Query 026168
Match_columns 242
No_of_seqs 212 out of 2218
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 2.9E-46 6.2E-51 348.7 27.2 237 1-241 620-869 (1195)
2 COG0514 RecQ Superfamily II DN 100.0 6.4E-45 1.4E-49 322.8 23.5 232 1-241 170-402 (590)
3 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-42 2.8E-47 310.1 27.7 218 1-222 166-383 (470)
4 PRK11057 ATP-dependent DNA hel 100.0 1.4E-42 3.1E-47 317.6 27.8 230 1-241 178-407 (607)
5 TIGR01389 recQ ATP-dependent D 100.0 1.6E-41 3.4E-46 310.9 27.3 231 1-241 166-396 (591)
6 KOG0351 ATP-dependent DNA heli 100.0 3.7E-41 8E-46 313.6 20.0 238 1-241 424-663 (941)
7 KOG0333 U5 snRNP-like RNA heli 100.0 1.3E-36 2.8E-41 260.6 18.9 170 1-172 456-627 (673)
8 KOG0352 ATP-dependent DNA heli 100.0 8.9E-37 1.9E-41 256.3 14.9 234 1-241 180-434 (641)
9 KOG0353 ATP-dependent DNA heli 100.0 3.2E-36 7E-41 250.2 13.5 228 1-240 254-527 (695)
10 KOG0331 ATP-dependent RNA heli 100.0 1.1E-35 2.4E-40 259.7 16.9 176 1-177 275-456 (519)
11 KOG0328 Predicted ATP-dependen 100.0 1.3E-34 2.7E-39 232.1 16.2 176 1-178 204-382 (400)
12 COG0513 SrmB Superfamily II DN 100.0 3.8E-34 8.2E-39 257.1 20.2 177 1-179 209-391 (513)
13 KOG0330 ATP-dependent RNA heli 100.0 4.4E-34 9.6E-39 237.5 14.1 176 1-178 239-416 (476)
14 PRK11776 ATP-dependent RNA hel 100.0 1.5E-32 3.3E-37 245.0 21.2 177 1-179 182-359 (460)
15 PRK04837 ATP-dependent RNA hel 100.0 2E-32 4.4E-37 241.9 18.6 175 1-177 194-370 (423)
16 PTZ00110 helicase; Provisional 100.0 1.2E-31 2.7E-36 242.7 22.2 177 1-178 312-493 (545)
17 PLN00206 DEAD-box ATP-dependen 100.0 1.8E-31 3.9E-36 240.7 20.8 177 1-177 304-483 (518)
18 KOG0336 ATP-dependent RNA heli 100.0 1.1E-31 2.4E-36 224.7 17.1 177 1-178 402-581 (629)
19 PRK10590 ATP-dependent RNA hel 100.0 3.1E-31 6.8E-36 236.1 20.9 176 1-178 184-361 (456)
20 PRK11634 ATP-dependent RNA hel 100.0 3.1E-31 6.7E-36 242.7 21.1 177 1-179 184-362 (629)
21 PRK04537 ATP-dependent RNA hel 100.0 3.9E-31 8.5E-36 240.4 20.8 176 1-178 196-373 (572)
22 KOG0340 ATP-dependent RNA heli 100.0 2.4E-31 5.3E-36 218.9 14.8 179 1-180 188-372 (442)
23 PRK11192 ATP-dependent RNA hel 100.0 3.7E-30 8.1E-35 228.2 20.8 176 1-178 182-361 (434)
24 KOG0338 ATP-dependent RNA heli 100.0 1E-30 2.2E-35 223.9 16.4 179 1-181 362-545 (691)
25 KOG0332 ATP-dependent RNA heli 100.0 2E-30 4.3E-35 214.8 17.4 172 1-174 268-448 (477)
26 PRK01297 ATP-dependent RNA hel 100.0 5.6E-30 1.2E-34 229.3 21.3 174 1-176 274-449 (475)
27 KOG0341 DEAD-box protein abstr 100.0 6.7E-31 1.5E-35 218.8 13.3 169 1-172 361-531 (610)
28 KOG0342 ATP-dependent RNA heli 100.0 1.8E-30 4E-35 221.5 16.0 175 1-178 265-446 (543)
29 KOG0326 ATP-dependent RNA heli 100.0 6.9E-31 1.5E-35 213.8 12.4 177 1-179 262-439 (459)
30 KOG0335 ATP-dependent RNA heli 100.0 5.1E-30 1.1E-34 221.1 17.4 171 1-172 266-447 (482)
31 PTZ00424 helicase 45; Provisio 100.0 1.2E-29 2.6E-34 222.8 19.1 175 1-177 205-382 (401)
32 KOG0343 RNA Helicase [RNA proc 100.0 3.9E-29 8.4E-34 215.9 18.9 181 1-182 250-435 (758)
33 KOG0345 ATP-dependent RNA heli 100.0 1.8E-28 4E-33 208.3 17.0 177 2-180 193-374 (567)
34 KOG0346 RNA helicase [RNA proc 100.0 3.1E-28 6.7E-33 205.5 15.4 171 1-172 205-413 (569)
35 KOG0344 ATP-dependent RNA heli 100.0 3.4E-28 7.5E-33 211.6 16.0 176 2-178 326-504 (593)
36 TIGR03817 DECH_helic helicase/ 100.0 6.9E-28 1.5E-32 224.5 18.7 164 1-169 198-386 (742)
37 KOG0327 Translation initiation 99.9 6.5E-27 1.4E-31 194.8 15.0 174 1-178 204-379 (397)
38 KOG0339 ATP-dependent RNA heli 99.9 1.7E-26 3.6E-31 198.1 16.1 177 1-178 405-584 (731)
39 KOG0348 ATP-dependent RNA heli 99.9 3.3E-26 7.1E-31 197.3 13.7 177 1-177 335-562 (708)
40 PRK12898 secA preprotein trans 99.9 7.9E-25 1.7E-29 198.2 20.6 165 2-171 413-588 (656)
41 KOG4284 DEAD box protein [Tran 99.9 9.4E-26 2E-30 198.1 13.3 175 1-177 203-388 (980)
42 KOG0334 RNA helicase [RNA proc 99.9 1.9E-25 4E-30 205.4 15.7 172 1-173 550-724 (997)
43 KOG0350 DEAD-box ATP-dependent 99.9 1.5E-25 3.2E-30 191.9 13.2 181 1-182 364-553 (620)
44 TIGR00580 mfd transcription-re 99.9 2.9E-24 6.2E-29 202.9 20.2 164 1-169 603-770 (926)
45 PRK10689 transcription-repair 99.9 8.3E-24 1.8E-28 203.5 21.4 164 1-169 752-919 (1147)
46 PRK10917 ATP-dependent DNA hel 99.9 1.4E-23 3E-28 194.7 21.7 163 1-167 413-587 (681)
47 PRK13767 ATP-dependent helicas 99.9 4.9E-24 1.1E-28 202.3 19.0 108 60-167 283-396 (876)
48 PHA02653 RNA helicase NPH-II; 99.9 5.5E-24 1.2E-28 194.9 18.5 167 1-172 325-517 (675)
49 TIGR01587 cas3_core CRISPR-ass 99.9 8.1E-24 1.8E-28 183.3 16.1 166 1-169 159-336 (358)
50 PRK09200 preprotein translocas 99.9 3.9E-23 8.4E-28 190.8 20.6 163 2-171 368-543 (790)
51 PRK09751 putative ATP-dependen 99.9 1.6E-23 3.4E-28 203.4 18.9 164 1-166 163-382 (1490)
52 TIGR00643 recG ATP-dependent D 99.9 5.1E-23 1.1E-27 189.7 20.5 163 1-167 390-564 (630)
53 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.8E-23 6E-28 194.3 16.6 165 1-173 150-340 (819)
54 PRK02362 ski2-like helicase; P 99.9 2.8E-22 6.1E-27 188.0 21.2 120 60-179 242-409 (737)
55 KOG0347 RNA helicase [RNA proc 99.9 7.6E-24 1.6E-28 183.3 8.2 119 60-179 462-580 (731)
56 PRK11664 ATP-dependent RNA hel 99.9 5.7E-23 1.2E-27 192.5 13.8 164 1-172 153-342 (812)
57 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.4E-22 5.3E-27 185.9 17.5 162 1-168 209-390 (844)
58 TIGR03714 secA2 accessory Sec 99.9 9.8E-22 2.1E-26 180.2 20.4 162 2-171 364-539 (762)
59 cd00079 HELICc Helicase superf 99.9 7.3E-22 1.6E-26 146.4 15.1 129 36-165 2-131 (131)
60 TIGR00963 secA preprotein tran 99.9 2E-21 4.4E-26 177.3 20.2 163 2-171 345-519 (745)
61 KOG0337 ATP-dependent RNA heli 99.9 1.2E-22 2.6E-27 171.1 9.0 176 1-177 199-376 (529)
62 PRK04914 ATP-dependent helicas 99.9 1.4E-21 3.1E-26 184.3 16.0 121 46-167 479-601 (956)
63 COG1111 MPH1 ERCC4-like helica 99.9 1.7E-21 3.7E-26 167.9 15.0 125 44-170 346-482 (542)
64 PRK00254 ski2-like helicase; P 99.9 8.2E-21 1.8E-25 177.8 20.4 119 60-178 237-398 (720)
65 PRK12906 secA preprotein trans 99.9 7.9E-21 1.7E-25 174.8 19.5 162 2-170 380-554 (796)
66 COG1201 Lhr Lhr-like helicases 99.9 6.3E-21 1.4E-25 175.8 18.8 163 1-168 187-361 (814)
67 PRK12900 secA preprotein trans 99.9 8E-21 1.7E-25 176.2 17.7 164 2-172 538-714 (1025)
68 PRK01172 ski2-like helicase; P 99.9 1.3E-20 2.7E-25 175.6 18.6 119 60-179 235-389 (674)
69 PRK11131 ATP-dependent RNA hel 99.9 6.7E-21 1.5E-25 182.6 16.1 166 1-173 222-415 (1294)
70 TIGR03158 cas3_cyano CRISPR-as 99.9 2.3E-20 4.9E-25 161.4 16.2 145 1-154 185-357 (357)
71 TIGR00631 uvrb excinuclease AB 99.8 7.5E-20 1.6E-24 168.1 19.7 126 45-172 425-556 (655)
72 PF00271 Helicase_C: Helicase 99.8 1.5E-20 3.2E-25 127.4 8.8 77 80-157 2-78 (78)
73 TIGR01967 DEAH_box_HrpA ATP-de 99.8 7.1E-20 1.5E-24 176.1 15.5 167 1-173 215-408 (1283)
74 COG1200 RecG RecG-like helicas 99.8 4.6E-19 9.9E-24 158.5 19.0 183 1-187 415-613 (677)
75 COG1202 Superfamily II helicas 99.8 7.1E-20 1.5E-24 159.8 13.0 165 1-169 376-553 (830)
76 PRK14701 reverse gyrase; Provi 99.8 1.3E-19 2.9E-24 178.7 13.3 170 1-180 273-467 (1638)
77 PRK05298 excinuclease ABC subu 99.8 1.3E-18 2.8E-23 160.6 18.1 122 46-169 430-557 (652)
78 KOG0349 Putative DEAD-box RNA 99.8 2.4E-19 5.2E-24 152.0 10.5 110 60-169 504-615 (725)
79 PRK13766 Hef nuclease; Provisi 99.8 1.1E-18 2.4E-23 165.1 16.1 126 45-172 346-482 (773)
80 KOG0354 DEAD-box like helicase 99.8 1.3E-18 2.8E-23 157.6 15.0 128 43-172 392-532 (746)
81 KOG0329 ATP-dependent RNA heli 99.8 2.8E-20 6E-25 148.0 3.3 136 1-173 221-359 (387)
82 PRK09401 reverse gyrase; Revie 99.8 4.8E-18 1E-22 164.4 13.0 141 1-154 272-429 (1176)
83 PHA02558 uvsW UvsW helicase; P 99.8 1.7E-17 3.7E-22 149.5 15.5 106 60-166 343-449 (501)
84 PRK09694 helicase Cas3; Provis 99.7 5.7E-17 1.2E-21 152.5 17.4 96 60-158 559-664 (878)
85 TIGR00603 rad25 DNA repair hel 99.7 3.3E-17 7.2E-22 150.5 15.4 135 46-186 480-630 (732)
86 COG1197 Mfd Transcription-repa 99.7 8.3E-17 1.8E-21 151.3 18.3 165 1-170 746-914 (1139)
87 PRK12904 preprotein translocas 99.7 2.3E-16 5.1E-21 146.1 20.1 163 2-171 370-575 (830)
88 smart00490 HELICc helicase sup 99.7 1.3E-17 2.9E-22 113.3 9.0 81 76-157 2-82 (82)
89 PRK13104 secA preprotein trans 99.7 5.4E-16 1.2E-20 144.0 19.5 163 2-171 384-589 (896)
90 COG1204 Superfamily II helicas 99.7 1.3E-16 2.8E-21 148.6 15.2 166 1-168 184-407 (766)
91 PRK13107 preprotein translocas 99.7 5.1E-16 1.1E-20 143.9 18.2 163 2-171 389-593 (908)
92 KOG0951 RNA helicase BRR2, DEA 99.7 4.5E-16 9.8E-21 145.6 16.0 190 1-192 478-725 (1674)
93 KOG0952 DNA/RNA helicase MER3/ 99.7 1.8E-15 3.8E-20 139.9 18.7 189 1-195 279-517 (1230)
94 COG4098 comFA Superfamily II D 99.7 3.5E-15 7.5E-20 123.6 15.3 164 1-168 237-415 (441)
95 TIGR00595 priA primosomal prot 99.7 5.1E-15 1.1E-19 133.1 16.9 98 74-171 271-383 (505)
96 KOG0948 Nuclear exosomal RNA h 99.7 3.1E-15 6.6E-20 134.3 15.1 127 62-189 384-560 (1041)
97 KOG0950 DNA polymerase theta/e 99.7 1.8E-15 3.8E-20 139.0 13.6 122 61-182 460-624 (1008)
98 TIGR01054 rgy reverse gyrase. 99.6 3E-15 6.6E-20 145.2 14.8 129 2-141 271-409 (1171)
99 PRK05580 primosome assembly pr 99.6 3.2E-14 7E-19 132.2 17.1 106 73-178 438-558 (679)
100 COG0556 UvrB Helicase subunit 99.6 1.6E-13 3.4E-18 119.6 18.3 121 46-168 430-556 (663)
101 COG1205 Distinct helicase fami 99.6 2.6E-14 5.6E-19 134.9 14.2 170 1-171 236-424 (851)
102 COG1203 CRISPR-associated heli 99.6 2.8E-14 6.1E-19 133.7 14.3 166 1-170 374-551 (733)
103 COG1643 HrpA HrpA-like helicas 99.6 2.2E-14 4.7E-19 133.7 13.1 168 1-172 199-390 (845)
104 KOG0922 DEAH-box RNA helicase 99.5 1.5E-13 3.3E-18 122.5 12.5 169 1-173 199-394 (674)
105 COG1061 SSL2 DNA or RNA helica 99.5 9.7E-13 2.1E-17 116.8 15.2 94 60-155 282-375 (442)
106 KOG4150 Predicted ATP-dependen 99.5 7.1E-13 1.5E-17 116.4 13.9 112 60-171 524-642 (1034)
107 KOG0947 Cytoplasmic exosomal R 99.5 7.6E-13 1.6E-17 121.7 14.0 132 50-183 557-739 (1248)
108 PRK12903 secA preprotein trans 99.4 7.1E-12 1.5E-16 115.9 18.4 161 2-170 366-540 (925)
109 PLN03142 Probable chromatin-re 99.4 1.1E-12 2.5E-17 125.1 13.3 124 46-170 471-600 (1033)
110 PRK12326 preprotein translocas 99.4 1.3E-11 2.8E-16 112.6 17.2 162 2-171 367-549 (764)
111 PRK12901 secA preprotein trans 99.4 3.8E-11 8.2E-16 112.7 17.6 163 2-171 568-743 (1112)
112 PRK11448 hsdR type I restricti 99.4 1.3E-11 2.8E-16 119.6 14.1 95 61-157 698-801 (1123)
113 PRK13103 secA preprotein trans 99.3 5E-11 1.1E-15 111.2 16.7 162 2-171 389-593 (913)
114 KOG0924 mRNA splicing factor A 99.3 5.9E-12 1.3E-16 112.6 9.3 165 1-169 504-697 (1042)
115 KOG0923 mRNA splicing factor A 99.3 1.8E-11 3.9E-16 109.2 11.4 163 1-168 414-605 (902)
116 PRK12899 secA preprotein trans 99.3 2E-10 4.2E-15 107.6 18.7 162 2-171 508-683 (970)
117 KOG0953 Mitochondrial RNA heli 99.3 9.1E-11 2E-15 103.0 15.4 127 51-181 348-488 (700)
118 COG4581 Superfamily II RNA hel 99.3 8.1E-11 1.8E-15 111.3 15.1 107 61-168 379-536 (1041)
119 KOG0920 ATP-dependent RNA heli 99.2 6E-11 1.3E-15 111.0 10.8 125 48-173 400-548 (924)
120 CHL00122 secA preprotein trans 99.2 2.3E-09 4.9E-14 99.9 18.6 122 2-129 364-491 (870)
121 TIGR01407 dinG_rel DnaQ family 99.1 2.6E-09 5.6E-14 102.3 14.7 168 1-169 599-814 (850)
122 PRK12902 secA preprotein trans 99.1 1E-08 2.2E-13 95.7 17.6 121 2-129 379-506 (939)
123 KOG0949 Predicted helicase, DE 99.0 8.4E-10 1.8E-14 102.4 8.2 76 89-165 965-1044(1330)
124 COG1198 PriA Primosomal protei 99.0 1.6E-08 3.4E-13 93.7 15.7 107 74-180 493-614 (730)
125 KOG0926 DEAH-box RNA helicase 99.0 1.4E-09 3E-14 99.2 7.9 82 89-171 607-706 (1172)
126 KOG0390 DNA repair protein, SN 98.8 4.9E-08 1.1E-12 90.3 13.1 126 45-170 577-708 (776)
127 PRK11747 dinG ATP-dependent DN 98.8 1.7E-07 3.8E-12 87.8 16.8 165 1-169 460-674 (697)
128 PRK08074 bifunctional ATP-depe 98.8 1.4E-07 3E-12 91.1 15.8 169 1-169 676-893 (928)
129 COG1110 Reverse gyrase [DNA re 98.8 8.1E-08 1.8E-12 90.1 11.7 128 1-141 280-417 (1187)
130 KOG0925 mRNA splicing factor A 98.7 1.1E-07 2.4E-12 82.8 11.3 160 1-171 195-389 (699)
131 COG1199 DinG Rad3-related DNA 98.7 1E-06 2.2E-11 82.5 16.4 163 1-168 407-616 (654)
132 PRK07246 bifunctional ATP-depe 98.7 9.8E-07 2.1E-11 84.1 16.0 165 1-169 577-783 (820)
133 COG0653 SecA Preprotein transl 98.6 3.1E-07 6.6E-12 85.5 11.3 161 3-170 370-546 (822)
134 PF13307 Helicase_C_2: Helicas 98.6 5E-07 1.1E-11 69.9 10.5 107 60-168 8-149 (167)
135 KOG0387 Transcription-coupled 98.6 3.4E-07 7.3E-12 83.9 10.6 128 45-172 529-661 (923)
136 KOG0385 Chromatin remodeling c 98.6 3.9E-07 8.5E-12 83.2 10.6 121 49-172 477-602 (971)
137 KOG0384 Chromodomain-helicase 98.6 4E-07 8.7E-12 86.7 10.3 112 60-172 698-814 (1373)
138 TIGR00604 rad3 DNA repair heli 98.5 4.6E-06 1E-10 78.7 16.4 164 1-168 445-673 (705)
139 PF06862 DUF1253: Protein of u 98.5 3.4E-05 7.4E-10 68.0 19.7 177 1-178 219-424 (442)
140 TIGR00348 hsdR type I site-spe 98.4 1.3E-05 2.9E-10 75.0 15.0 94 61-155 514-633 (667)
141 COG0553 HepA Superfamily II DN 98.4 5.2E-06 1.1E-10 79.9 12.5 124 46-170 692-823 (866)
142 KOG0389 SNF2 family DNA-depend 98.3 7.1E-06 1.5E-10 75.4 11.8 129 44-173 759-892 (941)
143 KOG0392 SNF2 family DNA-depend 98.3 3.9E-06 8.4E-11 80.2 10.1 128 45-172 1309-1457(1549)
144 TIGR03117 cas_csf4 CRISPR-asso 98.2 0.00016 3.4E-09 66.9 17.6 164 1-169 375-616 (636)
145 KOG0388 SNF2 family DNA-depend 98.2 1E-05 2.2E-10 73.8 9.5 126 45-171 1027-1156(1185)
146 COG4096 HsdR Type I site-speci 98.2 1E-05 2.2E-10 75.0 9.0 94 61-156 426-525 (875)
147 KOG0391 SNF2 family DNA-depend 98.1 3.3E-05 7.1E-10 73.9 11.9 128 44-172 1258-1390(1958)
148 KOG1123 RNA polymerase II tran 98.1 1.8E-05 4E-10 69.6 9.5 106 45-156 526-634 (776)
149 KOG1000 Chromatin remodeling p 98.1 1.5E-05 3.2E-10 70.1 8.7 106 60-166 491-598 (689)
150 COG4889 Predicted helicase [Ge 97.8 1.1E-05 2.4E-10 75.1 3.1 105 62-166 461-585 (1518)
151 KOG1015 Transcription regulato 97.8 9.8E-05 2.1E-09 69.5 8.2 120 46-165 1126-1271(1567)
152 KOG0951 RNA helicase BRR2, DEA 97.8 0.001 2.2E-08 64.6 14.6 118 59-183 1357-1508(1674)
153 smart00492 HELICc3 helicase su 97.7 0.00067 1.4E-08 50.9 10.8 77 91-167 26-136 (141)
154 KOG4439 RNA polymerase II tran 97.7 0.00037 8.1E-09 63.8 10.4 119 45-164 728-851 (901)
155 smart00491 HELICc2 helicase su 97.7 0.00072 1.6E-08 50.8 10.1 70 99-168 31-138 (142)
156 TIGR02562 cas3_yersinia CRISPR 97.5 0.00051 1.1E-08 66.1 9.2 92 64-158 759-881 (1110)
157 KOG0386 Chromatin remodeling c 97.5 0.00047 1E-08 65.3 8.7 122 46-168 710-835 (1157)
158 TIGR00596 rad1 DNA repair prot 97.4 0.00069 1.5E-08 64.5 9.1 40 44-83 268-317 (814)
159 KOG1002 Nucleotide excision re 97.4 0.0014 2.9E-08 58.1 10.0 127 45-172 619-752 (791)
160 PRK05580 primosome assembly pr 97.2 0.0038 8.3E-08 58.8 11.0 94 45-139 173-267 (679)
161 TIGR00595 priA primosomal prot 97.2 0.0037 8.1E-08 56.8 10.5 78 60-138 24-101 (505)
162 PF13871 Helicase_C_4: Helicas 97.1 0.0031 6.7E-08 52.5 8.3 57 103-159 52-116 (278)
163 PRK14873 primosome assembly pr 97.0 0.0051 1.1E-07 57.6 9.6 92 46-138 172-265 (665)
164 PF02399 Herpes_ori_bp: Origin 97.0 0.018 4E-07 54.2 12.8 102 60-169 281-388 (824)
165 PRK10917 ATP-dependent DNA hel 96.9 0.0062 1.3E-07 57.5 9.9 78 60-137 309-390 (681)
166 COG1198 PriA Primosomal protei 96.7 0.0048 1E-07 58.0 7.0 78 44-121 227-305 (730)
167 TIGR00643 recG ATP-dependent D 96.6 0.015 3.1E-07 54.5 9.4 77 60-136 283-363 (630)
168 KOG0701 dsRNA-specific nucleas 96.6 0.0018 3.9E-08 64.9 3.4 96 62-157 293-399 (1606)
169 PRK14873 primosome assembly pr 96.3 0.036 7.7E-07 52.1 10.3 93 73-179 439-548 (665)
170 TIGR00580 mfd transcription-re 96.2 0.029 6.2E-07 54.6 9.3 77 60-136 499-579 (926)
171 COG1110 Reverse gyrase [DNA re 96.2 0.041 8.9E-07 53.0 9.8 78 45-123 110-192 (1187)
172 KOG0921 Dosage compensation co 96.0 0.0092 2E-07 56.5 4.5 122 50-172 632-777 (1282)
173 KOG2340 Uncharacterized conser 95.9 0.05 1.1E-06 48.9 8.7 117 61-178 552-677 (698)
174 KOG1016 Predicted DNA helicase 95.6 0.056 1.2E-06 50.7 7.8 110 61-170 719-848 (1387)
175 PRK10689 transcription-repair 95.6 0.083 1.8E-06 52.7 9.5 77 60-136 648-728 (1147)
176 COG0513 SrmB Superfamily II DN 95.0 0.16 3.4E-06 46.5 8.8 69 64-136 102-180 (513)
177 KOG1133 Helicase of the DEAD s 94.7 1.6 3.4E-05 40.9 14.3 104 62-168 630-779 (821)
178 COG1200 RecG RecG-like helicas 94.6 0.31 6.7E-06 45.3 9.6 77 60-136 310-390 (677)
179 COG1197 Mfd Transcription-repa 94.1 0.41 8.9E-06 47.1 9.6 80 56-135 638-721 (1139)
180 PRK14701 reverse gyrase; Provi 93.8 0.25 5.3E-06 51.1 8.1 62 60-121 121-187 (1638)
181 KOG0331 ATP-dependent RNA heli 93.4 0.73 1.6E-05 41.8 9.5 91 61-155 165-272 (519)
182 PF10593 Z1: Z1 domain; Inter 92.7 0.74 1.6E-05 37.7 7.9 88 86-178 110-202 (239)
183 cd00268 DEADc DEAD-box helicas 92.6 1.3 2.7E-05 34.8 9.1 75 60-138 68-151 (203)
184 PRK11634 ATP-dependent RNA hel 92.6 0.74 1.6E-05 43.2 8.8 73 60-136 73-155 (629)
185 TIGR01054 rgy reverse gyrase. 92.5 0.49 1.1E-05 47.6 7.8 79 60-138 120-207 (1171)
186 KOG1513 Nuclear helicase MOP-3 92.4 0.2 4.3E-06 47.4 4.6 54 105-158 850-911 (1300)
187 TIGR00614 recQ_fam ATP-depende 92.2 0.99 2.2E-05 40.8 8.9 61 60-121 50-110 (470)
188 PRK11776 ATP-dependent RNA hel 91.7 1 2.2E-05 40.5 8.3 74 61-138 72-155 (460)
189 PRK11192 ATP-dependent RNA hel 91.3 1.4 3E-05 39.3 8.8 74 61-138 73-155 (434)
190 TIGR01389 recQ ATP-dependent D 91.0 1.6 3.5E-05 40.6 9.2 60 60-120 52-111 (591)
191 KOG0339 ATP-dependent RNA heli 90.5 4.5 9.7E-05 36.8 10.8 71 61-135 296-375 (731)
192 KOG0338 ATP-dependent RNA heli 90.5 1.5 3.2E-05 39.7 7.8 81 62-146 253-343 (691)
193 KOG1132 Helicase of the DEAD s 90.2 11 0.00025 36.4 13.7 137 1-141 484-656 (945)
194 PF00270 DEAD: DEAD/DEAH box h 89.7 4.3 9.3E-05 30.5 9.2 73 60-136 43-125 (169)
195 KOG0347 RNA helicase [RNA proc 89.5 1 2.2E-05 41.1 6.1 55 63-121 265-322 (731)
196 PRK04537 ATP-dependent RNA hel 89.2 1.6 3.6E-05 40.5 7.6 72 61-136 84-165 (572)
197 KOG1001 Helicase-like transcri 88.7 0.086 1.9E-06 49.5 -1.2 120 44-164 520-643 (674)
198 PRK04837 ATP-dependent RNA hel 87.7 3.4 7.4E-05 36.7 8.4 74 61-138 83-165 (423)
199 PRK10590 ATP-dependent RNA hel 87.5 3.6 7.7E-05 37.1 8.4 72 63-138 77-157 (456)
200 PRK09401 reverse gyrase; Revie 86.8 2.8 6.1E-05 42.3 7.9 77 60-136 122-207 (1176)
201 PRK13766 Hef nuclease; Provisi 86.7 3.2 6.9E-05 40.0 8.1 76 60-140 57-141 (773)
202 PRK11057 ATP-dependent DNA hel 86.3 5.1 0.00011 37.5 9.1 59 61-120 65-123 (607)
203 cd01524 RHOD_Pyr_redox Member 85.4 3.1 6.8E-05 28.0 5.5 37 60-97 50-86 (90)
204 PRK01297 ATP-dependent RNA hel 84.7 5.9 0.00013 35.8 8.4 73 61-136 162-243 (475)
205 KOG0389 SNF2 family DNA-depend 84.5 6.5 0.00014 37.6 8.5 71 52-125 439-512 (941)
206 PLN03137 ATP-dependent DNA hel 84.0 7.3 0.00016 39.1 9.0 60 61-121 500-561 (1195)
207 PTZ00110 helicase; Provisional 84.0 4.7 0.0001 37.2 7.6 73 61-137 203-284 (545)
208 KOG0298 DEAD box-containing he 81.6 3.8 8.2E-05 41.0 6.1 101 55-160 1215-1315(1394)
209 KOG0330 ATP-dependent RNA heli 81.3 10 0.00022 33.3 8.0 82 50-136 119-210 (476)
210 cd01523 RHOD_Lact_B Member of 80.0 4.9 0.00011 27.6 4.9 37 60-97 60-96 (100)
211 TIGR00963 secA preprotein tran 79.7 12 0.00026 35.8 8.6 56 60-121 96-154 (745)
212 COG1111 MPH1 ERCC4-like helica 74.9 27 0.00058 31.8 8.9 75 60-139 57-140 (542)
213 cd01444 GlpE_ST GlpE sulfurtra 74.7 9.7 0.00021 25.6 5.1 37 60-97 55-92 (96)
214 TIGR00631 uvrb excinuclease AB 74.3 49 0.0011 31.5 11.1 105 44-150 39-173 (655)
215 PRK12898 secA preprotein trans 74.3 21 0.00046 33.8 8.6 69 53-128 136-207 (656)
216 smart00115 CASc Caspase, inter 73.9 47 0.001 27.1 10.2 84 60-150 7-106 (241)
217 cd00046 DEXDc DEAD-like helica 73.6 28 0.00061 24.3 8.3 62 60-125 29-93 (144)
218 PF03808 Glyco_tran_WecB: Glyc 73.2 40 0.00087 25.9 9.3 72 44-117 33-106 (172)
219 cd01529 4RHOD_Repeats Member o 73.2 8.3 0.00018 26.2 4.5 37 60-97 55-92 (96)
220 KOG0329 ATP-dependent RNA heli 73.2 21 0.00046 29.6 7.3 92 63-158 112-218 (387)
221 smart00450 RHOD Rhodanese Homo 73.2 5.9 0.00013 26.5 3.7 38 60-98 55-93 (100)
222 PRK13104 secA preprotein trans 73.0 24 0.00052 34.6 8.7 56 60-121 122-180 (896)
223 COG0514 RecQ Superfamily II DN 72.2 13 0.00028 34.7 6.5 59 61-120 57-115 (590)
224 TIGR00696 wecB_tagA_cpsF bacte 71.7 45 0.00098 25.9 8.8 70 46-117 35-105 (177)
225 COG0052 RpsB Ribosomal protein 71.7 33 0.00071 28.2 8.0 44 43-86 45-88 (252)
226 PRK15483 type III restriction- 71.3 4.5 9.8E-05 39.8 3.6 45 112-156 501-545 (986)
227 COG3587 Restriction endonuclea 70.3 5 0.00011 38.7 3.5 46 111-156 482-527 (985)
228 PRK03692 putative UDP-N-acetyl 70.0 60 0.0013 26.6 9.6 57 61-117 105-162 (243)
229 smart00493 TOPRIM topoisomeras 69.8 26 0.00057 22.4 6.2 59 64-125 2-60 (76)
230 cd00158 RHOD Rhodanese Homolog 69.5 11 0.00024 24.6 4.3 38 60-97 49-86 (89)
231 cd01520 RHOD_YbbB Member of th 68.5 15 0.00033 26.5 5.2 38 60-98 85-123 (128)
232 TIGR03817 DECH_helic helicase/ 68.5 25 0.00054 33.9 7.9 74 60-138 80-165 (742)
233 cd00032 CASc Caspase, interleu 68.4 64 0.0014 26.3 11.5 85 60-151 8-108 (243)
234 PLN00206 DEAD-box ATP-dependen 68.3 27 0.00058 32.1 7.8 74 60-137 195-277 (518)
235 KOG0348 ATP-dependent RNA heli 68.1 43 0.00094 30.9 8.7 129 7-136 143-293 (708)
236 PRK09751 putative ATP-dependen 67.9 31 0.00067 36.0 8.7 74 61-138 37-132 (1490)
237 PRK05298 excinuclease ABC subu 67.9 82 0.0018 29.9 11.1 105 45-151 43-177 (652)
238 PRK12899 secA preprotein trans 67.8 33 0.00072 33.9 8.5 56 60-121 134-192 (970)
239 KOG0342 ATP-dependent RNA heli 67.8 17 0.00036 32.9 6.0 56 61-120 154-213 (543)
240 cd01526 RHOD_ThiF Member of th 66.5 6 0.00013 28.4 2.7 37 60-97 71-109 (122)
241 PF04364 DNA_pol3_chi: DNA pol 66.4 33 0.00073 25.3 6.7 80 48-139 15-95 (137)
242 cd01528 RHOD_2 Member of the R 66.1 20 0.00043 24.5 5.2 38 60-98 57-95 (101)
243 KOG0345 ATP-dependent RNA heli 65.8 37 0.0008 30.8 7.7 71 63-136 81-163 (567)
244 cd01518 RHOD_YceA Member of th 65.7 8.7 0.00019 26.4 3.3 37 60-97 60-97 (101)
245 COG0610 Type I site-specific r 65.6 67 0.0014 32.1 10.3 67 109-178 590-660 (962)
246 cd01534 4RHOD_Repeat_3 Member 65.6 10 0.00022 25.7 3.6 36 61-97 56-91 (95)
247 cd01533 4RHOD_Repeat_2 Member 64.9 19 0.00041 25.1 5.0 38 60-98 65-104 (109)
248 cd01449 TST_Repeat_2 Thiosulfa 64.6 19 0.00042 25.3 5.0 36 60-96 77-113 (118)
249 cd01527 RHOD_YgaP Member of th 64.2 12 0.00025 25.5 3.7 37 60-97 53-90 (99)
250 cd01535 4RHOD_Repeat_4 Member 63.8 25 0.00054 26.2 5.7 37 60-97 48-85 (145)
251 smart00487 DEXDc DEAD-like hel 63.5 60 0.0013 24.3 8.4 72 61-136 54-135 (201)
252 cd01521 RHOD_PspE2 Member of t 63.3 11 0.00025 26.3 3.6 37 60-97 63-101 (110)
253 PF01751 Toprim: Toprim domain 62.5 13 0.00029 25.6 3.7 63 64-127 1-75 (100)
254 PRK09200 preprotein translocas 62.3 42 0.00091 32.6 8.0 57 58-120 116-176 (790)
255 KOG0340 ATP-dependent RNA heli 62.1 22 0.00048 31.0 5.5 57 60-120 74-133 (442)
256 PRK00254 ski2-like helicase; P 62.0 23 0.0005 34.0 6.4 71 60-137 67-145 (720)
257 cd01532 4RHOD_Repeat_1 Member 62.0 16 0.00035 24.6 4.0 37 60-97 49-88 (92)
258 PRK02362 ski2-like helicase; P 61.6 23 0.0005 34.1 6.3 72 60-138 66-145 (737)
259 COG1922 WecG Teichoic acid bio 61.5 90 0.002 25.8 8.8 57 61-117 108-166 (253)
260 KOG0383 Predicted helicase [Ge 60.6 6 0.00013 37.4 2.1 77 47-125 616-696 (696)
261 cd06533 Glyco_transf_WecG_TagA 60.4 75 0.0016 24.4 9.6 71 45-117 32-104 (171)
262 KOG0350 DEAD-box ATP-dependent 60.0 1.4E+02 0.0031 27.4 11.3 88 51-138 204-303 (620)
263 TIGR00096 probable S-adenosylm 59.9 25 0.00054 29.5 5.5 79 46-132 14-92 (276)
264 cd01447 Polysulfide_ST Polysul 58.8 9.7 0.00021 26.0 2.5 37 60-97 60-97 (103)
265 COG1205 Distinct helicase fami 57.9 64 0.0014 31.8 8.6 57 60-120 114-175 (851)
266 PTZ00424 helicase 45; Provisio 57.1 1E+02 0.0022 26.9 9.3 75 60-138 95-178 (401)
267 KOG0334 RNA helicase [RNA proc 56.0 48 0.001 32.8 7.2 56 61-120 438-496 (997)
268 cd01519 RHOD_HSP67B2 Member of 55.9 16 0.00035 25.0 3.3 37 60-97 65-102 (106)
269 PRK01415 hypothetical protein; 55.4 37 0.0008 28.0 5.7 38 60-98 170-208 (247)
270 PRK05728 DNA polymerase III su 54.5 45 0.00097 24.8 5.6 83 43-139 10-94 (142)
271 COG0353 RecR Recombinational D 54.2 59 0.0013 25.7 6.3 63 61-125 78-149 (198)
272 PRK13767 ATP-dependent helicas 53.4 36 0.00078 33.6 6.2 74 61-138 84-180 (876)
273 KOG0385 Chromatin remodeling c 53.2 1E+02 0.0022 30.0 8.6 58 60-120 216-275 (971)
274 cd01445 TST_Repeats Thiosulfat 52.5 46 0.001 24.5 5.4 37 60-97 94-134 (138)
275 KOG0343 RNA Helicase [RNA proc 52.3 58 0.0013 30.3 6.7 55 61-120 141-198 (758)
276 KOG0335 ATP-dependent RNA heli 51.7 45 0.00097 30.3 6.0 55 62-120 153-210 (482)
277 KOG1131 RNA polymerase II tran 51.2 1.8E+02 0.0038 27.1 9.5 106 64-171 533-682 (755)
278 cd01448 TST_Repeat_1 Thiosulfa 51.1 41 0.0009 23.7 4.9 37 60-97 78-116 (122)
279 PRK01172 ski2-like helicase; P 50.3 64 0.0014 30.7 7.2 70 60-136 64-141 (674)
280 cd01525 RHOD_Kc Member of the 49.6 28 0.00061 23.8 3.7 36 61-97 65-101 (105)
281 PRK12904 preprotein translocas 49.2 1E+02 0.0022 30.3 8.2 56 60-121 121-179 (830)
282 COG1204 Superfamily II helicas 48.9 59 0.0013 31.5 6.7 69 61-136 76-152 (766)
283 PRK00162 glpE thiosulfate sulf 48.8 47 0.001 22.9 4.8 37 60-97 57-94 (108)
284 KOG0337 ATP-dependent RNA heli 48.1 86 0.0019 28.2 6.9 72 61-138 90-172 (529)
285 PRK10287 thiosulfate:cyanide s 46.8 41 0.0009 23.5 4.1 36 61-97 60-95 (104)
286 PRK05320 rhodanese superfamily 45.8 31 0.00067 28.6 3.9 38 60-98 174-212 (257)
287 cd01530 Cdc25 Cdc25 phosphatas 44.5 36 0.00078 24.4 3.7 38 60-97 67-117 (121)
288 COG0300 DltE Short-chain dehyd 44.4 1.8E+02 0.0039 24.3 8.1 72 50-123 21-95 (265)
289 PF00581 Rhodanese: Rhodanese- 44.2 52 0.0011 22.4 4.4 37 60-97 66-108 (113)
290 PLN02160 thiosulfate sulfurtra 42.9 36 0.00078 25.0 3.5 37 60-97 80-117 (136)
291 PF10657 RC-P840_PscD: Photosy 42.2 43 0.00094 24.2 3.6 39 101-139 63-107 (144)
292 PF04273 DUF442: Putative phos 41.5 1.3E+02 0.0027 21.4 8.3 45 35-81 57-106 (110)
293 TIGR02981 phageshock_pspE phag 40.5 51 0.0011 22.9 3.8 36 60-96 57-92 (101)
294 PRK09189 uroporphyrinogen-III 40.0 1.1E+02 0.0024 24.6 6.3 71 48-120 104-178 (240)
295 KOG0352 ATP-dependent DNA heli 40.0 60 0.0013 29.2 4.8 107 9-120 5-121 (641)
296 cd01522 RHOD_1 Member of the R 39.8 45 0.00098 23.6 3.6 38 60-98 63-101 (117)
297 PRK11784 tRNA 2-selenouridine 39.6 2.5E+02 0.0055 24.3 8.7 48 60-109 87-135 (345)
298 cd05212 NAD_bind_m-THF_DH_Cycl 39.0 1.6E+02 0.0035 21.9 7.8 75 59-141 26-103 (140)
299 PF07429 Glyco_transf_56: 4-al 38.8 1.3E+02 0.0027 26.3 6.5 114 65-180 140-265 (360)
300 COG2519 GCD14 tRNA(1-methylade 38.5 1E+02 0.0022 25.6 5.7 36 46-84 176-211 (256)
301 KOG0346 RNA helicase [RNA proc 38.4 64 0.0014 29.1 4.7 62 61-126 93-164 (569)
302 TIGR03865 PQQ_CXXCW PQQ-depend 38.1 96 0.0021 23.6 5.3 37 60-97 115-153 (162)
303 TIGR02621 cas3_GSU0051 CRISPR- 37.5 79 0.0017 31.0 5.7 55 61-119 61-142 (844)
304 PRK11493 sseA 3-mercaptopyruva 37.4 75 0.0016 26.5 5.0 38 60-98 230-268 (281)
305 PLN02723 3-mercaptopyruvate su 36.6 88 0.0019 26.7 5.4 37 60-97 268-305 (320)
306 KOG0326 ATP-dependent RNA heli 36.6 51 0.0011 28.4 3.7 72 61-136 153-233 (459)
307 COG1168 MalY Bifunctional PLP- 35.9 3.1E+02 0.0067 24.2 10.2 108 48-158 147-267 (388)
308 PF02602 HEM4: Uroporphyrinoge 34.6 94 0.002 24.6 5.1 73 46-121 102-177 (231)
309 TIGR03167 tRNA_sel_U_synt tRNA 34.3 2.6E+02 0.0057 23.9 7.8 47 61-109 74-121 (311)
310 KOG0384 Chromodomain-helicase 33.1 1.5E+02 0.0033 30.4 6.7 70 50-120 409-483 (1373)
311 cd01446 DSP_MapKP N-terminal r 32.4 1E+02 0.0023 22.1 4.6 38 60-97 74-122 (132)
312 PRK00142 putative rhodanese-re 32.4 56 0.0012 27.9 3.5 38 60-98 170-208 (314)
313 PRK13103 secA preprotein trans 32.1 3.1E+02 0.0067 27.3 8.6 58 59-122 121-181 (913)
314 COG0607 PspE Rhodanese-related 31.4 49 0.0011 22.6 2.6 36 60-96 60-96 (110)
315 KOG0351 ATP-dependent DNA heli 31.2 1.3E+02 0.0029 30.0 6.1 56 64-120 307-364 (941)
316 cd03031 GRX_GRX_like Glutaredo 31.0 2.3E+02 0.005 21.3 7.3 45 63-108 1-52 (147)
317 PHA03371 circ protein; Provisi 30.7 43 0.00093 27.1 2.3 46 121-166 29-88 (240)
318 PF08331 DUF1730: Domain of un 30.6 81 0.0017 20.7 3.3 26 45-70 53-78 (78)
319 TIGR03714 secA2 accessory Sec 30.2 2.6E+02 0.0057 27.2 7.8 57 59-121 109-173 (762)
320 PRK06646 DNA polymerase III su 30.2 2.2E+02 0.0047 21.6 6.0 83 43-139 10-93 (154)
321 COG4064 MtrG Tetrahydromethano 29.3 30 0.00064 22.3 1.0 15 142-156 34-49 (75)
322 PF02142 MGS: MGS-like domain 28.8 55 0.0012 22.2 2.4 43 78-121 23-69 (95)
323 PRK05597 molybdopterin biosynt 27.9 80 0.0017 27.5 3.7 37 60-97 313-350 (355)
324 PF14617 CMS1: U3-containing 9 27.0 1.5E+02 0.0033 24.5 5.0 71 62-135 127-206 (252)
325 PF12689 Acid_PPase: Acid Phos 26.9 3E+02 0.0064 21.2 9.3 102 3-110 67-168 (169)
326 smart00851 MGS MGS-like domain 26.4 1E+02 0.0022 20.6 3.4 42 78-121 23-64 (90)
327 PF12683 DUF3798: Protein of u 25.9 3.2E+02 0.007 22.9 6.6 78 60-144 61-144 (275)
328 PHA02653 RNA helicase NPH-II; 25.6 2.2E+02 0.0048 27.3 6.5 72 61-138 222-299 (675)
329 COG2927 HolC DNA polymerase II 25.6 2.9E+02 0.0064 20.7 7.7 80 50-141 17-97 (144)
330 TIGR00282 metallophosphoestera 25.5 2E+02 0.0043 24.0 5.5 46 73-120 132-177 (266)
331 PF13380 CoA_binding_2: CoA bi 24.9 2.1E+02 0.0046 20.2 5.0 49 63-116 58-106 (116)
332 TIGR01587 cas3_core CRISPR-ass 24.9 3.7E+02 0.0079 22.9 7.4 38 60-97 28-65 (358)
333 PF12761 End3: Actin cytoskele 24.3 1.6E+02 0.0034 23.4 4.3 31 143-173 67-98 (195)
334 KOG0341 DEAD-box protein abstr 24.2 1.6E+02 0.0034 26.3 4.7 57 60-120 245-310 (610)
335 TIGR02562 cas3_yersinia CRISPR 24.2 52 0.0011 33.0 2.0 19 1-19 628-646 (1110)
336 PRK07594 type III secretion sy 24.1 5.4E+02 0.012 23.2 9.2 29 143-171 285-313 (433)
337 PRK13529 malate dehydrogenase; 23.9 1.6E+02 0.0034 27.5 5.0 53 64-120 101-154 (563)
338 PF08121 Toxin_33: Waglerin fa 23.8 61 0.0013 15.3 1.2 13 219-231 1-13 (22)
339 PF07652 Flavi_DEAD: Flaviviru 23.1 1.3E+02 0.0029 22.7 3.6 33 51-83 22-55 (148)
340 PF11496 HDA2-3: Class II hist 22.8 4.7E+02 0.01 22.2 13.5 134 44-178 94-254 (297)
341 COG0329 DapA Dihydrodipicolina 22.8 4.7E+02 0.01 22.1 7.8 25 44-70 23-47 (299)
342 COG0074 SucD Succinyl-CoA synt 22.7 4.8E+02 0.01 22.1 8.6 69 45-115 51-119 (293)
343 PF14824 Sirohm_synth_M: Siroh 22.7 67 0.0015 17.1 1.4 13 110-122 2-14 (30)
344 PRK07960 fliI flagellum-specif 22.4 6E+02 0.013 23.1 8.8 29 143-171 305-335 (455)
345 COG0634 Hpt Hypoxanthine-guani 22.1 87 0.0019 24.4 2.5 83 45-128 18-109 (178)
346 PRK13107 preprotein translocas 21.8 5.5E+02 0.012 25.6 8.3 56 59-120 121-179 (908)
347 PRK01026 tetrahydromethanopter 21.8 41 0.00089 22.2 0.6 15 142-156 34-49 (77)
348 COG1054 Predicted sulfurtransf 21.7 3.8E+02 0.0083 22.8 6.4 81 13-97 118-208 (308)
349 cd01133 F1-ATPase_beta F1 ATP 21.4 4.9E+02 0.011 21.8 10.5 29 143-171 203-231 (274)
350 PRK05928 hemD uroporphyrinogen 20.8 3.6E+02 0.0078 21.3 6.2 23 65-88 128-150 (249)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.9e-46 Score=348.69 Aligned_cols=237 Identities=47% Similarity=0.854 Sum_probs=206.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
++||||+++.+++++...|+...+.++..++.|+|+.|.+..........+..++.......++||||.+++.++.++..
