BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026168
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 209/240 (87%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATAT+SV D+LK+LRIP A VL+ SFDR NLKYEVI K+KE LKQ+ +L++DRFK
Sbjct: 367 MALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFK 426
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
DQ GI+YCLSK+ECV+V+ FLN+KCK+KTVYYHAG+ A+QRV VQ+KW TG+V+IVCATI
Sbjct: 427 DQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATI 486
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGIDK DVRFVIHNTLSK++ESYYQESGRAGRD L + CI LYQKKDFSRVVCMLRN
Sbjct: 487 AFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRN 546
Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240
GQG + FK+AMAQAKKMQQYCE K ECRRQ LLE+FGESFDR CK+ NPCDNC ++
Sbjct: 547 GQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNCERS 606
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 216 bits (550), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 4/237 (1%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATA++ VR+DI+ L + + L+ SF+R NL YEV K+K + +I +K RFK
Sbjct: 840 IALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFK 899
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+Q GIIYC SK C + S + Q+ IK YYHAG+ +R+ VQK W ++Q++CAT+
Sbjct: 900 NQTGIIYCHSKKSCEQTSAQM-QRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATV 958
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGIDKPDVRFV H T+ +++E YYQE+GRAGRD S CI + +D + M++
Sbjct: 959 AFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQK 1018
Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
+ E + + + +++ YC+ +CRR+ +L +F E FD K C CDNC
Sbjct: 1019 DKNLDRENKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSKLCHKN---CDNC 1072
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 153/250 (61%), Gaps = 17/250 (6%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATAT SV+ D+++AL + + +V SF+RPNL Y V+ K+K+ L+ I + IK+
Sbjct: 613 LALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHF 672
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
D+CGIIYCLS+ +C +VS L Q+ K +YH + QR +Q +W ++ I+CAT+
Sbjct: 673 DECGIIYCLSRMDCEKVSERL-QEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATV 731
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGI+KPDVRFVIH++L KSIE Y+QE GRAGRD S C++ Y D+ RV M+
Sbjct: 732 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQ 791
Query: 181 G--------QGFKSEA-----FKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC 227
G G+ A +T +M +YCE + ECRR L H GE FD C
Sbjct: 792 GGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEKFDSTNC 851
Query: 228 KNGSNPCDNC 237
K CDNC
Sbjct: 852 KKT---CDNC 858
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 153/250 (61%), Gaps = 17/250 (6%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATAT SV+ D+++AL + + +V SF+RPNL Y V+ K+ + L+ I + I++
Sbjct: 629 LALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHF 688
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
D+CGIIYCLS+ +C +V+ L + K +YH + +R VQK+W ++ I+CAT+
Sbjct: 689 DECGIIYCLSRMDCEKVTEAL-RVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATV 747
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGI+KPDVRFVIH++L KSIE Y+QE GRAGRD S C++ Y D+ RV M+
Sbjct: 748 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQ 807
Query: 181 G--------QGFKSEAFKTAMAQAK-----KMQQYCEQKAECRRQTLLEHFGESFDRKAC 227
G G+ +A M + +M YCE + +CRR L H GE FD C
Sbjct: 808 GGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCENEVDCRRFLQLVHLGEKFDSTNC 867
Query: 228 KNGSNPCDNC 237
KN CDNC
Sbjct: 868 KNT---CDNC 874
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 210 bits (535), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 147/240 (61%), Gaps = 8/240 (3%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATAT + D L++ ++ + +SF R NLKY++I K+ +L + + +K +
Sbjct: 409 IALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYP 468
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GI+YCLS+ EC V L K + YHAGL RV VQ+ W ++CATI
Sbjct: 469 GKSGIVYCLSRKECETVQMMLT-KAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATI 527
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGIDKPDVRFVIH +L KSIE YYQE+GRAGRD +PS C++LY D R+ M+
Sbjct: 528 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 587
Query: 181 GQ---GFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
G G +S + ++ YCE + CRR+ L+EHFGE +D ++C+N PCD C
Sbjct: 588 GNTTTGVRSMHLNNVL----QVVAYCENVSVCRRKMLVEHFGEVYDEQSCRNSKTPCDIC 643
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 152/237 (64%), Gaps = 5/237 (2%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATA + V+ DI+ LR+ + L L++SF+RPNL YE+ K K+ ++ + I +
Sbjct: 683 MALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK-KDLYTELYRFISNGHL 741
