   +++
Sbjct:   311 DIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEY 362


>SGD|S000003046 [details] [associations]
            symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
            family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
            subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
            "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
            GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
            EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
            ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
            MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
            EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
            KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
            KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
            GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
        Length = 523

 Score = 116 (45.9 bits), Expect = 0.00035, P = 0.00035
 Identities = 35/142 (24%), Positives = 62/142 (43%)

Query:    42 GKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQR 101
             GK ++ L+ + +      K++  +I+ L K E   V   L           H  L+ +QR
Sbjct:   340 GKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYN-GYNVAAIHGDLSQQQR 398

Query:   102 VVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSV 161
                  ++ +G   ++ AT     G+D P+V+ VI+ T   ++E Y    GR GR      
Sbjct:   399 TQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGT 458

Query:   162 CIVLY--QKKDFSRVVCMLRNG 181
                L+  Q+K  +  +  + NG
Sbjct:   459 AHTLFTEQEKHLAGGLVNVLNG 480


>TIGR_CMR|CBU_0305 [details] [associations]
            symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
            "DNA recombination" evidence=ISS] InterPro:IPR001650
            InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
            TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
            ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
            KEGG:cbu:CBU_0305 PATRIC:17929305
            BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
        Length = 704

 Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
 Identities = 30/97 (30%), Positives = 49/97 (50%)

Query:    93 HAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRF-VIHNTLSKSIESYYQESG 151
             H  L   ++ VV   +  GD+ ++ AT    +G+D P+    VI N+    +   +Q  G
Sbjct:   535 HGRLTKEEKDVVMGAFKNGDIDLLVATTVIEVGVDVPNASLMVIENSERLGLAQIHQLRG 594

Query:   152 RAGRDNLPSVCIVLYQK---KDFSRVVCMLRNGQ-GF 184
             R GR    S C++LYQ+   K+    + +LR+ Q GF
Sbjct:   595 RVGRGEQKSYCVLLYQEPLSKNARARLTLLRDTQDGF 631


>WB|WBGene00011032 [details] [associations]
            symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
            GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
            OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
            ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
            EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
            KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
            InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
        Length = 581

 Score = 116 (45.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 30/125 (24%), Positives = 57/125 (45%)

Query:    51 IGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQ-KCKIKTVYYHAGLAARQRVVVQKKWH 109
             I  L++  FK    +++  SK+  V++   L+     +K    ++G + ++R    +++ 
Sbjct:   364 IRNLLRTSFKPPA-LVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFR 422

Query:   110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169
              G++ ++  T   G G+D  DV  VI+  L  SI SY    GR GR       +  +   
Sbjct:   423 RGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDA 482

Query:   170 DFSRV 174
             D   +
Sbjct:   483 DMKYI 487


>TAIR|locus:2081061 [details] [associations]
            symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
            "vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
            evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
            PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
            SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
            GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
            PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
            UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
            PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
            KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
            HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
            ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
            Uniprot:Q9SQV1
        Length = 1088

 Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 38/172 (22%), Positives = 76/172 (44%)

Query:     4 TATATQSVRL---DIL-KALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRF 59
             TAT  + VR    D+L   +++    V E + ++   +Y  +    E  +++ Q+++ + 
Sbjct:   619 TATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQE 678

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
             +    II+C +K  C  ++  + +      V  H      +R  V  ++ +G   ++ AT
Sbjct:   679 RGSKVIIFCSTKRLCDHLARSVGRH--FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171
                  G+D  D+R VI+      +E Y    GR GR     V    + ++D+
Sbjct:   737 DVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDW 788


>FB|FBgn0263231 [details] [associations]
            symbol:bel "belle" species:7227 "Drosophila melanogaster"
            [GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
            "ATP-dependent helicase activity" evidence=ISS] [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
            development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
            [GO:0016442 "RNA-induced silencing complex" evidence=IDA]
            [GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005875 "microtubule associated complex" evidence=IDA]
            [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
            "regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
            sister chromatid segregation" evidence=IMP] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
            GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
            GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
            GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
            GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
            RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
            SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
            EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
            UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
            OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
            NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
        Length = 798

 Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
 Identities = 32/117 (27%), Positives = 50/117 (42%)

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
             KD   +I+  +K     +  FL Q C       H     ++R    + + +GD  I+ AT
Sbjct:   558 KDSLTLIFVETKKGADSLEEFLYQ-CNHPVTSIHGDRTQKEREEALRCFRSGDCPILVAT 616

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176
                  G+D P V+ VI+  L   +E Y    GR GR     V    + +K+  R +C
Sbjct:   617 AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN--RNIC 671


>POMBASE|SPBC543.06c [details] [associations]
            symbol:dbp8 "ATP-dependent RNA helicase Dbp8
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
            InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
            Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
            SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
            GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
            RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
            EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
            NextBio:20802183 Uniprot:Q9HGM5
        Length = 453

 Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
 Identities = 40/182 (21%), Positives = 80/182 (43%)

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             II+ +++    E+   + +  +++    H+ +  R+R+    ++     +I+ AT     
Sbjct:   262 IIF-VNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320

Query:   125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGF 184
             G+D P V+ VI+  L +  + Y    GR  R       I +  ++D   +V  + +  G 
Sbjct:   321 GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVD-LVHAIEDRVGT 379

Query:   185 KSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESF-DRKACKNG----SNPCDNCLK 239
             K   ++       KM +Y ++  + +RQ  LE     F +R+  +N     +N   N LK
Sbjct:   380 KLSEYEHV--SENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNKLK 437

Query:   240 TS 241
              S
Sbjct:   438 NS 439


>ASPGD|ASPL0000037981 [details] [associations]
            symbol:AN2932 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] InterPro:IPR000629
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
            PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
            PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
            Uniprot:Q5B948
        Length = 398

 Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
 Identities = 48/187 (25%), Positives = 78/187 (41%)

Query:     3 LTATATQSVRLDILKALRIP-HALVLETSFDRPNLK--YEVIGKSKEALKQIGQLIKDRF 59
             L+AT  Q V     K +R P   LV +       +K  Y  + K +  L  +  L +   
Sbjct:   204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVT 263

Query:    60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
               Q  +I+C ++ +   +++ L  +        H  +   QR V+ K++ +G  +++ AT
Sbjct:   264 ITQA-VIFCNTRRKVDWLTDKLTAR-DFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIAT 321

Query:   120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179
                  GID   V  VI+  L  + E+Y    GR GR     V I      D    V M+R
Sbjct:   322 DLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD----VRMMR 377

Query:   180 NGQGFKS 186
               + F S
Sbjct:   378 EIEQFYS 384


>UNIPROTKB|P54475 [details] [associations]
            symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
            RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
            [GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
            GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
            EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
            SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
            GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
            HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
            BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
        Length = 438

 Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
 Identities = 47/215 (21%), Positives = 91/215 (42%)

Query:     1 MALTATATQSVRLDILKALRIP-HALVLETSFDRPNLKYEVI-GKSKEALKQIGQLIKDR 58
             +  +AT  + ++  + K +  P +A V         +++ +I  K ++  K +  ++   
Sbjct:   184 LVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMS-H 242

Query:    59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
                  GI++  +KN    ++ +L  K  +K    H GL  R+R  V K+ +  +   + A
Sbjct:   243 LNPYLGIVFANTKNTADHIAQYLTGK-GMKIGLLHGGLTPRERKKVMKQINDLEFTYIIA 301

Query:   119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
             T     GID   V  VI+  L   ++ Y    GR  R       + +Y+  D   +V + 
Sbjct:   302 TDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLE 361

Query:   179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQT 213
             + G  F  E  +    + KK      Q+ + R++T
Sbjct:   362 KMGIEF--EYLELEKGEWKKGDD--RQRRKKRKKT 392


>UNIPROTKB|E3W980 [details] [associations]
            symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
            Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
            HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
            SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
            ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
        Length = 1034

 Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
 Identities = 42/177 (23%), Positives = 80/177 (45%)

Query:    14 DILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLI---------KDRFKDQCG 64
             D LK +   H + L T    PN    V   SK+  + + ++I         K + K++C 
Sbjct:   490 DTLKKMDPDHLVALVTEVI-PNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCE 548