T Consensus 620 lALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~ 699 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAER 699 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHH
Confidence 58999999999999999999999999999999999999988755545667777776554567899999999999999999
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|... |+.+..|||+|++.+|..+++.|.+|+++|||||++++||||+|+|++||||++|.++++|+||+|||||+|.+|
T Consensus 700 L~~~-Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g 778 (1195)
T PLN03137 700 LQEF-GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 778 (1195)
T ss_pred HHHC-CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCc
Confidence 9874 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHHHHHcCCCCCh-------------HHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccc
Q 026168 161 VCIVLYQKKDFSRVVCMLRNGQGFKS-------------EAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKAC 227 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~ 227 (242)
.|++||+..+...+..++..+..... ...+...+.+..|.+||++...|||++++.||||.++...|
T Consensus 779 ~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C 858 (1195)
T PLN03137 779 SCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNC 858 (1195)
T ss_pred eEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCC
Confidence 99999999999999988875432110 01233456789999999986689999999999998654455
Q ss_pred cCCCCCCCCCCCCC
Q 026168 228 KNGSNPCDNCLKTS 241 (242)
Q Consensus 228 ~~~~~~Cd~C~~~~ 241 (242)
.. .||||...+
T Consensus 859 ~~---~CDnC~~~~ 869 (1195)
T PLN03137 859 KK---TCDNCSSSK 869 (1195)
T ss_pred CC---CCCCCCCCC
Confidence 33 599998754
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.4e-45 Score=322.79 Aligned_cols=232 Identities=43% Similarity=0.720 Sum_probs=202.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHh-cccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIK-DRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~-~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
++||||+++.+++++...|+...+.++..+++||||.|.+....+... .+..+.. .....+++||||.|++.++.+++
T Consensus 170 ~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~-q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 170 LALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSD-QLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHH-HHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 589999999999999999999999999999999999999987542222 2222221 13356779999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
+|+.. |+.+..|||+|+.++|+.+.+.|.+++++|+|||.+||||||.|||++||||++|.++++|+|.+|||||+|.+
T Consensus 249 ~L~~~-g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 249 WLRKN-GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHHHC-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 99997 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCC
Q 026168 160 SVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLK 239 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~ 239 (242)
+.|++||++.|......+++.... ..+..+.....+..|..|+++ ..|+|..+++||||. .... |..||+|..
T Consensus 328 a~aill~~~~D~~~~~~~i~~~~~-~~~~~~~~~~kl~~~~~~~e~-~~crr~~ll~yfge~-~~~~----c~~c~~c~~ 400 (590)
T COG0514 328 AEAILLYSPEDIRWQRYLIEQSKP-DEEQKQIELAKLRQMIAYCET-QTCRRLVLLKYFGED-EPEP----CGNCDNCLD 400 (590)
T ss_pred ceEEEeeccccHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccc-ccchHHHHHHhcCcc-cccc----ccCCCcccC
Confidence 999999999999999888887665 333444455678999999998 459999999999996 4334 456999987
Q ss_pred CC
Q 026168 240 TS 241 (242)
Q Consensus 240 ~~ 241 (242)
++
T Consensus 401 ~~ 402 (590)
T COG0514 401 TP 402 (590)
T ss_pred cc
Confidence 65
No 3
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-42 Score=310.06 Aligned_cols=218 Identities=46% Similarity=0.723 Sum_probs=190.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
++||||+++.+..++.+.++...+.++..++.++|+.+.+.......+..+..++.....++++||||+|++.++.+++.
T Consensus 166 l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~ 245 (470)
T TIGR00614 166 MALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTAS 245 (470)
T ss_pred EEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHH
Confidence 58999999999999999999988888889999999999887755566777777776444667789999999999999999
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|+.. ++.+..|||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++++|+||+||+||+|.+|
T Consensus 246 L~~~-g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~ 324 (470)
T TIGR00614 246 LQNL-GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPS 324 (470)
T ss_pred HHhc-CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCc
Confidence 9874 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCC
Q 026168 161 VCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESF 222 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~ 222 (242)
.|++|+++.+...++.++......... ....+..+.|..+++. ..|||+.+++||||..
T Consensus 325 ~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~crr~~l~~~f~~~~ 383 (470)
T TIGR00614 325 ECHLFYAPADINRLRRLLMEEPDGQQR--TYKLKLYEMMEYCLNS-STCRRLILLSHFGEKQ 383 (470)
T ss_pred eEEEEechhHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHhcc-ccCHHHHHHHHcCCcc
Confidence 999999999999999888765432211 2223345666666665 8999999999999963
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-42 Score=317.64 Aligned_cols=230 Identities=39% Similarity=0.686 Sum_probs=199.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
++||||+++.++.++...++...+.+...+++++|+.+.+... ..+...+..++... .+.++||||+|++.++.+++.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~-~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~ 255 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEK-FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAAR 255 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeec-cchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHH
Confidence 5899999999999999999998888888899999998887653 23455666666543 567899999999999999999
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|+.. ++.+..|||+|++++|.++++.|++|+++|||||+++++|||+|+|++||+||+|.++++|+||+||+||+|.+|
T Consensus 256 L~~~-g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~ 334 (607)
T PRK11057 256 LQSR-GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334 (607)
T ss_pred HHhC-CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCc
Confidence 9985 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCCC
Q 026168 161 VCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~~ 240 (242)
.|++|+++.+...+..++...... .........+..|..|+++ ..|||+.+++||||... .. |..||+|...
T Consensus 335 ~~ill~~~~d~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~Crr~~~l~yf~e~~~-~~----c~~cd~c~~~ 406 (607)
T PRK11057 335 EAMLFYDPADMAWLRRCLEEKPAG--QQQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ-EP----CGNCDICLDP 406 (607)
T ss_pred eEEEEeCHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHhCCCCC-CC----CCCCCCCCCc
Confidence 999999999999888888765432 2223334568899999998 78999999999999753 23 5679999875
Q ss_pred C
Q 026168 241 S 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 407 ~ 407 (607)
T PRK11057 407 P 407 (607)
T ss_pred c
Confidence 3
No 5
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.6e-41 Score=310.89 Aligned_cols=231 Identities=40% Similarity=0.664 Sum_probs=201.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
|++|||+++.+..++...++.+.+..+..++.++|+.+.+... .++...+..++... .+.++||||+|++.++.+++.
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~-~~~~~~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~ 243 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKK-NNKQKFLLDYLKKH-RGQSGIIYASSRKKVEELAER 243 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeC-CCHHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHH
Confidence 5899999999999999999998888888899999999988763 44566777777654 467899999999999999999
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|... ++++..|||+|++++|..+++.|.+|+++|||||+++++|||+|+|++||+|+.|.++++|+|++||+||+|.+|
T Consensus 244 L~~~-g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~ 322 (591)
T TIGR01389 244 LESQ-GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPA 322 (591)
T ss_pred HHhC-CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCc
Confidence 9874 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCCC
Q 026168 161 VCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~~ 240 (242)
.|+++|++.+...++.+++..... .+........+..|..|+++ ..|+|..++.||||.. .. +|+.||||...
T Consensus 323 ~~il~~~~~d~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~c~r~~~~~~f~~~~-~~----~c~~cd~c~~~ 395 (591)
T TIGR01389 323 EAILLYSPADIALLKRRIEQSEAD-DDYKQIEREKLRAMIAYCET-QTCRRAYILRYFGENE-VE----PCGNCDNCLDP 395 (591)
T ss_pred eEEEecCHHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHcc-cccHhHHHHHhcCCCC-CC----CCCCCCCCCCC
Confidence 999999999999988888764432 22223335568889999997 7999999999999863 22 35679999876
Q ss_pred C
Q 026168 241 S 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 396 ~ 396 (591)
T TIGR01389 396 P 396 (591)
T ss_pred C
Confidence 4
No 6
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-41 Score=313.63 Aligned_cols=238 Identities=49% Similarity=0.853 Sum_probs=214.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecC-hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~-~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
|++|||+++.+++++...|++..+.++..+++|+|++|+|.++. ......+...++...+.+.+||||.++++|+.++.
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~ 503 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSA 503 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHH
Confidence 68999999999999999999999999999999999999999865 55555666666666688899999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.|+. .+.++.+||+||++.+|..+...|..++++|+|||-+||||||.|+|+.||||.+|++++.|.|.+|||||+|.+
T Consensus 504 ~L~~-~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~ 582 (941)
T KOG0351|consen 504 VLRS-LGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLP 582 (941)
T ss_pred HHHH-hchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCc
Confidence 9998 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCC
Q 026168 160 SVCIVLYQKKDFSRVVCMLRNGQGFKSEAFK-TAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCL 238 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~ 238 (242)
+.|++||...+..+++.++..+ .......+ .....+..+..||++...|||+++++||||.+....|..+ -.||+|.
T Consensus 583 s~C~l~y~~~D~~~l~~ll~s~-~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~c~~~-k~cd~C~ 660 (941)
T KOG0351|consen 583 SSCVLLYGYADISELRRLLTSG-NRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKHCKKH-KTCDNCR 660 (941)
T ss_pred ceeEEecchhHHHHHHHHHHcc-ccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhhccCC-chHHHhh
Confidence 9999999999999999999988 22222222 3566688999999988999999999999999888888754 5899998
Q ss_pred CCC
Q 026168 239 KTS 241 (242)
Q Consensus 239 ~~~ 241 (242)
..+
T Consensus 661 ~~~ 663 (941)
T KOG0351|consen 661 ESL 663 (941)
T ss_pred ccc
Confidence 763
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=260.56 Aligned_cols=170 Identities=26% Similarity=0.345 Sum_probs=156.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+||.+...+..+|..|..+.+.. .-..+-+++.++. ...+++..|.+++... ..+++|||+|+++.|+.|+
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALA 534 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHH
Confidence 58999999999999999999887777763 4556677777766 6777899999999875 6788999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|.+. ++.+..|||+-++++|+.+++.|++|...||||||+++||||+|+|.+|||||.++++++|+||+||+||+|+
T Consensus 535 k~LeK~-g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk 613 (673)
T KOG0333|consen 535 KILEKA-GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGK 613 (673)
T ss_pred HHHhhc-cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccccc
Confidence 999985 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHH
Q 026168 159 PSVCIVLYQKKDFS 172 (242)
Q Consensus 159 ~g~~i~l~~~~~~~ 172 (242)
.|.++.|+++.+-.
T Consensus 614 ~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 614 SGTAISFLTPADTA 627 (673)
T ss_pred CceeEEEeccchhH
Confidence 99999999998855
No 8
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=8.9e-37 Score=256.32 Aligned_cols=234 Identities=35% Similarity=0.657 Sum_probs=197.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCce-EEecCCCCCCeEEEEEe--cChhHHHHHHHHHhccc------------CCCcEE
Q 026168 1 MALTATATQSVRLDILKALRIPHAL-VLETSFDRPNLKYEVIG--KSKEALKQIGQLIKDRF------------KDQCGI 65 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~-~i~~~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~------------~~~~~i 65 (242)
++||||+++.+++++...|.+..|+ ++.++..|.|+.|.+.. .-.+.+..|.++-.... ..+-+|
T Consensus 180 vALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGI 259 (641)
T KOG0352|consen 180 VALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGI 259 (641)
T ss_pred EEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceE
Confidence 5899999999999999999998886 45578889999988654 22345555555443211 124579
Q ss_pred EEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHH
Q 026168 66 IYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIES 145 (242)
Q Consensus 66 IF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~ 145 (242)
|||.|++.|+.++-.|..+ |+++..||+|+...||.++.+.|.++++.||+||..+|||+|.|+|++||||++|.++..
T Consensus 260 VYCRTR~~cEq~AI~l~~~-Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~Ag 338 (641)
T KOG0352|consen 260 VYCRTRNECEQVAIMLEIA-GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAG 338 (641)
T ss_pred EEeccHHHHHHHHHHhhhc-CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHH
Confidence 9999999999999999876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCceEEEEeecCcHHHHHHHHHcC------CCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhC
Q 026168 146 YYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNG------QGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFG 219 (242)
Q Consensus 146 y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~ 219 (242)
|.|..||+||+|.+++|-++|+..|...+..++... ...+....+......+.|.+||+. ..||+..+..|||
T Consensus 339 YYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFCE~-~~CRH~~ia~fFg 417 (641)
T KOG0352|consen 339 YYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFCES-ARCRHVSIASFFD 417 (641)
T ss_pred HHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH-cccchHHHHHhcC
Confidence 999999999999999999999999998877776542 223344556677788999999998 7899999999999
Q ss_pred CCCCcccccCCCCCCCCCCCCC
Q 026168 220 ESFDRKACKNGSNPCDNCLKTS 241 (242)
Q Consensus 220 ~~~~~~~~~~~~~~Cd~C~~~~ 241 (242)
+... +| .+|||.|++++
T Consensus 418 D~~p--~c---kg~cd~c~~p~ 434 (641)
T KOG0352|consen 418 DTEC--PC---KTNCDYCRDPT 434 (641)
T ss_pred CCCC--CC---CCCccccCCHH
Confidence 8643 44 35999998753
No 9
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=250.25 Aligned_cols=228 Identities=44% Similarity=0.793 Sum_probs=207.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe---cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG---KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~---~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|.+|||++..+.++.+..|.......++.+++|||++|.|+. ++++..+.+.++++....++.+||||-+.++++.+
T Consensus 254 igltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekv 333 (695)
T KOG0353|consen 254 IGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKV 333 (695)
T ss_pred eeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHH
Confidence 578999999999999999999999999999999999999987 45677888999998888899999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHH---------
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQ--------- 148 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Q--------- 148 (242)
+..|+.. |+.+..||+.|.+.+|..+-+.|..|+++|+|||-++++|||.|+|++|||..+|.+++.|.|
T Consensus 334 a~alkn~-gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrm 412 (695)
T KOG0353|consen 334 AKALKNH-GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRM 412 (695)
T ss_pred HHHHHhc-CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHH
Confidence 9999985 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------HhhccCCCCCCceEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHH
Q 026168 149 ----------------------------------ESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMA 194 (242)
Q Consensus 149 ----------------------------------r~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (242)
..||+||++.++.|+++|.-.++.+...++... .....
T Consensus 413 tkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e--------~~g~q 484 (695)
T KOG0353|consen 413 TKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQME--------NTGIQ 484 (695)
T ss_pred hhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHH--------hhhHH
Confidence 789999999999999999999988776665432 12345
Q ss_pred HHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCCC
Q 026168 195 QAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240 (242)
Q Consensus 195 ~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~~ 240 (242)
.+..|.+|+.+...|||..+.++|+|.+.+..|.. .||+|.+.
T Consensus 485 ~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k---~cd~c~~~ 527 (695)
T KOG0353|consen 485 KLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNK---MCDNCCKD 527 (695)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHH---HhhhhccC
Confidence 58899999999899999999999999998888866 79999764
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=259.72 Aligned_cols=176 Identities=24% Similarity=0.356 Sum_probs=153.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC---CCCCCeEEEEEe-cChhHHHHHHHHHhccc--CCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS---FDRPNLKYEVIG-KSKEALKQIGQLIKDRF--KDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~---~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~--~~~~~iIF~~~~~~~ 74 (242)
|++|||+|..++.....+|..+..+.+... ....++.+.+.. ....|...|..+|.... ..+++||||+|++.|
T Consensus 275 lm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 275 LMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 689999999999999999995544444422 345677777655 45667777777777553 567999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccC
Q 026168 75 VEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAG 154 (242)
Q Consensus 75 ~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~g 154 (242)
++|+..|+.. ++++..+||+.++.+|+.+++.|++|+..||||||+++||+|+|+|++|||||+|.++++|+||+||+|
T Consensus 355 ~~l~~~l~~~-~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 355 DELARNLRRK-GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTG 433 (519)
T ss_pred HHHHHHHHhc-CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccc
Confidence 9999999984 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeecCcHHHHHHH
Q 026168 155 RDNLPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 155 R~g~~g~~i~l~~~~~~~~~~~~ 177 (242)
|+|+.|.+++|++..+......+
T Consensus 434 Ra~~~G~A~tfft~~~~~~a~~l 456 (519)
T KOG0331|consen 434 RAGKKGTAITFFTSDNAKLAREL 456 (519)
T ss_pred cCCCCceEEEEEeHHHHHHHHHH
Confidence 99999999999998887754433
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-34 Score=232.07 Aligned_cols=176 Identities=17% Similarity=0.270 Sum_probs=157.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+|.++.+...+++..|..+.+.. ......|++.++. .+++|++.|..+.... .-.+++|||||++.+..|
T Consensus 204 v~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 204 VLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWL 282 (400)
T ss_pred EEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh-ehheEEEEecccchhhHH
Confidence 47999999999999999999888887774 4555657766554 6677999998887643 566799999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
.+.+++. ++.+...||.|++++|++++.+|++|+.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|
T Consensus 283 tekm~~~-nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 283 TEKMREA-NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred HHHHHhh-CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 9999985 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~~ 178 (242)
++|.++.|+...++..++.+.
T Consensus 362 RkGvainFVk~~d~~~lrdie 382 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIE 382 (400)
T ss_pred CcceEEEEecHHHHHHHHHHH
Confidence 999999999999888765544
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-34 Score=257.06 Aligned_cols=177 Identities=23% Similarity=0.349 Sum_probs=155.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CC--CCCCeEEEEEe-cCh-hHHHHHHHHHhcccCCCcEEEEeCchHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SF--DRPNLKYEVIG-KSK-EALKQIGQLIKDRFKDQCGIIYCLSKNECV 75 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~--~r~~i~~~v~~-~~~-~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~ 75 (242)
++||||+|..+.+...+++..|..+.+.. .. ..+++.+.++. ... +|+..|..++... ...++||||+|++.++
T Consensus 209 llfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~-~~~~~IVF~~tk~~~~ 287 (513)
T COG0513 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE-DEGRVIVFVRTKRLVE 287 (513)
T ss_pred EEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCcHHHHH
Confidence 58999999999999999999777666652 22 56788887766 334 4999999999865 5557999999999999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 76 EVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 76 ~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
.++..|... |+++..+||+|++.+|.++++.|++|+.+||||||+++||||+|+|++|||||+|.+.++|+||+||+||
T Consensus 288 ~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgR 366 (513)
T COG0513 288 ELAESLRKR-GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGR 366 (513)
T ss_pred HHHHHHHHC-CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCcccc
Confidence 999999985 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecC-cHHHHHHHHH
Q 026168 156 DNLPSVCIVLYQKK-DFSRVVCMLR 179 (242)
Q Consensus 156 ~g~~g~~i~l~~~~-~~~~~~~~~~ 179 (242)
+|..|.++.|+.+. +...+..+.+
T Consensus 367 aG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 367 AGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred CCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 99999999999985 6665554443
No 13
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=237.48 Aligned_cols=176 Identities=19% Similarity=0.262 Sum_probs=152.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEE-ecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVI-GKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~-~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+|..+.+.....+..|..+.+.. ...-+++.+.+. ...++|...|+.++++. .+.++||||++...+..++
T Consensus 239 ~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la 317 (476)
T KOG0330|consen 239 FLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLA 317 (476)
T ss_pred EEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHH
Confidence 48999999999988877776665555543 233455554433 35677888888888865 6788999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
-.|+. +|+.+..+||.|++..|...++.|++|...||||||+++||+|+|+|++|||||+|.+..+|+||+||+||+|+
T Consensus 318 ~~L~~-lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 318 LLLRN-LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred HHHHh-cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC
Confidence 99988 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
+|.+|.|++..|.+.+.++-
T Consensus 397 sG~~ItlVtqyDve~~qrIE 416 (476)
T KOG0330|consen 397 SGKAITLVTQYDVELVQRIE 416 (476)
T ss_pred CcceEEEEehhhhHHHHHHH
Confidence 99999999998888665543
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-32 Score=245.02 Aligned_cols=177 Identities=21% Similarity=0.350 Sum_probs=155.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
|+||||+|+.+......++..+..+.+......+++.+.++. ...++...|..++... ...++||||++++.++.+++
T Consensus 182 ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 182 LLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHH-QPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHH
Confidence 589999999999888888887766666655556667766555 4566888888888654 56789999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.|... +..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.
T Consensus 261 ~L~~~-~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 261 ALNAQ-GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred HHHhC-CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc
Confidence 99885 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHH
Q 026168 160 SVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~ 179 (242)
|.+++|+.+.+...+..+.+
T Consensus 340 G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 340 GLALSLVAPEEMQRANAIED 359 (460)
T ss_pred ceEEEEEchhHHHHHHHHHH
Confidence 99999999988776655543
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-32 Score=241.87 Aligned_cols=175 Identities=22% Similarity=0.326 Sum_probs=150.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||++..+...+...+..+..+.+.. .....++.+.+.. ...++...|..++... ...++||||++++.++.++
T Consensus 194 ~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~ 272 (423)
T PRK04837 194 MLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIW 272 (423)
T ss_pred EEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHH
Confidence 47999999999988888887766555543 2334556554443 4567778888887654 5678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
..|... ++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+||+|.+.++|+||+||+||.|+
T Consensus 273 ~~L~~~-g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 273 GHLAAD-GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA 351 (423)
T ss_pred HHHHhC-CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCC
Confidence 999875 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~ 177 (242)
.|.+++|+.+.+...+..+
T Consensus 352 ~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 352 SGHSISLACEEYALNLPAI 370 (423)
T ss_pred CeeEEEEeCHHHHHHHHHH
Confidence 9999999998877665554
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-31 Score=242.70 Aligned_cols=177 Identities=19% Similarity=0.235 Sum_probs=147.9
Q ss_pred CEEeecCChHHHHHHHHHcCCC-CceEEec-C-CCCCCeEEEEEe-cChhHHHHHHHHHhccc-CCCcEEEEeCchHHHH
Q 026168 1 MALTATATQSVRLDILKALRIP-HALVLET-S-FDRPNLKYEVIG-KSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECV 75 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~-~~~~i~~-~-~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~ 75 (242)
++||||+|..+......++... ..+.+.. . ....++.+.+.. ...++...|..++.... ...++||||++++.++
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~ 391 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGAD 391 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHH
Confidence 5899999999988887777542 2222221 1 223566665543 45667777877776543 5679999999999999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 76 EVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 76 ~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.++++|+||+||+||
T Consensus 392 ~l~~~L~~~-g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 392 FLTKELRLD-GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHc-CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 999999874 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCcHHHHHHHH
Q 026168 156 DNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 156 ~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
.|+.|.+++|+++.+...+..++
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHH
Confidence 99999999999998876554443
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.8e-31 Score=240.72 Aligned_cols=177 Identities=19% Similarity=0.235 Sum_probs=144.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC-CCCCCeEEEEEe-cChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS-FDRPNLKYEVIG-KSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~-~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l 77 (242)
++||||+|..+......++..+..+.+... ....++.+.+.. ...++...|.+++.... ..+++||||+++..++.+
T Consensus 304 l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 304 LLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 589999999988777777654433333322 222345544433 45566777777776432 246899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
+..|....++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC
Confidence 99997655889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~ 177 (242)
..|.+++|+++.+...+..+
T Consensus 464 ~~G~ai~f~~~~~~~~~~~l 483 (518)
T PLN00206 464 EKGTAIVFVNEEDRNLFPEL 483 (518)
T ss_pred CCeEEEEEEchhHHHHHHHH
Confidence 99999999998876544433
No 18
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.1e-31 Score=224.73 Aligned_cols=177 Identities=21% Similarity=0.308 Sum_probs=154.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-C-CCCCCeEEE-EEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-S-FDRPNLKYE-VIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~-~~r~~i~~~-v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
++.|||.|+.++++..+++..|..+++.. . ..-..+++. ++..+.++++.+-.+++...+..++||||..+..|+.|
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHL 481 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhc
Confidence 47899999999999999998876655542 1 122334444 34477889988888888877889999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
..-|.-. |+.+..+||+-++.+|+..++.|++|+++||||||+++||+|+|+|.+|+|||+|.++++|+||+||+||+|
T Consensus 482 SSd~~l~-gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 482 SSDFCLK-GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred cchhhhc-ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 9888765 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~~ 178 (242)
+.|.++.|+...++.....++
T Consensus 561 r~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 561 RTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred CCcceEEEEehhhHHHHHHHH
Confidence 999999999999988665554
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.98 E-value=3.1e-31 Score=236.12 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=149.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||++..+.....+++..+..+.+.. ....+++.+.+.. ....+...+..++... ...++||||++++.++.++
T Consensus 184 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~t~~~~~~l~ 262 (456)
T PRK10590 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKG-NWQQVLVFTRTKHGANHLA 262 (456)
T ss_pred EEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcC-CCCcEEEEcCcHHHHHHHH
Confidence 58999999999888888888776665543 3445666665544 3344555555555543 5678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++||+|++|.++++|+||+||+||.|.
T Consensus 263 ~~L~~~-g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 263 EQLNKD-GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAA 341 (456)
T ss_pred HHHHHC-CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCC
Confidence 999874 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
.|.+++|+...+...+..+.
T Consensus 342 ~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 342 TGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred CeeEEEEecHHHHHHHHHHH
Confidence 99999999988876555443
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.98 E-value=3.1e-31 Score=242.69 Aligned_cols=177 Identities=16% Similarity=0.281 Sum_probs=154.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+|..+.....+++..+..+.+.. ....+++.+.++. ....+...|..++... ...++||||+|++.++.++
T Consensus 184 llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHH
Confidence 58999999999988888888776665553 3456777766554 4557788888888654 5678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|... ++.+..+||.|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+
T Consensus 263 ~~L~~~-g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 263 EALERN-GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred HHHHhC-CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 999885 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~~ 179 (242)
.|.+++|+.+.+...+..+.+
T Consensus 342 ~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 342 AGRALLFVENRERRLLRNIER 362 (629)
T ss_pred cceEEEEechHHHHHHHHHHH
Confidence 999999999988776666544
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=3.9e-31 Score=240.40 Aligned_cols=176 Identities=16% Similarity=0.216 Sum_probs=152.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||++..+......++..+..+.+.. .....++.+.+.. ...++...|..++... ...++||||+|++.++.++
T Consensus 196 ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~ 274 (572)
T PRK04537 196 LLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRS-EGARTMVFVNTKAFVERVA 274 (572)
T ss_pred EEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHH
Confidence 57999999999999988888776665543 3344556655544 5567777788887643 5678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|.
T Consensus 275 ~~L~~~-g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 275 RTLERH-GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred HHHHHc-CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 999885 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
.|.+++|+.+.+...+..+.
T Consensus 354 ~G~ai~~~~~~~~~~l~~i~ 373 (572)
T PRK04537 354 EGDAISFACERYAMSLPDIE 373 (572)
T ss_pred CceEEEEecHHHHHHHHHHH
Confidence 99999999987776655543
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=218.92 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=143.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe---cCCCCCCeEEEEEe-cChhHHHHHHHHHhccc--CCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE---TSFDRPNLKYEVIG-KSKEALKQIGQLIKDRF--KDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~---~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~--~~~~~iIF~~~~~~~ 74 (242)
++||||++..+..+..-....+....+. .......+.+.++. +...+-..|+.++.... ..+.++||+++..+|
T Consensus 188 LlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 188 LLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 5899999877655433322222222222 22333444444333 34555566777776433 367899999999999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccC
Q 026168 75 VEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAG 154 (242)
Q Consensus 75 ~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~g 154 (242)
+.|+..|+. +++.+..+||.|++.+|...+.+|+++..+||||||+++||+|+|.|.+|||||+|.++.+|+||+||++
T Consensus 268 Q~l~~~l~~-le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtA 346 (442)
T KOG0340|consen 268 QLLSMTLKN-LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTA 346 (442)
T ss_pred HHHHHHHhh-hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchh
Confidence 999999987 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 155 RDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 155 R~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
|+|+.|.++.+++..|.+.+..+.+.
T Consensus 347 RAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 347 RAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred cccCCcceEEEechhhHHHHHHHHHH
Confidence 99999999999999999877665543
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=3.7e-30 Score=228.21 Aligned_cols=176 Identities=20% Similarity=0.277 Sum_probs=143.4
Q ss_pred CEEeecCChH-HHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHH
Q 026168 1 MALTATATQS-VRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 1 i~~SAT~~~~-~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~ 76 (242)
++||||++.. +.+....++..+..+.+.. ...+.++.+.+.. ....+...|..++... ...++||||++++.++.
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~ 260 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQP-EVTRSIVFVRTRERVHE 260 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCChHHHHH
Confidence 5899999876 4444444444333332222 2345566665544 2356677777777643 56789999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD 156 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~ 156 (242)
++..|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||+
T Consensus 261 l~~~L~~~-~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 261 LAGWLRKA-GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred HHHHHHhC-CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 99999884 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcHHHHHHHH
Q 026168 157 NLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 157 g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
|..|.++++++..+...+..+.
T Consensus 340 g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 340 GRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred CCCceEEEEecHHHHHHHHHHH
Confidence 9999999999988876655443
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=223.90 Aligned_cols=179 Identities=21% Similarity=0.311 Sum_probs=157.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCC-CCCCeEEEEEe----cChhHHHHHHHHHhcccCCCcEEEEeCchHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSF-DRPNLKYEVIG----KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECV 75 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~-~r~~i~~~v~~----~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~ 75 (242)
|+|||||+.++.+++.-.|..|..+.+..+. ..+.+.+.++. .+.++-..|..++... ...++|||+.|++.|.
T Consensus 362 mLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rt-f~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 362 MLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRT-FQDRTIVFVRTKKQAH 440 (691)
T ss_pred eeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHh-cccceEEEEehHHHHH
Confidence 7999999999999999999999888888654 45667665442 3344445555666543 5778999999999999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 76 EVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 76 ~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
++.-+|.- +|.+++-+||+|++.+|...++.|++++++||||||+++||+|+++|..||||..|.+.+.|+||+||++|
T Consensus 441 Rl~IllGL-lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 441 RLRILLGL-LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred HHHHHHHH-hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 99988876 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCcHHHHHHHHHcC
Q 026168 156 DNLPSVCIVLYQKKDFSRVVCMLRNG 181 (242)
Q Consensus 156 ~g~~g~~i~l~~~~~~~~~~~~~~~~ 181 (242)
+|+.|.++.|+..++...++.++...