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GIIYCLS+ C +V+ L +K +YHAGL +R +Q +W +G +I+ ATI
Sbjct: 742 HESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATI 801
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMG+DK DVRFVIH++ KS+E YYQE+GRAGRD P+ CI+ Y KD ++ +
Sbjct: 802 AFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMS 861
Query: 181 GQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
G G +E + +++ Q+CE K +CRR+ +L +FGE+FD+ C+ G CD C
Sbjct: 862 GDG-DAETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDKVHCRKG---CDIC 914
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/242 (46%), Positives = 146/242 (60%), Gaps = 5/242 (2%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK-SKEALKQIGQLIKDRF 59
MALTATA V+ DIL L++ + SF+R NLKYEV+ K K + IK
Sbjct: 779 MALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHH 838
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW-HTGDVQIVCA 118
+ GIIYCLS++EC +++ L QK + + YHAGLA R VQ KW + D Q++CA
Sbjct: 839 PNDSGIIYCLSRHECDTMADTL-QKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICA 897
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
TIAFGMGIDKPDVR+VIH +L KS+E YYQESGRAGRD S C++ Y D +R+ ++
Sbjct: 898 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLI 957
Query: 179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGE-SFDRKACKNGSN-PCDN 236
+ + S +T M YCE ECRR LL +FGE +F+ CK + CDN
Sbjct: 958 QMEKDGNSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACDN 1017
Query: 237 CL 238
CL
Sbjct: 1018 CL 1019
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 149/244 (61%), Gaps = 15/244 (6%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI---GKSKEALKQIGQLIKD 57
+ LTATAT +V D+ K L IP A+V F+R NL Y+V+ G E +++I + IK
Sbjct: 246 LGLTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKR 305
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
+F + GIIYCLS+N+C +++ L I+ +YHA + R +KW +G++Q++
Sbjct: 306 KFSGKTGIIYCLSRNDCEKLAKSLKANG-IRAKHYHAYMEPVDRSAAHQKWVSGEIQVIV 364
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFVIH++L KSIE+YYQESGRAGRD LP+ CI+ Y+ D + M
Sbjct: 365 ATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSM 424
Query: 178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
++ Q T +A M +Y CRR L EHF E+++ C+ CD C
Sbjct: 425 IQQEQ--------TGIANLYNMVRYASDTVTCRRVKLAEHFEEAWEPSWCQ---KQCDVC 473
Query: 238 LKTS 241
K+S
Sbjct: 474 EKSS 477
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 201 bits (511), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 146/242 (60%), Gaps = 7/242 (2%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSK-EALKQIGQLIKDRF 59
+ALTATAT VRLDIL L + + +SF+R NL+Y V+ K L I + I+ +
Sbjct: 897 IALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKP 956
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCK--IKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
+ GIIYCLS+ EC E S + CK ++ V YHAGL R QK W TG ++++C
Sbjct: 957 QHFSGIIYCLSRKECDETSKKM---CKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVIC 1013
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFV+H +L KSIE YYQE+GRAGRD + CI+ Y D R+ M
Sbjct: 1014 ATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKM 1073
Query: 178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC-KNGSNPCDN 236
L + + + K + ++ YCE +CRR L++FGE F + C +N CDN
Sbjct: 1074 LDSDKALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDN 1133
Query: 237 CL 238
C+
Sbjct: 1134 CI 1135
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 190 bits (483), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK-SKEALKQIGQLIKDRF 59
MALTATA V+ DIL L+I V SF+R NLKY V+ K K+ + I+
Sbjct: 827 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 886
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
GIIYCLS+ EC +++ L Q+ + + YHAGL+ R VQ+KW D Q++CA
Sbjct: 887 PYDSGIIYCLSRRECDTMADTL-QRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICA 945
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS---RVV 175
TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD S C++ Y D + R++
Sbjct: 946 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1005
Query: 176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSN-P 233
M ++G E T M YCE ECRR LL +FGE+ F+ CK +
Sbjct: 1006 MMEKDGNHHTRE---THFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 234 CDNCLKT 240
CDNC KT
Sbjct: 1063 CDNCCKT 1069
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 144/247 (58%), Gaps = 11/247 (4%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK-SKEALKQIGQLIKDRF 59
MALTATA V+ DIL L+I V SF+R NLKY V+ K K+ + I+
Sbjct: 835 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHH 894
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCA 118
GIIYCLS+ EC +++ L Q+ + + YHAGL+ R VQ KW D Q++CA
Sbjct: 895 PYDSGIIYCLSRRECDTMADTL-QREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICA 953