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             +I  L       +   L +       Y+H+GL + +R ++++ + TG + +   T     
Sbjct:   549 VIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAA 608

Query:   125 GIDKPDVRFVIHNT-LSKSI---ESYYQESGRAGRDNLPSV--CIVLYQKKDFSRVV 175
             G++ P  R ++    ++K       Y Q  GRAGR  + ++   I++ Q+KD  +V+
Sbjct:   609 GVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVL 665


>UNIPROTKB|Q8TDG4 [details] [associations]
            symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
            GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
            EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
            IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
            RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
            SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
            DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
            Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
            UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
            GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
            neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
            OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
            NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
            Uniprot:Q8TDG4
        Length = 1101

 Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
 Identities = 42/177 (23%), Positives = 80/177 (45%)

Query:    14 DILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLI---------KDRFKDQCG 64
             D LK +   H + L T    PN    V   SK+  + + ++I         K + K++C 
Sbjct:   557 DTLKKMDPDHLVALVTEVI-PNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCE 615

Query:    65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
             +I  L       +   L +       Y+H+GL + +R ++++ + TG + +   T     
Sbjct:   616 VIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAA 675

Query:   125 GIDKPDVRFVIHNT-LSKSI---ESYYQESGRAGRDNLPSV--CIVLYQKKDFSRVV 175
             G++ P  R ++    ++K       Y Q  GRAGR  + ++   I++ Q+KD  +V+
Sbjct:   676 GVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVL 732


>TIGR_CMR|GSU_0189 [details] [associations]
            symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
            "ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
            "RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
            PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
            SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
            PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
            InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
            ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
            PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
            Uniprot:Q74GQ7
        Length = 460

 Score = 112 (44.5 bits), Expect = 0.00083, P = 0.00083
 Identities = 37/147 (25%), Positives = 71/147 (48%)

Query:    38 YEV-IGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGL 96
             YEV  G+  EA+++I       ++ +  +I+C +K EC EV+N L  +     +  H  L
Sbjct:   222 YEVDSGQRIEAVERI----LGHYRPESALIFCNTKLECQEVANALAVR-GYAALAIHGDL 276

Query:    97 AARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD 156
               R+R  V  ++      ++ AT     G+D  ++  VI+  L+++ E +    GR GR 
Sbjct:   277 DQRERDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRA 336

Query:   157 NLPSVCIVLYQKKDFSRVVCMLRNGQG 183
                 + + L   ++ SR++  + +  G
Sbjct:   337 GERGLAVSLVTPRE-SRLIAAIADVPG 362


>FB|FBgn0014189 [details] [associations]
            symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
            melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
            [GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
            "polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
            helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
            activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0005875 "microtubule
            associated complex" evidence=IDA] InterPro:IPR001650
            InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
            SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
            EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
            GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
            PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
            InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
            KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
            RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
            UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
            IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
            PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
            EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
            CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
            OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
            Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
        Length = 424

 Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
 Identities = 37/178 (20%), Positives = 79/178 (44%)

Query:     1 MALTATATQSVRLDILKALRIPHALVL--ETSFDRPNLKYEVIG-KSKEALKQIGQLIKD 57
             M  +AT ++ +R    K ++ P  + +  E       L+   +  K  E  K++ +L+ D
Sbjct:   222 MMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELL-D 280

Query:    58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
               +    +I+  S   CV +S  L ++     +  H G+   +R+   +++     +I+ 
Sbjct:   281 VLEFNQVVIFVKSVQRCVALSQLLTEQ-NFPAIGIHRGMTQEERLNRYQQFKDFQKRILV 339

Query:   118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
             AT  FG G+D   V  V +  + +  ++Y     RAGR     + I     ++ ++++
Sbjct:   340 ATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 397


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       242   0.00096  113 3  11 22  0.38    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  168
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.57u 0.10s 20.67t   Elapsed:  00:00:01
  Total cpu time:  20.59u 0.10s 20.69t   Elapsed:  00:00:01
  Start:  Tue May 21 02:31:20 2013   End:  Tue May 21 02:31:21 2013
WARNINGS ISSUED:  1

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