T Consensus 520 AGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 520 AGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred cccCcceEEEeccccHHHHHHHHhhh
Confidence 99999999999999999999888773
No 25
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=214.78 Aligned_cols=172 Identities=20% Similarity=0.298 Sum_probs=154.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||....+...+.+.+..+.++.+.. .....+|++..+. ...+|++.|..+.. ...-++.||||.|++.+..+
T Consensus 268 lLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg-~~tigqsiIFc~tk~ta~~l 346 (477)
T KOG0332|consen 268 LLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYG-LLTIGQSIIFCHTKATAMWL 346 (477)
T ss_pred EeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHh-hhhhhheEEEEeehhhHHHH
Confidence 68999999999999999999999998884 5667777655433 77889998888554 33567899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC------CHHHHHHHhh
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK------SIESYYQESG 151 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~------~~~~y~Qr~G 151 (242)
+..|.+. |..+..+||.|...+|..+++.|+.|..+|||+|++.+||||++.|++|||||+|- +.++|+||+|
T Consensus 347 ~~~m~~~-Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiG 425 (477)
T KOG0332|consen 347 YEEMRAE-GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIG 425 (477)
T ss_pred HHHHHhc-CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhc
Confidence 9999986 99999999999999999999999999999999999999999999999999999995 7899999999
Q ss_pred ccCCCCCCceEEEEeecCcHHHH
Q 026168 152 RAGRDNLPSVCIVLYQKKDFSRV 174 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~~~~~ 174 (242)
|+||.|+.|.++.++..++-..+
T Consensus 426 RtGRFGkkG~a~n~v~~~~s~~~ 448 (477)
T KOG0332|consen 426 RTGRFGKKGLAINLVDDKDSMNI 448 (477)
T ss_pred ccccccccceEEEeecccCcHHH
Confidence 99999999999999988765543
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=5.6e-30 Score=229.34 Aligned_cols=174 Identities=18% Similarity=0.256 Sum_probs=146.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+++|||++..+.+.+..++..+..+.+.. ....+++.+.+.. ...++...|..++... ...++||||++++.++.++
T Consensus 274 i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~ 352 (475)
T PRK01297 274 LLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIE 352 (475)
T ss_pred EEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHH
Confidence 57999999999888888887765444443 2334455555444 4556777777777643 5678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|... ++.+..+||++++++|.++++.|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|+
T Consensus 353 ~~L~~~-~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 353 ERLVKD-GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGA 431 (475)
T ss_pred HHHHHc-CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCC
Confidence 999874 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVC 176 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~ 176 (242)
.|.+++|+...|...+..
T Consensus 432 ~g~~i~~~~~~d~~~~~~ 449 (475)
T PRK01297 432 SGVSISFAGEDDAFQLPE 449 (475)
T ss_pred CceEEEEecHHHHHHHHH
Confidence 999999998876554433
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=6.7e-31 Score=218.78 Aligned_cols=169 Identities=20% Similarity=0.301 Sum_probs=148.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+|..++...++.|-.|..+.+. .....-|+-+.+.. ..+.|+-.|++.++. ..+++||||..+.+++.++
T Consensus 361 LLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 361 LLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIH 438 (610)
T ss_pred eeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHH
Confidence 6899999999999999998877665554 35555555555433 567788888888864 4678999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
++|--+ |..+..+||+-++++|...++.|+.|+-+||||||+++.|+|+|++.+|||||.|..++.|+||+||+||.|+
T Consensus 439 EYLLlK-GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~ 517 (610)
T KOG0341|consen 439 EYLLLK-GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGK 517 (610)
T ss_pred HHHHHc-cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCC
Confidence 998765 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHH
Q 026168 159 PSVCIVLYQKKDFS 172 (242)
Q Consensus 159 ~g~~i~l~~~~~~~ 172 (242)
.|.+..|++.....
T Consensus 518 ~GiATTfINK~~~e 531 (610)
T KOG0341|consen 518 TGIATTFINKNQEE 531 (610)
T ss_pred cceeeeeecccchH
Confidence 99999999876544
No 28
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=221.45 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=150.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec--C---CCCCCeE--EEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET--S---FDRPNLK--YEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNE 73 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~--~---~~r~~i~--~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~ 73 (242)
++||||.|+++++...-.|.. +++.+.. . .+...+. |.+.+ ...++..++.+++++....++||||+|...
T Consensus 265 ~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~l~Qgyvv~~-~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~ 342 (543)
T KOG0342|consen 265 LLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHERLEQGYVVAP-SDSRFSLLYTFLKKNIKRYKIIVFFSTCMS 342 (543)
T ss_pred eEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcchhhcccceEEecc-ccchHHHHHHHHHHhcCCceEEEEechhhH
Confidence 589999999999988888877 6666652 1 1222333 44443 444588889999887666899999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhcc
Q 026168 74 CVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRA 153 (242)
Q Consensus 74 ~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~ 153 (242)
+..++++|+. ..++|..+||++++..|..+..+|.+.+.-||||||+++||+|+|+|++||+||+|.++.+|+||+||+
T Consensus 343 vk~~~~lL~~-~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 343 VKFHAELLNY-IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred HHHHHHHHhh-cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 9999999996 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCcHHHHHHHH
Q 026168 154 GRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 154 gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
||.|..|.+++++.+.++..+..+-
T Consensus 422 aR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999887655443
No 29
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.9e-31 Score=213.83 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=154.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEE-EEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYE-VIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~-v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
+++|||.|-.+.....++|..|-.+-+-.......+.+. .+..+..|..-|-.++.. .+-.+.|||||+.+.+|.+|.
T Consensus 262 llySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfsk-LqINQsIIFCNS~~rVELLAk 340 (459)
T KOG0326|consen 262 LLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAK 340 (459)
T ss_pred eEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHH-hcccceEEEeccchHhHHHHH
Confidence 589999999999999999999887777666666665533 333566776666555543 356679999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.+.+ +|+.+.++|+.|.+++|..++.+|++|.++.|||||.+-||||++.|++|||||+|++.++|+||+||.||.|..
T Consensus 341 KITe-lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 341 KITE-LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred HHHh-ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 9987 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHH
Q 026168 160 SVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~ 179 (242)
|.|+.+++-.+...+..+.+
T Consensus 420 GlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 420 GLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred ceEEEEEehhhhhhHHHHHH
Confidence 99999999988877665543
No 30
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=221.08 Aligned_cols=171 Identities=18% Similarity=0.271 Sum_probs=148.7
Q ss_pred CEEeecCChHHHHHHHHHcCCC-CceEE-ecCCCCCCeEEEEEe-cChhHHHHHHHHHhccc---CCC-----cEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIP-HALVL-ETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRF---KDQ-----CGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~-~~~~i-~~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~---~~~-----~~iIF~~ 69 (242)
+|||||.|..+..++..++... ..+.+ +......|+.+.+.. .+.+|...|++++.... ... +++|||.
T Consensus 266 ~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 266 LLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred EEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 5899999999999777776652 22222 246778888888766 67788888988886432 223 7999999
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHH
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 149 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr 149 (242)
|++.+..++.+|... +++...+||..++.+|.+.+..|++|.+.+||||++++||+|+|+|++||+||+|.+..+|+||
T Consensus 346 t~~~~d~l~~~l~~~-~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHR 424 (482)
T KOG0335|consen 346 TKRGADELAAFLSSN-GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHR 424 (482)
T ss_pred ccchhhHHHHHHhcC-CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHh
Confidence 999999999999985 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCceEEEEeecCcHH
Q 026168 150 SGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 150 ~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+||+||.|+.|.++.|++..+..
T Consensus 425 IGRTGR~Gn~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 425 IGRTGRVGNGGRATSFFNEKNQN 447 (482)
T ss_pred ccccccCCCCceeEEEeccccch
Confidence 99999999999999999955443
No 31
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=1.2e-29 Score=222.82 Aligned_cols=175 Identities=18% Similarity=0.320 Sum_probs=147.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+|..+.+....++..+..+.+.. .....++.+.+.. ....+...+..++... ...++||||++++.++.+
T Consensus 205 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 205 ALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL-TITQAIIYCNTRRKVDYL 283 (401)
T ss_pred EEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc-CCCeEEEEecCcHHHHHH
Confidence 58999999998888888887765555443 3344555554443 2344566666666543 566899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|... +..+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|
T Consensus 284 ~~~l~~~-~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 362 (401)
T PTZ00424 284 TKKMHER-DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFG 362 (401)
T ss_pred HHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCC
Confidence 9999874 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~ 177 (242)
+.|.|++|+++.+...+..+
T Consensus 363 ~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 363 RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CCceEEEEEcHHHHHHHHHH
Confidence 99999999998887765544
No 32
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=215.95 Aligned_cols=181 Identities=17% Similarity=0.245 Sum_probs=160.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec---CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET---SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~---~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~ 76 (242)
|+||||-+..+.+.++-.|..|..+.+.. ...+.++.+.++. ...+|+..|..+|+.+ ...+.|||++|.+++..
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKF 328 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhc-cccceEEEEehhhHHHH
Confidence 68999999999988888888888877762 3456666655443 5789999999999987 67789999999999999
Q ss_pred HHHHHhh-hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 77 VSNFLNQ-KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 77 l~~~L~~-~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
+++.+.+ +.|.++..+||.|++..|..++..|...+.-||+|||+++||+|+|.|++||++|+|.++++|+||+||++|
T Consensus 329 ~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 329 LYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 9998876 358899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCcHHHHHHHHHcCC
Q 026168 156 DNLPSVCIVLYQKKDFSRVVCMLRNGQ 182 (242)
Q Consensus 156 ~g~~g~~i~l~~~~~~~~~~~~~~~~~ 182 (242)
.+..|.+++++.+++.+.+...++...
T Consensus 409 ~~~~G~sll~L~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 409 YKERGESLLMLTPSEEEAMLKKLQKKK 435 (758)
T ss_pred ccCCCceEEEEcchhHHHHHHHHHHcC
Confidence 999999999999999777766666543
No 33
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=208.28 Aligned_cols=177 Identities=20% Similarity=0.271 Sum_probs=150.8
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCC---CCCCeEEE-EEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSF---DRPNLKYE-VIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~---~r~~i~~~-v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+||||...++.+.....|.+|..+.+.... .+..+... ++....+|+..|+.++... ...++|||.+|...++..
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf 271 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYF 271 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHH
Confidence 699999999999888888888777776432 45444433 2335788999999999864 778999999999999998
Q ss_pred HHHHhhh-CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC
Q 026168 78 SNFLNQK-CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD 156 (242)
Q Consensus 78 ~~~L~~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~ 156 (242)
+..|..- .+..+..+||.|++..|..+++.|.+..-.+|+|||+++||||+|+|++||+||+|.+++.|+||+||+||.
T Consensus 272 ~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 272 GKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred HHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhc
Confidence 8888763 367789999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcHHHHHHHHHc
Q 026168 157 NLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 157 g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
|+.|.+++|+.+++..++ .+++-
T Consensus 352 gr~G~Aivfl~p~E~aYv-eFl~i 374 (567)
T KOG0345|consen 352 GREGNAIVFLNPREEAYV-EFLRI 374 (567)
T ss_pred cCccceEEEecccHHHHH-HHHHh
Confidence 999999999999665544 44443
No 34
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=205.49 Aligned_cols=171 Identities=23% Similarity=0.281 Sum_probs=150.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCC--CCCCeEEE-EEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSF--DRPNLKYE-VIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~--~r~~i~~~-v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
++||||++.++...-..+++.|....+..+. ...++.+. +..++.+|+..++.+++-..-.++.|||+||.+.+.++
T Consensus 205 ~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrL 284 (569)
T KOG0346|consen 205 FLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRL 284 (569)
T ss_pred eeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHH
Confidence 4899999999988777788877776666443 23455544 44478899999999998777889999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----------------------------------cc
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----------------------------------AF 122 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----------------------------------~~ 122 (242)
.-+|.. +|++...++|.|+.+.|..++++|+.|-++++|||| ..
T Consensus 285 kLfLeq-FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GV 363 (569)
T KOG0346|consen 285 KLFLEQ-FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGV 363 (569)
T ss_pred HHHHHH-hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhch
Confidence 999977 799999999999999999999999999999999997 35
Q ss_pred cccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 123 GMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 123 ~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+||||+.+|..|+|||+|.+...|+||+||++|++++|.++.|+.+.+..
T Consensus 364 sRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 364 SRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 69999999999999999999999999999999999999999999998766
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=211.63 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=153.4
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEec-CC--CCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLET-SF--DRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~--~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+||||.+..+.+.+...+.....+++.. +. ..-...+.+..++..|+-.+..++... -.++++||+.+.+.|..|+
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHH
Confidence 5899999999999888887776666653 22 233344455568889999999999876 6778999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
..|..--++.+.++||..++.+|..++++|+.|+++|||||++++||+|+.+++.|||||+|.+..+|+||+||+||+|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 99943238899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
.|.|++||+..+...++.+.
T Consensus 485 ~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred CcceEEEeccccchhhhhHH
Confidence 99999999998888665544
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=6.9e-28 Score=224.53 Aligned_cols=164 Identities=17% Similarity=0.263 Sum_probs=129.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC-CCCCCeEEEEEec-----------------ChhHHHHHHHHHhcccCCC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS-FDRPNLKYEVIGK-----------------SKEALKQIGQLIKDRFKDQ 62 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~-~~r~~i~~~v~~~-----------------~~~~~~~l~~~l~~~~~~~ 62 (242)
|++|||++... +.+..+++.+. .++... ..+....+.++.. ..++...+..+++ .+.
T Consensus 198 i~~SATi~n~~-~~~~~l~g~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~ 272 (742)
T TIGR03817 198 VLASATTADPA-AAASRLIGAPV-VAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA---EGA 272 (742)
T ss_pred EEEecCCCCHH-HHHHHHcCCCe-EEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH---CCC
Confidence 57999998874 45667777653 333322 2222333332211 1134444555554 357
Q ss_pred cEEEEeCchHHHHHHHHHHhhh-------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEE
Q 026168 63 CGIIYCLSKNECVEVSNFLNQK-------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVI 135 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi 135 (242)
++||||+|++.++.++..|.+. ++.++..|||++++++|.+++++|++|++++||||+++++|||+|++++||
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI 352 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV 352 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE
Confidence 8999999999999999988763 246788999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 136 HNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 136 ~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
++|.|.+..+|+||+||+||.|+.|.++++....
T Consensus 353 ~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 353 IAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred EeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 9999999999999999999999999999998743
No 37
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.5e-27 Score=194.77 Aligned_cols=174 Identities=20% Similarity=0.323 Sum_probs=154.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+++|||+|..+.....+++..|..+.+.. ..+..-+++..+. ..++|+..|..+.. ...+.+||||+++.+..+.
T Consensus 204 ~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~ 280 (397)
T KOG0327|consen 204 VLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLT 280 (397)
T ss_pred eeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH---hhhcceEEecchhhHHHHH
Confidence 58999999999999999999988887773 4455556655444 34458888888876 5667899999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
..|.. .+..+..+||.|.+.+|..++..|++|..+|||+|+.+++|+|+..+..||||++|...++|+||+||+||.|+
T Consensus 281 ~~L~~-~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~gr 359 (397)
T KOG0327|consen 281 DKLRA-HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR 359 (397)
T ss_pred HHHhh-CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCC
Confidence 99966 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
+|.++.++...+...++++.
T Consensus 360 kg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 360 KGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred CceeeeeehHhhHHHHHhHH
Confidence 99999999998888766554
No 38
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=198.08 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=157.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEE--EecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEV--IGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v--~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||++..+...++.+|..|..++.. .......|.+.| .+++..|+..|++-|..-...+++|||+..+..++++
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i 484 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEI 484 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHH
Confidence 6899999999999999999988766554 345566676665 4478889988888877666778999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
+..|..+ ++++..+||.+.+.+|.+++..|+.+...|||+||++.+|+|+|++..|||||+-.+++.|.||+||+||.|
T Consensus 485 ~a~Lklk-~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag 563 (731)
T KOG0339|consen 485 AANLKLK-GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAG 563 (731)
T ss_pred HHHhccc-cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccc
Confidence 9999876 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~~ 178 (242)
..|.++.|+++++....-.++
T Consensus 564 ~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 564 EKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred ccceeeEEechhhHHHhhHHH
Confidence 999999999999987544443
No 39
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=197.29 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=138.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC--------------------------CCCCCeEEEEE-ecChhHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS--------------------------FDRPNLKYEVI-GKSKEALKQIGQ 53 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~--------------------------~~r~~i~~~v~-~~~~~~~~~l~~ 53 (242)
|++|||++..+.+.....|..|..+-...+ ..+.++.+++. ..++-++-.|..
T Consensus 335 mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa 414 (708)
T KOG0348|consen 335 MLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAA 414 (708)
T ss_pred HhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHH
Confidence 689999999998877777666544331110 01223333322 235556666666
Q ss_pred HHhcc---cCCCcEEEEeCchHHHHHHHHHHhhhC---------------------CCcEEEEcCCCCHHHHHHHHHHHh
Q 026168 54 LIKDR---FKDQCGIIYCLSKNECVEVSNFLNQKC---------------------KIKTVYYHAGLAARQRVVVQKKWH 109 (242)
Q Consensus 54 ~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~~---------------------~~~~~~~h~~~~~~~r~~~~~~f~ 109 (242)
+|... ...+++|||+.+.+.++.-++.|...+ +.++.-+||+|++.+|..++..|.
T Consensus 415 ~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs 494 (708)
T KOG0348|consen 415 LLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFS 494 (708)
T ss_pred HHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhc
Confidence 66432 256689999999999999888876521 245788999999999999999999
Q ss_pred CCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHH
Q 026168 110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 110 ~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~ 177 (242)
...-.||+|||+++||+|+|+|.+||+||.|.+..+|+||+||++|.|..|.+++|+.|.+.+.+..+
T Consensus 495 ~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 495 HSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred cccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999998854433
No 40
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=7.9e-25 Score=198.17 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=130.7
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEec--CCCCCCeEEEEEecChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLET--SFDRPNLKYEVIGKSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~--~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~ 78 (242)
.||||++.. .+.+.+.+++. ++.+.. +..+......+.....+|+..|..++.... .+.++||||+|++.++.++
T Consensus 413 GmTGTa~~~-~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 413 GMTGTAREV-AGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred cccCcChHH-HHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 589999976 45666666664 344432 222222233344456788999988887532 3578999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---Ccc-----EEEEeCCCCCHHHHHHHh
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---DVR-----FVIHNTLSKSIESYYQES 150 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---~v~-----~Vi~~~~p~~~~~y~Qr~ 150 (242)
..|.+. ++++..+||.+++ |+..+..|+.+..+|+|||++++||+|++ +|. +||+++.|.+...|.||+
T Consensus 491 ~~L~~~-gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~ 567 (656)
T PRK12898 491 ALLREA-GLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLA 567 (656)
T ss_pred HHHHHC-CCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhc
Confidence 999985 9999999998654 55556666666678999999999999999 776 999999999999999999
Q ss_pred hccCCCCCCceEEEEeecCcH
Q 026168 151 GRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 151 GR~gR~g~~g~~i~l~~~~~~ 171 (242)
||+||.|.+|.+++|++..|.
T Consensus 568 GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 568 GRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ccccCCCCCeEEEEEechhHH
Confidence 999999999999999997653
No 41
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.93 E-value=9.4e-26 Score=198.13 Aligned_cols=175 Identities=18% Similarity=0.303 Sum_probs=150.4
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecC---------hhHHHHHHHHHhcccCCCcEEEEeCc
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKS---------KEALKQIGQLIKDRFKDQCGIIYCLS 70 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~---------~~~~~~l~~~l~~~~~~~~~iIF~~~ 70 (242)
+++|||.|..+-..+.++|..|..+.+.. .+..-.|++.+.... ..+++.|-.+++. .+-.++||||+.
T Consensus 203 ~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~-ipy~QAlVF~~~ 281 (980)
T KOG4284|consen 203 AAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS-IPYVQALVFCDQ 281 (980)
T ss_pred eEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh-CchHHHHhhhhh
Confidence 58999999999999999999887776664 344556766665422 2366667666664 366789999999
Q ss_pred hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHh
Q 026168 71 KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQES 150 (242)
Q Consensus 71 ~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~ 150 (242)
...|+-++.+|... |+.+.++.|.|++++|..+++.++.-..+|||+||..+||||-+++++|||.|.|.+-++|.||+
T Consensus 282 ~sra~~~a~~L~ss-G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRI 360 (980)
T KOG4284|consen 282 ISRAEPIATHLKSS-GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRI 360 (980)
T ss_pred hhhhhHHHHHhhcc-CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHh
Confidence 99999999999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEEeecCcH-HHHHHH
Q 026168 151 GRAGRDNLPSVCIVLYQKKDF-SRVVCM 177 (242)
Q Consensus 151 GR~gR~g~~g~~i~l~~~~~~-~~~~~~ 177 (242)
|||||.|..|.+++|+..+.. +.+..+
T Consensus 361 GRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 361 GRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999987654 443333
No 42
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=205.43 Aligned_cols=172 Identities=18% Similarity=0.285 Sum_probs=153.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
++||||.|..+.....+.+..|..+++.. +..-.++.+.+.. .+.+|+..|+++|.......++||||.+...|..+
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL 629 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence 47999999999999999999776665553 4445566655443 58899999999999888899999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
.+.|.+ .++.+..+||+.++.+|..++++|++|.+.+||||+.+++|+|++++.+||||++|...++|+||+||+||.|
T Consensus 630 ~~~L~~-ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgrag 708 (997)
T KOG0334|consen 630 LRDLQK-AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAG 708 (997)
T ss_pred HHHHHh-cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCC
Confidence 999987 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHH
Q 026168 158 LPSVCIVLYQKKDFSR 173 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~ 173 (242)
++|.|++|+++.+...
T Consensus 709 rkg~AvtFi~p~q~~~ 724 (997)
T KOG0334|consen 709 RKGAAVTFITPDQLKY 724 (997)
T ss_pred ccceeEEEeChHHhhh
Confidence 9999999999965554
No 43
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=191.91 Aligned_cols=181 Identities=20% Similarity=0.249 Sum_probs=148.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC-----CCCCCeEEE-EEecChhHHHHHHHHHhcccCCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS-----FDRPNLKYE-VIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~-----~~r~~i~~~-v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~ 74 (242)
|++|||++....+...-.++.|....+..+ ..++.+.+. +......+...+..++... ...++|+|+++...+
T Consensus 364 L~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSA 442 (620)
T ss_pred hhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHH
Confidence 578999988776666667777755443321 223444433 3334455666777777653 677899999999999
Q ss_pred HHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhh
Q 026168 75 VEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESG 151 (242)
Q Consensus 75 ~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~G 151 (242)
.+++..|+- ..+.++..|.|+++.+.|.+.+..|..|.++||||||+++||||+.+|+.|||||.|.+..+|+||+|
T Consensus 443 ~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~G 522 (620)
T KOG0350|consen 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAG 522 (620)
T ss_pred HHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhc
Confidence 999998872 23667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEeecCcHHHHHHHHHcCC
Q 026168 152 RAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQ 182 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~~~~~~~~~~~~~ 182 (242)
|++|+|+.|.|+.+.+..+...+.++++...
T Consensus 523 RTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 523 RTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred ccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999999999999999998887643
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=2.9e-24 Score=202.85 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=131.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecChhH-HHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSKEA-LKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~~~-~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
|+||||+++...... ..+..++..+.. +..+..+.+.+....... ...+...+ ..+++++|||++++.++.++
T Consensus 603 L~~SATpiprtl~~~--l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~ 677 (926)
T TIGR00580 603 LTLSATPIPRTLHMS--MSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRREL---LRGGQVFYVHNRIESIEKLA 677 (926)
T ss_pred EEEecCCCHHHHHHH--HhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHH
Confidence 589999888765543 334445555553 455667777665533322 22233322 25678999999999999999
Q ss_pred HHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-CHHHHHHHhhccCCC
Q 026168 79 NFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK-SIESYYQESGRAGRD 156 (242)
Q Consensus 79 ~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~-~~~~y~Qr~GR~gR~ 156 (242)
+.|++.+ +.++..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||+++.|. ++.+|+||+||+||.
T Consensus 678 ~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~ 757 (926)
T TIGR00580 678 TQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS 757 (926)
T ss_pred HHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCC
Confidence 9998742 67899999999999999999999999999999999999999999999999999975 789999999999999
Q ss_pred CCCceEEEEeecC
Q 026168 157 NLPSVCIVLYQKK 169 (242)
Q Consensus 157 g~~g~~i~l~~~~ 169 (242)
|+.|.|++++.+.
T Consensus 758 g~~g~aill~~~~ 770 (926)
T TIGR00580 758 KKKAYAYLLYPHQ 770 (926)
T ss_pred CCCeEEEEEECCc
Confidence 9999999998653
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=8.3e-24 Score=203.55 Aligned_cols=164 Identities=17% Similarity=0.172 Sum_probs=128.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecCh-hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSK-EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~-~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
|+||||+++.+.......+. ++.++.. +..+..+.+.+..... .....++..+ ..+++++|||++++.++.++
T Consensus 752 Ll~SATpiprtl~l~~~gl~--d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el---~r~gqv~vf~n~i~~ie~la 826 (1147)
T PRK10689 752 LTLTATPIPRTLNMAMSGMR--DLSIIATPPARRLAVKTFVREYDSLVVREAILREI---LRGGQVYYLYNDVENIQKAA 826 (1147)
T ss_pred EEEcCCCCHHHHHHHHhhCC--CcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHH
Confidence 58999999887766555443 4445543 3445666655544222 1222222222 24678999999999999999
Q ss_pred HHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC-CCHHHHHHHhhccCCC
Q 026168 79 NFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS-KSIESYYQESGRAGRD 156 (242)
Q Consensus 79 ~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p-~~~~~y~Qr~GR~gR~ 156 (242)
+.|.+.+ +.++..+||+|++++|.+++.+|++|+++|||||+++++|+|+|++++||..+.+ .++.+|+||+||+||.
T Consensus 827 ~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~ 906 (1147)
T PRK10689 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 (1147)
T ss_pred HHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCC
Confidence 9998753 6789999999999999999999999999999999999999999999999965543 4678899999999999
Q ss_pred CCCceEEEEeecC
Q 026168 157 NLPSVCIVLYQKK 169 (242)
Q Consensus 157 g~~g~~i~l~~~~ 169 (242)
|+.|.|++++.+.
T Consensus 907 g~~g~a~ll~~~~ 919 (1147)
T PRK10689 907 HHQAYAWLLTPHP 919 (1147)
T ss_pred CCceEEEEEeCCC
Confidence 9999999998653
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=1.4e-23 Score=194.74 Aligned_cols=163 Identities=20% Similarity=0.339 Sum_probs=125.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCch-------
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSK------- 71 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~------- 71 (242)
|+||||..+.... ....+......+.. +..+..+...+.... ....+...+... ..+.+++|||+..
T Consensus 413 L~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~--~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~ 488 (681)
T PRK10917 413 LVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDS--RRDEVYERIREEIAKGRQAYVVCPLIEESEKLD 488 (681)
T ss_pred EEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcc--cHHHHHHHHHHHHHcCCcEEEEEcccccccchh
Confidence 5899998877543 23344444444443 455666766655422 222233333221 2567899999854
Q ss_pred -HHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-CHHHHHH
Q 026168 72 -NECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK-SIESYYQ 148 (242)
Q Consensus 72 -~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~-~~~~y~Q 148 (242)
..++.+++.|.+.+ +..+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+++.|. +.+.|.|
T Consensus 489 ~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ 568 (681)
T PRK10917 489 LQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQ 568 (681)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHH
Confidence 45667788887654 37899999999999999999999999999999999999999999999999999986 6899999
Q ss_pred HhhccCCCCCCceEEEEee
Q 026168 149 ESGRAGRDNLPSVCIVLYQ 167 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~ 167 (242)
++||+||.|.+|.|+++++
T Consensus 569 ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 569 LRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HhhcccCCCCceEEEEEEC
Confidence 9999999999999999995
No 47
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.92 E-value=4.9e-24 Score=202.26 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=96.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC-----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC-----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFV 134 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~V 134 (242)
...++||||+|++.++.++..|.+.+ +..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 35789999999999999999998642 3679999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhccCCC-CCCceEEEEee
Q 026168 135 IHNTLSKSIESYYQESGRAGRD-NLPSVCIVLYQ 167 (242)
Q Consensus 135 i~~~~p~~~~~y~Qr~GR~gR~-g~~g~~i~l~~ 167 (242)
|+++.|.++.+|+||+||+||. |..+.++++..
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999997 44445544443
No 48
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=5.5e-24 Score=194.94 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=125.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecC----------hhHHHHHHHHHhcc--cCCCcEEEEe
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS----------KEALKQIGQLIKDR--FKDQCGIIYC 68 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~----------~~~~~~l~~~l~~~--~~~~~~iIF~ 68 (242)
++||||+|.++.. +.++++.+..+.+.. .....+++...... ......+...+... ..++++|||+
T Consensus 325 ILmSATl~~dv~~-l~~~~~~p~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFl 402 (675)
T PHA02653 325 FLMTATLEDDRDR-IKEFFPNPAFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFV 402 (675)
T ss_pred EEEccCCcHhHHH-HHHHhcCCcEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEE
Confidence 5899999988754 578887655554432 22244544433211 11112233333221 1356899999
Q ss_pred CchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHH-hCCCccEEEEeccccccccccCccEEEEeC---CCC--
Q 026168 69 LSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKW-HTGDVQIVCATIAFGMGIDKPDVRFVIHNT---LSK-- 141 (242)
Q Consensus 69 ~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f-~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~---~p~-- 141 (242)
+++++++.+++.|.+.. +..+..+||+|++. ++.++.| ++|+.+|||||+++++|+|+|+|++||++| .|.
T Consensus 403 pg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~ 480 (675)
T PHA02653 403 ASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPF 480 (675)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcc
Confidence 99999999999998753 58899999999985 4667777 689999999999999999999999999999 665
Q ss_pred -------CHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 142 -------SIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 142 -------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+.++|+||+||+||. ++|.|+.|++..+..
T Consensus 481 ~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 481 GGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred cCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 888999999999999 799999999887643
No 49
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.91 E-value=8.1e-24 Score=183.26 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=115.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEE--Ee-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEV--IG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v--~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
++||||+|..+.+.+...........+.....+....+.+ .. ....+...+..+++....++++||||+|++.++.+
T Consensus 159 i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~ 238 (358)
T TIGR01587 159 LLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEF 238 (358)
T ss_pred EEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHH
Confidence 5899999977665555443222111111111110111111 11 22234455555554433578999999999999999
Q ss_pred HHHHhhhC-CCcEEEEcCCCCHHHHHHH----HHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhc
Q 026168 78 SNFLNQKC-KIKTVYYHAGLAARQRVVV----QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGR 152 (242)
Q Consensus 78 ~~~L~~~~-~~~~~~~h~~~~~~~r~~~----~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR 152 (242)
++.|.+.. ...+..+||++++.+|.+. ++.|++|+.+|||||+++++|+|++ +++||++..| +++|+||+||
T Consensus 239 ~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR 315 (358)
T TIGR01587 239 YQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGR 315 (358)
T ss_pred HHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhcc
Confidence 99998742 2359999999999999764 8899999999999999999999996 8889988766 7899999999
Q ss_pred cCCCCCC----ceEEEEeecC
Q 026168 153 AGRDNLP----SVCIVLYQKK 169 (242)
Q Consensus 153 ~gR~g~~----g~~i~l~~~~ 169 (242)
+||.|+. |..+++....
T Consensus 316 ~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 316 LHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ccCCCCCCCCCCeEEEEeecC
Confidence 9998854 2556665543
No 50
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.9e-23 Score=190.83 Aligned_cols=163 Identities=22% Similarity=0.247 Sum_probs=132.7
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+ .+.+.+..+++ ++.-|+.+|.++ ..+.....+|+..|...+... ..+.++||||+|++.++.
T Consensus 368 GmTGTa~t~-~~e~~~~Y~l~---v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~ 443 (790)
T PRK09200 368 GMTGTAKTE-EKEFFEVYNME---VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSET 443 (790)
T ss_pred ccCCCChHH-HHHHHHHhCCc---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 589998544 34455555443 333455555544 344556678888888888642 367899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccc---cCcc-----EEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDK---PDVR-----FVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~---p~v~-----~Vi~~~~p~~~~~y~Q 148 (242)
++..|.+. ++++..+||.+.+.++..+...+..| +|+|||++++||+|+ |+|. +||+++.|.+...|.|
T Consensus 444 l~~~L~~~-gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~q 520 (790)
T PRK09200 444 FSKLLDEA-GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQ 520 (790)
T ss_pred HHHHHHHC-CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHH
Confidence 99999985 99999999999988888777777666 799999999999999 6998 9999999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCcH
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|+||+||.|.+|.++.|++..+.
T Consensus 521 r~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 521 LRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred hhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999987554
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=1.6e-23 Score=203.37 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=119.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCC-CCeEEEEEecChh--------------------HHHHH-HHHHhc
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDR-PNLKYEVIGKSKE--------------------ALKQI-GQLIKD 57 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r-~~i~~~v~~~~~~--------------------~~~~l-~~~l~~ 57 (242)
|+||||+++. +.+.++|+...++.+. .+..+ .++...+...+.. ....+ ..++..
T Consensus 163 IgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 163 IGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred EEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 6899999874 4667788765444333 22222 3344332111110 00111 122222
Q ss_pred ccCCCcEEEEeCchHHHHHHHHHHhhhCC--------------------------------CcEEEEcCCCCHHHHHHHH
Q 026168 58 RFKDQCGIIYCLSKNECVEVSNFLNQKCK--------------------------------IKTVYYHAGLAARQRVVVQ 105 (242)
Q Consensus 58 ~~~~~~~iIF~~~~~~~~~l~~~L~~~~~--------------------------------~~~~~~h~~~~~~~r~~~~ 105 (242)
.....++||||||++.++.++..|++... ..+..|||+|++++|..++
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 22467899999999999999999875311 1256899999999999999
Q ss_pred HHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC-CCCceEEEEe
Q 026168 106 KKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD-NLPSVCIVLY 166 (242)
Q Consensus 106 ~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~-g~~g~~i~l~ 166 (242)
+.|++|++++||||+.+++|||++++++||+++.|.++.+|+||+||+||. |..+.++++.
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999997 4455666443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=5.1e-23 Score=189.68 Aligned_cols=163 Identities=17% Similarity=0.295 Sum_probs=123.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCch-------
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSK------- 71 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~------- 71 (242)
|+||||.++..... ...+.-....+. .+..+..+...+.... .+ ..++..+.+. ..+.+++|||+..
T Consensus 390 l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~-~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~ 465 (630)
T TIGR00643 390 LVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHD-EK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLD 465 (630)
T ss_pred EEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcc-hH-HHHHHHHHHHHHhCCcEEEEEccccccccch
Confidence 58999987764332 223333333333 3444556666555422 22 3444444332 2567899999875
Q ss_pred -HHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-CHHHHHH
Q 026168 72 -NECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK-SIESYYQ 148 (242)
Q Consensus 72 -~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~-~~~~y~Q 148 (242)
..++.+++.|.+.+ +..+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +.++|.|
T Consensus 466 ~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ 545 (630)
T TIGR00643 466 LKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQ 545 (630)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHH
Confidence 45667777777543 67899999999999999999999999999999999999999999999999999986 7899999
Q ss_pred HhhccCCCCCCceEEEEee
Q 026168 149 ESGRAGRDNLPSVCIVLYQ 167 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~ 167 (242)
|+||+||.|.+|.|++++.
T Consensus 546 ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 546 LRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HhhhcccCCCCcEEEEEEC
Confidence 9999999999999999993
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=2.8e-23 Score=194.31 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=126.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHH-----HHHHHHHhcccCCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEAL-----KQIGQLIKDRFKDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~-----~~l~~~l~~~~~~~~~iIF~~~~~~~ 74 (242)
|+||||++... +.++++....+.+..... .+++.+.. ...+++ ..+..++.. ..+++|||+++.+++
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr~~--pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGRSF--PVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEI 222 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCcce--eeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 58999999764 467776543333332222 23333333 222222 223334432 357899999999999
Q ss_pred HHHHHHHhhhC--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-----------
Q 026168 75 VEVSNFLNQKC--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK----------- 141 (242)
Q Consensus 75 ~~l~~~L~~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~----------- 141 (242)
+.+++.|.+.+ ++.+..+||+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||++|.|.
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 99999998632 67899999999999999999999999999999999999999999999999999985
Q ss_pred -------CHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 142 -------SIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 142 -------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
|.++|.||+||+||. .+|.|+.+|+..+...
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 235699999999999 7999999998876543
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=2.8e-22 Score=188.04 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=102.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC-----------------------------------CCcEEEEcCCCCHHHHHHH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC-----------------------------------KIKTVYYHAGLAARQRVVV 104 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~-----------------------------------~~~~~~~h~~~~~~~r~~~ 104 (242)
.++++||||+|++.++.++..|.... ...++++||+|++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 56789999999999999988776421 1368999999999999999
Q ss_pred HHHHhCCCccEEEEeccccccccccCccEEEE----eC-----CCCCHHHHHHHhhccCCCCCC--ceEEEEeecCc-HH
Q 026168 105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH----NT-----LSKSIESYYQESGRAGRDNLP--SVCIVLYQKKD-FS 172 (242)
Q Consensus 105 ~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~----~~-----~p~~~~~y~Qr~GR~gR~g~~--g~~i~l~~~~~-~~ 172 (242)
++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|.||+|||||.|.. |.++++....+ ..
T Consensus 322 e~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 401 (737)
T PRK02362 322 EDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELD 401 (737)
T ss_pred HHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHH
Confidence 99999999999999999999999999999997 65 688999999999999999864 99999987653 22
Q ss_pred -HHHHHHH
Q 026168 173 -RVVCMLR 179 (242)
Q Consensus 173 -~~~~~~~ 179 (242)
.+...+.
T Consensus 402 ~~~~~~l~ 409 (737)
T PRK02362 402 ELFERYIW 409 (737)
T ss_pred HHHHHHHh
Confidence 3445553
No 55
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.90 E-value=7.6e-24 Score=183.31 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=112.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~ 139 (242)
-++++|||||+++.+.+|+-+|+. +++....+|+.|.+++|.+.+++|++....||||||+++||+|+|+|.+||||-+
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~-L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNN-LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec
Confidence 467899999999999999999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHH
Q 026168 140 SKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 140 p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~ 179 (242)
|.+.+-|+||.||++|++..|..++++.|.+...++++-.
T Consensus 541 PrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred CCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHH
Confidence 9999999999999999999999999999999887666543
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.89 E-value=5.7e-23 Score=192.48 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=125.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHHH-----HHHHHHhcccCCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALK-----QIGQLIKDRFKDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~~-----~l~~~l~~~~~~~~~iIF~~~~~~~ 74 (242)
|+||||++.. .+.+++.....+.+..... .+++.+.. ...+++. .+..++.. ..+.+|||+++.+++
T Consensus 153 ilmSATl~~~---~l~~~~~~~~~I~~~gr~~--pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei 225 (812)
T PRK11664 153 LIMSATLDND---RLQQLLPDAPVIVSEGRSF--PVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEI 225 (812)
T ss_pred EEEecCCCHH---HHHHhcCCCCEEEecCccc--cceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHH
Confidence 5899999876 3456665443333332222 24443333 2223332 23344432 367899999999999
Q ss_pred HHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCC----------
Q 026168 75 VEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKS---------- 142 (242)
Q Consensus 75 ~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~---------- 142 (242)
+.+++.|... .++.+..+||+|++++|.+++..|.+|+.+|||||+++++|||+|+|++||++|.+..
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 9999999863 2677899999999999999999999999999999999999999999999999888753
Q ss_pred --------HHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 143 --------IESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 143 --------~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
.++|.||+||+||. .+|.|+.+|+..+..
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 36899999999999 699999999987654
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.89 E-value=2.4e-22 Score=185.90 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=117.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHhc--ccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIKD--RFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~~--~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||+|.++.+....++..+..+.+. .....+++.+.+......++..+...+.. ...++++||||||++.++.+
T Consensus 209 LLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L 288 (844)
T TIGR02621 209 VELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKV 288 (844)
T ss_pred EEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHH
Confidence 5899999998877666666554433332 22233444444333334444443332211 12467899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHH-----HHHHHHhC----CC-------ccEEEEeccccccccccCccEEEEeCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRV-----VVQKKWHT----GD-------VQIVCATIAFGMGIDKPDVRFVIHNTLSK 141 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~-----~~~~~f~~----g~-------~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~ 141 (242)
++.|.+. ++ ..+||.|++.+|. .+++.|++ |. .+|||||+++++|+|++. ++||++..|
T Consensus 289 ~~~L~~~-g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP- 363 (844)
T TIGR02621 289 FAKLPKE-KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP- 363 (844)
T ss_pred HHHHHhc-CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC-
Confidence 9999864 54 8999999999999 78999987 44 689999999999999986 888887765
Q ss_pred CHHHHHHHhhccCCCCCC-ceEEEEeec
Q 026168 142 SIESYYQESGRAGRDNLP-SVCIVLYQK 168 (242)
Q Consensus 142 ~~~~y~Qr~GR~gR~g~~-g~~i~l~~~ 168 (242)
+++|+||+||+||.|+. +..+.++..