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS---RVV 175
TIAFGMGIDKPDVRFVIH +L KS+E YYQESGRAGRD S C++ Y D + R++
Sbjct: 954 TIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 1013
Query: 176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGE-SFDRKACKNGSN-P 233
M ++G E T + M YCE ECRR LL +FGE F+ CK +
Sbjct: 1014 MMEKDGNYHTKE---THVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1070
Query: 234 CDNCLKT 240
CDNC KT
Sbjct: 1071 CDNCCKT 1077
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 140/239 (58%), Gaps = 12/239 (5%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI---GKSKEALKQIGQLIKD 57
+ LTATAT +V D+ L I AL F+R NLKY+V+ G E ++I + IK
Sbjct: 269 LGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKR 328
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
F Q GIIYCLS+N+C +V+ L IK +YHA + R + W +G +Q++
Sbjct: 329 DFAGQTGIIYCLSRNDCEKVAKALKSHG-IKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 387
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKP+VRFVIH++L KSIE+YYQESGRAGRD P+ CI+ Y+ D + M
Sbjct: 388 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSM 447
Query: 178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
++ +T + M +Y + CRR L EHF E+++ C+ + C+N
Sbjct: 448 VQQE--------RTGIQNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCEN 498
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 187 bits (476), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 145/246 (58%), Gaps = 19/246 (7%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
+ LTATAT V D K L I SF+RPNL YEV K +++ ++ I +LI
Sbjct: 251 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 310
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
R+K Q GIIYC S+ + +V+ L Q I YHA L + V +KW ++Q+V
Sbjct: 311 RYKGQSGIIYCFSQKDSEQVTVSL-QNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 369
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y D R+ M
Sbjct: 370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 429
Query: 178 LRNGQGFKSEAFKTAMAQAK--KMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
+ + Q K +M YC+ ++CRR + +HF E ++ +AC + CD
Sbjct: 430 V----------VMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEAC---NKMCD 476
Query: 236 NCLKTS 241
NC K S
Sbjct: 477 NCCKDS 482
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 187 bits (476), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 147/245 (60%), Gaps = 18/245 (7%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS---KEALKQIGQLIKD 57
+ALTATATQ V+ D+++ L IP + +S +RPNL Y V KS K + +I + I++
Sbjct: 249 VALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRE 308
Query: 58 RF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
+ ++ GI+YC S+ EC +++ L ++ I YYHA + A R V +W +Q++
Sbjct: 309 SYSNNESGIVYCFSRKECEQIAGDLRERG-ISADYYHADMDANMREKVHMRWSKNKLQVI 367
Query: 117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176
T+AFGMGI+KPDVRFVIH++LSKS+E+YYQESGRAGRD LPS CI+ ++ D R
Sbjct: 368 VGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSS 427
Query: 177 MLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDN 236
M+ F + + + +YC+ K +CRR HFGE ++ + CDN
Sbjct: 428 MV-----FYE---YSGLQNLYDIVRYCQSKTKCRRSAFFRHFGE-----PSQDCNGMCDN 474
Query: 237 CLKTS 241
C +S
Sbjct: 475 CALSS 479
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 19/246 (7%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK---SKEALKQIGQLIKD 57
+ LTATAT V D K L I SF+RPNL YEV K +++ ++ I +LI
Sbjct: 251 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 310
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
R+K Q GIIYC S+ + +V+ L + I YHA L + V +KW ++Q+V
Sbjct: 311 RYKGQSGIIYCFSQKDSEQVTVSL-RNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 369
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD++ + CI+ Y D R+ M
Sbjct: 370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 429
Query: 178 LRNGQGFKSEAFKTAMAQAK--KMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
+ + Q K +M YC+ ++CRR + +HF E ++ +AC + CD
Sbjct: 430 V----------VMENVGQQKLYEMVSYCQNISKCRRLLMAQHFDEVWNSEAC---NKMCD 476
Query: 236 NCLKTS 241
NC K S
Sbjct: 477 NCCKDS 482
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 141/243 (58%), Gaps = 9/243 (3%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK-SKEALKQIGQLIKDRF 59
MALTATA V+ DI L + V SF+R NLKY+V+ K K+ + IK
Sbjct: 557 MALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYH 616
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW-HTGDVQIVCA 118
GIIYCLS++EC + L QK + + YHAGL R +VQKKW + Q++CA
Sbjct: 617 PHDSGIIYCLSRHECDTTAAIL-QKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 675
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
TIAFGMGIDKPDVR+VIH +L KS+E YY ESGRAGRD S C++ Y D +R+ ++
Sbjct: 676 TIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 735