T Consensus 364 -~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 364 -FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred -HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 69999999999999975 444555543
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=9.8e-22 Score=180.23 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=131.3
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+.+..+++ ++.-|+.+|.++. .++....+|+..+...+.+. ..+.++||||+|++.++.
T Consensus 364 GmTGTa~~~~-~Ef~~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ 439 (762)
T TIGR03714 364 GMTGTGKVAE-KEFIETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEI 439 (762)
T ss_pred ccCCCChhHH-HHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHH
Confidence 4889986543 3444544443 3444555555443 45556778999998888643 367899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---------CccEEEEeCCCCCHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---------DVRFVIHNTLSKSIESYY 147 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---------~v~~Vi~~~~p~~~~~y~ 147 (242)
++..|.+. |+++..+||.+++.++..+...++.| +|+|||++++||+|+| ++.+|++++.|....+ .
T Consensus 440 ls~~L~~~-gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~ 515 (762)
T TIGR03714 440 YSELLLRE-GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-L 515 (762)
T ss_pred HHHHHHHC-CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-H
Confidence 99999885 99999999999998887777766666 7999999999999999 9999999999998777 9
Q ss_pred HHhhccCCCCCCceEEEEeecCcH
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
||+||+||.|.+|.++.|++..+.
T Consensus 516 qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 516 QLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HhhhcccCCCCceeEEEEEccchh
Confidence 999999999999999999987664
No 59
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.89 E-value=7.3e-22 Score=146.40 Aligned_cols=129 Identities=32% Similarity=0.450 Sum_probs=115.4
Q ss_pred eEEEEEecChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCcc
Q 026168 36 LKYEVIGKSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ 114 (242)
Q Consensus 36 i~~~v~~~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 114 (242)
+.+.+...+..+...+..++.... .++++||||++.+.++.+++.|.+ .+..+..+||++++.+|..+++.|.+|...
T Consensus 2 i~~~~~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 2 IKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred cEEEEEECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 455555555578888888887543 467899999999999999999987 488899999999999999999999999999
Q ss_pred EEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEE
Q 026168 115 IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165 (242)
Q Consensus 115 vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l 165 (242)
+|++|.++++|+|+|++++||.++.|++..+|.|++||++|.|+.|.++++
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999999998887653
No 60
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=2e-21 Score=177.28 Aligned_cols=163 Identities=22% Similarity=0.183 Sum_probs=134.5
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+ .+.+.+..+++ ++.-|+.+|.++ -.++....+|+..+.+.+.+ +..++++||||+|++.++.
T Consensus 345 GmTGTa~te-~~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ 420 (745)
T TIGR00963 345 GMTGTAKTE-EEEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSEL 420 (745)
T ss_pred ccCCCcHHH-HHHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 489998654 34555555554 333445555444 33455567788888776643 3468899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC-------ccEEEEeCCCCCHHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD-------VRFVIHNTLSKSIESYYQE 149 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~-------v~~Vi~~~~p~~~~~y~Qr 149 (242)
++..|.+. ++++..+|+. +.+|+..+..|+.+...|+|||+++|||+|++. ..+||+++.|.+...|.|+
T Consensus 421 ls~~L~~~-gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~ 497 (745)
T TIGR00963 421 LSNLLKER-GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQL 497 (745)
T ss_pred HHHHHHHc-CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHH
Confidence 99999985 9999999999 889999999999999999999999999999998 4499999999999999999
Q ss_pred hhccCCCCCCceEEEEeecCcH
Q 026168 150 SGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 150 ~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
+||+||.|.+|.+..|++..|.
T Consensus 498 ~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 498 RGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred hccccCCCCCcceEEEEeccHH
Confidence 9999999999999999988764
No 61
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.2e-22 Score=171.07 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=150.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+|..+.+..+.-+..|..+.+.. +...++++..... ...+|...|+.++.....+++++|||.|+..++.+.
T Consensus 199 llfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 199 LLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred EEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHH
Confidence 58999999998887777665555554443 3334445444333 567888999999887666778999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
..|+.. |+.+..++|.|++.-|.....+|..++..+||.||+++||+|+|-.+.|||||+|.+..-|+||+||+.|+|+
T Consensus 279 ~ll~~~-g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 279 GLLRDF-GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred HHHHhc-CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 999985 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~ 177 (242)
.|.++.++.+.+...+..+
T Consensus 358 tg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred cceEEEEEecccchhhhhh
Confidence 9999999999887765443
No 62
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=1.4e-21 Score=184.31 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=108.8
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEecccc
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCATIAFG 123 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~~~~ 123 (242)
.|++.|..+++.. ...++||||+++..+..+++.|+...|+.+..+||+|++.+|.++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4666777777654 5779999999999999999999654699999999999999999999999974 699999999999
Q ss_pred ccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEee
Q 026168 124 MGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQ 167 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~ 167 (242)
+|+|++.+++||+||+|+++..|.||+||+||.|+++.+.+++.
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999999988766553
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.7e-21 Score=167.88 Aligned_cols=125 Identities=22% Similarity=0.386 Sum_probs=110.6
Q ss_pred ChhHHHHHHHHHhccc---CCCcEEEEeCchHHHHHHHHHHhhhCCCcEE-EEc--------CCCCHHHHHHHHHHHhCC
Q 026168 44 SKEALKQIGQLIKDRF---KDQCGIIYCLSKNECVEVSNFLNQKCKIKTV-YYH--------AGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~---~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~-~~h--------~~~~~~~r~~~~~~f~~g 111 (242)
+.+|++.+.+++++.. .+.++|||++.+++++.+..+|.+. +..+. .+- .||+|+++.+++++|++|
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~-~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G 424 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI-GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc-CCcceeEEeeccccccccccCHHHHHHHHHHHhcC
Confidence 4567888888887544 4579999999999999999999884 65553 332 479999999999999999
Q ss_pred CccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCc
Q 026168 112 DVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 112 ~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~ 170 (242)
.++|||||++++.|+|+|++++||.|+.-+|..-++||.||+||. ++|.+++|+..+.
T Consensus 425 e~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999999999999999999999999999999999999999 8999999998873
No 64
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=8.2e-21 Score=177.79 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=98.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--------------------------------CCCcEEEEcCCCCHHHHHHHHHH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--------------------------------CKIKTVYYHAGLAARQRVVVQKK 107 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--------------------------------~~~~~~~~h~~~~~~~r~~~~~~ 107 (242)
.++++||||+|++.++.++..|... +...+.++||+|++++|..+++.
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999998887666321 12358999999999999999999
Q ss_pred HhCCCccEEEEeccccccccccCccEEEE-------eCCCC-CHHHHHHHhhccCCCC--CCceEEEEeecCcH-HHHHH
Q 026168 108 WHTGDVQIVCATIAFGMGIDKPDVRFVIH-------NTLSK-SIESYYQESGRAGRDN--LPSVCIVLYQKKDF-SRVVC 176 (242)
Q Consensus 108 f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~-------~~~p~-~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~-~~~~~ 176 (242)
|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.++++....+. ..+..
T Consensus 317 F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 317 FREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred HHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH
Confidence 99999999999999999999999999994 45543 6789999999999975 67999999887653 23444
Q ss_pred HH
Q 026168 177 ML 178 (242)
Q Consensus 177 ~~ 178 (242)
.+
T Consensus 397 ~~ 398 (720)
T PRK00254 397 YI 398 (720)
T ss_pred HH
Confidence 43
No 65
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=7.9e-21 Score=174.77 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=132.3
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+ .+.+.+..+++ ++.-|+.+|.++ -.++.....|+..+.+.+.. +..++++||||+|+..++.
T Consensus 380 GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 380 GMTGTAKTE-EEEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred ccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 478998654 44555555554 333455555544 34455667888888888853 3467899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---Ccc-----EEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---DVR-----FVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---~v~-----~Vi~~~~p~~~~~y~Q 148 (242)
++..|.+. ++++..+|+.+.+.++..+...++.|. |+|||+++|||+|++ +|. +||+++.|.+...|.|
T Consensus 456 ls~~L~~~-gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Q 532 (796)
T PRK12906 456 LSHLLDEA-GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQ 532 (796)
T ss_pred HHHHHHHC-CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHH
Confidence 99999985 999999999998877777777777666 999999999999994 899 9999999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCc
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~ 170 (242)
++||+||.|.+|.+..+++..|
T Consensus 533 l~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 533 LRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999998765
No 66
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.87 E-value=6.3e-21 Score=175.77 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=131.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCC-ceEEecCCCCCCeEEEEEe--cC--------hhHHHHHHHHHhcccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPH-ALVLETSFDRPNLKYEVIG--KS--------KEALKQIGQLIKDRFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~-~~~i~~~~~r~~i~~~v~~--~~--------~~~~~~l~~~l~~~~~~~~~iIF~~ 69 (242)
|.+|||..+. ..+.++|.-.. +..+.......+.++.+.. .. ...++.+.+++++ ...+|||+|
T Consensus 187 IGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~---~~ttLIF~N 261 (814)
T COG1201 187 IGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK---HRTTLIFTN 261 (814)
T ss_pred EeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh---cCcEEEEEe
Confidence 5799999755 56677776654 5555544333344444332 11 2244555566653 448999999
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHH
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQE 149 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr 149 (242)
|+..+|.++..|++..+..+..+||+++.+.|..++++|++|+++++|||+.++.|||+.+|+.||+++.|.+++.++||
T Consensus 262 TR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQR 341 (814)
T COG1201 262 TRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQR 341 (814)
T ss_pred ChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHh
Confidence 99999999999998756899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCC-CCCceEEEEeec
Q 026168 150 SGRAGRD-NLPSVCIVLYQK 168 (242)
Q Consensus 150 ~GR~gR~-g~~g~~i~l~~~ 168 (242)
+||+|+. |..+.++++...
T Consensus 342 iGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 342 IGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccccccCCcccEEEEecC
Confidence 9999987 666777777665
No 67
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=8e-21 Score=176.18 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=133.6
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+.. .+....+++ ++.-|+.+|.++ -.++....+|+..|.+.+... ..++++||||+|++.++.
T Consensus 538 GMTGTA~te~~-Ef~~iY~L~---Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~ 613 (1025)
T PRK12900 538 GMTGTAETEAS-EFFEIYKLD---VVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSET 613 (1025)
T ss_pred ccCCCChhHHH-HHHHHhCCc---EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHH
Confidence 47888866544 344544443 333444554443 445666778999999888642 367899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---Ccc-----EEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---DVR-----FVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---~v~-----~Vi~~~~p~~~~~y~Q 148 (242)
++..|... ++++..+|+ .+.+|+..+..|+.+...|+|||+++|||+|++ +|. +||+++.|.+...|.|
T Consensus 614 Ls~~L~~~-gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Q 690 (1025)
T PRK12900 614 LSRMLRAK-RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQ 690 (1025)
T ss_pred HHHHHHHc-CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHH
Confidence 99999986 999999998 488999999999999999999999999999999 564 4599999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCcHH
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
++||+||.|.+|.++.|++..|.-
T Consensus 691 l~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 691 LRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999999886643
No 68
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=1.3e-20 Score=175.57 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=98.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC------------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC------------------------KIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 115 (242)
.++++||||++++.++.++..|.... ...+.++||+|++++|..+++.|++|.++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 56789999999999999998886531 135889999999999999999999999999
Q ss_pred EEEeccccccccccCccEEEEeCC---------CCCHHHHHHHhhccCCCCC--CceEEEEeecCc-HHHHHHHHH
Q 026168 116 VCATIAFGMGIDKPDVRFVIHNTL---------SKSIESYYQESGRAGRDNL--PSVCIVLYQKKD-FSRVVCMLR 179 (242)
Q Consensus 116 lvaT~~~~~Gid~p~v~~Vi~~~~---------p~~~~~y~Qr~GR~gR~g~--~g~~i~l~~~~~-~~~~~~~~~ 179 (242)
||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.|. .|.++++....+ ...+++++.
T Consensus 315 LvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 315 IVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred EEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc
Confidence 99999999999999876555 332 5688999999999999984 677888766544 566666664
No 69
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.86 E-value=6.7e-21 Score=182.60 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=121.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecC-----hhHHHHHHHHHhc--ccCCCcEEEEeCchHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS-----KEALKQIGQLIKD--RFKDQCGIIYCLSKNE 73 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~-----~~~~~~l~~~l~~--~~~~~~~iIF~~~~~~ 73 (242)
|+||||++.+ .+.+++.....+.+.....+..+.|.-.... .+.+..++..+.. ....+.+|||+++..+
T Consensus 222 ILmSATid~e---~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 222 IITSATIDPE---RFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGERE 298 (1294)
T ss_pred EEeeCCCCHH---HHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Confidence 5899999864 4556655433343433333333333322111 2233444433321 1245789999999999
Q ss_pred HHHHHHHHhhhCCC---cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC-----------
Q 026168 74 CVEVSNFLNQKCKI---KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL----------- 139 (242)
Q Consensus 74 ~~~l~~~L~~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~----------- 139 (242)
++.+++.|.+. +. .+..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++|.
T Consensus 299 Ie~lae~L~~~-~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 299 IRDTADALNKL-NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHHHhc-CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 99999999874 44 37789999999999999886 578899999999999999999999999873
Q ss_pred ----C---CCHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 140 ----S---KSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 140 ----p---~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
| .|.++|.||+||+||. .+|.|+.||+..++..
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 3568999999999999 7999999999876653
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.85 E-value=2.3e-20 Score=161.37 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=105.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCC------------C------C---CCeEEEEEecChhHHHH---HHHHHh
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSF------------D------R---PNLKYEVIGKSKEALKQ---IGQLIK 56 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~------------~------r---~~i~~~v~~~~~~~~~~---l~~~l~ 56 (242)
+++|||+++.+.+.+...+....++....+. . | +.+.+.+.+....+... +.+.+.
T Consensus 185 i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~ 264 (357)
T TIGR03158 185 VFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVI 264 (357)
T ss_pred EEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHH
Confidence 5899999999888888763333333222111 0 1 46666665533333332 333332
Q ss_pred cc---cCCCcEEEEeCchHHHHHHHHHHhhh-CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCcc
Q 026168 57 DR---FKDQCGIIYCLSKNECVEVSNFLNQK-CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR 132 (242)
Q Consensus 57 ~~---~~~~~~iIF~~~~~~~~~l~~~L~~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~ 132 (242)
+. .++.++||||+|++.++.++..|++. .+..+..+||.+++.+|.++ ++.+|||||+++++|+|+|.+
T Consensus 265 ~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~- 337 (357)
T TIGR03158 265 ERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD- 337 (357)
T ss_pred HHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-
Confidence 11 24678999999999999999999864 24578899999999988654 478999999999999999987
Q ss_pred EEEEeCCCCCHHHHHHHhhccC
Q 026168 133 FVIHNTLSKSIESYYQESGRAG 154 (242)
Q Consensus 133 ~Vi~~~~p~~~~~y~Qr~GR~g 154 (242)
+|| ++ |.+.++|+||+||+|
T Consensus 338 ~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eEE-EC-CCCHHHHhhhcccCC
Confidence 566 45 899999999999997
No 71
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=7.5e-20 Score=168.06 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
...++.|+..++.. ..+.++||||+|++.++.+++.|.+. ++.+..+||++++.+|.+++..|+.|++.|+|||+.++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 34555666666543 25678999999999999999999985 99999999999999999999999999999999999999
Q ss_pred ccccccCccEEEEeC-----CCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 124 MGIDKPDVRFVIHNT-----LSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~-----~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+|+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+..
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDS 556 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHH
Confidence 999999999999988 799999999999999998 689999998876544
No 72
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.84 E-value=1.5e-20 Score=127.39 Aligned_cols=77 Identities=36% Similarity=0.561 Sum_probs=73.8
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
+|+. .++.+..+||++++.+|..+++.|.+|...|||||+++++|+|+|++++||+++.|++..+|.|++||+||.|
T Consensus 2 ~L~~-~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEK-KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHH-TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHH-CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4655 4999999999999999999999999999999999999999999999999999999999999999999999986
No 73
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=7.1e-20 Score=176.06 Aligned_cols=167 Identities=19% Similarity=0.283 Sum_probs=122.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEec-----ChhHHHHHHHHHhcc--cCCCcEEEEeCchHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGK-----SKEALKQIGQLIKDR--FKDQCGIIYCLSKNE 73 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~-----~~~~~~~l~~~l~~~--~~~~~~iIF~~~~~~ 73 (242)
|+||||++.. .+.++++....+.+.....+..+.|..... ..+..+.+...+... ...+.+|||+++..+
T Consensus 215 IlmSATld~~---~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 215 IITSATIDPE---RFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred EEEeCCcCHH---HHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 5899999854 566666544334344333333444432211 113334444444321 145789999999999
Q ss_pred HHHHHHHHhhhC--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC----------
Q 026168 74 CVEVSNFLNQKC--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK---------- 141 (242)
Q Consensus 74 ~~~l~~~L~~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~---------- 141 (242)
++.+++.|.+.. +..+..+||+|++++|.++++.+ +..+|+|||+++++|+|+|+|++||++|.+.
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998642 34588999999999999886654 3469999999999999999999999999543
Q ss_pred --------CHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 142 --------SIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 142 --------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
|.++|.||.||+||.| +|.|+.+|+..+...
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 5689999999999997 999999998876653
No 74
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=4.6e-19 Score=158.48 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=141.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHh-cccCCCcEEEEeCchH------
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIK-DRFKDQCGIIYCLSKN------ 72 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~-~~~~~~~~iIF~~~~~------ 72 (242)
++||||.-|. .......+.-+..++. -++.|..|...++.. +....+++.+. +...+.++.+-|+-++
T Consensus 415 LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i~~--~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~ 490 (677)
T COG1200 415 LVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVIPH--ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLE 490 (677)
T ss_pred EEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEecc--ccHHHHHHHHHHHHHcCCEEEEEeccccccccch
Confidence 5789997666 4556666666666666 588899998888763 33333444343 2236778999998665
Q ss_pred --HHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC-CCHHHHHH
Q 026168 73 --ECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS-KSIESYYQ 148 (242)
Q Consensus 73 --~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p-~~~~~y~Q 148 (242)
.++.+++.|...+ +.++..+||.|++++++++++.|++|+++|||||.+.+.|||+|+.+++|..+.- ..++++.|
T Consensus 491 l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQ 570 (677)
T COG1200 491 LQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQ 570 (677)
T ss_pred hhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHH
Confidence 4556777777544 5679999999999999999999999999999999999999999999988887764 58999999
Q ss_pred HhhccCCCCCCceEEEEeecCc----HHHHHHHHHcCCCCChH
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKD----FSRVVCMLRNGQGFKSE 187 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~----~~~~~~~~~~~~~~~~~ 187 (242)
-.||+||++.++.|++++.++. ..+++-+-+...++...
T Consensus 571 LRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IA 613 (677)
T COG1200 571 LRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIA 613 (677)
T ss_pred hccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceeh
Confidence 9999999999999999999877 34565555555555443
No 75
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.83 E-value=7.1e-20 Score=159.76 Aligned_cols=165 Identities=23% Similarity=0.352 Sum_probs=127.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhccc-------CCCcEEEEeCchHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRF-------KDQCGIIYCLSKNE 73 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~-------~~~~~iIF~~~~~~ 73 (242)
|.+|||.-.. ..+.+.|+.. .+.+...+.+-.-+..+...+.+|++.+.++.+... -.+++|||++|++.
T Consensus 376 i~LSATVgNp--~elA~~l~a~-lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr 452 (830)
T COG1202 376 IYLSATVGNP--EELAKKLGAK-LVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRR 452 (830)
T ss_pred EEEEeecCCh--HHHHHHhCCe-eEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhh
Confidence 5789997544 3455666553 232332222222222223357788888888776433 24689999999999
Q ss_pred HHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEE---EeCCCC-CHHHHHHH
Q 026168 74 CVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVI---HNTLSK-SIESYYQE 149 (242)
Q Consensus 74 ~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi---~~~~p~-~~~~y~Qr 149 (242)
|.+++.+|... |+++.+||+||+..+|..+...|.++++.++|+|.+++.|+|+|.-.+|+ -++..| ++.+|.||
T Consensus 453 ~h~lA~~L~~k-G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM 531 (830)
T COG1202 453 CHELADALTGK-GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQM 531 (830)
T ss_pred HHHHHHHhhcC-CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHH
Confidence 99999999986 99999999999999999999999999999999999999999999766544 244454 89999999
Q ss_pred hhccCCCC--CCceEEEEeecC
Q 026168 150 SGRAGRDN--LPSVCIVLYQKK 169 (242)
Q Consensus 150 ~GR~gR~g--~~g~~i~l~~~~ 169 (242)
.|||||.+ ..|.+++++.+.
T Consensus 532 ~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hcccCCCCcccCceEEEEecCC
Confidence 99999987 569999998774
No 76
>PRK14701 reverse gyrase; Provisional
Probab=99.81 E-value=1.3e-19 Score=178.69 Aligned_cols=170 Identities=15% Similarity=0.206 Sum_probs=126.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHH---HHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNE---CVE 76 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~---~~~ 76 (242)
|++|||+++. .....++..+..+.+.. .....++.+.++....+....|..+++.. +..+||||+|++. ++.
T Consensus 273 l~~SAT~~~r--~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 273 IVASATGKAK--GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKL--GKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred EEEecCCCch--hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeccccchHHHH
Confidence 3589999864 23334443333333321 22334555555443333235677777653 4679999999875 589
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe----ccccccccccC-ccEEEEeCCCC---CHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT----IAFGMGIDKPD-VRFVIHNTLSK---SIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gid~p~-v~~Vi~~~~p~---~~~~y~Q 148 (242)
+++.|... |+++..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|
T Consensus 349 la~~L~~~-Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~ 422 (1638)
T PRK14701 349 IEKYLLED-GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDP 422 (1638)
T ss_pred HHHHHHHC-CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhccc
Confidence 99999986 9999999995 8899999999999999999 48899999999 99999999999 8887777
Q ss_pred Hh-------------hccCCCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 149 ES-------------GRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 149 r~-------------GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
.. ||+||.|.++.+++.+...+...++.++..
T Consensus 423 ~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 423 TIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred chhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 66 999999999888776666666666555543
No 77
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.81 E-value=1.3e-18 Score=160.62 Aligned_cols=122 Identities=22% Similarity=0.350 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 026168 46 EALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124 (242)
Q Consensus 46 ~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 124 (242)
..+..|...+... ..+.++||||+|++.++.+++.|... ++++..+||++++.+|..++..|+.|++.|+|||+.+++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 3455666655433 25678999999999999999999885 999999999999999999999999999999999999999
Q ss_pred cccccCccEEEEeCC-----CCCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 125 GIDKPDVRFVIHNTL-----SKSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 125 Gid~p~v~~Vi~~~~-----p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
|+|+|++++||++|. |.+..+|+||+||+||. ..|.+++|++..
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 999999999999885 78999999999999996 789999999853
No 78
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.80 E-value=2.4e-19 Score=151.98 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=103.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCC--CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEe
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCK--IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHN 137 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~ 137 (242)
...++||||.|+.+|+.|.++++++.+ +++.++||...+.||.+.++.|+.+..+.|||||+++||+|+-++.++||.
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEE
Confidence 457899999999999999999988633 679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 138 TLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 138 ~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
.+|.+...|+||+||.||+.+.|.+|.++...
T Consensus 584 tlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 584 TLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred ecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 99999999999999999999999999988643
No 79
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=1.1e-18 Score=165.06 Aligned_cols=126 Identities=21% Similarity=0.376 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCC--------CCHHHHHHHHHHHhCCCc
Q 026168 45 KEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAG--------LAARQRVVVQKKWHTGDV 113 (242)
Q Consensus 45 ~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~ 113 (242)
..|++.|.+++++. .++.++||||++++.++.+++.|... ++.+..+||. |++.+|..++++|++|+.
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~ 424 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF 424 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC
Confidence 45777787777643 36779999999999999999999764 8888888886 999999999999999999
Q ss_pred cEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 114 QIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 114 ~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+|||||+++++|+|+|++++||+||.|++...|+||+||+||.|. |.+++++.....+
T Consensus 425 ~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~e 482 (773)
T PRK13766 425 NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTRD 482 (773)
T ss_pred CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCChH
Confidence 999999999999999999999999999999999999999999864 8888888766544
No 80
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=157.60 Aligned_cols=128 Identities=22% Similarity=0.378 Sum_probs=108.4
Q ss_pred cChhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEc--------CCCCHHHHHHHHHHHh
Q 026168 43 KSKEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYH--------AGLAARQRVVVQKKWH 109 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h--------~~~~~~~r~~~~~~f~ 109 (242)
.+.++++.|.+.+.+. .+..++||||.+++.|..|..+|.+. .+.+...+- .+|++.++.++++.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 3567888888877644 35678999999999999999999842 233443333 3799999999999999
Q ss_pred CCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 110 ~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+|+++|||||+++++|+|++.+++||-||...++...+||.|| ||. +.|.++++++..+..
T Consensus 472 ~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 472 DGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred CCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 9999999999999999999999999999999999999999999 998 689999998854443
No 81
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.8e-20 Score=147.99 Aligned_cols=136 Identities=20% Similarity=0.332 Sum_probs=112.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec--CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET--SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~--~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||++.+++....++|..|..+.+.. ......+.++++. ++.+|...+.+++.. ....+++||+.+...
T Consensus 221 mmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~-LeFNQVvIFvKsv~R---- 295 (387)
T KOG0329|consen 221 MMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV-LEFNQVVIFVKSVQR---- 295 (387)
T ss_pred eeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh-hhhcceeEeeehhhh----
Confidence 68999999999999999999998888874 3455566555544 677777777777764 366789999988665
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++ | +.+ +|||++++||+|+..++.|+|||.|.+..+|+||+|||||.|
T Consensus 296 ------------------l~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfG 343 (387)
T KOG0329|consen 296 ------------------LS----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 343 (387)
T ss_pred ------------------hh----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccc
Confidence 00 2 234 899999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHH
Q 026168 158 LPSVCIVLYQKKDFSR 173 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~ 173 (242)
.+|.++.|++..+...
T Consensus 344 tkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 344 TKGLAITFVSDENDAK 359 (387)
T ss_pred cccceeehhcchhhHH
Confidence 9999999998876554
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.76 E-value=4.8e-18 Score=164.39 Aligned_cols=141 Identities=19% Similarity=0.248 Sum_probs=109.8
Q ss_pred CEEeecCChH-HHHH-HHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHH---H
Q 026168 1 MALTATATQS-VRLD-ILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNE---C 74 (242)
Q Consensus 1 i~~SAT~~~~-~~~~-~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~---~ 74 (242)
|+||||+++. ++.. +...++ +.+. ......|+.+.++... ++...|..+++.. +.++||||++++. +
T Consensus 272 ilfSAT~~~~~~~~~l~~~ll~----~~v~~~~~~~rnI~~~yi~~~-~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~a 344 (1176)
T PRK09401 272 VVSSATGRPRGNRVKLFRELLG----FEVGSPVFYLRNIVDSYIVDE-DSVEKLVELVKRL--GDGGLIFVPSDKGKEYA 344 (1176)
T ss_pred EEEeCCCCccchHHHHhhccce----EEecCcccccCCceEEEEEcc-cHHHHHHHHHHhc--CCCEEEEEecccChHHH
Confidence 5899999875 4332 222222 2222 2344567776665533 6677777877643 4579999999777 9
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEE----eccccccccccC-ccEEEEeCCCC------CH
Q 026168 75 VEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA----TIAFGMGIDKPD-VRFVIHNTLSK------SI 143 (242)
Q Consensus 75 ~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gid~p~-v~~Vi~~~~p~------~~ 143 (242)
+.+++.|... |+++..+||+| ...+++|++|+++|||| |++++||||+|+ |++|||||+|. ..
T Consensus 345 e~l~~~L~~~-gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~ 418 (1176)
T PRK09401 345 EELAEYLEDL-GINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEE 418 (1176)
T ss_pred HHHHHHHHHC-CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEecccc
Confidence 9999999985 99999999999 23459999999999999 689999999999 89999999998 66
Q ss_pred HHHHHHhhccC
Q 026168 144 ESYYQESGRAG 154 (242)
Q Consensus 144 ~~y~Qr~GR~g 154 (242)
..|.||+||+-
T Consensus 419 ~~~~~~~~r~~ 429 (1176)
T PRK09401 419 LAPPFLLLRLL 429 (1176)
T ss_pred ccCHHHHHHHH
Confidence 88999999995
No 83
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.76 E-value=1.7e-17 Score=149.49 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=95.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe-ccccccccccCccEEEEeC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT-IAFGMGIDKPDVRFVIHNT 138 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gid~p~v~~Vi~~~ 138 (242)
.+.+++||+++++.++.+++.|++. +.++..+||+++.++|..+++.|++|+..||||| +.+++|+|+|++++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~-g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKV-YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEec
Confidence 4567899999999999999999985 8999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCHHHHHHHhhccCCCCCCceEEEEe
Q 026168 139 LSKSIESYYQESGRAGRDNLPSVCIVLY 166 (242)
Q Consensus 139 ~p~~~~~y~Qr~GR~gR~g~~g~~i~l~ 166 (242)
++.+...|+||+||++|.+.......++
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999987544333333
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.75 E-value=5.7e-17 Score=152.46 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=82.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC--CCcEEEEcCCCCHHHHH----HHHHHH-hCCC---ccEEEEecccccccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC--KIKTVYYHAGLAARQRV----VVQKKW-HTGD---VQIVCATIAFGMGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~--~~~~~~~h~~~~~~~r~----~~~~~f-~~g~---~~vlvaT~~~~~Gid~p 129 (242)
.+++++|||||++.++++++.|++.. ...+..+||.+++.+|. ++++.| ++|+ ..|||||+++++|+|+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 56789999999999999999998753 25799999999999994 567778 5665 4799999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 130 DVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 130 ~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+++++|....| +..|+||+||+||.++
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 58999988777 7899999999999875
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=3.3e-17 Score=150.48 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=107.7
Q ss_pred hHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-CccEEEEecccc
Q 026168 46 EALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQIVCATIAFG 123 (242)
Q Consensus 46 ~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~ 123 (242)
.|+..+..+++.+ ..+.++||||++...++.++..|. +.++||++++.+|.++++.|+.| .+++||+|++++
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgd 553 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGD 553 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccc
Confidence 3455555566533 257799999999999888888774 45689999999999999999865 889999999999
Q ss_pred ccccccCccEEEEeCCCC-CHHHHHHHhhccCCCCCCceE-------EEEeecCcHH------HHHHHHHcCCCCCh
Q 026168 124 MGIDKPDVRFVIHNTLSK-SIESYYQESGRAGRDNLPSVC-------IVLYQKKDFS------RVVCMLRNGQGFKS 186 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~p~-~~~~y~Qr~GR~gR~g~~g~~-------i~l~~~~~~~------~~~~~~~~~~~~~~ 186 (242)
+|+|+|++++||+++.|. +..+|+||+||++|.+..|.+ +.|+++...+ +-..+++++..++.
T Consensus 554 eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~~v 630 (732)
T TIGR00603 554 TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSFKV 630 (732)
T ss_pred cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCeeEE
Confidence 999999999999999984 999999999999998765553 7777776554 23445566655433
No 86
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.75 E-value=8.3e-17 Score=151.30 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=135.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHH-HHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEAL-KQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~-~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+.||||.-|.. .-....|..+.-+|. .+.+|-.++..|.+.+..-+ +.+++.+ ..++++.--.|..+..+.++
T Consensus 746 LTLSATPIPRT--L~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~ 820 (1139)
T COG1197 746 LTLSATPIPRT--LNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL---LRGGQVFYVHNRVESIEKKA 820 (1139)
T ss_pred EEeeCCCCcch--HHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHH
Confidence 35777766654 446677777776666 46788899999887554433 3344433 46888888899999999999
Q ss_pred HHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC-CCHHHHHHHhhccCCC
Q 026168 79 NFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS-KSIESYYQESGRAGRD 156 (242)
Q Consensus 79 ~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p-~~~~~y~Qr~GR~gR~ 156 (242)
+.|++.. ..++.+.||.|++.+-+.++.+|.+|+++|||||.+.+.|||+|+++.+|.-+.. ..++++.|..||+||.
T Consensus 821 ~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS 900 (1139)
T COG1197 821 ERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS 900 (1139)
T ss_pred HHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc
Confidence 9998742 4679999999999999999999999999999999999999999999988877665 4899999999999999
Q ss_pred CCCceEEEEeecCc
Q 026168 157 NLPSVCIVLYQKKD 170 (242)
Q Consensus 157 g~~g~~i~l~~~~~ 170 (242)
++.++|+++|.+..
T Consensus 901 ~~~AYAYfl~p~~k 914 (1139)
T COG1197 901 NKQAYAYFLYPPQK 914 (1139)
T ss_pred cceEEEEEeecCcc
Confidence 99999999998643
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.3e-16 Score=146.07 Aligned_cols=163 Identities=20% Similarity=0.154 Sum_probs=132.8
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+ .+.+.+..+++ ++.-|+.+|.++. .+.....+|+..+...+.+ +..++++||||+|++.++.
T Consensus 370 GmTGTa~te-~~E~~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~ 445 (830)
T PRK12904 370 GMTGTADTE-AEEFREIYNLD---VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSEL 445 (830)
T ss_pred ccCCCcHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 478998654 34455555443 3344455555543 3555677899999888865 2367899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCc-------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDV------------------------- 131 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v------------------------- 131 (242)
++..|.+. ++++..+||. +.+|+..+..|+.+..+|+|||+++|||+|++--
T Consensus 446 Ls~~L~~~-gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~ 522 (830)
T PRK12904 446 LSKLLKKA-GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAE 522 (830)
T ss_pred HHHHHHHC-CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999985 9999999996 7899999999999999999999999999999742
Q ss_pred -------------cEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 132 -------------RFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 132 -------------~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
-+||-...|.|..---|-.||+||.|.+|.+..|++-.|-
T Consensus 523 ~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 523 WQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1899999999999999999999999999999999986653
No 88
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.74 E-value=1.3e-17 Score=113.26 Aligned_cols=81 Identities=35% Similarity=0.528 Sum_probs=76.4
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 76 EVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 76 ~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
.+++.|+.. +..+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.++.|.+...|.|++||++|
T Consensus 2 ~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 2 ELAELLKEL-GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHHHC-CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 466777774 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026168 156 DN 157 (242)
Q Consensus 156 ~g 157 (242)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 86
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=5.4e-16 Score=144.01 Aligned_cols=163 Identities=19% Similarity=0.201 Sum_probs=131.3
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+ ...+.+..+++ ++.-|+++|.++ -.++....+|+..+.+.+.. +..++|+||||+|++.++.
T Consensus 384 GMTGTa~te-~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 384 GMTGTADTE-AYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEF 459 (896)
T ss_pred cCCCCChhH-HHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 478888655 34455554443 333445555443 34566677898888877753 3478899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC--------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD-------------------------- 130 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~-------------------------- 130 (242)
++..|.+. ++++..+|+.+.+.++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 460 ls~~L~~~-gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 460 LSQLLKKE-NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHc-CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 99999985 999999999999999999999999994 9999999999999861
Q ss_pred -------cc-----EEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 131 -------VR-----FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 131 -------v~-----~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|. +||-...+.|-.-=-|-.||+||.|.+|.+..|++-.|-
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 22 788888899988889999999999999999999986553
No 90
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=148.56 Aligned_cols=166 Identities=18% Similarity=0.251 Sum_probs=117.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCce-EEe-cCCCCCCe-EEEEEe-cChh------HHHHHH-HHHhcccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPHAL-VLE-TSFDRPNL-KYEVIG-KSKE------ALKQIG-QLIKDRFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~-~i~-~~~~r~~i-~~~v~~-~~~~------~~~~l~-~~l~~~~~~~~~iIF~~ 69 (242)
+++|||+|.. ..+..+++-.... ... .+..++.. .+.+.. .... .....+ ..+.....++++||||+
T Consensus 184 vgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~ 261 (766)
T COG1204 184 VGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVH 261 (766)
T ss_pred EEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 5799999987 6788888765431 111 12222221 122222 1111 112222 22223336789999999
Q ss_pred chHHHHHHHHHHhhh------------------------------------CCCcEEEEcCCCCHHHHHHHHHHHhCCCc
Q 026168 70 SKNECVEVSNFLNQK------------------------------------CKIKTVYYHAGLAARQRVVVQKKWHTGDV 113 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~------------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 113 (242)
|++.+...+..|... +...++++|++|+.++|..+.+.|+.|.+
T Consensus 262 sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~i 341 (766)
T COG1204 262 SRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKI 341 (766)
T ss_pred cCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCc
Confidence 999999999888730 01236899999999999999999999999
Q ss_pred cEEEEeccccccccccCccEEE----EeC-----CCCCHHHHHHHhhccCCCC--CCceEEEEeec
Q 026168 114 QIVCATIAFGMGIDKPDVRFVI----HNT-----LSKSIESYYQESGRAGRDN--LPSVCIVLYQK 168 (242)
Q Consensus 114 ~vlvaT~~~~~Gid~p~v~~Vi----~~~-----~p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~ 168 (242)
+||+||+.+++|+|+|.-.+|| .|+ .+.+.-+|+||.|||||.| ..|.++++.+.
T Consensus 342 kVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 342 KVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred eEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 9999999999999999777776 356 5568899999999999998 45777777733
No 91
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=5.1e-16 Score=143.86 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=131.4
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+. ..+.+..+++ ++.-|+.+|.++ -.++....+|+..+.+.+... ..++++||||.|.+.++.
T Consensus 389 GMTGTa~te~-~Ef~~iY~l~---Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ 464 (908)
T PRK13107 389 GMTGTADTEA-FEFQHIYGLD---TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSEL 464 (908)
T ss_pred cccCCChHHH-HHHHHHhCCC---EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHH
Confidence 4788887653 3455554443 333444544433 345556688888888776533 368899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC--------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD-------------------------- 130 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~-------------------------- 130 (242)
++..|... ++++..+|+.+++.++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 465 ls~~L~~~-gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 465 LARLMVKE-KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHC-CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 99999985 999999999999999999999999998 9999999999999861
Q ss_pred ------cc-----EEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 131 ------VR-----FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 131 ------v~-----~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|. +||-...+.|-.-=-|-.||+||.|.+|.+..|++-.|-
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 22 899999999988889999999999999999999987664
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=4.5e-16 Score=145.63 Aligned_cols=190 Identities=18% Similarity=0.273 Sum_probs=142.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCce--EEecCCCCCCeEEEEEe-cCh---hHHH----HHHHHHhcccCCCcEEEEeCc
Q 026168 1 MALTATATQSVRLDILKALRIPHAL--VLETSFDRPNLKYEVIG-KSK---EALK----QIGQLIKDRFKDQCGIIYCLS 70 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~--~i~~~~~r~~i~~~v~~-~~~---~~~~----~l~~~l~~~~~~~~~iIF~~~ 70 (242)
+.+|||+|.- .+...+++.+.+- .+..+..+-.++|.++. ..+ .+++ ..++-+-++....++||||-+
T Consensus 478 VGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHs 555 (1674)
T KOG0951|consen 478 VGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHS 555 (1674)
T ss_pred eeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 4699999976 6888888776543 33356666688888776 222 2222 222222233456899999999
Q ss_pred hHHHHHHHHHHhh------------------------------------hCCCcEEEEcCCCCHHHHHHHHHHHhCCCcc
Q 026168 71 KNECVEVSNFLNQ------------------------------------KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ 114 (242)
Q Consensus 71 ~~~~~~l~~~L~~------------------------------------~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 114 (242)
++++.+.|++++. -+.+.++.+|+||+..+|...++.|+.|.++
T Consensus 556 RkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 556 RKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 9999999988772 0235688999999999999999999999999
Q ss_pred EEEEeccccccccccCccEEEE----eCC------CCCHHHHHHHhhccCCCC--CCceEEEEeecCcHHHHHHHHHcCC
Q 026168 115 IVCATIAFGMGIDKPDVRFVIH----NTL------SKSIESYYQESGRAGRDN--LPSVCIVLYQKKDFSRVVCMLRNGQ 182 (242)
Q Consensus 115 vlvaT~~~~~Gid~p~v~~Vi~----~~~------p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~~~~~~~ 182 (242)
|+|+|..+++|+|+|.-.++|- |+. +.++.+.+||.||+||.+ ..|..++....+++.....++++.-
T Consensus 636 vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qL 715 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQL 715 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcC
Confidence 9999999999999998887773 332 337899999999999986 5688888888888888888777765
Q ss_pred CCChHHHHHH
Q 026168 183 GFKSEAFKTA 192 (242)
Q Consensus 183 ~~~~~~~~~~ 192 (242)
..+.....+.
T Consensus 716 piesq~~~rl 725 (1674)
T KOG0951|consen 716 PIESQFVSRL 725 (1674)
T ss_pred CChHHHHHHh
Confidence 5444433333
No 93
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=1.8e-15 Score=139.88 Aligned_cols=189 Identities=20% Similarity=0.372 Sum_probs=142.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCc---eEEecCCCCCCeEEEEEe-cCh-----------hHHHHHHHHHhcccCCCcEE
Q 026168 1 MALTATATQSVRLDILKALRIPHA---LVLETSFDRPNLKYEVIG-KSK-----------EALKQIGQLIKDRFKDQCGI 65 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~---~~i~~~~~r~~i~~~v~~-~~~-----------~~~~~l~~~l~~~~~~~~~i 65 (242)
+++|||+|.- .++..+|+-+.. ..+...+.+-.+.+.++. +.+ -.++.+.+.++ .+.+++
T Consensus 279 vgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~---~g~qVl 353 (1230)
T KOG0952|consen 279 VGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ---EGHQVL 353 (1230)
T ss_pred EEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH---cCCeEE
Confidence 5799999976 688899987522 344455556667776655 111 12334444443 678999
Q ss_pred EEeCchHHHHHHHHHHhhh----------------------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 66 IYCLSKNECVEVSNFLNQK----------------------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 66 IF~~~~~~~~~l~~~L~~~----------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
|||.+++.+.+.|+.|.+. +....+.+|+||...+|....+.|..|.++||+||..++
T Consensus 354 vFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLA 433 (1230)
T KOG0952|consen 354 VFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLA 433 (1230)
T ss_pred EEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceee
Confidence 9999999999999888752 113478899999999999999999999999999999999
Q ss_pred ccccccCccEEEEeCCC-----C------CHHHHHHHhhccCCCC--CCceEEEEeecCcHHHHHHHHHcCCCCChHHHH
Q 026168 124 MGIDKPDVRFVIHNTLS-----K------SIESYYQESGRAGRDN--LPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFK 190 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~p-----~------~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (242)
+|+|+|+-.++| .|.+ . +..+.+|..|||||.+ ..|.++++.+.+.+..+..++......+.....
T Consensus 434 wGVNLPA~aViI-KGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~ 512 (1230)
T KOG0952|consen 434 WGVNLPAYAVII-KGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLP 512 (1230)
T ss_pred eccCCcceEEEe-cCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHH
Confidence 999999665555 3333 2 5778899999999975 679999999999999999999887665544444
Q ss_pred HHHHH
Q 026168 191 TAMAQ 195 (242)
Q Consensus 191 ~~~~~ 195 (242)
...+.
T Consensus 513 ~L~dn 517 (1230)
T KOG0952|consen 513 CLIDN 517 (1230)
T ss_pred HHHHh
Confidence 44443
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=3.5e-15 Score=123.60 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=113.4
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCC---CCeEEEEEecCh-----hHHH-HHHHHHhcc-cCCCcEEEEeCc
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDR---PNLKYEVIGKSK-----EALK-QIGQLIKDR-FKDQCGIIYCLS 70 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r---~~i~~~v~~~~~-----~~~~-~l~~~l~~~-~~~~~~iIF~~~ 70 (242)
|.+|||.|.++.+.+.. +....+.+...+.+ |--++.....-. +|+. .|..+|+.+ ..+.+++||+++
T Consensus 237 IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 237 IYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 57899999887655443 22222333332222 222333333211 2222 455666543 357899999999
Q ss_pred hHHHHHHHHHHhhhCCC-cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC--CCHHHHH
Q 026168 71 KNECVEVSNFLNQKCKI-KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS--KSIESYY 147 (242)
Q Consensus 71 ~~~~~~l~~~L~~~~~~-~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p--~~~~~y~ 147 (242)
+...+.++..|+++++. .++..|+. ...|.+..+.|++|++.+||+|.+++||+.+|+|++.|.-.-- .+-+.++
T Consensus 315 I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLV 392 (441)
T COG4098 315 IETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALV 392 (441)
T ss_pred hHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHH
Confidence 99999999999775544 45888887 5578999999999999999999999999999999975543322 5889999
Q ss_pred HHhhccCCCC-CC-ceEEEEeec
Q 026168 148 QESGRAGRDN-LP-SVCIVLYQK 168 (242)
Q Consensus 148 Qr~GR~gR~g-~~-g~~i~l~~~ 168 (242)
|.+||+||.- .+ |....|...
T Consensus 393 QIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 393 QIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred HHhhhccCCCcCCCCcEEEEecc
Confidence 9999999974 33 555555433
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=5.1e-15 Score=133.08 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhC-CCcEEEEcCCCCHHHH--HHHHHHHhCCCccEEEEeccccccccccCccEEE--EeCC----CC---
Q 026168 74 CVEVSNFLNQKC-KIKTVYYHAGLAARQR--VVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVI--HNTL----SK--- 141 (242)
Q Consensus 74 ~~~l~~~L~~~~-~~~~~~~h~~~~~~~r--~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi--~~~~----p~--- 141 (242)
++++++.|++.+ +.++..+|++++...+ +++++.|.+|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 578888887754 5689999999877655 8899999999999999999999999999999886 4443 21
Q ss_pred ---CHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 142 ---SIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 142 ---~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
....|+|++||+||.+..|.+++.....+.
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 257899999999999999999876544433
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=3.1e-15 Score=134.27 Aligned_cols=127 Identities=26% Similarity=0.382 Sum_probs=97.0
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh--------------------------------------CCCcEEEEcCCCCHHHHHH
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK--------------------------------------CKIKTVYYHAGLAARQRVV 103 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~~h~~~~~~~r~~ 103 (242)
.++|||+-++++|+..|-.+.+. +.-.++.+|||+-+--++-
T Consensus 384 ~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~ 463 (1041)
T KOG0948|consen 384 LPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEV 463 (1041)
T ss_pred CceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHH
Confidence 47999999999999999666531 0123788999999999999
Q ss_pred HHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC---------CHHHHHHHhhccCCCCC--CceEEEEeecCcHH
Q 026168 104 VQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK---------SIESYYQESGRAGRDNL--PSVCIVLYQKKDFS 172 (242)
Q Consensus 104 ~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~---------~~~~y~Qr~GR~gR~g~--~g~~i~l~~~~~~~ 172 (242)
+.-.|.+|-+++|+||..+++|+|.|.-. |+...+.+ +--+|+||.|||||.|. .|.+|+.++.+-..
T Consensus 464 IEILFqEGLvKvLFATETFsiGLNMPAkT-VvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~ 542 (1041)
T KOG0948|consen 464 IEILFQEGLVKVLFATETFSIGLNMPAKT-VVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEP 542 (1041)
T ss_pred HHHHHhccHHHHHHhhhhhhhccCCccee-EEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCH
Confidence 99999999999999999999999999555 44433322 56799999999999994 58888888765444
Q ss_pred -HHHHHHHcCCCCChHHH
Q 026168 173 -RVVCMLRNGQGFKSEAF 189 (242)
Q Consensus 173 -~~~~~~~~~~~~~~~~~ 189 (242)
..+.++....+.-...|
T Consensus 543 ~~ak~m~kG~aD~LnSaF 560 (1041)
T KOG0948|consen 543 QVAKDMLKGSADPLNSAF 560 (1041)
T ss_pred HHHHHHhcCCCcchhhhh
Confidence 44555555444433333
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=139.00 Aligned_cols=122 Identities=24% Similarity=0.456 Sum_probs=103.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh-------------------------------------CCCcEEEEcCCCCHHHHHH
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK-------------------------------------CKIKTVYYHAGLAARQRVV 103 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~h~~~~~~~r~~ 103 (242)
+.++||||++++.|+.++..+... ....++++|+|++.++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 456999999999999988655431 1235789999999999999
Q ss_pred HHHHHhCCCccEEEEeccccccccccCccEEEEe---CCC-CCHHHHHHHhhccCCCC--CCceEEEEeecCcHHHHHHH
Q 026168 104 VQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHN---TLS-KSIESYYQESGRAGRDN--LPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 104 ~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~---~~p-~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~~ 177 (242)
+...|++|.+.|++||+.+..|+|.|..+++|-. +.+ .+..+|.||+|||||.| ..|.+++++.+.+...+.++
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 9999999999999999999999999998888753 222 37789999999999997 56999999999999888888
Q ss_pred HHcCC
Q 026168 178 LRNGQ 182 (242)
Q Consensus 178 ~~~~~ 182 (242)
+....
T Consensus 620 v~~~~ 624 (1008)
T KOG0950|consen 620 VNSPL 624 (1008)
T ss_pred Hhccc
Confidence 87654
No 98
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.64 E-value=3e-15 Score=145.22 Aligned_cols=129 Identities=20% Similarity=0.314 Sum_probs=96.5
Q ss_pred EEeec-CChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCch---HHHHH
Q 026168 2 ALTAT-ATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSK---NECVE 76 (242)
Q Consensus 2 ~~SAT-~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~---~~~~~ 76 (242)
++||| .|..++.. ++.....+.+. ......++.+.+.... .+...|..+++.. +.++||||+++ +.+++
T Consensus 271 ~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~~~r~I~~~~~~~~-~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 271 VSSATGRPRGKRAK---LFRELLGFEVGGGSDTLRNVVDVYVEDE-DLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred EEeCCCCccccHHH---HcccccceEecCccccccceEEEEEecc-cHHHHHHHHHHHc--CCCEEEEEeccccHHHHHH
Confidence 57999 45554432 22222223333 2344567766655422 2245566777643 46799999999 99999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe----ccccccccccC-ccEEEEeCCCC
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT----IAFGMGIDKPD-VRFVIHNTLSK 141 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gid~p~-v~~Vi~~~~p~ 141 (242)
++..|... |+++..+||++++ .++++|++|+++||||| ++++||||+|+ |++||+||+|.
T Consensus 345 l~~~L~~~-g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 345 IAEFLENH-GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHhC-CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999885 9999999999973 68999999999999995 89999999999 89999999996
No 99
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.61 E-value=3.2e-14 Score=132.18 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhhC-CCcEEEEcCCCC--HHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC--CC-----
Q 026168 73 ECVEVSNFLNQKC-KIKTVYYHAGLA--ARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS--KS----- 142 (242)
Q Consensus 73 ~~~~l~~~L~~~~-~~~~~~~h~~~~--~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p--~~----- 142 (242)
.++++++.|++.+ +.++..+|+++. .++++++++.|.+|+.+|||+|+++++|+|+|+|.+|+.++.. .+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 4667777777643 568999999986 4578899999999999999999999999999999998655543 22
Q ss_pred -----HHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHH
Q 026168 143 -----IESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 143 -----~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
...|+|++||+||.+..|.+++.....+...+..+.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 367999999999999999999877655544444333
No 100
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.6e-13 Score=119.62 Aligned_cols=121 Identities=22% Similarity=0.353 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhc-ccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccc
Q 026168 46 EALKQIGQLIKD-RFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM 124 (242)
Q Consensus 46 ~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 124 (242)
.-.+.|+.-++. ...+.+++|-+=|++.++.|.++|.+. |+++.++|+.+..-+|.+++.+.+.|.++|||.-+.+-.
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLRE 508 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc-CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhc
Confidence 344445544443 335789999999999999999999985 999999999999999999999999999999999999999
Q ss_pred cccccCccEEEEeCCCC-----CHHHHHHHhhccCCCCCCceEEEEeec
Q 026168 125 GIDKPDVRFVIHNTLSK-----SIESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 125 Gid~p~v~~Vi~~~~p~-----~~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
|+|+|.|.+|..+|..+ |-.+++|-+|||+|. -.|.++++.+.
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 99999999999888654 789999999999998 47888887654
No 101
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=134.88 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=127.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecC----------hhHHHHHHHHHhc-ccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS----------KEALKQIGQLIKD-RFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~----------~~~~~~l~~~l~~-~~~~~~~iIF~~ 69 (242)
|+.|||+... .+...++.+......+..+..+...++.+...+ .++...+..++.. ...+-++|+|+.
T Consensus 236 i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~ 314 (851)
T COG1205 236 ICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFR 314 (851)
T ss_pred EEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEe
Confidence 5789998554 356777777766664555444444444443322 1333333333321 125779999999
Q ss_pred chHHHHHHHHHHhhh---CC----CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-
Q 026168 70 SKNECVEVSNFLNQK---CK----IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK- 141 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~---~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~- 141 (242)
+++.++.++...++. .+ ..+..|+|++...+|.+++..|++|++.++++|.++..|||+.+++.||.++.|.
T Consensus 315 sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~ 394 (851)
T COG1205 315 SRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV 394 (851)
T ss_pred hhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc
Confidence 999999997333221 13 5688999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 142 SIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 142 ~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
+..++.||.||+||.++.+..++.+.....
T Consensus 395 s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 395 SVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred hHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 999999999999999977777777664333
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.58 E-value=2.8e-14 Score=133.68 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCC----CCCCeEEEEEecChhH--HHHHHHHHhcccCCCcEEEEeCchHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSF----DRPNLKYEVIGKSKEA--LKQIGQLIKDRFKDQCGIIYCLSKNEC 74 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~----~r~~i~~~v~~~~~~~--~~~l~~~l~~~~~~~~~iIF~~~~~~~ 74 (242)
|++|||+|+...+.+.+.++....+....+. +.+.+.........+. .............+.+++|-|||++.|
T Consensus 374 ll~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 374 LLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred EEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 5899999999999999998877666555442 2223322211111111 011122222333678999999999999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHH----hCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHh
Q 026168 75 VEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW----HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQES 150 (242)
Q Consensus 75 ~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f----~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~ 150 (242)
.++++.|+.. +..+..+||.+...+|.+.++.+ +.+...|+|||++.+.|+|+. .+++| .-+..+.+.+||+
T Consensus 454 ie~Y~~Lk~~-~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--Te~aPidSLIQR~ 529 (733)
T COG1203 454 IELYEKLKEK-GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--TELAPIDSLIQRA 529 (733)
T ss_pred HHHHHHHHhc-CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee--ecCCCHHHHHHHH
Confidence 9999999985 44799999999999998888754 457889999999999999974 55554 4577899999999
Q ss_pred hccCCCC--CCceEEEEeecCc
Q 026168 151 GRAGRDN--LPSVCIVLYQKKD 170 (242)
Q Consensus 151 GR~gR~g--~~g~~i~l~~~~~ 170 (242)
||++|.| ..|..+++.....
T Consensus 530 GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHhhcccccCCceeEeecccC
Confidence 9999999 5677777665433
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.58 E-value=2.2e-14 Score=133.71 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=132.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChh-HHHHHHHHHhccc--CCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKE-ALKQIGQLIKDRF--KDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~-~~~~l~~~l~~~~--~~~~~iIF~~~~~~~~~l 77 (242)
|.||||+..+ .+..+++....+.+.....+-.+.|.-...... -...+...+..+. ..+.+|||.+-..+.+.+
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 5799999876 778888876667777777777777743332223 3344444443322 467899999999999999
Q ss_pred HHHHhh-hC--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC--------------
Q 026168 78 SNFLNQ-KC--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS-------------- 140 (242)
Q Consensus 78 ~~~L~~-~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p-------------- 140 (242)
++.|.+ .+ ...+..+||.|+.+++.++++--..|+-+|++||++++.+|-+|+|++||+-|.-
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999987 44 3778999999999999998877777766799999999999999999999987753
Q ss_pred ----CCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 141 ----KSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 141 ----~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
-|-++..||.|||||- .+|.|+-+|+..+..
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 356 ETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred eEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 2567899999999999 599999999875544
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.52 E-value=1.5e-13 Score=122.49 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=129.4
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcc--cCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR--FKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~--~~~~~~iIF~~~~~~~~~l~ 78 (242)
|.+|||+..+ .+..++..-....+.....+-.+.|.-.+..+..-+.+...++-+ .+.+=+|||....++++.++
T Consensus 199 IimSATlda~---kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 199 IIMSATLDAE---KFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred EEEeeeecHH---HHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 5799999855 677888775556666666666666654433332223333333222 35556899999999999999
Q ss_pred HHHhhhCC-------CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC------------
Q 026168 79 NFLNQKCK-------IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL------------ 139 (242)
Q Consensus 79 ~~L~~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~------------ 139 (242)
+.|.+..+ .-+..+||.|+.+++.++++.--.|.-+|+++|++++..+-+|+|.+||+-|.
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 99986321 12468999999999999998888899999999999999999999999997663
Q ss_pred ------CCCHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 140 ------SKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 140 ------p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
|-|.++-.||.|||||.| +|.|+-+|+.+++..
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 347788899999999995 999999999887754
No 105
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=9.7e-13 Score=116.83 Aligned_cols=94 Identities=17% Similarity=0.303 Sum_probs=89.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~ 139 (242)
...+++||+.+.+.+..++..+... +. +..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|+++.+|....
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~-~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~ 359 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAP-GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP 359 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCC-Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC
Confidence 3568999999999999999999874 44 889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccCC
Q 026168 140 SKSIESYYQESGRAGR 155 (242)
Q Consensus 140 p~~~~~y~Qr~GR~gR 155 (242)
..|...|+||+||.-|
T Consensus 360 t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 360 TGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCcHHHHHHHhhhhcc
Confidence 9999999999999999
No 106
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=7.1e-13 Score=116.40 Aligned_cols=112 Identities=26% Similarity=0.358 Sum_probs=97.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh-------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCcc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK-------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR 132 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~ 132 (242)
.+-++|-||.+++.|+.+....+.- +-..+..|.||.+..+|.++..+.--|++.-+|+|++++.|||+.+.+
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 5678999999999999877655431 112356789999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 133 FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 133 ~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
.|++.++|.+++.+.|+.|||||.++++.++.+......
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEeccch
Confidence 999999999999999999999999999988877665433
No 107
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=7.6e-13 Score=121.74 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=100.0
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhh--------------------------------------CCCcEEE
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQK--------------------------------------CKIKTVY 91 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~--------------------------------------~~~~~~~ 91 (242)
.++..+... +.-++||||-+++.|++-+++|... +.-.++.
T Consensus 557 ~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaV 635 (1248)
T KOG0947|consen 557 DLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAV 635 (1248)
T ss_pred HHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchh
Confidence 344444332 4558999999999999999998741 0123688
Q ss_pred EcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC---------CHHHHHHHhhccCCCCC--Cc
Q 026168 92 YHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK---------SIESYYQESGRAGRDNL--PS 160 (242)
Q Consensus 92 ~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~---------~~~~y~Qr~GR~gR~g~--~g 160 (242)
+|||+-+--++-++..|..|-++||+||..++||+|.|.-.+|+ -.+.+ .+-+|.||+|||||.|- .|
T Consensus 636 HH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tG 714 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETG 714 (1248)
T ss_pred hcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCc
Confidence 99999999999999999999999999999999999999655554 33332 67899999999999994 57
Q ss_pred eEEEEeecC--cHHHHHHHHHcCCC
Q 026168 161 VCIVLYQKK--DFSRVVCMLRNGQG 183 (242)
Q Consensus 161 ~~i~l~~~~--~~~~~~~~~~~~~~ 183 (242)
+++++.... +...++.++-.+..
T Consensus 715 TVii~~~~~vp~~a~l~~li~G~~~ 739 (1248)
T KOG0947|consen 715 TVIIMCKDSVPSAATLKRLIMGGPT 739 (1248)
T ss_pred eEEEEecCCCCCHHHHhhHhcCCCc
Confidence 777766543 45566666655443
No 108
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=7.1e-12 Score=115.94 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=120.5
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+- ..+.+..++ -++..|+.+|.++. .++.....|+..+.+.+... ..++|+||.|.|.+..+.
T Consensus 366 GMTGTA~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ 441 (925)
T PRK12903 366 GMTGTAKTEE-QEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSET 441 (925)
T ss_pred ccCCCCHHHH-HHHHHHhCC---CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 4788986553 334444433 34445556665543 34556778888888777643 468899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-CccEEEEeccccccccccCcc--------EEEEeCCCCCHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQIVCATIAFGMGIDKPDVR--------FVIHNTLSKSIESYY 147 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gid~p~v~--------~Vi~~~~p~~~~~y~ 147 (242)
++..|.+. |++...+++... +++.-+-. ..| .-.|.|||+.+|||.|+.--. +||....|.|..---
T Consensus 442 ls~~L~~~-gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDn 517 (925)
T PRK12903 442 LHELLLEA-NIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDN 517 (925)
T ss_pred HHHHHHHC-CCCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHH
Confidence 99999985 899999998743 34333332 345 467999999999999996322 899999999988888
Q ss_pred HHhhccCCCCCCceEEEEeecCc
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~ 170 (242)
|..||+||.|.+|.+..|++-.|
T Consensus 518 QLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 518 QLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHhcccccCCCCCcceEEEecch
Confidence 99999999999999998887654
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.44 E-value=1.1e-12 Score=125.08 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC---CccEEEEecc
Q 026168 46 EALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG---DVQIVCATIA 121 (242)
Q Consensus 46 ~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlvaT~~ 121 (242)
.|+..|..++... ..+.++|||+........|.++|... ++....+||+++..+|..+++.|++. ..-+|++|.+
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~-g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR-GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc-CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 4555555555432 25679999999999999999999874 89999999999999999999999853 3467899999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE--EeecCc
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV--LYQKKD 170 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~--l~~~~~ 170 (242)
+|.|||+...++||+||.|+++....|++||+-|-|+...+.+ |+...-
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999999999999999999998765543 444443
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.3e-11 Score=112.63 Aligned_cols=162 Identities=21% Similarity=0.197 Sum_probs=122.7
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+ .+.+.+..+++ ++.-|+.+|.++ ..++....+|+..+.+.+.. +..++|+||.+.|.+..+.
T Consensus 367 GMTGTa~t~-~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ 442 (764)
T PRK12326 367 GMTGTAVAA-GEQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEE 442 (764)
T ss_pred eecCCChhH-HHHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 589998655 45566666655 333445555544 34566677888888776653 3478899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-CccEEEEecccccccccc----------Ccc-----EEEEeCCC
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQIVCATIAFGMGIDKP----------DVR-----FVIHNTLS 140 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gid~p----------~v~-----~Vi~~~~p 140 (242)
++..|.+. +++...+++.-...| ..++.+ .| .-.|.|||+.+|||.|+. .|. +||-...|
T Consensus 443 ls~~L~~~-gI~h~vLNAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerh 518 (764)
T PRK12326 443 LAERLRAA-GVPAVVLNAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRH 518 (764)
T ss_pred HHHHHHhC-CCcceeeccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCC
Confidence 99999985 899999998744333 223322 24 357999999999999986 222 89999999
Q ss_pred CCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 141 KSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 141 ~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
.|..---|-.||+||.|.+|.+..|++-.|-
T Consensus 519 eSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 519 RSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred chHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9999999999999999999999999886553
No 111
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=3.8e-11 Score=112.72 Aligned_cols=163 Identities=20% Similarity=0.140 Sum_probs=120.3
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+....+++ ++.-|+++|.++ -.++....+|+..+.+.+.. +..++|+||-+.|.+..+.
T Consensus 568 GMTGTA~tea-~Ef~~IY~L~---Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~ 643 (1112)
T PRK12901 568 GMTGTAETEA-GEFWDIYKLD---VVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISEL 643 (1112)
T ss_pred ccCCCCHHHH-HHHHHHhCCC---EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence 4789986654 3455555554 333444454443 34555677888888776654 3478899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---Cc-----cEEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---DV-----RFVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---~v-----~~Vi~~~~p~~~~~y~Q 148 (242)
+++.|... |+++..+++.... ++.-+-.-.-..-.|.|||+.+|||.|+. .| -+||-...+.|..---|
T Consensus 644 lS~~L~~~-gI~H~VLNAK~h~--~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~Q 720 (1112)
T PRK12901 644 LSRMLKMR-KIPHNVLNAKLHQ--KEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQ 720 (1112)
T ss_pred HHHHHHHc-CCcHHHhhccchh--hHHHHHHhcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHH
Confidence 99999985 8888788877543 33222222222457999999999999996 22 38999999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCcH
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
-.||+||.|.+|.+..|++-.|-
T Consensus 721 LrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 721 LRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred HhcccccCCCCCcceEEEEcccH
Confidence 99999999999999999886553
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.35 E-value=1.3e-11 Score=119.60 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC-----C---CcEEEEcCCCCHHHHHHHHHHHhCCCc-cEEEEeccccccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC-----K---IKTVYYHAGLAARQRVVVQKKWHTGDV-QIVCATIAFGMGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~-----~---~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gid~p~v 131 (242)
++++||||.+++.|+.+++.|.+.+ + ..+..+||+.+ ++..++++|+++.. +|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 4799999999999999998887532 1 24567888875 46789999999886 699999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 132 RFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 132 ~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
..||.+..+.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999963
No 113
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=5e-11 Score=111.23 Aligned_cols=162 Identities=20% Similarity=0.177 Sum_probs=119.4
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCC----CeEEEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRP----NLKYEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~----~i~~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+....+++ ++.-|+.+| +..-.++....+|+..+.+.+... ..++|+||-+.|.+..+.
T Consensus 389 GMTGTa~te~-~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 389 GMTGTADTEA-FEFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred cCCCCCHHHH-HHHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 4788986554 3455555443 233344444 333446666788998888777643 368899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-CccEEEEecccccccccc--------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQIVCATIAFGMGIDKP-------------------------- 129 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlvaT~~~~~Gid~p-------------------------- 129 (242)
++..|.+. +++...+++.... ++.-+-. ..| .-.|.|||+.+|||.|+.
T Consensus 465 ls~~L~~~-gi~h~VLNAk~~~--~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 465 MSNLLKKE-GIEHKVLNAKYHE--KEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHc-CCcHHHhccccch--hHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 99999985 8887777776443 3322222 334 457999999999999994
Q ss_pred ------Ccc-----EEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 130 ------DVR-----FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 130 ------~v~-----~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
.|. +||-...+.|..-=-|-.||+||.|.+|.+..|++-.|-
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 232 899999999999999999999999999999999987553
No 114
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=5.9e-12 Score=112.57 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=124.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhccc--CCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRF--KDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~--~~~~~iIF~~~~~~~~~l~ 78 (242)
|..|||+... .+..+++.-....+.....+-++.|.-.+.+...-..+-+.+.-+. ..+-.|||..-.+.++...
T Consensus 504 iVtSATm~a~---kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 504 IVTSATMDAQ---KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred EEeeccccHH---HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 4689999754 7788888655566666666666666544433333333444444332 3356899999888777666
Q ss_pred HHHhhh---------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC----------
Q 026168 79 NFLNQK---------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL---------- 139 (242)
Q Consensus 79 ~~L~~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~---------- 139 (242)
..+... .++.+..+++.|+++-+.++++.--.|.-+++|||++++..+.+|+|.+||+.|.
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 655542 1467899999999999999999888899999999999999999999999998764
Q ss_pred --------CCCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 140 --------SKSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 140 --------p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
|-+-..--||.|||||.| +|.|+-+|+..
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 335667789999999995 99999999873
No 115
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=1.8e-11 Score=109.22 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=119.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHH-HHHHHHhccc--CCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALK-QIGQLIKDRF--KDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~-~l~~~l~~~~--~~~~~iIF~~~~~~~~~l 77 (242)
|..|||+..+ .+..++..-....+...-.+-++.|.--+ +.+-++ .+..+++-+. +.+-+|||..-.++.+.+
T Consensus 414 lIsSAT~DAe---kFS~fFDdapIF~iPGRRyPVdi~Yt~~P-EAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 414 LISSATMDAE---KFSAFFDDAPIFRIPGRRYPVDIFYTKAP-EADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred EeeccccCHH---HHHHhccCCcEEeccCcccceeeecccCC-chhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 4679999765 66777765444444444444555444333 333333 3334444332 445689999988888877
Q ss_pred HHHHhhh---CC-----CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC---------
Q 026168 78 SNFLNQK---CK-----IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS--------- 140 (242)
Q Consensus 78 ~~~L~~~---~~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p--------- 140 (242)
.+.|.+. +| +.+..+|+.|+.+.+.++++---.|--+|++||++++..+.+++|.+||+-|..
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 7777642 23 457889999999999999988888999999999999999999999999976643
Q ss_pred ---------CCHHHHHHHhhccCCCCCCceEEEEeec
Q 026168 141 ---------KSIESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 141 ---------~~~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
-|-++-.||.|||||.| +|.|+-+|+.
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 35677899999999996 9999999984
No 116
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2e-10 Score=107.56 Aligned_cols=162 Identities=21% Similarity=0.171 Sum_probs=119.1
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+ .+.+.+..++ .++..|+.+|.++ ..++.....|+..+...+.. +..++|+||-+.|....+.
T Consensus 508 GmTGTa~~e-~~Ef~~iY~l---~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ 583 (970)
T PRK12899 508 GMTGTAITE-SREFKEIYNL---YVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEK 583 (970)
T ss_pred ccCCCCHHH-HHHHHHHhCC---CEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 478898554 3445555554 2334445555443 33455567888887765543 3467899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC-ccEEEEecccccccccc---Ccc-----EEEEeCCCCCHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCATIAFGMGIDKP---DVR-----FVIHNTLSKSIESYY 147 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlvaT~~~~~Gid~p---~v~-----~Vi~~~~p~~~~~y~ 147 (242)
++..|.+. +++...+++.-. +++.-+-. ..|+ -.|.|||+.+|||.|+. .|. +||....|.|...--
T Consensus 584 ls~~L~~~-gi~h~vLNak~~--~~Ea~iia-~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~ 659 (970)
T PRK12899 584 LSRILRQN-RIEHTVLNAKNH--AQEAEIIA-GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDR 659 (970)
T ss_pred HHHHHHHc-CCcceecccchh--hhHHHHHH-hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHH
Confidence 99999985 888888888743 33322222 2343 57999999999999985 222 899999999999999
Q ss_pred HHhhccCCCCCCceEEEEeecCcH
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|-.||+||.|.+|.+..|++-.|-
T Consensus 660 Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 660 QLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HHhcccccCCCCCceeEEEEcchH
Confidence 999999999999999999986553
No 117
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.31 E-value=9.1e-11 Score=102.98 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=100.2
Q ss_pred HHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC--CCccEEEEeccccccccc
Q 026168 51 IGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT--GDVQIVCATIAFGMGIDK 128 (242)
Q Consensus 51 l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gid~ 128 (242)
++.-++...++. +|| |-|+++...+...+.+..+.+++.++|+++++.|.+--..|++ ++++||||||+.|||+|+
T Consensus 348 ~~~sl~nlk~GD-CvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 348 ALGSLSNLKPGD-CVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred hhhhhccCCCCC-eEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 344444332344 444 3368889999999988767779999999999999999999996 899999999999999998
Q ss_pred cCccEEEEeCCC---------CCHHHHHHHhhccCCCCC---CceEEEEeecCcHHHHHHHHHcC
Q 026168 129 PDVRFVIHNTLS---------KSIESYYQESGRAGRDNL---PSVCIVLYQKKDFSRVVCMLRNG 181 (242)
Q Consensus 129 p~v~~Vi~~~~p---------~~~~~y~Qr~GR~gR~g~---~g~~i~l~~~~~~~~~~~~~~~~ 181 (242)
+|+.||.+++- -+.++..|-+|||||.|. .|.+..+ ..+++..+.++++..
T Consensus 426 -~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 426 -NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRILKRP 488 (700)
T ss_pred -ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHHhCC
Confidence 69999988865 367899999999999863 3555544 566788888888754
No 118
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.29 E-value=8.1e-11 Score=111.26 Aligned_cols=107 Identities=33% Similarity=0.491 Sum_probs=85.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---------------------------hCCC-------------cEEEEcCCCCHHH
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---------------------------KCKI-------------KTVYYHAGLAARQ 100 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---------------------------~~~~-------------~~~~~h~~~~~~~ 100 (242)
.-++|+|+-+++.|+..+..+.. ..+. .++++|+||=+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 34789999999999988866652 0011 2468999999999
Q ss_pred HHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC---------CCHHHHHHHhhccCCCCC--CceEEEEeec
Q 026168 101 RVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS---------KSIESYYQESGRAGRDNL--PSVCIVLYQK 168 (242)
Q Consensus 101 r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p---------~~~~~y~Qr~GR~gR~g~--~g~~i~l~~~ 168 (242)
|..+...|..|-++|++||.+++.|+|.|. +.|+.+.+- -+..+|+|+.|||||.|. .|.+++.-.+
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 999999999999999999999999999994 445544432 378999999999999995 4777777433
No 119
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.23 E-value=6e-11 Score=110.99 Aligned_cols=125 Identities=24% Similarity=0.374 Sum_probs=102.8
Q ss_pred HHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhC------CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 48 LKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKC------KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 48 ~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
+..|+..+.+....+.+|||.+...+...+.+.|.... ++-+..+|+.|+..++..+....-.|.-+|++||++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 34444555444457789999999999999999996421 355789999999999999999999999999999999
Q ss_pred ccccccccCccEEEEeCCCC------------------CHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 122 FGMGIDKPDVRFVIHNTLSK------------------SIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~------------------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
++..|-+++|-+||+.+.-+ +...-.||.|||||. .+|.|+-+|+...+..
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 99999999999999765432 345668999999999 7999999998876553
No 120
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.18 E-value=2.3e-09 Score=99.93 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=83.8
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHh-cccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIK-DRFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~-~~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+ .+.+.+..+++ ++.-|+.+|.++ ..++....+|+..+.+.+. .+..++|+||-+.|.+..+.
T Consensus 364 GMTGTa~te-~~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ 439 (870)
T CHL00122 364 GMTGTAKTE-ELEFEKIYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSEL 439 (870)
T ss_pred ccCCCCHHH-HHHHHHHhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHH
Confidence 578998654 44555555443 333455555444 3455566778887776554 33478899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHH-HHHHHHhCCCccEEEEecccccccccc
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRV-VVQKKWHTGDVQIVCATIAFGMGIDKP 129 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~-~~~~~f~~g~~~vlvaT~~~~~Gid~p 129 (242)
++..|.+. ++++..+++.-...+++ +++.. .--.-.|.|||+.+|||.|+.
T Consensus 440 ls~~L~~~-gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 440 LSQLLKEY-RLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHc-CCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCee
Confidence 99999986 99999999864222333 33333 223457999999999999974
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.08 E-value=2.6e-09 Score=102.30 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=107.7
Q ss_pred CEEeecCChH-HHHHHHHHcCCCCceE--E-ecCCC-CCCeEEEEEe--------cChhHHHHHHHHHhc--ccCCCcEE
Q 026168 1 MALTATATQS-VRLDILKALRIPHALV--L-ETSFD-RPNLKYEVIG--------KSKEALKQIGQLIKD--RFKDQCGI 65 (242)
Q Consensus 1 i~~SAT~~~~-~~~~~~~~l~~~~~~~--i-~~~~~-r~~i~~~v~~--------~~~~~~~~l~~~l~~--~~~~~~~i 65 (242)
|++|||++.. ..+.+.+.+|.+.... + ..+++ ..+....+.. +..+-.+.+...+.. ...++++|
T Consensus 599 il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~L 678 (850)
T TIGR01407 599 IFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKIL 678 (850)
T ss_pred EEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEE
Confidence 5899999843 3467778888865432 2 23343 2333322211 111122233333321 12467899
Q ss_pred EEeCchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCcc--EEEEeCCCCC
Q 026168 66 IYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR--FVIHNTLSKS 142 (242)
Q Consensus 66 IF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~--~Vi~~~~p~~ 142 (242)
||++|.+..+.++..|.... ......+..+.. ..|.++++.|++|+..||++|+.+.+|||+|+.. .||..++|..
T Consensus 679 VlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 679 VLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred EEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCC
Confidence 99999999999999997521 111223333333 4788999999999999999999999999999866 5777777742
Q ss_pred ------------------------------HHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 143 ------------------------------IESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 143 ------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
+..+.|.+||.=|..+..-+++++++.
T Consensus 758 ~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 758 NPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 134578889999987554455565544
No 122
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=1e-08 Score=95.71 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=83.7
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+-.+. ..+.+..++ .++.-|+.+|.++ ..++.....|+..+.+.+.. +..++|+||-+.|.+..+.
T Consensus 379 GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ 454 (939)
T PRK12902 379 GMTGTAKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSEL 454 (939)
T ss_pred ccCCCCHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHH
Confidence 4788875543 334454444 3444455555544 34555667888888876654 3478899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHH-HHHHHHhCC-CccEEEEecccccccccc
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRV-VVQKKWHTG-DVQIVCATIAFGMGIDKP 129 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~-~~~~~f~~g-~~~vlvaT~~~~~Gid~p 129 (242)
++..|.+. |+++..+++.-...+++ +++.. .| .-.|.|||+.+|||.|+.
T Consensus 455 ls~~L~~~-gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 455 LSALLQEQ-GIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHc-CCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999986 88888899863222333 33333 34 457999999999999974
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.02 E-value=8.4e-10 Score=102.35 Aligned_cols=76 Identities=29% Similarity=0.445 Sum_probs=64.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC--CCCHHHHHHHhhccCCCCCC--ceEEE
Q 026168 89 TVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL--SKSIESYYQESGRAGRDNLP--SVCIV 164 (242)
Q Consensus 89 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~--p~~~~~y~Qr~GR~gR~g~~--g~~i~ 164 (242)
++++|++|+..+|..++-.|+.|...||+||..++.|||.| ++.|+..+- --++-.|.|++|||||.|-. |.++.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 68899999999999999999999999999999999999999 555554443 34788999999999999954 55544
Q ss_pred E
Q 026168 165 L 165 (242)
Q Consensus 165 l 165 (242)
+
T Consensus 1044 m 1044 (1330)
T KOG0949|consen 1044 M 1044 (1330)
T ss_pred E
Confidence 4
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.6e-08 Score=93.72 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhC-CCcEEEEcCCCCHH--HHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC---------
Q 026168 74 CVEVSNFLNQKC-KIKTVYYHAGLAAR--QRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK--------- 141 (242)
Q Consensus 74 ~~~l~~~L~~~~-~~~~~~~h~~~~~~--~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~--------- 141 (242)
++++++.|++.+ +.++..+.++.... .-+..+..|.+|+.+|||.|.++..|.|+|++.+|...+...
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 555556665543 56677777775443 345789999999999999999999999999999887665442
Q ss_pred ---CHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 142 ---SIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 142 ---~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
...-+.|-.||+||.+.+|.+++-....+-..+..+...