Query: 179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES-FDRKACKNGSNP---C 234
+ S +T M YCE +CRR LL +FGE+ F+ CK+ +P C
Sbjct: 736 LMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKD--HPEVIC 793
Query: 235 DNC 237
DNC
Sbjct: 794 DNC 796
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 141/242 (58%), Gaps = 15/242 (6%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKD 57
+ LTATAT V D K L + L SF+RPNL YEV K A ++ I LI
Sbjct: 251 IGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLING 310
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
R+K + GIIYC S+ + +V+ L QK ++ YHA + R V +W ++Q+V
Sbjct: 311 RYKGKSGIIYCFSQKDSEQVTISL-QKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVV 369
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+ + CI+ Y D R+ M
Sbjct: 370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSM 429
Query: 178 LRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
+ + + + +M YC+ ++CRR + +HF E ++ AC + CDNC
Sbjct: 430 VVMENVGQQKLY--------EMVSYCQNISKCRRALIAQHFDEVWNADAC---NKMCDNC 478
Query: 238 LK 239
K
Sbjct: 479 CK 480
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 141/244 (57%), Gaps = 19/244 (7%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEA---LKQIGQLIKD 57
M LTATAT V D+ K L + L SF+RPNL YEV K A + I +LI
Sbjct: 251 MGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLING 310
Query: 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117
R+K Q GIIYC S+ + +++ L QK I YHA + + V +W ++Q+V
Sbjct: 311 RYKGQSGIIYCFSQKDSEQITISL-QKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVV 369
Query: 118 ATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177
AT+AFGMGIDKPDVRFVIH+++SKS+E+YYQESGRAGRD+ + CI+ Y D R+ M
Sbjct: 370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSM 429
Query: 178 LRNGQGFKSEAFKTAMAQAK--KMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
+ + Q K +M YC+ ++CRR + +HF E ++ AC + CD
Sbjct: 430 V----------VMENVGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVWNADAC---NKMCD 476
Query: 236 NCLK 239
NC K
Sbjct: 477 NCCK 480
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 8/239 (3%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS--KEALKQIGQLIKDR 58
+ALTATA V+ D++ +L + + LVL++SF+RPN+ YEV K A +G L+K
Sbjct: 195 LALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKS- 253
Query: 59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
+ C IIYCL + C ++S L+ I + YHAGL ++ R V W + QI+ A
Sbjct: 254 CGNICAIIYCLERTTCDDLSVHLSS-IGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVA 312
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178
T+AFGMGIDK DVR V H + KS+ES+YQESGRAGRD LPS ++ Y D ++ +L
Sbjct: 313 TVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL 372
Query: 179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
RN + KS + K + +++ YCE CRR+ +LE FGE F + CK CD C
Sbjct: 373 RNSENKKSSSSKKPTSDFEQIVTYCEGSG-CRRKKILESFGEEFPVQQCKKT---CDAC 427
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 15/240 (6%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATA + R DIL+ L + V SFDRPN++Y ++ K K ++Q+ + + + K
Sbjct: 191 MALTATADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFK-PMEQLCRFVLGQ-K 248
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GIIYC S+++ ++ L K + YHAGL QR VQ+ + +VQ+V ATI
Sbjct: 249 GKSGIIYCNSRSKVERIAESLRNKG-VSAQAYHAGLETSQREQVQRAFQRDNVQVVVATI 307
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGI+K +VRFV+H L +SIESYYQE+GRAGRD+LP+ ++ Y+ D++ + +L
Sbjct: 308 AFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLE 367
Query: 181 GQGFKSEAFKTAMAQAKKMQQYCE--QKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
K E+ + + +A K+Q E + CRR LL +FGE +K C+N CD CL
Sbjct: 368 ----KPESPQRQI-EALKLQAIGEFAESQTCRRLVLLNYFGEH-QQKPCQN----CDICL 417
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 13/239 (5%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATA + R DI++ L + L+ +SFDRPN++Y ++ K K L Q+ + ++++ +
Sbjct: 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFK-PLDQLMRYVQEQ-R 235
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GIIYC S+ + + + L K I YHAGL R VQ+K+ D+QIV AT+
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSK-GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV-VCMLR 179
AFGMGI+KP+VRFV+H + ++IESYYQE+GRAGRD LP+ ++ Y D + + C+
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354
Query: 180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
QG + + + M + E + CRR LL +FGE ++ C N CD CL
Sbjct: 355 KPQGQLQDIERHKL---NAMGAFAEAQT-CRRLVLLNYFGEG-RQEPCGN----CDICL 404
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 13/239 (5%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATA + R DI++ L + L+ +SFDRPN++Y ++ K K L Q+ + ++++ +
Sbjct: 178 MALTATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFK-PLDQLMRYVQEQ-R 235
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GIIYC S+ + + + L Q I YHAGL RV VQ+K+ D+QIV AT+
Sbjct: 236 GKSGIIYCNSRAKVEDTAARL-QSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATV 294
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV-VCMLR 179
AFGMGI+KP+VRFV+H + ++IESYYQE+GRAGRD LP+ ++ Y D + + C+
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354
Query: 180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238
G + + + M + E + CRR LL +FGE ++ C N CD CL
Sbjct: 355 KPAGQLQDIERHKL---NAMGAFAEAQT-CRRLVLLNYFGEG-RQEPCGN----CDICL 404
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 133/239 (55%), Gaps = 14/239 (5%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATAT V DI K L++ ++ SFDRPNL EV KSK I +I +++
Sbjct: 182 LALTATATNIVAKDICKVLQLKTNEPIKASFDRPNLYLEVRTKSKNPANDIVPII-NKYP 240
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+Q IIYCL+K E ++++ L K+ YHAGL+ + + ++IV ATI
Sbjct: 241 NQSVIIYCLTKKETQKIADILTVH-KVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATI 299
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF--SRVVCML 178
AFGMGI+KPDVR VIH K+IE YYQE GRAGRD S C Y +DF R
Sbjct: 300 AFGMGINKPDVRVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQ 359
Query: 179 RNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
N ++ KT +A ++M++Y + CRR+ LLE+F E K + CDNC
Sbjct: 360 NNNPNYQ----KTQLALLEQMKKYVTLRT-CRRKILLEYFDEE-----TKEKCDFCDNC 408
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 18/239 (7%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
MALTATA + + DIL+ L + + SFDRPN++Y + K K ++Q+ + + + K
Sbjct: 181 MALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYK-PMEQLTRFVLAQ-K 238
Query: 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120
+ GIIYC S+N+ ++ L K + YHAG+ R VQ+ + +VQ+V ATI
Sbjct: 239 GKSGIIYCNSRNKVERIAESLRNKG-VSAAAYHAGMETAIRERVQQDFQRDNVQVVVATI 297
Query: 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180
AFGMGI+K +VRFV H L +SIESYYQE+GRAGRD+LP+ ++ Y+ D++ + +L
Sbjct: 298 AFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLE 357
Query: 181 GQGFKSEAFKTAMAQAK--KMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
K E + + Q K + ++ E + CRR LL +FGE + PC+NC
Sbjct: 358 ----KPETPQRQIEQHKLEAIGEFAESQT-CRRLVLLNYFGE--------HRQTPCNNC 403
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 134/242 (55%), Gaps = 10/242 (4%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-DRF 59
+ALTATAT VR D++ LR+ L+ TSFDR NL Y + SK+ + +G +K D
Sbjct: 382 IALTATATVRVRDDVIANLRLRKPLITTTSFDRKNL-YISVHSSKDMAEDLGLFMKTDEV 440
Query: 60 KDQ----CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
K + IIYC +K + V+ N + ++ +++ +YHAGL QR + +
Sbjct: 441 KGRHFGGPTIIYCQTK-QMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITT 499
Query: 116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
+ AT+AFGMGIDKPDVR VIH +IESYYQE GRAGRD PS+C V + KD + +
Sbjct: 500 IVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIK 559
Query: 176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCD 235
LRN Q K E + ++++ CRR LL+HF S+ + ++ CD
Sbjct: 560 FKLRNSQQ-KEEVVENLTMMLRQLELVL-TTVGCRRYQLLKHFDPSYAKPPTMQ-ADCCD 616
Query: 236 NC 237
C
Sbjct: 617 RC 618
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 139/256 (54%), Gaps = 24/256 (9%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+ALTATA+ S+R DI K+L + + V TSFDRPNL +V K+ + Q + K
Sbjct: 641 VALTATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFL---IK 697
Query: 61 DQCG---------IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111
Q G I+YC ++ +V+ L K I YHAG+ +QR V ++
Sbjct: 698 KQQGSGWEFEGATIVYCPTRKTSEQVTAEL-IKLGIACGTYHAGMGIKQRREVHHRFMRD 756
Query: 112 DVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD- 170
++ V AT+AFGMGI+KPD+R VIH K +ESYYQE GRAGRD LPS C L+ + D
Sbjct: 757 EIHCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADM 816
Query: 171 -FSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN 229
F+R + +GF+ K KM++Y + CRR+ +L HF + RKA
Sbjct: 817 NFNRHMLGEIPNKGFREYKLKMLT----KMEKYL-NSSTCRRKIILSHFEDKQLRKASSG 871
Query: 230 --GSNP-CDNCLKTSL 242
G+ CDNC KT L
Sbjct: 872 IMGTEKCCDNC-KTRL 886
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 140/256 (54%), Gaps = 29/256 (11%)
Query: 1 MALTATATQSVRLDILKALRIPHAL-VLETSFDRPNLKYEV---------IGKSKE-ALK 49
+ALTATAT V+ D+ AL + + + +T R NL Y+V G K+ LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKW 108
+GQ D+ CGI+YC ++ C +++ L+ C+ + YHAGL A +R +VQ W
Sbjct: 249 ALGQEA-DKGLSGCGIVYCRTREACEQLAIELS--CRGVNAKAYHAGLKASERTLVQNDW 305
Query: 109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168
V ++ ATI+FGMG+DK +VRFV H ++KS+ YYQESGRAGRD PS C + Y +
Sbjct: 306 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 365
Query: 169 KDFSRV-------VCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGES 221
D +V V L+ +G K+ T MA + +CE+ CR + ++FG++