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 356788999999999999999988877776666555554
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.4e-09 Score=99.22 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=65.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC------------------CHHHHHHHh
Q 026168 89 TVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK------------------SIESYYQES 150 (242)
Q Consensus 89 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~------------------~~~~y~Qr~ 150 (242)
+..+++-++.+++.++++.--.|.--++|||++++..+.+|+|++||+.|.-+ |-.+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 34566667777777777777778888999999999999999999999766432 334557999
Q ss_pred hccCCCCCCceEEEEeecCcH
Q 026168 151 GRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 151 GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|||||-| +|+|+-||+..-+
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf 706 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVF 706 (1172)
T ss_pred cccCCCC-CCceeehhhhHHh
Confidence 9999996 8999999986443
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.85 E-value=4.9e-08 Score=90.32 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCc---cEEEEec
Q 026168 45 KEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDV---QIVCATI 120 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlvaT~ 120 (242)
..++..|..++.... ...--.|++........+.+.+.+..|..+..+||.|+..+|..+++.|++... =.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 345666666652211 112235666666777777766665559999999999999999999999996433 3667888
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE--EeecCc
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV--LYQKKD 170 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~--l~~~~~ 170 (242)
+.|.||++-+.+.||.+|++++++.-.|.++|+-|+|++-.|++ |+...-
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999999999999999999999999999998766655 454433
No 127
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.84 E-value=1.7e-07 Score=87.83 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=103.8
Q ss_pred CEEeecCChH-HHHHHHHHcCCCC---ce--EEecCCCCCCeEEEEEe-------cChhHHHHHHHHHhcc-cCCCcEEE
Q 026168 1 MALTATATQS-VRLDILKALRIPH---AL--VLETSFDRPNLKYEVIG-------KSKEALKQIGQLIKDR-FKDQCGII 66 (242)
Q Consensus 1 i~~SAT~~~~-~~~~~~~~l~~~~---~~--~i~~~~~r~~i~~~v~~-------~~~~~~~~l~~~l~~~-~~~~~~iI 66 (242)
|++|||+++. ..+.+.+.+|.+. .. .+..+++-.+....+++ ...+-.+.+.+.+... ...+.++|
T Consensus 460 IltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg~LV 539 (697)
T PRK11747 460 VLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKGSLV 539 (697)
T ss_pred EEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5899999863 4456777888763 22 23345544333333332 1112223333333211 13445899
Q ss_pred EeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh----CCCccEEEEeccccccccccC--ccEEEEeCCC
Q 026168 67 YCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH----TGDVQIVCATIAFGMGIDKPD--VRFVIHNTLS 140 (242)
Q Consensus 67 F~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlvaT~~~~~Gid~p~--v~~Vi~~~~p 140 (242)
|++|.+..+.++..|....+.. ...+|.. .+.+.++.|+ .|+-.||++|..+..|||+|+ .+.||...+|
T Consensus 540 lFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 540 LFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred EeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCC
Confidence 9999999999999997543433 3445542 4566776666 467789999999999999996 6789988877
Q ss_pred CC------------------------------HHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 141 KS------------------------------IESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 141 ~~------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
.. +..+.|.+||.=|....--.++++++.
T Consensus 616 F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 616 FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 52 123467889998886543345555544
No 128
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.82 E-value=1.4e-07 Score=91.11 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=108.4
Q ss_pred CEEeecCChH-HHHHHHHHcCCCCc----eEEecCCCCCCeEEEEEec---------ChhHHHHHHHHHhcc--cCCCcE
Q 026168 1 MALTATATQS-VRLDILKALRIPHA----LVLETSFDRPNLKYEVIGK---------SKEALKQIGQLIKDR--FKDQCG 64 (242)
Q Consensus 1 i~~SAT~~~~-~~~~~~~~l~~~~~----~~i~~~~~r~~i~~~v~~~---------~~~~~~~l~~~l~~~--~~~~~~ 64 (242)
|++|||++.. --+.+...+|.+.. ..+..+++-.+....+++. ...-.+.+.+.+... ..++++
T Consensus 676 iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g~~ 755 (928)
T PRK08074 676 ILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKGRM 755 (928)
T ss_pred EEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCE
Confidence 5899999854 23456677887642 3333455543332222221 112223343333221 146789
Q ss_pred EEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC--ccEEEEeCCCC
Q 026168 65 IIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD--VRFVIHNTLSK 141 (242)
Q Consensus 65 iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~--v~~Vi~~~~p~ 141 (242)
+||++|.+..+.+++.|...... ....+.-+++...|.++++.|++++-.||++|..+.+|||+|+ .+.||...+|.
T Consensus 756 LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 756 LVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred EEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCC
Confidence 99999999999999999753221 1222222343446788999999988889999999999999997 47888888775
Q ss_pred C------------------------------HHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 142 S------------------------------IESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 142 ~------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
. +..+.|-+||.=|..+.--+++++++.
T Consensus 836 ~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 836 APPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 2 223478889999986554455555554
No 129
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.77 E-value=8.1e-08 Score=90.07 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=94.6
Q ss_pred CEEeecCChHH--HHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCc---hHHHH
Q 026168 1 MALTATATQSV--RLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLS---KNECV 75 (242)
Q Consensus 1 i~~SAT~~~~~--~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~---~~~~~ 75 (242)
|..|||..+.- ...+..+|++...- ......||....... +..+.+.++++.- +.=+|||++. ++.++
T Consensus 280 vvsSATg~~rg~R~~LfReLlgFevG~---~~~~LRNIvD~y~~~--~~~e~~~elvk~l--G~GgLIfV~~d~G~e~ae 352 (1187)
T COG1110 280 VVSSATGKPRGSRLKLFRELLGFEVGS---GGEGLRNIVDIYVES--ESLEKVVELVKKL--GDGGLIFVPIDYGREKAE 352 (1187)
T ss_pred EEeeccCCCCCchHHHHHHHhCCccCc---cchhhhheeeeeccC--ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHH
Confidence 45789976652 34556677665332 233445555444432 4555566666543 3348999999 89999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe----ccccccccccC-ccEEEEeCCCC
Q 026168 76 EVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT----IAFGMGIDKPD-VRFVIHNTLSK 141 (242)
Q Consensus 76 ~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT----~~~~~Gid~p~-v~~Vi~~~~p~ 141 (242)
+++++|+.. |+++..+|+. +.+.++.|..|++++||.. .++-||+|+|+ ++++|.||+|+
T Consensus 353 el~e~Lr~~-Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 353 ELAEYLRSH-GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HHHHHHHhc-CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 999999985 9999999995 3678999999999999887 46899999996 88999999994
No 130
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.75 E-value=1.1e-07 Score=82.82 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=107.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHHHHHHH-HHhcc--cCCCcEEEEeCchHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQ-LIKDR--FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~~~l~~-~l~~~--~~~~~~iIF~~~~~~~~~ 76 (242)
|.+|||+... .+..+++....+.+.. ..+-.+ .+.+ .+.+.++..++ ++.-+ ...+-++||....++.+.
T Consensus 195 vvmSatl~a~---Kfq~yf~n~Pll~vpg-~~PvEi--~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~ 268 (699)
T KOG0925|consen 195 VVMSATLDAE---KFQRYFGNAPLLAVPG-THPVEI--FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIED 268 (699)
T ss_pred EEeecccchH---HHHHHhCCCCeeecCC-CCceEE--EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHH
Confidence 4689998654 6778877765555544 333333 2222 34444444333 22211 135668999999998888
Q ss_pred HHHHHhhh--------CCCcEEEEcCCCCHHHHHHHHHHHh---CC--CccEEEEeccccccccccCccEEEEeCC----
Q 026168 77 VSNFLNQK--------CKIKTVYYHAGLAARQRVVVQKKWH---TG--DVQIVCATIAFGMGIDKPDVRFVIHNTL---- 139 (242)
Q Consensus 77 l~~~L~~~--------~~~~~~~~h~~~~~~~r~~~~~~f~---~g--~~~vlvaT~~~~~Gid~p~v~~Vi~~~~---- 139 (242)
..+.+..+ ...++..+| ++++..+++-.- +| .-+|+|+|.+++..+.+++|.+||+-|+
T Consensus 269 aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqk 344 (699)
T KOG0925|consen 269 ACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQK 344 (699)
T ss_pred HHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhc
Confidence 88777642 235678888 334444333221 22 3479999999999999999999998664
Q ss_pred --------------CCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 140 --------------SKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 140 --------------p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|-|..+-.||.||+||. ++|.|+-+|+.+-+
T Consensus 345 VYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 345 VYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred ccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh
Confidence 44677889999999998 79999999986443
No 131
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.67 E-value=1e-06 Score=82.47 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=103.8
Q ss_pred CEEeecCChH-HHHHHHHHcCCCCce-EEe--cCCCCCCeEEEEEe----cCh--hHHHHHH----HHHhcccCCCcEEE
Q 026168 1 MALTATATQS-VRLDILKALRIPHAL-VLE--TSFDRPNLKYEVIG----KSK--EALKQIG----QLIKDRFKDQCGII 66 (242)
Q Consensus 1 i~~SAT~~~~-~~~~~~~~l~~~~~~-~i~--~~~~r~~i~~~v~~----~~~--~~~~~l~----~~l~~~~~~~~~iI 66 (242)
|++|||+++. ....+....+..... .+. .+++....-...++ ... .-...+. .++.. .++.++|
T Consensus 407 vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~lv 484 (654)
T COG1199 407 VLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKA--SPGGVLV 484 (654)
T ss_pred EEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhh--cCCCEEE
Confidence 5899999877 445566666655444 222 23333332222222 111 2333333 33332 4558999
Q ss_pred EeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCc-cEEEEeccccccccccC--ccEEEEeCCCCC-
Q 026168 67 YCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDV-QIVCATIAFGMGIDKPD--VRFVIHNTLSKS- 142 (242)
Q Consensus 67 F~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~-~vlvaT~~~~~Gid~p~--v~~Vi~~~~p~~- 142 (242)
|++|.+..+.+++.+...........+|..+ +...++.|..+.- -++|+|..+.+|+|+|+ .+.||..++|..
T Consensus 485 lF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 485 LFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 9999999999999998642212345555544 4477888886544 89999999999999996 468888888762
Q ss_pred -----------------------------HHHHHHHhhccCCCCCCceEEEEeec
Q 026168 143 -----------------------------IESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 143 -----------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
+....|.+||.=|.-..--.+++++.
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 44668999999997544444444444
No 132
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.66 E-value=9.8e-07 Score=84.10 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=102.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe----c-----ChhHHHHHHHHHhc-ccCCCcEEEEeCc
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG----K-----SKEALKQIGQLIKD-RFKDQCGIIYCLS 70 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~----~-----~~~~~~~l~~~l~~-~~~~~~~iIF~~~ 70 (242)
|++|||++..-.-.+...+|.+.......++...+....+++ . +++-.+.+.+.+.. ...+++++|+++|
T Consensus 577 i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS 656 (820)
T PRK07246 577 YFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNS 656 (820)
T ss_pred EEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 589999973211236778887654433333332222222221 1 12222233333321 1256789999999
Q ss_pred hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC--ccEEEEeCCCCC------
Q 026168 71 KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD--VRFVIHNTLSKS------ 142 (242)
Q Consensus 71 ~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~--v~~Vi~~~~p~~------ 142 (242)
.+..+.+++.|... ...+ ...|.-. .+.+++++|+++.-.||++|..+.+|+|+|+ ...||...+|..
T Consensus 657 ~~~l~~v~~~l~~~-~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~ 732 (820)
T PRK07246 657 KKHLLAVSDLLDQW-QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPF 732 (820)
T ss_pred HHHHHHHHHHHhhc-CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHH
Confidence 99999999999753 4444 4444322 2456899999988899999999999999973 455676776641
Q ss_pred ------------------------HHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 143 ------------------------IESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 143 ------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
+..+.|-+||.=|....--+++++++.
T Consensus 733 ~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 733 VKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred HHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 234578889999986543345555554
No 133
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.63 E-value=3.1e-07 Score=85.54 Aligned_cols=161 Identities=22% Similarity=0.111 Sum_probs=109.5
Q ss_pred EeecCChHHHHHHHHHcCCCCceEEecCCCCCCe----EEEEEecChhHHHHHHHHHhc-ccCCCcEEEEeCchHHHHHH
Q 026168 3 LTATATQSVRLDILKALRIPHALVLETSFDRPNL----KYEVIGKSKEALKQIGQLIKD-RFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 3 ~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i----~~~v~~~~~~~~~~l~~~l~~-~~~~~~~iIF~~~~~~~~~l 77 (242)
||+|+-.+..+ +..+. ...++.-++++|.+ ...++...+.|+..+++.+.. +..++|+||-+.+.+..+.+
T Consensus 370 mTGTa~te~~E-F~~iY---~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~l 445 (822)
T COG0653 370 MTGTADTEEEE-FDVIY---GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELL 445 (822)
T ss_pred CCCcchhhhhh-hhhcc---CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhH
Confidence 55665544332 22222 22333334444444 344555678888888877764 34788999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCcc-----------EEEEeCCCCCHHHH
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR-----------FVIHNTLSKSIESY 146 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~-----------~Vi~~~~p~~~~~y 146 (242)
.+.|.+. +++...+.+.-. +++.-+-...-..-.|-|||+.+|||.|+.--. +||-..--.|-.-=
T Consensus 446 s~~L~~~-~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRID 522 (822)
T COG0653 446 SKLLRKA-GIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRID 522 (822)
T ss_pred HHHHHhc-CCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHH
Confidence 9999975 888888888755 444444444433456889999999999985211 46655555555555
Q ss_pred HHHhhccCCCCCCceEEEEeecCc
Q 026168 147 YQESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 147 ~Qr~GR~gR~g~~g~~i~l~~~~~ 170 (242)
-|-.||+||.|.+|.+..|++-.+
T Consensus 523 nQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 523 NQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhhcccccCCCcchhhhhhhhHH
Confidence 699999999999999988876533
No 134
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.62 E-value=5e-07 Score=69.95 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCC-CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec--cccccccccC--ccEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI--AFGMGIDKPD--VRFV 134 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~--~~~~Gid~p~--v~~V 134 (242)
.++.+|||++|.+..+.+.+.+..... .....+.. +..++...++.|.++.-.||+++. .+..|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 457899999999999999999986320 01122322 245788899999999999999999 9999999996 7789
Q ss_pred EEeCCCCC------------------------------HHHHHHHhhccCCCCCCceEEEEeec
Q 026168 135 IHNTLSKS------------------------------IESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 135 i~~~~p~~------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
|..++|.. +....|.+||+-|..+.--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99999852 12347889999999665444555544
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.61 E-value=3.4e-07 Score=83.86 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCc--cEEEEecc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDV--QIVCATIA 121 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~--~vlvaT~~ 121 (242)
..|++.+..+++.- ..+.++|+|..++....-|..+|...-++....+.|..+...|...+++|.++.. =+|++|.+
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 34666666666532 2466999999999999999999984238999999999999999999999997753 46789999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE--EeecCcHH
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV--LYQKKDFS 172 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~--l~~~~~~~ 172 (242)
.|.|+|+-..+.||.||+.++++.=.|..-||-|.|++-.+++ |++..-++
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 9999999999999999999999999999999999997655443 56665554
No 136
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.59 E-value=3.9e-07 Score=83.23 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=100.1
Q ss_pred HHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC---ccEEEEecccccc
Q 026168 49 KQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD---VQIVCATIAFGMG 125 (242)
Q Consensus 49 ~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlvaT~~~~~G 125 (242)
+.|+.-|++ .+.++|||..-....+-|..+..-. ++....+.|+++.++|...++.|.... .=.|++|-+.|.|
T Consensus 477 DkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R-~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 477 DKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLR-GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred HHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhc-CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 344444443 5789999998888888888877664 899999999999999999999999543 4578999999999
Q ss_pred ccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 126 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 126 id~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
||+-..+.||.||..+++..=+|...||-|-|+...+ +-|++....+
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 9999999999999999999999999999999976554 4456665544
No 137
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.57 E-value=4e-07 Score=86.72 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=100.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC---CCccEEEEeccccccccccCccEEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT---GDVQIVCATIAFGMGIDKPDVRFVIH 136 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vlvaT~~~~~Gid~p~v~~Vi~ 136 (242)
.+.++|||..=....+-|+++|... +++...+.|++..+-|.++++.|.. ...-+|+||-+.|.|||+-..+.||.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 4679999999999999999999885 9999999999999999999999994 45779999999999999999999999
Q ss_pred eCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 137 NTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 137 ~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
||..+++..=+|..-||-|-|++..+ +-|++.+.++
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 99999999999999999999977554 5567766554
No 138
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=4.6e-06 Score=78.66 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=101.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC--CCCCCeEEEEEe---------------cChhHHHHHHHHHhcc--cCC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS--FDRPNLKYEVIG---------------KSKEALKQIGQLIKDR--FKD 61 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~--~~r~~i~~~v~~---------------~~~~~~~~l~~~l~~~--~~~ 61 (242)
|++||||+|. +.+...|+...+.....+ ..+.++...+.. ...+-...+...|... ..+
T Consensus 445 il~SgTL~p~--~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~p 522 (705)
T TIGR00604 445 ILASGTLSPL--DAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKIIP 522 (705)
T ss_pred EEecccCCcH--HHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcCC
Confidence 5899999986 566777887544332221 122333222221 1122233444433221 135
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhCCC-------cEEEEcCCCCHHHHHHHHHHHhC----CCccEEEEe--ccccccccc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKCKI-------KTVYYHAGLAARQRVVVQKKWHT----GDVQIVCAT--IAFGMGIDK 128 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gid~ 128 (242)
+.+|||.+|....+.+++.+.+. +. +..+.-+ -...++..+++.|+. |.-.||+|+ ..+++|||+
T Consensus 523 gg~lvfFpSy~~l~~v~~~~~~~-~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 523 DGIVVFFPSYSYLENIVSTWKEM-GILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CcEEEEccCHHHHHHHHHHHHhc-CHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 67999999999999999887652 11 1222222 222567889999964 456799999 889999999
Q ss_pred cC--ccEEEEeCCCC-CH------------------------------HHHHHHhhccCCCCCCceEEEEeec
Q 026168 129 PD--VRFVIHNTLSK-SI------------------------------ESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 129 p~--v~~Vi~~~~p~-~~------------------------------~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
++ .+.||..++|. ++ ....|.+||+=|..++--++++++.
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 97 67899999997 11 1236888999998655445555544
No 139
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.49 E-value=3.4e-05 Score=67.98 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=129.2
Q ss_pred CEEeecCChHHHHHHHHHcCCCCc-eEEecC--------CCCCCeEEEEEe--------cChhHHHH----HHHHHhccc
Q 026168 1 MALTATATQSVRLDILKALRIPHA-LVLETS--------FDRPNLKYEVIG--------KSKEALKQ----IGQLIKDRF 59 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~-~~i~~~--------~~r~~i~~~v~~--------~~~~~~~~----l~~~l~~~~ 59 (242)
|++|+..+|++...+.+.+..... +.+... ...+.+.|.+.. ..+.+++. ++.-+....
T Consensus 219 ii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~ 298 (442)
T PF06862_consen 219 IIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDS 298 (442)
T ss_pred EEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhcc
Confidence 689999999999988886665433 222211 122344443321 12233333 333333123
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc--cccccccCccEEEEe
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF--GMGIDKPDVRFVIHN 137 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~--~~Gid~p~v~~Vi~~ 137 (242)
..+.+|||++|.-+=-.|..+|+++ +.....+|-..++.+-..+...|..|+.+||+-|.-+ =+-..+.+++.||.|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~-~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKE-NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhc-CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 5678999999999999999999976 8899999999999999999999999999999999753 345567789999999
Q ss_pred CCCCCHHHHHHHhhccCCCC------CCceEEEEeecCcHHHHHHHH
Q 026168 138 TLSKSIESYYQESGRAGRDN------LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 138 ~~p~~~~~y~Qr~GR~gR~g------~~g~~i~l~~~~~~~~~~~~~ 178 (242)
++|..+.-|...++-.+... ....+.++|+.-|...++.++
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 99999988887776555443 368899999998887766655
No 140
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.37 E-value=1.3e-05 Score=74.99 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHH---------------------HHHHHHHHHhC-CCcc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAAR---------------------QRVVVQKKWHT-GDVQ 114 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~---------------------~r~~~~~~f~~-g~~~ 114 (242)
+.+++|||.++..|..+++.|.+.+ +.....+++..+.. ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 4789999999999999998886532 23445555543322 12467888975 6899
Q ss_pred EEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCC
Q 026168 115 IVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 115 vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR 155 (242)
|||+++.+..|.|.|.++.++..-.-.+ -.++|.+||+.|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 9999999999999999998776664444 458999999999
No 141
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.36 E-value=5.2e-06 Score=79.86 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=102.3
Q ss_pred hHHHHHHHHH-hcc-cCCC--cEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEe
Q 026168 46 EALKQIGQLI-KDR-FKDQ--CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCAT 119 (242)
Q Consensus 46 ~~~~~l~~~l-~~~-~~~~--~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT 119 (242)
.+...+.+++ ... ..+. +++||.........+...+... +.....++|+++.+.|...++.|.++ ..-++++|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~-~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL-GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc-CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 5666666666 222 2344 8999999999999999999885 67899999999999999999999985 55677888
Q ss_pred ccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE--EeecCc
Q 026168 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV--LYQKKD 170 (242)
Q Consensus 120 ~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~--l~~~~~ 170 (242)
.+++.|+|+-..++||.+|..+++....|...|+-|-|+...+.+ ++....
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 899999999999999999999999999999999999887655433 444444
No 142
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.33 E-value=7.1e-06 Score=75.41 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC--ccEEEEec
Q 026168 44 SKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD--VQIVCATI 120 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 120 (242)
...|+..|-.+|.... .+.+++||.......+-|...|.. ++++...+.|...-.+|+..++.|...+ .-+|++|.
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~-l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDT-LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHh-cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeec
Confidence 3456777777765432 468999999999988888888987 5999999999999999999999999653 45789999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC--ceEEEEeecCcHHH
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP--SVCIVLYQKKDFSR 173 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~--g~~i~l~~~~~~~~ 173 (242)
+.|-|||+-..++||.+|+..++-+=.|.-.|+-|.|+. =..+-|++..-++.
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 999999999999999999999998889988999998854 45566788777663
No 143
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.32 E-value=3.9e-06 Score=80.22 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHhccc---------------CCCcEEEEeCchHHHHHHHHHHhhhCCCcEE--EEcCCCCHHHHHHHHHH
Q 026168 45 KEALKQIGQLIKDRF---------------KDQCGIIYCLSKNECVEVSNFLNQKCKIKTV--YYHAGLAARQRVVVQKK 107 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~---------------~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~--~~h~~~~~~~r~~~~~~ 107 (242)
..|+.+|-+++.+.. .+.+++|||.-+...+.+.+-|-+..-..+. .+.|+.++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 356777777775311 2458999999999999998877654333444 78999999999999999
Q ss_pred HhCC-CccEE-EEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 108 WHTG-DVQIV-CATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 108 f~~g-~~~vl-vaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
|+++ .++|| .+|.+.|.|+|+-+.+.||.++=.+++-.=+|...||-|-|++-.+ +-+++.+-++
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 9998 77876 6778999999999999999999999988889999999999977554 3445555444
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.19 E-value=0.00016 Score=66.89 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=108.1
Q ss_pred CEEeecCChHH------HHHHHHHcCCCCc-eEEecCCC----CCCeEEEEEe--------cCh----------------
Q 026168 1 MALTATATQSV------RLDILKALRIPHA-LVLETSFD----RPNLKYEVIG--------KSK---------------- 45 (242)
Q Consensus 1 i~~SAT~~~~~------~~~~~~~l~~~~~-~~i~~~~~----r~~i~~~v~~--------~~~---------------- 45 (242)
|+.|||+...- -+.+.+.+|++.. ..+..+++ +..+-..+++ .+.
T Consensus 375 I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~~~ 454 (636)
T TIGR03117 375 IIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAERTW 454 (636)
T ss_pred EEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchhhH
Confidence 57899998743 4788889997644 33346677 4442122222 111
Q ss_pred --hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC----CCccEEEEe
Q 026168 46 --EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT----GDVQIVCAT 119 (242)
Q Consensus 46 --~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT 119 (242)
...+.+..++.. .++.++|.+.|....+.+++.|...+...+ ...|..+ .+...+++|++ |.-.||++|
T Consensus 455 ~~~~~~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 455 LENVSLSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 022344455542 567899999999999999999987555443 4445443 34667888886 578999999
Q ss_pred ccccccccc--------c--CccEEEEeCCCCC-------------------------HHHHHHHhhccCCCCCC--ceE
Q 026168 120 IAFGMGIDK--------P--DVRFVIHNTLSKS-------------------------IESYYQESGRAGRDNLP--SVC 162 (242)
Q Consensus 120 ~~~~~Gid~--------p--~v~~Vi~~~~p~~-------------------------~~~y~Qr~GR~gR~g~~--g~~ 162 (242)
+.+-.|+|+ | .+..||...+|.. .-.+.|-+||.=|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 3 3778988877742 23457888888887654 334
Q ss_pred EEEeecC
Q 026168 163 IVLYQKK 169 (242)
Q Consensus 163 i~l~~~~ 169 (242)
+.++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4455544
No 145
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.19 E-value=1e-05 Score=73.75 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC-ccEEEEeccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQIVCATIAF 122 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~vlvaT~~~ 122 (242)
..|+..|..+|... ..+.++|+|..-.+....+.++|... +++...+.|+....+|.....+|.... .-+|++|-+.
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr-~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR-GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh-ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 34444444444322 25778999999999999999999875 999999999999999999999999654 4568999999
Q ss_pred cccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCce--EEEEeecCcH
Q 026168 123 GMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSV--CIVLYQKKDF 171 (242)
Q Consensus 123 ~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~--~i~l~~~~~~ 171 (242)
|.|||+-..+.||.||..+++..=.|...||-|-|+.-. ++-++.....
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 999999999999999999999999999999999987544 3444444433
No 146
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.16 E-value=1e-05 Score=75.00 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=74.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC---C-CcEEEEcCCCCHHHHHHHHHHHh--CCCccEEEEeccccccccccCccEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC---K-IKTVYYHAGLAARQRVVVQKKWH--TGDVQIVCATIAFGMGIDKPDVRFV 134 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~---~-~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlvaT~~~~~Gid~p~v~~V 134 (242)
.+|+||||.+...|+.+...|.... + --+..+.|.-.+ -..-++.|. +.-.+|.|+.+.+..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 5689999999999999999998642 1 235556665433 233455555 3457899999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhhccCCC
Q 026168 135 IHNTLSKSIESYYQESGRAGRD 156 (242)
Q Consensus 135 i~~~~p~~~~~y~Qr~GR~gR~ 156 (242)
|.+-.-.|..-|.||+||+=|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999884
No 147
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=73.91 Aligned_cols=128 Identities=14% Similarity=0.118 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEec
Q 026168 44 SKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCATI 120 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~ 120 (242)
+-.|++.|.-+|.+. ..+.++|||..-.+..+-|..+|.-+ |+....+.|..+-++|...+++|+.. ....|++|-
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyH-gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYH-GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhc-ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 345666655555432 25779999999999999999999875 88888899999999999999999965 367889999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC--CCceEEEEeecCcHH
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN--LPSVCIVLYQKKDFS 172 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~ 172 (242)
..+.|||+-+.+.||.||..+++..=.|.-.|+-|-| +.=..+-|++...++
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 9999999999999999999998654444333333333 234455566665444
No 148
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.13 E-value=1.8e-05 Score=69.61 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh-CCCccEEEEeccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH-TGDVQIVCATIAF 122 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~~vlvaT~~~ 122 (242)
..|+.....+|+-+ ..+.++|||.++.-...+.+-.|.+ -+++|..++.+|.+|++.|+ +..++-++-+.+.
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC------ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 45666665556522 3678999999986655555544443 35789999999999999999 6688999999999
Q ss_pred cccccccCccEEEEeCCCC-CHHHHHHHhhccCCC
Q 026168 123 GMGIDKPDVRFVIHNTLSK-SIESYYQESGRAGRD 156 (242)
Q Consensus 123 ~~Gid~p~v~~Vi~~~~p~-~~~~y~Qr~GR~gR~ 156 (242)
...+|+|..+++|+...-. +-.+=.||.||.-|+
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 9999999999999887664 567788999988876
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.12 E-value=1.5e-05 Score=70.05 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=92.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC-CCccE-EEEeccccccccccCccEEEEe
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT-GDVQI-VCATIAFGMGIDKPDVRFVIHN 137 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lvaT~~~~~Gid~p~v~~Vi~~ 137 (242)
++.+.+||+--....+.+...+.++ +...+.+.|..+..+|...-+.|+. .+++| +++-.++++|+++...+.||..
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r-~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKR-KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHc-CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 4568999999999999999999986 8999999999999999999999994 45554 3556789999999999999999
Q ss_pred CCCCCHHHHHHHhhccCCCCCCceEEEEe
Q 026168 138 TLSKSIESYYQESGRAGRDNLPSVCIVLY 166 (242)
Q Consensus 138 ~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~ 166 (242)
.+++++.-++|.-.|+-|.|+++.+.+.|
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEE
Confidence 99999999999999999999876554433
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=97.84 E-value=1.1e-05 Score=75.14 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=81.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhh-----------h---CCCcEEEEcCCCCHHHHHHHHHH---HhCCCccEEEEeccccc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQ-----------K---CKIKTVYYHAGLAARQRVVVQKK---WHTGDVQIVCATIAFGM 124 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~-----------~---~~~~~~~~h~~~~~~~r~~~~~~---f~~g~~~vlvaT~~~~~ 124 (242)
+++|-||.++++...+++.+.. . +...+....|.|...+|...+.. |...+++||----.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4689999999988887766543 1 23345566688999998554443 34567889888889999
Q ss_pred cccccCccEEEEeCCCCCHHHHHHHhhccCCC--C-CCceEEEEe
Q 026168 125 GIDKPDVRFVIHNTLSKSIESYYQESGRAGRD--N-LPSVCIVLY 166 (242)
Q Consensus 125 Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~--g-~~g~~i~l~ 166 (242)
|+|+|..+.||.++...++.+.+|.+||.-|- | ..|..|+-+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999995 3 346666543
No 151
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.77 E-value=9.8e-05 Score=69.50 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhh---------------------CCCcEEEEcCCCCHHHHHH
Q 026168 46 EALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQK---------------------CKIKTVYYHAGLAARQRVV 103 (242)
Q Consensus 46 ~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~---------------------~~~~~~~~h~~~~~~~r~~ 103 (242)
.|+-.|+++|+.. .-+.+.|||..+......+..+|... -|.....+.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4555677777532 25789999999999988888888631 0223456788899999999
Q ss_pred HHHHHhCCC----ccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEE
Q 026168 104 VQKKWHTGD----VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL 165 (242)
Q Consensus 104 ~~~~f~~g~----~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l 165 (242)
..+.|++-. --.||+|-+.+.|||+-..+.||.||..++++-=+|.+=|+.|.|+.--++++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999998532 23789999999999999999999999999999999999999999976555543
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.75 E-value=0.001 Score=64.61 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=91.8
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHh-----------------------hhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccE
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLN-----------------------QKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~-----------------------~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 115 (242)
..+.+++||+++++.+..++.-|- +.+...+. |-+++..+...+...|..|.++|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEE
Confidence 367899999999999888774332 11223334 88999999999999999999999
Q ss_pred EEEeccccccccccCccEEEE-----eC------CCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHHcCCC
Q 026168 116 VCATIAFGMGIDKPDVRFVIH-----NT------LSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRNGQG 183 (242)
Q Consensus 116 lvaT~~~~~Gid~p~v~~Vi~-----~~------~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~~~~ 183 (242)
+|...- .+|+-... +.||. || .+.++++..|++|+|.| .|.|+++........+++.+...-.
T Consensus 1435 ~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 998877 88877653 33443 22 45689999999999988 5889999999999999888877543
No 153
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.73 E-value=0.00067 Score=50.93 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=53.8
Q ss_pred EEcCCCCHHHHHHHHHHHhCCC-ccEEEEeccccccccccC--ccEEEEeCCCCC-------------------------
Q 026168 91 YYHAGLAARQRVVVQKKWHTGD-VQIVCATIAFGMGIDKPD--VRFVIHNTLSKS------------------------- 142 (242)
Q Consensus 91 ~~h~~~~~~~r~~~~~~f~~g~-~~vlvaT~~~~~Gid~p~--v~~Vi~~~~p~~------------------------- 142 (242)
.+.-+.+..+...+++.|++.. ..||+++..+.+|+|+|+ .+.||..++|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788999998654 379999988999999997 568888888752
Q ss_pred ------HHHHHHHhhccCCCCCCceEEEEee
Q 026168 143 ------IESYYQESGRAGRDNLPSVCIVLYQ 167 (242)
Q Consensus 143 ------~~~y~Qr~GR~gR~g~~g~~i~l~~ 167 (242)
+....|.+||+=|..+.--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234677788888765433444444
No 154
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.70 E-value=0.00037 Score=63.79 Aligned_cols=119 Identities=10% Similarity=0.062 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhcc--cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh--CCCccEE-EEe
Q 026168 45 KEALKQIGQLIKDR--FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH--TGDVQIV-CAT 119 (242)
Q Consensus 45 ~~~~~~l~~~l~~~--~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vl-vaT 119 (242)
.-|+..++..+... ....+++|-........-+...|++ .|.....+||....++|..+++.|. +|..+|+ ++=
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~-~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK-GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh-CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 34555555544432 2466778877777777778888887 5889999999999999999999998 5656766 555
Q ss_pred ccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE
Q 026168 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV 164 (242)
Q Consensus 120 ~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~ 164 (242)
.+.|.|+|+-+.+++|..|+-+++.-=.|.+.|..|.|++-.+++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 788999999999999999999999999999999999998766554
No 155
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.66 E-value=0.00072 Score=50.84 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCc---cEEEEecc--ccccccccC--ccEEEEeCCCCC-----------------------------
Q 026168 99 RQRVVVQKKWHTGDV---QIVCATIA--FGMGIDKPD--VRFVIHNTLSKS----------------------------- 142 (242)
Q Consensus 99 ~~r~~~~~~f~~g~~---~vlvaT~~--~~~Gid~p~--v~~Vi~~~~p~~----------------------------- 142 (242)
.+...+++.|++..- .||+++.- +++|||+|+ .+.||..++|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345678888886543 69999887 999999997 578998888852
Q ss_pred --HHHHHHHhhccCCCCCCceEEEEeec
Q 026168 143 --IESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 143 --~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
+....|.+||.=|..+.--++++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 12346788999998655445555543
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.52 E-value=0.00051 Score=66.08 Aligned_cols=92 Identities=25% Similarity=0.336 Sum_probs=69.5
Q ss_pred EEEEeCchHHHHHHHHHHhhhC-----CCcEEEEcCCCCHHHHHHHHHHH----------------------hC----CC
Q 026168 64 GIIYCLSKNECVEVSNFLNQKC-----KIKTVYYHAGLAARQRVVVQKKW----------------------HT----GD 112 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~-----~~~~~~~h~~~~~~~r~~~~~~f----------------------~~----g~ 112 (242)
++|=+++++.+-.++..|-... .+.+..|||......|..+++.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 4888888888888888776431 24477899998777776655442 11 46
Q ss_pred ccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 113 VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 113 ~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
..|+|+|++.+.|+|+. .+++| .-|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhccccccc
Confidence 78999999999999973 44443 457899999999999999874
No 157
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.52 E-value=0.00047 Score=65.33 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=100.0
Q ss_pred hHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC---ccEEEEecc
Q 026168 46 EALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD---VQIVCATIA 121 (242)
Q Consensus 46 ~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~---~~vlvaT~~ 121 (242)
.|++.|.+++..- ..+.+++.|+.-..-..-+..+|.-. +++-..+.|....++|-..++.|.... ..+|.+|-+
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~-~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR-EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh-hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 4555555555321 25778999998888777888888764 788889999999999999999999543 457899999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeec
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
.+.|+|+...+.||.||..+++-...|+--|+-|-|+.-.+-++..-
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999977666555543
No 158
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.44 E-value=0.00069 Score=64.50 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHhcc----------cCCCcEEEEeCchHHHHHHHHHHhh
Q 026168 44 SKEALKQIGQLIKDR----------FKDQCGIIYCLSKNECVEVSNFLNQ 83 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~----------~~~~~~iIF~~~~~~~~~l~~~L~~ 83 (242)
+.+|+..|.++|++. .+++++||||+..++|..|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 567787777777531 1346799999999999999998854
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.43 E-value=0.0014 Score=58.11 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHh---cccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-CccE-EEEe
Q 026168 45 KEALKQIGQLIK---DRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQI-VCAT 119 (242)
Q Consensus 45 ~~~~~~l~~~l~---~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~v-lvaT 119 (242)
..|++.|.+.|. +....-+.|||..-....+.+...|.+. |+.+.-+-|+|++..|...++.|++. .++| |++-
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSL 697 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSL 697 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEe
Confidence 456677665443 2223457899999999999999999884 99999999999999999999999965 5665 5667
Q ss_pred ccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC--CceEEEEeecCcHH
Q 026168 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL--PSVCIVLYQKKDFS 172 (242)
Q Consensus 120 ~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~--~g~~i~l~~~~~~~ 172 (242)
.+.|..+|+-....|+.+|+=+++..-.|...|.-|-|+ +-..+-|.-.+..+
T Consensus 698 kAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 698 KAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred ccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 889999999999999999988899888887777777764 55666666544443
No 160
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.20 E-value=0.0038 Score=58.82 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
..|....+..+... ..+.++||.++++..+..+++.|++.++..+..+||+++..+|.+.+....+|..+|+|+|....
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34544444333322 14668999999999999999999887788999999999999999999999999999999997433
Q ss_pred ccccccCccEEEEeCC
Q 026168 124 MGIDKPDVRFVIHNTL 139 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~ 139 (242)
. ..+.++.+||..+.
T Consensus 253 ~-~p~~~l~liVvDEe 267 (679)
T PRK05580 253 F-LPFKNLGLIIVDEE 267 (679)
T ss_pred c-ccccCCCEEEEECC
Confidence 2 45667888876553
No 161
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.0037 Score=56.81 Aligned_cols=78 Identities=10% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNT 138 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~ 138 (242)
.+.++||.++++.-+..+++.|++.++..+..+||+++..+|.+.+....+|+.+|+|+|..+-. ..++++.+||..+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 46689999999999999999998877888999999999999999999999999999999975432 3566788777544
No 162
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.10 E-value=0.0031 Score=52.50 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHhCCCccEEEEeccccccccccC--------ccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 103 VVQKKWHTGDVQIVCATIAFGMGIDKPD--------VRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 103 ~~~~~f~~g~~~vlvaT~~~~~Gid~p~--------v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
...+.|.+|+..|+|-|++++.||.+.. -++-|...+|++....+|..||+-|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 5667899999999999999999998752 34667889999999999999999999874
No 163
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.99 E-value=0.0051 Score=57.62 Aligned_cols=92 Identities=11% Similarity=0.076 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCC-CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 46 EALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCK-IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 46 ~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
.|.+.+++++.... .++++||.++....+..+...|++.++ ..+..+|+++++.+|.+.+....+|+.+|+|.|-.+-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 45555666665443 467899999999999999999998887 7899999999999999999999999999999996533
Q ss_pred ccccccCccEEEEeC
Q 026168 124 MGIDKPDVRFVIHNT 138 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~ 138 (242)
- .=+++..+||..+
T Consensus 252 F-aP~~~LgLIIvdE 265 (665)
T PRK14873 252 F-APVEDLGLVAIWD 265 (665)
T ss_pred E-eccCCCCEEEEEc
Confidence 2 2344556666544
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.96 E-value=0.018 Score=54.25 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCcc--EEEEe
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVR--FVIHN 137 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~--~Vi~~ 137 (242)
.+..+-||++|...++.+++.... +..++..++|.-+..+ + +.| ++++|++=|++...|+++.... -|.-|
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~-~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~y 353 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCAR-FTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAY 353 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHh-cCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhceEEEEE
Confidence 566788999999999999988876 4888888888765542 2 234 5789999999999999987543 34434
Q ss_pred CCC----CCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 138 TLS----KSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 138 ~~p----~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
=-| .++.+..|++||+ |.=.....+++++..