Sbjct: 366 NDRDQVSFLIRKEVAKLQEKRGNKASDKATIMA-FDALVTFCEELG-CRHAAIAKYFGDA 423
Query: 222 FDRKACKNGSNPCDNC 237
AC G CD+C
Sbjct: 424 L--PACAKG---CDHC 434
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 134/244 (54%), Gaps = 11/244 (4%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQ-LIKDRF 59
+ALTATA+ S+R DI++ L + + + T FDRPNL EV K+ L+ + L+K
Sbjct: 700 VALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSS 759
Query: 60 K---DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116
+ IIYC S+ +V+ L +K + YHAG++ R + ++ ++Q V
Sbjct: 760 HWEFEGPTIIYCPSRKMTQQVTGEL-RKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCV 818
Query: 117 CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176
ATIAFGMGI+K D+R VIH K +ESYYQE GRAGRD L S C VL+ D +
Sbjct: 819 IATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRH 878
Query: 177 MLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP- 233
+L + K +K M KM++Y + CRRQ +L HF + +KA G+
Sbjct: 879 LLTEIRNEKFRLYKLKM--MAKMEKYL-HSSRCRRQIILSHFEDKQVQKASLGIMGTEKC 935
Query: 234 CDNC 237
CDNC
Sbjct: 936 CDNC 939
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 137/241 (56%), Gaps = 13/241 (5%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI-GKSKEALKQIGQLIKDRF 59
MALTATAT V DI K L I + T F R NL ++V+ G++K+ I + +++
Sbjct: 172 MALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRF--IDEYVQNN- 228
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
+ + GI+Y ++ E + L ++ +++ YH GLA R Q+++ ++Q++ AT
Sbjct: 229 RHEAGIVYTATRKEADRIYERL-KRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVAT 287
Query: 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179
AFGMGIDK ++RFV+H + K +ESYYQE+GRAGRD L S C++L+ +D +V
Sbjct: 288 SAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDI--MVQRFL 345
Query: 180 NGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLK 239
Q E K + + ++M YC + +C ++ +L +FGE + AC C NC
Sbjct: 346 IEQSEHEEKQKQDLKKLRQMVDYCHTE-DCLQRFILMYFGEK-EPDAC----GQCGNCTD 399
Query: 240 T 240
T
Sbjct: 400 T 400
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 12/245 (4%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFK 60
+AL+ATA+ S+R DI+ L + + T FDRPNL EV K+ L+ + + +
Sbjct: 664 IALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKAS 723
Query: 61 -----DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115
+ IIYC S+ +V+ L K + YHAG+ +R V ++ ++Q
Sbjct: 724 SAWEFEGPTIIYCPSRKMTEQVTAELG-KLNLACRTYHAGMKISERKDVHHRFLRDEIQC 782
Query: 116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVV 175
V AT+AFGMGI+K D+R VIH K +ESYYQE GRAGRD L S C +L+ DF+
Sbjct: 783 VVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSR 842
Query: 176 CMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKN--GSNP 233
+L K +K M KM++Y ++CRR+ +L HF + +KA + G+
Sbjct: 843 NLLIEIHDEKFRLYKLKMMV--KMEKYL-HSSQCRRRIILSHFEDKCLQKASLDIMGTEK 899
Query: 234 -CDNC 237
CDNC
Sbjct: 900 CCDNC 904
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPN--LKYEVIGKSKEALKQIGQLIKDR 58
+ALTATAT+ D++ L + HA+ S +RPN L+ E + E + ++ QL+++
Sbjct: 168 LALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENL 227
Query: 59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118
GI+YC ++ E++ + K + +YH GL + R+++Q+++ + ++C
Sbjct: 228 --QGPGIVYCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICC 285
Query: 119 TIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171
T AFGMG+DKPD+R+VIH L ++ E++ QE GRAGRD PSV I+L DF
Sbjct: 286 TNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDF 338
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 22/179 (12%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKI--KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF 122
IIY ++ E V ++ +L C + K Y+A L + V + +H +Q+V ATIAF
Sbjct: 501 IIYVPTRKESVNIAKYL---CGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAF 557
Query: 123 GMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQ 182
GMGIDK +VR +IH +S+E+YYQE+GRAGRD + C VLY D SR +L
Sbjct: 558 GMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAEC-VLY--ADLSRAPTLL---- 610
Query: 183 GFKSEAFKTAMAQAKKMQ----QYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237
S K QA KM +Y ++CR + L+E+FGE F K C N CD C
Sbjct: 611 --PSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKC----NSCDVC 663
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 1 MALTATATQSVRLDILKALRIP-HALVLETSFDRPNLKYEV 40
MALTATAT +V+ DIL++L + ++ TSF RPNL++ V
Sbjct: 329 MALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSV 369
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 92.4 bits (228), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 37/195 (18%)
Query: 1 MALTATATQSVRLDILKALRI------------PHALVLETSFDRPNLKYEVIGKSKEAL 48
+ LTATAT+ D+ + L + P L L S DR + +AL
Sbjct: 638 LGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDR---------DTDQAL 688
Query: 49 KQIGQLIKDRFKD-QCGIIYCLSKNECVEVSNFLN-------------QKCKIKTVYYHA 94
+ Q RF++ IIYC + + ++ L + K YHA
Sbjct: 689 LTLLQ--GKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHA 746
Query: 95 GLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAG 154
G+ +R+R VQ+ + G +++V AT+AFGMG+D+PDVR V+H L S ESY Q GRAG
Sbjct: 747 GMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAG 806
Query: 155 RDNLPSVCIVLYQKK 169
RD P+ C + Q +
Sbjct: 807 RDGQPAHCHLFLQPQ 821
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALK--QIGQLIKDRF 59
A TATA + + I++ L + + S RP L +V E + Q+ + +
Sbjct: 179 AFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLKHL 238
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
++ G+IY ++ + ++ +L ++ + YH GL QR +++KW TG + V T
Sbjct: 239 QE-SGLIYVRTRTMAINLAQWLQER-GFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCT 296
Query: 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165
AFG+GIDKPD R+V+H + Y QE GRAGRD P+ C+ L
Sbjct: 297 NAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTL 342
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 91.7 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 15/177 (8%)
Query: 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-DRF 59
+ LTATAT+S D+ + L I L S + P + + +++ + + L++ DRF
Sbjct: 660 LGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRF 719
Query: 60 KD-QCGIIYCLSKN----------ECVE-VSNFLNQKCKIKTVY--YHAGLAARQRVVVQ 105
+ IIYC + C+ V + + C + + YHAG+++++R VQ
Sbjct: 720 RTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQ 779
Query: 106 KKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC 162
+ + G +++V AT+AFGMG+D+PDVR V+H L S ESY Q GRAGRD P+ C
Sbjct: 780 QAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHC 836
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 21/222 (9%)
Query: 15 ILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR-FKD-QCGIIYCLSKN 72
++ +L IP +++ S R N + V +K + L++ +K+ + I+YC +
Sbjct: 438 VMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQY 497
Query: 73 ECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR 132
E +S +L I YH+GL A+ RV +Q+ + + +++V AT+AFGMG+DK DV
Sbjct: 498 ETDMISKYLRDN-NINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVG 556
Query: 133 FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQG--------F 184
VIH ++ S+E Y QE GRAGRD S C + Y + ++ L + G F
Sbjct: 557 AVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRS-LAHSDGVDEYAVGKF 615
Query: 185 KSEAFKTAMAQAKKM--------QQYCEQKAECRRQTLLEHF 218
+ F T Q +K+ Q + K E QT+L H
Sbjct: 616 LTHVFSTETKQHEKICSLVIESASQKFDMKEEV-MQTILTHL 656
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
II+C +K E E+S N K H + +QR + K + G ++ AT
Sbjct: 442 IIFCETKKEAQELSQ--NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAAR 499
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ-KKDFSRVVCMLRNGQG 183
G+D P+V VI ++ K +ESY SGR GR VCI YQ K+++ V + G
Sbjct: 500 GLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIK 559
Query: 184 FKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDR 224
FK +A K + + + T + HF +S ++
Sbjct: 560 FKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEK 600
>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-3 PE=3 SV=1
Length = 614
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
KD +++CL K E V V FL++K IK H L QR + + +G ++ AT
Sbjct: 449 KDDRILVFCLYKKEAVRVEQFLSRKG-IKVASIHGDLRQDQRTRSLEAFKSGTTTVLVAT 507
Query: 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P+V+ VI+ T +IE Y GR GR I L+ + D
Sbjct: 508 DVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHD 558
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1
Length = 737
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123
II+C +K E++ +N K H +A QR + K + G +++ AT
Sbjct: 392 AIIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAA 449
Query: 124 MGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P+V VI ++ + +ESY SGR GR +CI YQ ++
Sbjct: 450 RGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRE 496
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
II+C +K + E+S N K H + +QR + K + G+ ++ AT
Sbjct: 514 IIFCETKKDAQELSQ--NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAAR 571
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P+V V+ + K +ESY SGR GR VCI YQ K+
Sbjct: 572 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKE 617
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1
Length = 734
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123
II+C +K E++ +N K H +A QR + K + G +++ AT
Sbjct: 389 AIIFCETKKNVTEMA--MNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAA 446
Query: 124 MGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P+V VI ++ + +ESY SGR GR +C+ YQ ++
Sbjct: 447 RGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRE 493
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