T Consensus 354 vk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 354 VKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred ecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 223 3566789999999 443566677777654
No 165
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.94 E-value=0.0062 Score=57.50 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid~p~v~~Vi 135 (242)
.+.+++|.++|+.-+...++.+++. ++.++..+||+++..+|.++++.+.+|+..|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 5678999999999998888777652 3688999999999999999999999999999999975 44457788888877
Q ss_pred Ee
Q 026168 136 HN 137 (242)
Q Consensus 136 ~~ 137 (242)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 43
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0048 Score=57.97 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 44 SKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
...|.+.++.++.... .++++||-++-+.....+.+.|+..++.++..+||++++.+|...+.+..+|+.+|+|.|-.
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 3456666777666543 46689999999999999999999889999999999999999999999999999999999954
No 167
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.59 E-value=0.015 Score=54.55 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc-ccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG-MGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~-~Gid~p~v~~Vi 135 (242)
.+.+++|-++|+.-+..+++.+.+. ++.++..+||+++..+|...++...+|+.+|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 5678999999999999888777653 368999999999999999999999999999999998644 356777888777
Q ss_pred E
Q 026168 136 H 136 (242)
Q Consensus 136 ~ 136 (242)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 168
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.56 E-value=0.0018 Score=64.93 Aligned_cols=96 Identities=20% Similarity=0.334 Sum_probs=79.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCH-----------HHHHHHHHHHhCCCccEEEEeccccccccccC
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAA-----------RQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD 130 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~-----------~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~ 130 (242)
-.+|+||+.+..+..+.+.+.......+..+.|.+.+ ..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3579999999999888888876544445555554322 23677888999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 131 VRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 131 v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|+.++.|....+|+|+.||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996653
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.33 E-value=0.036 Score=52.07 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec----cccccccccCccEEEEeCCCC------
Q 026168 73 ECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI----AFGMGIDKPDVRFVIHNTLSK------ 141 (242)
Q Consensus 73 ~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~----~~~~Gid~p~v~~Vi~~~~p~------ 141 (242)
-++++++.|.+.+ +.++.... +..+++.|. ++.+|||+|. ++. +++..|+..|...
T Consensus 439 Gter~eeeL~~~FP~~~V~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pD 505 (665)
T PRK14873 439 GARRTAEELGRAFPGVPVVTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQD 505 (665)
T ss_pred cHHHHHHHHHHHCCCCCEEEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCC
Confidence 3566666666543 23444322 234788886 5999999998 444 3677777665432
Q ss_pred ------CHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHH
Q 026168 142 ------SIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 142 ------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~ 179 (242)
...-+.|-.||+||.+..|.+++..++.. ..+..+.+
T Consensus 506 fRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~-~~~~~l~~ 548 (665)
T PRK14873 506 LRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL-PTVQALIR 548 (665)
T ss_pred cChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC-HHHHHHHh
Confidence 35567899999999999999998865544 33444433
No 170
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.22 E-value=0.029 Score=54.63 Aligned_cols=77 Identities=9% Similarity=0.102 Sum_probs=64.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid~p~v~~Vi 135 (242)
.+.+++|.++|+.-+...++.+++. ++.++..++|..+..++.++++.+.+|+++|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4678999999999999998877753 3567889999999999999999999999999999974 44567788888877
Q ss_pred E
Q 026168 136 H 136 (242)
Q Consensus 136 ~ 136 (242)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 171
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.041 Score=53.00 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhh---CC-CcEEE-EcCCCCHHHHHHHHHHHhCCCccEEEEe
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQK---CK-IKTVY-YHAGLAARQRVVVQKKWHTGDVQIVCAT 119 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~---~~-~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vlvaT 119 (242)
+..+-.+..+.-.. .++++++.++|..-+..+++.|.+- .+ ..+.. |||.|+..+++.++++|.+|..+|||+|
T Consensus 110 KTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 110 KTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred hhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEe
Confidence 34455555544332 5688999999998888887777641 12 33333 9999999999999999999999999999
Q ss_pred cccc
Q 026168 120 IAFG 123 (242)
Q Consensus 120 ~~~~ 123 (242)
+.+-
T Consensus 189 s~FL 192 (1187)
T COG1110 189 SQFL 192 (1187)
T ss_pred HHHH
Confidence 8754
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.99 E-value=0.0092 Score=56.47 Aligned_cols=122 Identities=25% Similarity=0.293 Sum_probs=91.5
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhh------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQK------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
.++..+....-.+.++||-+-=.....|..+|... -...+...|+.+...+..++.+....|..+++++|.++.
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceee
Confidence 33333333334567899998888777777776542 134577899999888888899988899999999999999
Q ss_pred ccccccCccEEEEeCCCC------------------CHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 124 MGIDKPDVRFVIHNTLSK------------------SIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~p~------------------~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
.-+-+.++.+||..+.-. +.....||.||+||. ++|.|..+.+...++
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFE 777 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHHH
Confidence 999888888888644321 456779999999998 788888877654444
No 173
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.05 Score=48.86 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc--ccccccccCccEEEEeC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA--FGMGIDKPDVRFVIHNT 138 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~--~~~Gid~p~v~~Vi~~~ 138 (242)
...+|||.++.-+--++..+++++ ......+|--.+...-..+...|..|...||+-|.- +=+--++.+|+.||.|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e-~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE-EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh-hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 345799999999999999999986 566666666666666677888899999999999975 44677889999999999
Q ss_pred CCCCHH---HHHHHhhccCCCC----CCceEEEEeecCcHHHHHHHH
Q 026168 139 LSKSIE---SYYQESGRAGRDN----LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 139 ~p~~~~---~y~Qr~GR~gR~g----~~g~~i~l~~~~~~~~~~~~~ 178 (242)
+|..+. +++-+.+|+.-.| ....|.++|+.-|.-.+..++
T Consensus 631 pP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 631 PPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred CCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 999875 5566777764433 457788999988877665554
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=95.59 E-value=0.056 Score=50.75 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=87.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh-----CC------------CcEEEEcCCCCHHHHHHHHHHHhCC--C-ccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK-----CK------------IKTVYYHAGLAARQRVVVQKKWHTG--D-VQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~-----~~------------~~~~~~h~~~~~~~r~~~~~~f~~g--~-~~vlvaT~ 120 (242)
+.++|||..+....+.+.+.|.+. -| ..-.-+.|..+..+|++.+.+|.+. - .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 567899999998888888888752 01 1123466788889999999999853 2 35788999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCc
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~ 170 (242)
+...|||+-..+.+|.+|..++..-=.|.+-|.-|.|+.-.|+++=--.+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 99999999999999999999999999999999999998877776544333
No 175
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.56 E-value=0.083 Score=52.71 Aligned_cols=77 Identities=8% Similarity=0.091 Sum_probs=63.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid~p~v~~Vi 135 (242)
.+.+++|.++|+.-+..+++.+.+.+ +.++..++|+.+..++.++++...+|..+|+|+|.. +...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 56789999999999999988887532 467888999999999999999999999999999964 44456677888776
Q ss_pred E
Q 026168 136 H 136 (242)
Q Consensus 136 ~ 136 (242)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 176
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.16 Score=46.49 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=54.1
Q ss_pred EEEEeCchHHHHHHHHHHhh---hC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-ccccCccE
Q 026168 64 GIIYCLSKNECVEVSNFLNQ---KC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMG-IDKPDVRF 133 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~---~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id~p~v~~ 133 (242)
+||.++|++-|..+++.+.. .. +..+..++|+++...+. ..++.| .+|+|+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999888877654 23 56789999999886665 444446 99999995 56666 78888888
Q ss_pred EEE
Q 026168 134 VIH 136 (242)
Q Consensus 134 Vi~ 136 (242)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 874
No 177
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.75 E-value=1.6 Score=40.94 Aligned_cols=104 Identities=23% Similarity=0.175 Sum_probs=68.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh------CCCcEEEEcCCCCHHHHHHHHHHHh----CCCccEEEEe--cccccccccc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK------CKIKTVYYHAGLAARQRVVVQKKWH----TGDVQIVCAT--IAFGMGIDKP 129 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~------~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vlvaT--~~~~~Gid~p 129 (242)
+=+++|.++.+-...+.+.+... -+.+-+++-..-+ -+.+++.|+ .|.-.+|+|- --++.|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 45899999999888888877642 1223334433333 244555554 4555566554 5689999998
Q ss_pred C--ccEEEEeCCCCC--------------------------------HHHHHHHhhccCCCCCCceEEEEeec
Q 026168 130 D--VRFVIHNTLSKS--------------------------------IESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 130 ~--v~~Vi~~~~p~~--------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
+ .+.||..|+|+. +...-|-+|||=|.-++=.+|.+++.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 6 778999998863 12346888999998655555666543
No 178
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.59 E-value=0.31 Score=45.29 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid~p~v~~Vi 135 (242)
.+.++...++|.--|+..+..+.+ .+++.+..+.|++..+.|.++++...+|+++++|.|.+ +...+++.+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 577899999997666655554443 25889999999999999999999999999999999987 55688888888777
Q ss_pred E
Q 026168 136 H 136 (242)
Q Consensus 136 ~ 136 (242)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 179
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.05 E-value=0.41 Score=47.15 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=68.9
Q ss_pred hcccCCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-cccccccccCc
Q 026168 56 KDRFKDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-AFGMGIDKPDV 131 (242)
Q Consensus 56 ~~~~~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gid~p~v 131 (242)
+...+++++.|.|+|.=-|+.-++.+.++ ++.++..+..-.+.+++..+++..++|+++|+|.|- .++.++-+.+.
T Consensus 638 kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdL 717 (1139)
T COG1197 638 KAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDL 717 (1139)
T ss_pred HHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecC
Confidence 33346789999999999999888888764 467788898889999999999999999999999996 47888999898
Q ss_pred cEEE
Q 026168 132 RFVI 135 (242)
Q Consensus 132 ~~Vi 135 (242)
-++|
T Consensus 718 GLlI 721 (1139)
T COG1197 718 GLLI 721 (1139)
T ss_pred CeEE
Confidence 8877
No 180
>PRK14701 reverse gyrase; Provisional
Probab=93.82 E-value=0.25 Score=51.09 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=53.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh-----CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK-----CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
.+.+++|.++|+.-+..+++.|+.- .+..+..+||+++..++.+.++.+.+|..+|||+|..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999888887752 2456789999999999999999999999999999975
No 181
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.39 E-value=0.73 Score=41.85 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-ccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMG-IDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id~p~v 131 (242)
.+.+||-++|++-|..+...+.+ .++.+..+++|+.+...+...++ + .+.|+|||. .+..| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCccccce
Confidence 55799999999988888776654 24566889999988766554443 2 478999994 55555 477788
Q ss_pred cEEEE--------eCCCCCHHHHHHHhhccCC
Q 026168 132 RFVIH--------NTLSKSIESYYQESGRAGR 155 (242)
Q Consensus 132 ~~Vi~--------~~~p~~~~~y~Qr~GR~gR 155 (242)
.++|. .|+-..+...+++++|.-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88873 4455577888888888877
No 182
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.70 E-value=0.74 Score=37.72 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCC----ccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccC-CCCCCc
Q 026168 86 KIKTVYYHAGLAARQRVVVQKKWHTGD----VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAG-RDNLPS 160 (242)
Q Consensus 86 ~~~~~~~h~~~~~~~r~~~~~~f~~g~----~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~g-R~g~~g 160 (242)
++.+..++|+.+... -.|.++. ..|+|.=+.++||+-+++.........+....++.||.=.-| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 478899998765533 4455443 789999999999999999999988888998889999864444 556677
Q ss_pred eEEEEeecCcHHHHHHHH
Q 026168 161 VCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~ 178 (242)
.|-++.++.-...+..+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 888888766555444333
No 183
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.64 E-value=1.3 Score=34.84 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----F-GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gid~p~ 130 (242)
.+.++||.++++..+...+..+..- .+..+..++|+.+..+...... +...|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999888877666542 3677888999988755543322 67889999942 2 22356677
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+.++|.-+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 77776433
No 184
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.63 E-value=0.74 Score=43.24 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh----CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc-ccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK----CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM-GIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gid~p 129 (242)
...++||.|+|+.-+..+++.+... .+..+..+||+.+...+...+ .+..+|+|+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 4457999999999988887776542 267888999998765544333 24578999994 3333 36778
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++.+||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8888774
No 185
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.54 E-value=0.49 Score=47.57 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCc---EEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccc-ccc-cc-C
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIK---TVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM-GID-KP-D 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~-Gid-~p-~ 130 (242)
.+.+++|.++|+.-+..+++.+..- .+.. +..+||+++..++...++.+.+|..+|+|+|...-. .++ +. +
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~ 199 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPK 199 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCC
Confidence 4678999999999999888877652 2333 346899999999999999999999999999974321 111 11 5
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
++++|.-+
T Consensus 200 ~~~iVvDE 207 (1171)
T TIGR01054 200 FDFIFVDD 207 (1171)
T ss_pred CCEEEEeC
Confidence 66666433
No 186
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.44 E-value=0.2 Score=47.40 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHhCCCccEEEEeccccccccccCccEEE--------EeCCCCCHHHHHHHhhccCCCCC
Q 026168 105 QKKWHTGDVQIVCATIAFGMGIDKPDVRFVI--------HNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 105 ~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi--------~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
-++|..|+..|-|-+.+++.||-+..-+.|+ -..+|++..--+|..||+-|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 3579999999999999999999987655444 57899999999999999999864
No 187
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.24 E-value=0.99 Score=40.78 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..+.+||.++++.-+......|.. .+..+..++++.+..++..++.....|+.+++++|.-
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKA-SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 356799999999988888888876 5899999999999999999999999999999999963
No 188
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.67 E-value=1 Score=40.53 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh----CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc-ccccccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK----CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFG-MGIDKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gid~p~ 130 (242)
..++||.++|++-+..+++.++.- .+..+..++|+.+...+...+. +..+|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347899999999999888777642 1577889999988766543332 5689999994 332 3567788
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+.+||.-+
T Consensus 148 l~~lViDE 155 (460)
T PRK11776 148 LNTLVLDE 155 (460)
T ss_pred CCEEEEEC
Confidence 88887433
No 189
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.31 E-value=1.4 Score=39.28 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~v 131 (242)
..++||.++|++-+..+++.+.. ..+..+..++|+.+...+...+ .+..+|+|+|.. ....+++.++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35799999999988887765543 3577899999998876654333 356789999962 2245677788
Q ss_pred cEEEEeC
Q 026168 132 RFVIHNT 138 (242)
Q Consensus 132 ~~Vi~~~ 138 (242)
.+||.-+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 8777543
No 190
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.03 E-value=1.6 Score=40.64 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
..+.++|.++++.-+......|+. .+..+..+||+++..++..++.....|.+++++.|.
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 356789999999988888888877 589999999999999999999999999999999885
No 191
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.51 E-value=4.5 Score=36.76 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=51.9
Q ss_pred CCcEEEEeCchHHHHHHHH---HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSN---FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~---~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~v 131 (242)
++-.+|.|+|++.+..+.. .|.+.+++.+..+||+.+..++...++ -...++|||.- --.++|+.++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 3446888999998777664 444446889999999999988876665 34779999952 2246788787
Q ss_pred cEEE
Q 026168 132 RFVI 135 (242)
Q Consensus 132 ~~Vi 135 (242)
.+.|
T Consensus 372 S~LV 375 (731)
T KOG0339|consen 372 SYLV 375 (731)
T ss_pred eEEE
Confidence 7665
No 192
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.48 E-value=1.5 Score=39.69 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=57.7
Q ss_pred CcEEEEeCchHHHHHHHHH---HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-------ccccccccCc
Q 026168 62 QCGIIYCLSKNECVEVSNF---LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-------FGMGIDKPDV 131 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~---L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-------~~~Gid~p~v 131 (242)
-++||.|+|++-+-.++.. |..-..+.+...-|||+-+.++..+. ...+|+|||+- -+.+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccccce
Confidence 4789999999976666554 44434677888889999888777665 46899999963 3457777778
Q ss_pred cEEEEeCCCCCHHHH
Q 026168 132 RFVIHNTLSKSIESY 146 (242)
Q Consensus 132 ~~Vi~~~~p~~~~~y 146 (242)
.+.|.-....-+++|
T Consensus 329 EVLvlDEADRMLeeg 343 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEG 343 (691)
T ss_pred eEEEechHHHHHHHH
Confidence 777765554444444
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.23 E-value=11 Score=36.37 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=77.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCC--CCCCeEEEEEec---------------ChhHHHHHHHHHh---cccC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSF--DRPNLKYEVIGK---------------SKEALKQIGQLIK---DRFK 60 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~--~r~~i~~~v~~~---------------~~~~~~~l~~~l~---~~~~ 60 (242)
++.|.|+.|- +.+..-|+.+.++.+..+. ++.++.-.++.. ..+-...|-+.|. ...+
T Consensus 484 iLtSGTLsP~--~s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rvVp 561 (945)
T KOG1132|consen 484 ILTSGTLSPM--DSFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVARVVP 561 (945)
T ss_pred EEecccccCc--hhHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHhhcc
Confidence 4678888876 6777788887776666432 223333333321 1112223333332 2223
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh-----C-CCcEEEEcCCCCHHHHHHHHHHHhC--------CCccEEEEeccccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK-----C-KIKTVYYHAGLAARQRVVVQKKWHT--------GDVQIVCATIAFGMGI 126 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~-----~-~~~~~~~h~~~~~~~r~~~~~~f~~--------g~~~vlvaT~~~~~Gi 126 (242)
.+ .|||.++....+++...++.. . +.+-..+ .=-+..+-.+++..|.+ |..-..||--..++|+
T Consensus 562 ~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 562 YG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred cc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 33 899999998888875544431 0 1111111 11123333444555542 3445678888999999
Q ss_pred cccC--ccEEEEeCCCC
Q 026168 127 DKPD--VRFVIHNTLSK 141 (242)
Q Consensus 127 d~p~--v~~Vi~~~~p~ 141 (242)
|+.+ -+.||-.|+|+
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 9985 55899999986
No 194
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=89.65 E-value=4.3 Score=30.50 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHH-HHHHHHHHHhCCCccEEEEecc-----c-ccccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAAR-QRVVVQKKWHTGDVQIVCATIA-----F-GMGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~-~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gid~p 129 (242)
...++||.++++..++.+.+.+...+ +..+..+|++.+.. +....+ .+...|+|+|.. + ...+++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 34589999999999999998887643 34788899988754 222222 678999999942 1 2234666
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++++||.
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 6777664
No 195
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=89.49 E-value=1 Score=41.07 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=46.1
Q ss_pred cEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 63 CGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
-+||+++|++-|..+..+|.. ..++.+..+.|||+...++.++.. ...|+|||.-
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPG 322 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPG 322 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecch
Confidence 389999999999999998875 247889999999998777777665 6789999963
No 196
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.20 E-value=1.6 Score=40.49 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc--cccccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM--GIDKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gid~p~ 130 (242)
..++||.++|++-+..+++.+.. ..++.+..+||+.+...+...+ .+..+|||+|. .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhh
Confidence 35799999999999888876654 2467789999998876554433 34678999995 3322 356677
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 160 v~~lVi 165 (572)
T PRK04537 160 CEICVL 165 (572)
T ss_pred eeeeEe
Confidence 777664
No 197
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.66 E-value=0.086 Score=49.51 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=94.4
Q ss_pred ChhHHHHHHHHHhccc-CC-CcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC-cc-EEEEe
Q 026168 44 SKEALKQIGQLIKDRF-KD-QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD-VQ-IVCAT 119 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~-~~-~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlvaT 119 (242)
...++..++.++.... .. .+++||+.-..-+..+...|... ++....+.|.|+...|.+.+..|.++. .+ .+++.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~-~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Sl 598 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFK-GFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSL 598 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhc-ccccchhhhhhHHHHHHhhhcccccCccHHHHHHHH
Confidence 3455666666664211 12 48999999888888777777653 788889999999999999999999553 23 45788
Q ss_pred ccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEE
Q 026168 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIV 164 (242)
Q Consensus 120 ~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~ 164 (242)
.+.+.|+|+-...+|+..|+=+++..--|.+-|+-|-|+.-.+.+
T Consensus 599 kag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 599 KAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999988999999999999999887655433
No 198
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.66 E-value=3.4 Score=36.70 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=51.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-cccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----F-GMGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gid~p~v 131 (242)
..++||.++|++-+..+++.+.. ..+..+..++|+.+.......+ .+..+|+|+|.. + ...+++.++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 35799999999999888765543 3478889999987765443322 345799999962 2 234677788
Q ss_pred cEEEEeC
Q 026168 132 RFVIHNT 138 (242)
Q Consensus 132 ~~Vi~~~ 138 (242)
.++|.-.
T Consensus 159 ~~lViDE 165 (423)
T PRK04837 159 QVVVLDE 165 (423)
T ss_pred cEEEEec
Confidence 8877543
No 199
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=87.46 E-value=3.6 Score=37.05 Aligned_cols=72 Identities=11% Similarity=0.256 Sum_probs=51.7
Q ss_pred cEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccCccE
Q 026168 63 CGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPDVRF 133 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~v~~ 133 (242)
++||.++|++-+..+.+.+.. ..+..+..++|+.+...+... + .+..+|+|+|.- ....+++.++.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999998888877764 235678888999876554322 2 367899999952 234567788888
Q ss_pred EEEeC
Q 026168 134 VIHNT 138 (242)
Q Consensus 134 Vi~~~ 138 (242)
||.-+
T Consensus 153 lViDE 157 (456)
T PRK10590 153 LVLDE 157 (456)
T ss_pred EEeec
Confidence 77533
No 200
>PRK09401 reverse gyrase; Reviewed
Probab=86.76 E-value=2.8 Score=42.32 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=54.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcE--EEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccc----cccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKT--VYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGM----GIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~--~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~----Gid~p~ 130 (242)
.+.+++|.++|+.-+..+++.++.- .+..+ ...|++++..++....+.+.+|..+|+|+|...-. .+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 4678999999999999988887752 23333 34556677778888888899999999999953111 333334
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
++++|.
T Consensus 202 ~~~lVv 207 (1176)
T PRK09401 202 FDFVFV 207 (1176)
T ss_pred cCEEEE
Confidence 666664
No 201
>PRK13766 Hef nuclease; Provisional
Probab=86.74 E-value=3.2 Score=40.02 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC---cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI---KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~ 130 (242)
.++++||.++++..+...++.+++.++. .+..++|+.+..+|..... ..+|+|+|.- +..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhh
Confidence 5678999999998888777777765444 7888999999887765443 3579999952 233456667
Q ss_pred ccEEEEeCCC
Q 026168 131 VRFVIHNTLS 140 (242)
Q Consensus 131 v~~Vi~~~~p 140 (242)
+++||.-..-
T Consensus 132 ~~liVvDEaH 141 (773)
T PRK13766 132 VSLLIFDEAH 141 (773)
T ss_pred CcEEEEECCc
Confidence 8877754443
No 202
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=86.33 E-value=5.1 Score=37.52 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=52.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+.+||.++++.-+......|+. .+..+..++++.+..++..++.....|+++++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 46799999999988888888876 489999999999999998899999999999999884
No 203
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=85.38 E-value=3.1 Score=27.99 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...++++||++-..+...+..|+. .|+.+..+.||++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~-~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQ-NGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHH-CCCCEEEecCCHH
Confidence 456899999987788888889876 4778899999974
No 204
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.71 E-value=5.9 Score=35.82 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~v 131 (242)
..++||.++|+.-+..+++.+.. ..+..+..++|+.+.... .+.+..+..+|+|+|.- -...+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 35789999999999888876654 246788899998765443 34555678899999962 1234566677
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
++||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 77764
No 205
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=84.54 E-value=6.5 Score=37.57 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHHHhcccCCCcEEEEeCchHHHHHHHHHHhhh-CCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEecccccc
Q 026168 52 GQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQK-CKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCATIAFGMG 125 (242)
Q Consensus 52 ~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~~~~~G 125 (242)
+.+|++...+++-||.|++-- .+.--+.+.+- ..+.+..|||. +.+|.++...+..+ .++|||+|--+..|
T Consensus 439 layLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 439 LAYLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 344555445778899998632 22222222221 25789999999 68899999998866 89999999765544
No 206
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=84.00 E-value=7.3 Score=39.08 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=49.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC--CCccEEEEecc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT--GDVQIVCATIA 121 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~ 121 (242)
.+.+||.++++.-+..-...|.. .++.+..+.|+++..++..++..+.. |+++||++|.-
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 45789999999887744444444 48999999999999999999998876 89999999973
No 207
>PTZ00110 helicase; Provisional
Probab=83.97 E-value=4.7 Score=37.24 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-ccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMG-IDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id~p~v 131 (242)
...+||.++|++-+..+.+.+..- .++.+...+|+.+...+... +.. ..+|+|+|. .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 456899999999998888777652 34677888888876554333 233 478999995 34443 567778
Q ss_pred cEEEEe
Q 026168 132 RFVIHN 137 (242)
Q Consensus 132 ~~Vi~~ 137 (242)
.+||.-
T Consensus 279 ~~lViD 284 (545)
T PTZ00110 279 TYLVLD 284 (545)
T ss_pred cEEEee
Confidence 877743
No 208
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.59 E-value=3.8 Score=41.02 Aligned_cols=101 Identities=11% Similarity=-0.102 Sum_probs=71.4
Q ss_pred HhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEE
Q 026168 55 IKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFV 134 (242)
Q Consensus 55 l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~V 134 (242)
++......++|||+........+...+... ++..... ++ -++....+..|++ --..++-+...+.|+|+-+..+|
T Consensus 1215 iK~k~~qekvIvfsqws~~ldV~e~~~~~N-~I~~~~~-~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hv 1289 (1394)
T KOG0298|consen 1215 IKFKNEQEKVIVFSQWSVVLDVKELRYLMN-LIKKQLD-GE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHV 1289 (1394)
T ss_pred HhccCcCceEEEEEehHHHHHHHHHHHHhh-hhHhhhc-cC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhh
Confidence 333335678999998776666666555432 2222222 22 2344556777765 33456788899999999999999
Q ss_pred EEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 135 IHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 135 i~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
+..++=.+...-.|-+||.-|-|++-
T Consensus 1290 fl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1290 FLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred heeccccCchHHHhhhhhhhhccccc
Confidence 99998889999999999999999653
No 209
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.30 E-value=10 Score=33.31 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=56.6
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc----
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF---- 122 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~---- 122 (242)
-|-.++.+ .....++|.++|++-+..+++.+.. -.|..+..+-||++.. .+....+ .+..|||||.-.
T Consensus 119 Il~~LL~~-p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~--~q~~~L~--kkPhilVaTPGrL~dh 193 (476)
T KOG0330|consen 119 ILQRLLQE-PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM--LQANQLS--KKPHILVATPGRLWDH 193 (476)
T ss_pred HHHHHHcC-CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH--HHHHHhh--cCCCEEEeCcHHHHHH
Confidence 33444443 2456799999999999988877764 2467889999998763 3334444 467789999632
Q ss_pred ---cccccccCccEEEE
Q 026168 123 ---GMGIDKPDVRFVIH 136 (242)
Q Consensus 123 ---~~Gid~p~v~~Vi~ 136 (242)
..|+.+..+++.|.
T Consensus 194 l~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 194 LENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHhccCccHHHhHHHhh
Confidence 36777777776653
No 210
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=80.02 E-value=4.9 Score=27.57 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
..++++|||.+-..+...+..|+.. |+.+..+.||+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~-G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER-GYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc-CceeEEeCCcHH
Confidence 4568999999888888999999874 888888888874
No 211
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=79.69 E-value=12 Score=35.82 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=45.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
.+.++.|.++|..-|...++.+.. .+|+++..+.|+++..+|.... ..+|+++|..
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~ 154 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY------ACDITYGTNN 154 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc------CCCEEEECCC
Confidence 566799999999988888877664 3588999999999987776555 2689999987
No 212
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=74.94 E-value=27 Score=31.82 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=57.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC---cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec------cccccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI---KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI------AFGMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gid~p~ 130 (242)
.++++|+..+|+--+..-+..+.+-++. .+..+.|..++++|...+. +.+|+|||+ +.+--+|+.+
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHH
Confidence 3448999999998888877777765554 5789999999999976653 357999994 5555679989
Q ss_pred ccEEEEeCC
Q 026168 131 VRFVIHNTL 139 (242)
Q Consensus 131 v~~Vi~~~~ 139 (242)
+.++|.-..
T Consensus 132 v~~lifDEA 140 (542)
T COG1111 132 VSLLIFDEA 140 (542)
T ss_pred ceEEEechh
Confidence 998885443
No 213
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=74.74 E-value=9.7 Score=25.63 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~-G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA-GFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc-CCceEEEcCCCHH
Confidence 5678999999988999999999885 65 5777888763
No 214
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=74.34 E-value=49 Score=31.49 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEE-------------------------cCCCC
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYY-------------------------HAGLA 97 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~-------------------------h~~~~ 97 (242)
...+.-.+..++.. .+.++||.++++..|..++..|+.-++.+ |.+| .+.--
T Consensus 39 gs~kt~~~a~~~~~--~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i 116 (655)
T TIGR00631 39 GSGKTFTMANVIAQ--VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEI 116 (655)
T ss_pred CcHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHH
Confidence 34444445555543 35689999999999999999998755555 4444 11112
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccccccccccC----ccEEEEeCCCCCHHHHHHHh
Q 026168 98 ARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD----VRFVIHNTLSKSIESYYQES 150 (242)
Q Consensus 98 ~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~----v~~Vi~~~~p~~~~~y~Qr~ 150 (242)
...|..++..+.++.-.|+|||-.+-.|+=-|. ..+.+..|-..+..++..+.
T Consensus 117 ~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~L 173 (655)
T TIGR00631 117 ERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (655)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHH
Confidence 245778888888877778888866666765443 44667777777777766654
No 215
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=74.29 E-value=21 Score=33.77 Aligned_cols=69 Identities=6% Similarity=-0.041 Sum_probs=48.6
Q ss_pred HHHhcccCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccc
Q 026168 53 QLIKDRFKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDK 128 (242)
Q Consensus 53 ~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~ 128 (242)
..+.....+.+++|.++|..-|...++.+.. .+|+++..+.|++++.+|.... ..+|+++|.. +-|.|.
T Consensus 136 p~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDy 207 (656)
T PRK12898 136 PAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDY 207 (656)
T ss_pred HHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhh
Confidence 3333334677899999999988887776654 3588999999999876655433 4688888853 334443
No 216
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=73.88 E-value=47 Score=27.07 Aligned_cols=84 Identities=7% Similarity=0.065 Sum_probs=57.2
Q ss_pred CCCcEEEEeCc-----------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC----CccEEEEeccccc
Q 026168 60 KDQCGIIYCLS-----------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG----DVQIVCATIAFGM 124 (242)
Q Consensus 60 ~~~~~iIF~~~-----------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g----~~~vlvaT~~~~~ 124 (242)
+.+.+||+.+. .++++.|++.|++ +|+.+. .+..++..+-.+.+++|.+. ...++|+- .++-
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~-lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sH 83 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQS-LGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSH 83 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHH-CCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCC
Confidence 45567787775 4689999999987 699886 46778899999999999863 34555554 5666
Q ss_pred cccccCccEEEEeCC-CCCHHHHHHHh
Q 026168 125 GIDKPDVRFVIHNTL-SKSIESYYQES 150 (242)
Q Consensus 125 Gid~p~v~~Vi~~~~-p~~~~~y~Qr~ 150 (242)
|. .+.|+-.|- +.++.+.....
T Consensus 84 G~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 84 GE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred CC----CCeEEEecCCEEEHHHHHHhc
Confidence 63 255555554 44555555544
No 217
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.63 E-value=28 Score=24.35 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=44.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCC--CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-cccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCK--IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMG 125 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~G 125 (242)
..++++|.+++...++...+.+..... ..+..+++.....+.. ........|+++|.. +.+.
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~~~~~~ 93 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPGRLLDE 93 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcHHHHHH
Confidence 457899999999999888887776543 7788888876554443 333456788888865 4433
No 218
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=73.18 E-value=40 Score=25.91 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhC-CCcEE-EEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKC-KIKTV-YYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
..+-+..|+..... .+.++.++-.+...++.++..|++.+ +..+. .+|+-+++.+...+++..+....++++
T Consensus 33 g~dl~~~l~~~~~~--~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQ--RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 34555556555443 35577777788888899999998864 55555 566778888889999998877776664
No 219
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=73.17 E-value=8.3 Score=26.17 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...++||||++-..+...+..|.. .|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~-~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLA-LGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHH-cCCCCEEEeCCCHH
Confidence 566899999998888888888866 476 6888888863
No 220
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.16 E-value=21 Score=29.63 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=61.2
Q ss_pred cEEEEeCchHHHHHHHHHHhh----hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec------cccccccccCcc
Q 026168 63 CGIIYCLSKNECVEVSNFLNQ----KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI------AFGMGIDKPDVR 132 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~~----~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gid~p~v~ 132 (242)
.++|.|.|++-+..+.....+ ..+.++..+.||++-+.-++.++. -..|+|+|. +-.+.+++.++.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 579999999988877765443 125689999999987655555544 678999996 234567777888
Q ss_pred EEEEeCCCC-----CHHHHHHHhhccCCCCC
Q 026168 133 FVIHNTLSK-----SIESYYQESGRAGRDNL 158 (242)
Q Consensus 133 ~Vi~~~~p~-----~~~~y~Qr~GR~gR~g~ 158 (242)
+-|.-.+.+ ++..=+|.+=|.--.++
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 766544443 23334676666644433
No 221
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=73.15 E-value=5.9 Score=26.46 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~ 98 (242)
...++||||.+-..+..++..|... |+. +..+.|++..
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~-G~~~v~~l~GG~~~ 93 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLREL-GFKNVYLLDGGYKE 93 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHc-CCCceEEecCCHHH
Confidence 5678999999988899999999874 765 8888998743
No 222
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=73.01 E-value=24 Score=34.59 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=45.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
.+..+.|.++|..-|...++.+.. .+|+++..++|+++..+|.... ..+|+++|..
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 556799999999988888877764 3578999999999998876555 4789999964
No 223
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=72.20 E-value=13 Score=34.68 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=49.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+.+||-.+-..-.+.=.+.|+.. |+.+.++||.++.+++..++..+..|++++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA-GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc-CceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 557899998877666555666664 89999999999999999999999999999997664
No 224
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=71.68 E-value=45 Score=25.89 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
+-+..|++.... .+.++.++=.+...++.+++.|++++ +..+..+||..++++...+.+..+....++|+
T Consensus 35 dl~~~l~~~~~~--~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 35 DLMEELCQRAGK--EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 444444444332 33466666677778888999998764 56666669999888878888888776665553
No 225
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.66 E-value=33 Score=28.24 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=32.0
Q ss_pred cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCC
Q 026168 43 KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK 86 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~ 86 (242)
.....+..-+.++......+..|.||.|++.+.+......+..|
T Consensus 45 kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g 88 (252)
T COG0052 45 KTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTG 88 (252)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhC
Confidence 45556666667776655567789999999999988777765434
No 226
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=71.33 E-value=4.5 Score=39.76 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=41.7
Q ss_pred CccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC
Q 026168 112 DVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD 156 (242)
Q Consensus 112 ~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~ 156 (242)
..+.|++-+++..|.|.|++-.+.-+.-..+...-.|.+||+-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 689999999999999999999999999888989999999999884
No 227
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=70.31 E-value=5 Score=38.66 Aligned_cols=46 Identities=28% Similarity=0.239 Sum_probs=42.6
Q ss_pred CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC
Q 026168 111 GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD 156 (242)
Q Consensus 111 g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~ 156 (242)
...+.|.+-.++..|.|=|+|=.++-.....|-.+=.|.+||+-|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4579999999999999999999999999899999999999999983
No 228
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=69.99 E-value=60 Score=26.64 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=41.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEE-EEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTV-YYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
+.++.++=.+...++.+++.|+++.+..+. .+||-.++++...+.+.......++|+
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 346666666777788999999876667654 567778777777788888877666654
No 229
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=69.76 E-value=26 Score=22.39 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=39.2
Q ss_pred EEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 026168 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMG 125 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 125 (242)
.++.|....++..+.+.... +..+....|.....+....+..+... ..|++++|.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~--~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF--GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC--CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 47888888888888877752 34455555655445555666665544 6799999865444
No 230
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=69.48 E-value=11 Score=24.64 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...++||||.+...+..++..|......++..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 56789999999888999999998753345777777764
No 231
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=68.54 E-value=15 Score=26.54 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHhhhCCCcEEEEcCCCCH
Q 026168 60 KDQCGIIYCL-SKNECVEVSNFLNQKCKIKTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~-~~~~~~~l~~~L~~~~~~~~~~~h~~~~~ 98 (242)
+..+++|||. +-..+...+..|+. .|+++..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~-~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLES-LGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHH-cCCceeEeCCcHHH
Confidence 5668999996 45667777777866 58889999999743
No 232
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=68.48 E-value=25 Score=33.92 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-ccccc---------cc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-AFGMG---------ID 127 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~G---------id 127 (242)
+..++|+.++|+.-+......|++- .+..+..++|+.+..+|..+ ....+|+|+|. .+..+ ..
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i-----~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA-----REHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH-----hcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 4568999999999988888877652 25678889999987766332 23478999995 22222 12
Q ss_pred ccCccEEEEeC
Q 026168 128 KPDVRFVIHNT 138 (242)
Q Consensus 128 ~p~v~~Vi~~~ 138 (242)
+.++++||.-.
T Consensus 155 l~~l~~vViDE 165 (742)
T TIGR03817 155 LRRLRYVVIDE 165 (742)
T ss_pred HhcCCEEEEeC
Confidence 56788887543
No 233
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=68.40 E-value=64 Score=26.29 Aligned_cols=85 Identities=8% Similarity=0.073 Sum_probs=59.7
Q ss_pred CCCcEEEEeCc------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC---CCccEEEEeccccc
Q 026168 60 KDQCGIIYCLS------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT---GDVQIVCATIAFGM 124 (242)
Q Consensus 60 ~~~~~iIF~~~------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~---g~~~vlvaT~~~~~ 124 (242)
+.+.+||+.+. .++++.|++.|++ +|+.+. .+..++..+-.+.+.+|.+ ....++|+- .++-
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~-lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sH 84 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFES-LGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSH 84 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHH-CCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCC
Confidence 34556666663 4789999999988 699885 5678888888899999984 234444333 5667
Q ss_pred cccccCccEEEEeC-CCCCHHHHHHHhh
Q 026168 125 GIDKPDVRFVIHNT-LSKSIESYYQESG 151 (242)
Q Consensus 125 Gid~p~v~~Vi~~~-~p~~~~~y~Qr~G 151 (242)
|.. +.|+-.| .+.++.+.++...