II+C +K + E+S N K H + +QR + K + G+ ++ AT
Sbjct: 438 IIFCETKKDAQELSQ--NTCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAAR 495
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P+V V+ + K +ESY SGR GR VCI YQ K+
Sbjct: 496 GLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKE 541
>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=dbp3 PE=3 SV=1
Length = 592
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
KD +++CL K E V +F+ QK + H L+ QR + + +G+ ++ AT
Sbjct: 427 KDDRILVFCLYKKEATRVESFIRQKG-FRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVAT 485
Query: 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P V+ VI+ T ++E Y GR GR + I L+ + D
Sbjct: 486 DVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHD 536
>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2
Length = 596
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT 119
KD +++CL K E V F+ QK + H L+ QR + + +G+ ++ AT
Sbjct: 431 KDDRILVFCLYKKEATRVEGFIRQKG-FRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVAT 489
Query: 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P V+ VI+ T ++E Y GR GR + I L+ + D
Sbjct: 490 DVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHD 540
>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP3 PE=3
SV=1
Length = 581
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
+++CL K E + NFL++K I+ H L QR + + +G ++ AT
Sbjct: 421 LVFCLYKKEATRIENFLSRKG-IRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATDVAAR 479
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR---VVCMLRNG 181
G+D P+V+ VI+ T +IE Y GR GR I + +D S +V +LR
Sbjct: 480 GLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAITFFTVEDKSHSGSLVNILRGA 539
>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DBP3 PE=3 SV=1
Length = 566
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 37 KYEVI---GKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYH 93
K EV+ GK + L+ + + K K+ +++CL K E V V L ++ I+ H
Sbjct: 425 KVEVVDPRGKEQRLLELLKEAQKGSAKNDRILVFCLYKKEAVRVEQNLERRG-IRVCSIH 483
Query: 94 AGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRA 153
L QR + + G ++ AT G+D P+V+ VI+ T +IE Y GR
Sbjct: 484 GDLRQDQRTRSLESFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRT 543
Query: 154 GRDNLPSVCIVLYQKKDFS 172
GR I L+ + D S
Sbjct: 544 GRAGKKGKAITLFTEHDKS 562
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis (strain RS)
GN=DBP3 PE=3 SV=2
Length = 515
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
+++CL K E + V F+ K K H ++ +R + + +G + ++ AT
Sbjct: 354 LVFCLYKKEAMRVERFIGSKG-FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAAR 412
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P V+ V++ T +IE Y GR GR + I L+ ++D
Sbjct: 413 GLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERD 458
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 28 ETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFK----DQCGIIYCLSKNECVEVSNFLN 82
ETS R N+ Y + + E L + L+K R K D II+C +K + + L+
Sbjct: 1378 ETSTARENIFYFLHPYDNTEFLLDLRTLMK-RTKVFEGDGRAIIFCRTKKDVEYIHRRLH 1436
Query: 83 QK---CKIKTVYYHAGLAARQRVVVQKKWHT--GDVQIVCATIAFGMGIDKPDVRFVIHN 137
Q Y ++ +R + + G +I+ AT AFG+GI+ VR V+H
Sbjct: 1437 QSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHY 1496
Query: 138 TLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
L S Y QE+GRAGRD ++ + Y+K D
Sbjct: 1497 GLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 28 ETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFK----DQCGIIYCLSKNECVEVSNFLN 82
ETS R N+ Y + + E L + L+K R K D II+C +K + + L+
Sbjct: 1559 ETSTARENIFYFLHPYDNTEFLLDLRTLMK-RTKVFEGDGRAIIFCRTKKDVEYIHRRLH 1617
Query: 83 QK---CKIKTVYYHAGLAARQRVVVQKKWHT--GDVQIVCATIAFGMGIDKPDVRFVIHN 137
Q Y ++ +R + + G +I+ AT AFG+GI+ VR V+H
Sbjct: 1618 QSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHY 1677
Query: 138 TLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
L S Y QE+GRAGRD ++ + Y+K D
Sbjct: 1678 GLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710
>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp3
PE=3 SV=1
Length = 503
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124
+++CL K E V V L K K H L +R + + TG ++ AT
Sbjct: 342 LVFCLYKKEAVRVERLLRSK-NFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAAR 400
Query: 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170
G+D P V+ VI+ T ++E Y GR GR I L+ + D
Sbjct: 401 GLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLFTEAD 446
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,158,960
Number of Sequences: 539616
Number of extensions: 3272190
Number of successful extensions: 9890
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 282
Number of HSP's that attempted gapping in prelim test: 8931
Number of HSP's gapped (non-prelim): 1157
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)