T Consensus 85 G~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 85 GEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CCC----CEEEEecCcEEEHHHHHHhhc
Confidence 754 6677666 6667777777764
No 234
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=68.30 E-value=27 Score=32.07 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=47.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc-ccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFG-MGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gid~p~ 130 (242)
.+.++||.++|++-+..+.+.++. ..+..+..+.|+.+..++. ..+. ....|+|+|. .+. .++++.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~-~~~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQ-QGVELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhc-CCCCEEEECHHHHHHHHHcCCccchh
Confidence 345799999999988777665543 2355667777776544332 2223 3478999994 333 3567778
Q ss_pred ccEEEEe
Q 026168 131 VRFVIHN 137 (242)
Q Consensus 131 v~~Vi~~ 137 (242)
+.+||.-
T Consensus 271 v~~lViD 277 (518)
T PLN00206 271 VSVLVLD 277 (518)
T ss_pred eeEEEee
Confidence 8877743
No 235
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.14 E-value=43 Score=30.94 Aligned_cols=129 Identities=9% Similarity=0.090 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHcCCCCceEEecCCCCC---CeEEEEEe-c-ChhHHHHHHHHHhc---------ccCCCcEEEEeCchH
Q 026168 7 ATQSVRLDILKALRIPHALVLETSFDRP---NLKYEVIG-K-SKEALKQIGQLIKD---------RFKDQCGIIYCLSKN 72 (242)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~~~i~~~~~r~---~i~~~v~~-~-~~~~~~~l~~~l~~---------~~~~~~~iIF~~~~~ 72 (242)
+.+.+.+.+...|++..+..|....-+. .-...|.. . ....+..++.++.. ...+.-++|.++|++
T Consensus 143 L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTRE 222 (708)
T KOG0348|consen 143 LHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRE 222 (708)
T ss_pred CCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHH
Confidence 4566777788888776665443221111 11111221 1 12223444444321 113445799999999
Q ss_pred HHHHHHHHHhhhCCCcEEEEc-CCCCHHHHHHHHHHHhCCCccEEEEecc-------ccccccccCccEEEE
Q 026168 73 ECVEVSNFLNQKCKIKTVYYH-AGLAARQRVVVQKKWHTGDVQIVCATIA-------FGMGIDKPDVRFVIH 136 (242)
Q Consensus 73 ~~~~l~~~L~~~~~~~~~~~h-~~~~~~~r~~~~~~f~~g~~~vlvaT~~-------~~~Gid~p~v~~Vi~ 136 (242)
-|..+++.+++-+. ...++- |.+--.|+.+.++.=....++|||+|.- --..+++..+++||.
T Consensus 223 L~~Q~y~~~qKLl~-~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 223 LALQIYETVQKLLK-PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred HHHHHHHHHHHHhc-CceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999988876322 222211 2111123333333333345899999963 123566677788774
No 236
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=67.95 E-value=31 Score=35.99 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=52.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---------------hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc----
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---------------KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA---- 121 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---------------~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~---- 121 (242)
+.++|+.++++.-+..+.+.|+. ..++++..+||+.+..+|.+.+ ....+|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHH
Confidence 35789999999888777776642 1367889999999998886543 346799999952
Q ss_pred -cc-cc-ccccCccEEEEeC
Q 026168 122 -FG-MG-IDKPDVRFVIHNT 138 (242)
Q Consensus 122 -~~-~G-id~p~v~~Vi~~~ 138 (242)
+. .+ ..+.++++||.-+
T Consensus 113 LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 113 MLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred HHhhhhhhhhccCCEEEEec
Confidence 22 22 2567888888533
No 237
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=67.93 E-value=82 Score=29.93 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEE--------------------cCC--CC---H
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYY--------------------HAG--LA---A 98 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~--------------------h~~--~~---~ 98 (242)
..+.-.+..+++. .+.++||-+++...++.+++.|..-++.. +.+| +.. -+ .
T Consensus 43 s~ka~lia~l~~~--~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~ 120 (652)
T PRK05298 43 SGKTFTMANVIAR--LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIE 120 (652)
T ss_pred cHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHH
Confidence 3344344455443 35689999999999999999887644444 4444 111 11 3
Q ss_pred HHHHHHHHHHhCCCccEEEEeccccccccccC----ccEEEEeCCCCCHHHHHHHhh
Q 026168 99 RQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD----VRFVIHNTLSKSIESYYQESG 151 (242)
Q Consensus 99 ~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~----v~~Vi~~~~p~~~~~y~Qr~G 151 (242)
..|..++..+.+++..|+|+|..+-.++=-|+ ..+.+..|-..+..++..+.-
T Consensus 121 ~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~ 177 (652)
T PRK05298 121 RLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLV 177 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHH
Confidence 46788888888877667777755446664443 446677777777777666543
No 238
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=67.83 E-value=33 Score=33.85 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=43.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
.+..++|.++|+.-|...++.+.. .++.++..+.|+++..++...+ ..+|+++|+.
T Consensus 134 ~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 134 TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 344588889999988888877764 3578899999999988775443 3789999964
No 239
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=67.77 E-value=17 Score=32.91 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+-.+||.|+|++-+-.++..+++ .. ++.+..+-||... ..-.+.... .+++||||+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~---~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNF---SVEADKLVK-GCNILIATP 213 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccc---hHHHHHhhc-cccEEEeCC
Confidence 34689999999977666554443 22 5667777777532 233344444 789999996
No 240
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=66.47 E-value=6 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=30.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC--cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI--KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~--~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~-G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKEL-GLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHc-CCccceeeecchHH
Confidence 4668999999988888899999874 77 6889999974
No 241
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=66.42 E-value=33 Score=25.33 Aligned_cols=80 Identities=8% Similarity=0.047 Sum_probs=39.9
Q ss_pred HHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccc
Q 026168 48 LKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGI 126 (242)
Q Consensus 48 ~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 126 (242)
...+..++.+.. .+.+++|+|.+.+.++.|-+.|-.. .-..-.=|+-.... ......|+|+++... -
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~-~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~ 82 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF-SPDSFLPHGLAGEP---------PAARQPVLITWDQEA--N 82 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS-STT----EEETT-S---------STT--SEEEE-TTS----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC-CCCCCCCCcccCCC---------CCCCCeEEEecCccc--C
Confidence 355556665433 5789999999999999999999863 33332333322111 112257999987743 1
Q ss_pred cccCccEEEEeCC
Q 026168 127 DKPDVRFVIHNTL 139 (242)
Q Consensus 127 d~p~v~~Vi~~~~ 139 (242)
..+.-+++||.+.
T Consensus 83 ~~~~~~vLinL~~ 95 (137)
T PF04364_consen 83 PNNHADVLINLSG 95 (137)
T ss_dssp --S--SEEEE--S
T ss_pred CCCCCCEEEECCC
Confidence 1223567888763
No 242
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=66.07 E-value=20 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
...+++|||++-..+...+..|.+ .|+ .+..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~-~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLR-QGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHH-cCCccEEEecCCHHH
Confidence 366899999998888888888887 476 47889998654
No 243
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.83 E-value=37 Score=30.77 Aligned_cols=71 Identities=7% Similarity=0.107 Sum_probs=50.4
Q ss_pred cEEEEeCchHHHHHHHHHHh---hh-CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc---cccccC
Q 026168 63 CGIIYCLSKNECVEVSNFLN---QK-CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM---GIDKPD 130 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~---~~-~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~---Gid~p~ 130 (242)
-++|..+|++-+..+.+-+. +. .++++..+-||.+-+ +-++.|++...+|||+|+ ++.+ ++|+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 46999999987766554333 22 467889999996653 457788888999999995 4554 556556
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
..++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 776664
No 244
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=65.68 E-value=8.7 Score=26.35 Aligned_cols=37 Identities=22% Similarity=0.502 Sum_probs=29.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+. +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~-G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKER-GFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHh-CCcceeeechhHH
Confidence 5668999999877788888888764 774 777888864
No 245
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=65.61 E-value=67 Score=32.11 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=47.9
Q ss_pred hCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCC--C-CC-ceEEEEeecCcHHHHHHHH
Q 026168 109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRD--N-LP-SVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 109 ~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~--g-~~-g~~i~l~~~~~~~~~~~~~ 178 (242)
....+++||.++.+-.|.|-|..+ .+-.|-|----..+|-+-|+.|. + ++ |..+-|.. -.+.+.+.+
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e~l~~Al 660 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKEALKKAL 660 (962)
T ss_pred cCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHHHHHHHH
Confidence 356799999999999999999776 45567777667889999999996 4 23 44444443 334444443
No 246
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=65.60 E-value=10 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=28.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+.++++||.+-..+...+..|.. .|+.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~-~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQ-MGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHH-cCCEEEEecCcHH
Confidence 56799999987778888888866 5888777888863
No 247
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=64.87 E-value=19 Score=25.07 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-c-EEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-K-TVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~-~~~~h~~~~~ 98 (242)
...+++|||.+-..+...+..|.. .|+ + +..+.||+..
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~-~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLIN-AGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHH-CCCCcceeEecCCHHH
Confidence 356899999988778778888877 487 3 7888999743
No 248
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=64.56 E-value=19 Score=25.28 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=28.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
+..++++||++-..+..++..|.. .|+ ++..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~-~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALEL-LGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHH-cCCCCeeeeCChH
Confidence 466899999998888888888877 476 477788876
No 249
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=64.20 E-value=12 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...++++||++-..+...+..|.+. |+ ++..+.|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~-g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAI-SAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHc-CCccEEEeeCCHH
Confidence 4568999999988888888888764 55 6777889863
No 250
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=63.81 E-value=25 Score=26.22 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|+|.+-..+..++..|... |+ ++..+.||+.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~-G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAAL-TVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHc-CCcCeEEecCcHH
Confidence 4578999999988888888888874 55 7899999963
No 251
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=63.51 E-value=60 Score=24.27 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=44.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCC----CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe-----cccccc-ccccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCK----IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT-----IAFGMG-IDKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-id~p~ 130 (242)
..+++|.+++...+..+...+..... .....+++... ......+.++...++++| +....+ .+...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 46899999998888888777765431 33445555432 334555666666999999 333332 34445
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.++|.
T Consensus 130 ~~~iIi 135 (201)
T smart00487 130 VDLVIL 135 (201)
T ss_pred CCEEEE
Confidence 655554
No 252
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.31 E-value=11 Score=26.32 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSK--NECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~--~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...+++|||++. ..+..++..|.. .|+.+..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~-~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAE-LGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH-cCCeEEEecCCHH
Confidence 567899999875 367788888876 4888888999864
No 253
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=62.49 E-value=13 Score=25.61 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred EEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHH------------HHHHHHHHHhCCCccEEEEecccccccc
Q 026168 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAAR------------QRVVVQKKWHTGDVQIVCATIAFGMGID 127 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~------------~r~~~~~~f~~g~~~vlvaT~~~~~Gid 127 (242)
.||.+.....+..+++.|... ...+....|.+-.. .+.+.+.....+.-.|++|||.=..|-.
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~-~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~ 75 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGE-EYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGEL 75 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTT-TEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCC-CEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHH
Confidence 378888999999999999732 45566666654221 1244555555667789999998777644
No 254
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=62.34 E-value=42 Score=32.63 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=44.0
Q ss_pred ccCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCC-HHHHHHHHHHHhCCCccEEEEec
Q 026168 58 RFKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLA-ARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 58 ~~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~-~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
...+..+.|.++|..-|...++.+.. .+|+++..+.|+++ +.+|.... ..+|+++|.
T Consensus 116 al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 116 ALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 34677899999999888877766653 36899999999999 77776432 378999994
No 255
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.08 E-value=22 Score=30.95 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=42.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+--++||.+|++-+..+++.+.. ..+.++..+.|+++.-.....+ ..+..++|+|.
T Consensus 74 ~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 344579999999999999987754 3467899999997664333222 45778999995
No 256
>PRK00254 ski2-like helicase; Provisional
Probab=62.05 E-value=23 Score=33.98 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh--hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-ccccCc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ--KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMG-IDKPDV 131 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~--~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id~p~v 131 (242)
.+.++|+.++++.-+...++.+.. .++.++..++|+.+...+ + .+..+|+|+|. .+..+ ..+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467899999999999988877663 357889999999875322 1 25678999994 22222 235677
Q ss_pred cEEEEe
Q 026168 132 RFVIHN 137 (242)
Q Consensus 132 ~~Vi~~ 137 (242)
.+||.-
T Consensus 140 ~lvViD 145 (720)
T PRK00254 140 KLVVAD 145 (720)
T ss_pred CEEEEc
Confidence 777743
No 257
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=61.99 E-value=16 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCCcEEEEeCc--hHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLS--KNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~--~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
+..+++|||.+ +..+...+..|... |+ ++..+.||+.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~-G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSEL-GYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc-CccCEEEccCCHH
Confidence 36689999998 44467778888774 65 5778888864
No 258
>PRK02362 ski2-like helicase; Provisional
Probab=61.60 E-value=23 Score=34.08 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=49.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccccc-cccCc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMGI-DKPDV 131 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gi-d~p~v 131 (242)
+++++++.++++.-+.+.++.+... ++.++..++|+...... + -+..+|+|||. .+..+. .+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~------~-l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE------W-LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc------c-cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 5778999999999999998888752 37889999998765331 1 14578999994 222222 24567
Q ss_pred cEEEEeC
Q 026168 132 RFVIHNT 138 (242)
Q Consensus 132 ~~Vi~~~ 138 (242)
.+||.-+
T Consensus 139 ~lvViDE 145 (737)
T PRK02362 139 TCVVVDE 145 (737)
T ss_pred CEEEEEC
Confidence 7777433
No 259
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=61.48 E-value=90 Score=25.84 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=41.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCC-CcEE-EEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCK-IKTV-YYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~-~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
+.++-.+=.+...+++.+..|+++.. .++. .+||-.++.+.+.++++....+.+||.
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 35666666777788888888988654 4555 455888888888888888877777665
No 260
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=60.58 E-value=6 Score=37.43 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh---CCCccEEEEeccc
Q 026168 47 ALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH---TGDVQIVCATIAF 122 (242)
Q Consensus 47 ~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~---~g~~~vlvaT~~~ 122 (242)
++..|...++.. ..+.+++||..-....+.+..++..+ + ....+.|.....+|+.+++.|+ ..+...|.+|.+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~-~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYE-G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhcc-C-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 444444444322 25679999999999999999999865 4 7778999999999999999999 3467889999988
Q ss_pred ccc
Q 026168 123 GMG 125 (242)
Q Consensus 123 ~~G 125 (242)
|.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 766
No 261
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.42 E-value=75 Score=24.35 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhC-CCcEEE-EcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKC-KIKTVY-YHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~~-~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
.+-+..|++.... .+.++.++-.+...++.+++.|++.. +..+.. +|+-+...+...+++..+....++++
T Consensus 32 ~dl~~~ll~~~~~--~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 32 SDLMPALLELAAQ--KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4455556555543 35677777888888888888888753 455554 78888887777788888777666554
No 262
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.03 E-value=1.4e+02 Score=27.44 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=54.4
Q ss_pred HHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHH-HHHHHHHHhCCCccEEEEecc----
Q 026168 51 IGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQ-RVVVQKKWHTGDVQIVCATIA---- 121 (242)
Q Consensus 51 l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~-r~~~~~~f~~g~~~vlvaT~~---- 121 (242)
++.++... .+.-+++|.++++.-+..++..+.. ..|..|....|.-+-++ ..+...+-....++|||+|..
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 44444332 2345799999999988888877765 23555666666544322 122222222345799999963
Q ss_pred ---ccccccccCccEEEEeC
Q 026168 122 ---FGMGIDKPDVRFVIHNT 138 (242)
Q Consensus 122 ---~~~Gid~p~v~~Vi~~~ 138 (242)
.-.|+|+.+.++.|.-.
T Consensus 284 Hl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred hccCCCCcchhhceEEEech
Confidence 24688899999876433
No 263
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=59.87 E-value=25 Score=29.50 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccc
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMG 125 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 125 (242)
+-....++.++.. -+|+|........|-..+.- ..+...||..-..+....+++....|+. |.+.+|+.-=|
T Consensus 14 Dit~Ral~~L~~~-----d~i~~EDTR~t~kLL~~~~I--~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ 85 (276)
T TIGR00096 14 DITRRALELLACV-----DLFAEEDTRTSKLLLHLGII--ATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPL 85 (276)
T ss_pred HHhHHHHHHHHhC-----CEEEecCchhHHHHHHhcCC--CCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCC
Confidence 3334445555432 58999999988888888863 3456677776666666677777777765 89999988878
Q ss_pred ccccCcc
Q 026168 126 IDKPDVR 132 (242)
Q Consensus 126 id~p~v~ 132 (242)
|.-|+-.
T Consensus 86 ISDPG~~ 92 (276)
T TIGR00096 86 ISDPGHL 92 (276)
T ss_pred cCCccHH
Confidence 8766543
No 264
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=58.80 E-value=9.7 Score=25.99 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|.. .|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~-~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQD-MGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHH-cChHHhEeecCcHH
Confidence 456899999887778888888876 4765 778888863
No 265
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=57.92 E-value=64 Score=31.76 Aligned_cols=57 Identities=7% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCCcEEEEeCchH----HHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKN----ECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~----~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+..++|++.+++. +.+++.+++.... +..+..|+|..++.+|+ .+..+..+||+++.
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNp 175 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNP 175 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCH
Confidence 3446799999975 6677777776631 37889999999998887 55568899999994
No 266
>PTZ00424 helicase 45; Provisional
Probab=57.09 E-value=1e+02 Score=26.86 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
...++||.++++.-+..+.+.+... .+..+....|+....+. ...+.++ .+|+|+|.-. ...+.+.+
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~ 170 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDD 170 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCccccc
Confidence 4567999999999888887766542 24456667777664332 2333333 6899999632 22345677
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+.+||.-+
T Consensus 171 i~lvViDE 178 (401)
T PTZ00424 171 LKLFILDE 178 (401)
T ss_pred ccEEEEec
Confidence 88777443
No 267
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=56.03 E-value=48 Score=32.84 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
++-+||.++|++.+..+.+.+.. .+++.+...+|+....+. +...++| ..|+|||.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 44579999999999988877654 368889999998776544 5666778 88999994
No 268
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=55.93 E-value=16 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
+..++++||.+-..+...+..|... |+ .+..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~-G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL-GYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc-CCccceecCCcHH
Confidence 4568999999988888888888774 76 4777778763
No 269
>PRK01415 hypothetical protein; Validated
Probab=55.36 E-value=37 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~ 98 (242)
.+.++++||.+-..++..+.+|.+. |+. +..+.||+..
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~-Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSI-GYDEVYHLKGGILQ 208 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc-CCCcEEEechHHHH
Confidence 5678999999999999999999885 775 8889999744
No 270
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=54.53 E-value=45 Score=24.85 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=50.8
Q ss_pred cChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEE-ec
Q 026168 43 KSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA-TI 120 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva-T~ 120 (242)
....+...+..++.+.. .+.+++|+|++.+.++.|-+.|-.. .-..-.=|+-.... ......|+|+ ++
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~-~~~sFlPH~~~~~~---------~~~~~PV~l~~~~ 79 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF-RDESFLPHGLAGEG---------PAAGQPVLLTWPG 79 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC-CCCcCCCCCcCCCC---------CCCCCCEEEEcCC
Confidence 34556667777776544 5779999999999999999999762 32233334422111 0124578887 22
Q ss_pred cccccccccCccEEEEeCC
Q 026168 121 AFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~ 139 (242)
. -+.++-.++||.+.
T Consensus 80 ~----~~~~~~~~LinL~~ 94 (142)
T PRK05728 80 K----RNANHRDLLINLDG 94 (142)
T ss_pred C----CCCCCCcEEEECCC
Confidence 1 23344566887763
No 271
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=54.16 E-value=59 Score=25.71 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=43.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHH--------HHHHHHHHhCCCc-cEEEEecccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQ--------RVVVQKKWHTGDV-QIVCATIAFGMG 125 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~--------r~~~~~~f~~g~~-~vlvaT~~~~~G 125 (242)
+++.|..|.+.+++..+.+.=. +...-.++||.+++-+ -...+++...+.+ -|++||+.-..|
T Consensus 78 d~~~icVVe~p~Dv~a~E~~~~--f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 78 DKSQLCVVEEPKDVLALEKTGE--FRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred CCceEEEEcchHHHHHHHHhcc--cCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 4567888888888887765433 3445566777665532 3456667778888 999999876655
No 272
>PRK13767 ATP-dependent helicase; Provisional
Probab=53.43 E-value=36 Score=33.55 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh--------------hC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-cc-
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ--------------KC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FG- 123 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~--------------~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~- 123 (242)
+.++|+.++++.-+..+++.|.+ .. +..+...||+.+..++.+.+. ....|+|+|.- +.
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAI 159 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHH
Confidence 34689999999888776654331 11 557889999999888765443 45789999962 11
Q ss_pred ----cc--ccccCccEEEEeC
Q 026168 124 ----MG--IDKPDVRFVIHNT 138 (242)
Q Consensus 124 ----~G--id~p~v~~Vi~~~ 138 (242)
.. -.+.++++||.-.
T Consensus 160 ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 160 LLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred HhcChhHHHHHhcCCEEEEec
Confidence 11 1356788877533
No 273
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=53.24 E-value=1e+02 Score=30.00 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh-hCCCcEEEEcCCCCHHHHHHHHHHHh-CCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ-KCKIKTVYYHAGLAARQRVVVQKKWH-TGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~-~~~~~~~~~h~~~~~~~r~~~~~~f~-~g~~~vlvaT~ 120 (242)
..+|.||.|+-- ........+++ ..++++..|||. +++|....+++. .|...|+|+|-
T Consensus 216 ~~GPfLVi~P~S-tL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKS-TLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHh-hHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 467889999843 22222222222 137889999999 678888777765 67899999984
No 274
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=52.48 E-value=46 Score=24.51 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=26.2
Q ss_pred CCCcEEEEeCc---hHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLS---KNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~---~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
+..++||||.+ -..+..+...|+. +|. ++..|.|+++
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~-~G~~~v~ildGG~~ 134 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARL-CGHPDVAILDGGFF 134 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHH-cCCCCeEEeCCCHH
Confidence 46689999976 4456667767765 464 4888999864
No 275
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=52.30 E-value=58 Score=30.30 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=39.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+--+||..+|++-|..+.+.|.+- .+++++.+-||..-+. +.-+-.+++|||||+
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEech
Confidence 335799999999999999988762 3567777778865322 222336789999996
No 276
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.66 E-value=45 Score=30.25 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=38.3
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+.+||+.+|++-+..++..-.+- .+..+...+|+.+- .....+....+.|+|||.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~----~~q~~~~~~gcdIlvaTp 210 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL----GAQLRFIKRGCDILVATP 210 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch----hhhhhhhccCccEEEecC
Confidence 57899999999999988766542 23455666676332 233445567899999993
No 277
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=51.16 E-value=1.8e+02 Score=27.11 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=64.2
Q ss_pred EEEEeCchHHHHHHHHHHhhh------CCCcEEEEcCCCCHHHHHHHHHHHh----CCCccEE--EEeccccccccccCc
Q 026168 64 GIIYCLSKNECVEVSNFLNQK------CKIKTVYYHAGLAARQRVVVQKKWH----TGDVQIV--CATIAFGMGIDKPDV 131 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~------~~~~~~~~h~~~~~~~r~~~~~~f~----~g~~~vl--vaT~~~~~Gid~p~v 131 (242)
.+.|..+.--.+.+....... ...+. .+-+.-+..|-...++..+ +|.-.|| ||-.-.+.|||+.+-
T Consensus 533 ~v~ff~sylYmesiv~~w~~~gil~ei~k~KL-~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hh 611 (755)
T KOG1131|consen 533 IVCFFPSYLYMESIVSRWYEQGILDEIMKYKL-LFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHH 611 (755)
T ss_pred eEEEEehHHHHHHHHHHHHHHhHHHHHhhCce-EEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccc
Confidence 577777776666665544432 11222 2334433434344555444 4555555 777889999999886
Q ss_pred c--EEEEeCCCCCH------------------------------HHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 132 R--FVIHNTLSKSI------------------------------ESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 132 ~--~Vi~~~~p~~~------------------------------~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
. .||.+++|... ..-.|-.||+-|. +....++++-.+.+
T Consensus 612 yGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDkRf 682 (755)
T KOG1131|consen 612 YGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADKRF 682 (755)
T ss_pred cCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeehhh
Confidence 6 89999999731 1224788898876 45556666655433
No 278
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=51.13 E-value=41 Score=23.74 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CCCcEEEEeCc-hHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLS-KNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~-~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...++++||.+ -..+..++..|... |+. +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~-G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF-GHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc-CCCCEEEecCCHH
Confidence 46689999988 47788888888774 654 888888874
No 279
>PRK01172 ski2-like helicase; Provisional
Probab=50.32 E-value=64 Score=30.66 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=46.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh--hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-cccccCc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ--KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GIDKPDV 131 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~--~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gid~p~v 131 (242)
.+.++|+.++++.-+.+.++.+.+ ..|..+....|+.+...+ +. +..+|+|+|.- +.+ ...+.++
T Consensus 64 ~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v 136 (674)
T PRK01172 64 AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------FI-KRYDVVILTSEKADSLIHHDPYIINDV 136 (674)
T ss_pred hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------hh-ccCCEEEECHHHHHHHHhCChhHHhhc
Confidence 456899999999998888877763 247788888888754321 11 35689999961 222 2235567
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
.+||.
T Consensus 137 ~lvVi 141 (674)
T PRK01172 137 GLIVA 141 (674)
T ss_pred CEEEE
Confidence 77764
No 280
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=49.56 E-value=28 Score=23.78 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=28.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
..+++|||.+-..+...+..|... |+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~-G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKC-GVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHc-CCCCEEEEeCcHH
Confidence 567999998877888888888874 764 778889874
No 281
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=49.21 E-value=1e+02 Score=30.28 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=43.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
.+..+-|.++|..-|..-++.+.. .+|+++..+.|+++..+|...+. .+|+++|..
T Consensus 121 ~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 455677889998877777766654 35899999999999998887753 788888853
No 282
>COG1204 Superfamily II helicase [General function prediction only]
Probab=48.90 E-value=59 Score=31.55 Aligned_cols=69 Identities=9% Similarity=-0.013 Sum_probs=49.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHh--hhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec----cccc-cc-cccCcc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLN--QKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI----AFGM-GI-DKPDVR 132 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~--~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~----~~~~-Gi-d~p~v~ 132 (242)
+.+++--|+++.-+++.++.+. +.+|+++..++|+...... .-+..+|+|+|. .+-| .. -+..|+
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~ 148 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPEKLDSLTRKRPSWIEEVD 148 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchHHhhHhhhcCcchhhccc
Confidence 5788999999999999999988 5689999999999864331 115688999993 2222 21 233577
Q ss_pred EEEE
Q 026168 133 FVIH 136 (242)
Q Consensus 133 ~Vi~ 136 (242)
+||.
T Consensus 149 lvVi 152 (766)
T COG1204 149 LVVI 152 (766)
T ss_pred EEEE
Confidence 7664
No 283
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=48.82 E-value=47 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|+|.+-..+...+..|... |+. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~-G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQ-GFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHC-CchheEEecCCHH
Confidence 4567899998888888888888874 664 778888864
No 284
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.07 E-value=86 Score=28.15 Aligned_cols=72 Identities=13% Similarity=0.268 Sum_probs=48.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHh--CCCccEEEEec------ccccccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWH--TGDVQIVCATI------AFGMGIDKP 129 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlvaT~------~~~~Gid~p 129 (242)
+-+++|-.+|++-+....+.+++- .+.....+.|+-+ +.++|. ++..+|++||. .+.+-+++.
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~------~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~ 163 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDS------IEEQFILLNENPDIIIATPGRLLHLGVEMTLTLS 163 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccch------HHHHHHHhccCCCEEEecCceeeeeehheecccc
Confidence 448999999999888777777652 1334454445432 334444 46788999996 455667788
Q ss_pred CccEEEEeC
Q 026168 130 DVRFVIHNT 138 (242)
Q Consensus 130 ~v~~Vi~~~ 138 (242)
.|.+||.-.
T Consensus 164 sveyVVfdE 172 (529)
T KOG0337|consen 164 SVEYVVFDE 172 (529)
T ss_pred ceeeeeehh
Confidence 899998543
No 285
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=46.79 E-value=41 Score=23.52 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
..++++||++-..+...+..|.+ .|+......||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~-~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSE-MGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHH-cCCCeEEecCCHH
Confidence 45799999998888888999976 4776555567753
No 286
>PRK05320 rhodanese superfamily protein; Provisional
Probab=45.82 E-value=31 Score=28.57 Aligned_cols=38 Identities=11% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~ 98 (242)
.+.++++||.+-..++..+.+|++. |+. +..+.||+..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~-Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEV-GIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc-CCcceEEeccCHHH
Confidence 4678999999999999999999875 774 8889999744
No 287
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=44.49 E-value=36 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.0
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHhhh-----------CCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCL-SKNECVEVSNFLNQK-----------CKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~-~~~~~~~l~~~L~~~-----------~~~-~~~~~h~~~~ 97 (242)
...++++||. +-..+...+..|+.. .|+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567899996 777788888888763 243 6888888864
No 288
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=44.39 E-value=1.8e+02 Score=24.26 Aligned_cols=72 Identities=11% Similarity=0.253 Sum_probs=48.5
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHH-HHHHHhC--CCccEEEEecccc
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVV-VQKKWHT--GDVQIVCATIAFG 123 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~-~~~~f~~--g~~~vlvaT~~~~ 123 (242)
.+.+.+.. .+..+|+...+.+..+++++.|..+.+..+.++--+++..+-.. +.+.... +.+.|||-.--++
T Consensus 21 ~~A~~lA~--~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g 95 (265)
T COG0300 21 ELAKQLAR--RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAGFG 95 (265)
T ss_pred HHHHHHHH--CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCCcC
Confidence 34444432 46678888888889999999998766777888888877655443 3434443 4788887664433
No 289
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=44.22 E-value=52 Score=22.40 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCcEEEEeCchHHHHHHHHH-----HhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNF-----LNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~-----L~~~~~~-~~~~~h~~~~ 97 (242)
....+|+||.+-......+.. |.. .|+ ++..+.||+.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~-~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKK-LGFKNVYILDGGFE 108 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHH-TTTSSEEEETTHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHH-cCCCCEEEecChHH
Confidence 455688889555544444444 665 476 8889999864
No 290
>PLN02160 thiosulfate sulfurtransferase
Probab=42.95 E-value=36 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...++++||.+-..+...+..|... |+ .+..+.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~-G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAA-GYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHc-CCCCeeecCCcHH
Confidence 4568999999999999999999874 76 4777888864
No 291
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=42.20 E-value=43 Score=24.20 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCccEEEEecccccccccc------CccEEEEeCC
Q 026168 101 RVVVQKKWHTGDVQIVCATIAFGMGIDKP------DVRFVIHNTL 139 (242)
Q Consensus 101 r~~~~~~f~~g~~~vlvaT~~~~~Gid~p------~v~~Vi~~~~ 139 (242)
-.+++....+|++.+.|-|.--.-|||++ .-++||.||-
T Consensus 63 t~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 63 TPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred cHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 35678889999999999998888888875 3458999883
No 292
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.48 E-value=1.3e+02 Score=21.37 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=26.7
Q ss_pred CeEEEEEe-----cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHH
Q 026168 35 NLKYEVIG-----KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFL 81 (242)
Q Consensus 35 ~i~~~v~~-----~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L 81 (242)
.+.|..++ ...+.+..+.+.+.+ ..+++++||.|-.++..|..+-
T Consensus 57 Gl~y~~iPv~~~~~~~~~v~~f~~~l~~--~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 57 GLQYVHIPVDGGAITEEDVEAFADALES--LPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp T-EEEE----TTT--HHHHHHHHHHHHT--TTTSEEEE-SCSHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCCHHHHHHHHHHHHh--CCCCEEEECCCChhHHHHHHHH
Confidence 45666555 223455566666654 3568999999999887776543
No 293
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=40.50 E-value=51 Score=22.85 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~ 96 (242)
...++++||.+-..+...+..|.+. |+.....-||+
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~-G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDM-GYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHc-CCCeEEecCCH
Confidence 3557899999988888888889874 77644444764
No 294
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=40.01 E-value=1.1e+02 Score=24.60 Aligned_cols=71 Identities=6% Similarity=-0.073 Sum_probs=35.0
Q ss_pred HHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcE---EEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 48 LKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKT---VYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 48 ~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~---~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
-+.|.+++.... .++++++++. ...-+.+.+.|.+. |..+ ..|.....+.......+.+..+.+.+++-|+
T Consensus 104 ~e~L~~~~~~~~~~~~~vL~~rg-~~~r~~l~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S 178 (240)
T PRK09189 104 GVRLAETVAAALAPTARLLYLAG-RPRAPVFEDRLAAA-GIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS 178 (240)
T ss_pred HHHHHHHHHHhcCCCCcEEEecc-CcccchhHHHHHhC-CCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC
Confidence 344555554332 3445555554 34446777777764 5543 2343332222333455666666655544443
No 295
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=40.00 E-value=60 Score=29.19 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=67.0
Q ss_pred hHHHHHHHHHcCCCCceE-EecC----CCCCCeE-EEEEec--ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 9 QSVRLDILKALRIPHALV-LETS----FDRPNLK-YEVIGK--SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~-i~~~----~~r~~i~-~~v~~~--~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
..+++.+++.++...... +..+ ....+.. |...+. .+.---.|..++. .+-+|||.+-..-...-.++
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHHH
Confidence 347778888887653211 1111 1122222 333332 2222233444443 34689999988777776677
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEec
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCATI 120 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~ 120 (242)
|.. +..++..+++.|+..||.+++.++..- .+++|--|.
T Consensus 81 L~~-LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 81 LKR-LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred HHh-cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 766 688999999999999999999999854 567776664
No 296
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=39.82 E-value=45 Score=23.60 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~ 98 (242)
...++++||.+-..+...+..|.. .|+. +..+.|++..
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~-~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQ-AGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHH-CCCCeEEECcCceec
Confidence 566799999998888889999977 4764 6667888653
No 297
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=39.63 E-value=2.5e+02 Score=24.34 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=36.3
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh
Q 026168 60 KDQCGIIYCL-SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109 (242)
Q Consensus 60 ~~~~~iIF~~-~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 109 (242)
++.+++|||. +-..+..++.+|.. .|+.+..+.||+.. .|...+..+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~-~G~~v~~L~GG~~a-wr~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKE-AGIDVPRLEGGYKA-YRRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHH-cCCCcEEEcCCHHH-HHHhhHHHHh
Confidence 4678999995 55678888889987 48888999999855 4565665555
No 298
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=39.04 E-value=1.6e+02 Score=21.86 Aligned_cols=75 Identities=12% Similarity=-0.011 Sum_probs=49.6
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc---CccEEE
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP---DVRFVI 135 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p---~v~~Vi 135 (242)
..++++.|+=.+....+.++.+|.++ +..+...|+....- .+.. .+.+|+|+......-++-. .=.+||
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t~~l-----~~~v--~~ADIVvsAtg~~~~i~~~~ikpGa~Vi 97 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKTIQL-----QSKV--HDADVVVVGSPKPEKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCCcCH-----HHHH--hhCCEEEEecCCCCccCHHHcCCCCEEE
Confidence 46788999999999999999999875 88999999765321 1111 3456666554433334422 224688
Q ss_pred EeCCCC
Q 026168 136 HNTLSK 141 (242)
Q Consensus 136 ~~~~p~ 141 (242)
+++...
T Consensus 98 dvg~~~ 103 (140)
T cd05212 98 NCSPTK 103 (140)
T ss_pred EcCCCc
Confidence 877665
No 299
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=38.79 E-value=1.3e+02 Score=26.31 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=74.8
Q ss_pred EEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccc-----------ccCccE
Q 026168 65 IIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGID-----------KPDVRF 133 (242)
Q Consensus 65 iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid-----------~p~v~~ 133 (242)
-||. ++-+.....+..... +....++-..|.+............++..|||.-+.-..+=+ -.++++
T Consensus 140 ~V~a-t~GDl~~~~q~~~~~-~~~~lyfPt~m~~~~~~~~~~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kI 217 (360)
T PF07429_consen 140 HVFA-TRGDLAYFQQRYPRV-PASLLYFPTRMDPALTLSEKNKKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKI 217 (360)
T ss_pred eEEE-EcchHHHHHHHcCCC-CceEEEcCCCCchhhhccccccCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEE
Confidence 4564 677777777666543 445777777887754333333344678899998864333211 246889
Q ss_pred EEEeCCCCCHHHHHHHhhccCCC-CCCceEEEEeecCcHHHHHHHHHc
Q 026168 134 VIHNTLSKSIESYYQESGRAGRD-NLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 134 Vi~~~~p~~~~~y~Qr~GR~gR~-g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
+|-++-|.+-.+|++++=+.|.. -..+....+.+.-..+.+.+++.+
T Consensus 218 ivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~ 265 (360)
T PF07429_consen 218 IVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSR 265 (360)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHh
Confidence 99999998889999999888775 234455566666666666666654
No 300
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=38.53 E-value=1e+02 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhh
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQK 84 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~ 84 (242)
+.++++.+.++ +++.+.+|+++.++++++.+.|++.
T Consensus 176 ~~le~~~~~Lk---pgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 176 NVLEHVSDALK---PGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred HHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 34455555554 6789999999999999999999874
No 301
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=38.42 E-value=64 Score=29.11 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---C--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---C--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMGI 126 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gi 126 (242)
...++|.++|++-|..++..+.+- + ..+++=+.++|+... ...+..+...|+|+|. .++.|+
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhcc
Confidence 457899999999998888777641 1 234444555666543 4466678999999996 355665
No 302
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=38.13 E-value=96 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.2
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKN-ECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~-~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
++.++|+||.+-. .+...+..|... |+. +..+.||+.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~-G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAY-GYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhc-CCcceEEecCCHH
Confidence 5678999999754 566677777764 764 778889864
No 303
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=37.45 E-value=79 Score=31.01 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=35.7
Q ss_pred CCcEEEEe-CchHHHHHHHHHHhhh---C-----------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCc
Q 026168 61 DQCGIIYC-LSKNECVEVSNFLNQK---C-----------------------KIKTVYYHAGLAARQRVVVQKKWHTGDV 113 (242)
Q Consensus 61 ~~~~iIF~-~~~~~~~~l~~~L~~~---~-----------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 113 (242)
..+.|||+ +++.-+..+++.+.+- + ++++..++||.+.+... ... ....
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l-~~~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLD-PHRP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---Hhc-CCCC
Confidence 44678877 9888777666554431 1 35678889998764432 222 2456
Q ss_pred cEEEEe
Q 026168 114 QIVCAT 119 (242)
Q Consensus 114 ~vlvaT 119 (242)
.|||+|
T Consensus 137 ~IIVgT 142 (844)
T TIGR02621 137 AVIVGT 142 (844)
T ss_pred cEEEEC
Confidence 899999
No 304
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=37.41 E-value=75 Score=26.49 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=30.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
...++|+||++-..+..++..|.. +|+ ++..|.|++.+
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~-~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALAT-LDVPNVKLYDGAWSE 268 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHH-cCCCCceeeCCCHHH
Confidence 456899999999889888888875 577 48899998643
No 305
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=36.65 E-value=88 Score=26.72 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=29.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
.+.++|+||.+-..+..++..|+. +|+. +..|.|++.
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~-~G~~~v~~YdGs~~ 305 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHR-LGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHH-cCCCCeeEeCCCHH
Confidence 466899999998888888878875 5764 888999864
No 306
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.59 E-value=51 Score=28.44 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCcEEEEeCchHHHHHHH---HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe-----ccccccc-cccCc
Q 026168 61 DQCGIIYCLSKNECVEVS---NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT-----IAFGMGI-DKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~---~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~Gi-d~p~v 131 (242)
.-+++|.++|++-|-... ..|.+.++..+..-.||.+-. ..++.. ++...++|+| |.+..|+ ++.++
T Consensus 153 ~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c 228 (459)
T KOG0326|consen 153 VIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDC 228 (459)
T ss_pred ceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCChhHHHHHhcccccchhc
Confidence 346899999998665544 455556788899999997753 333332 4678899999 4677777 45555
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
...|.
T Consensus 229 ~~lV~ 233 (459)
T KOG0326|consen 229 VILVM 233 (459)
T ss_pred eEEEe
Confidence 55443
No 307
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=35.92 E-value=3.1e+02 Score=24.24 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=65.5
Q ss_pred HHHHHHHHhcccCCCcEEEEeC---------chHHHHHHHHHHhhhCCCcEE--EEcCCCCHHH-HHHHHHHHhCCCccE
Q 026168 48 LKQIGQLIKDRFKDQCGIIYCL---------SKNECVEVSNFLNQKCKIKTV--YYHAGLAARQ-RVVVQKKWHTGDVQI 115 (242)
Q Consensus 48 ~~~l~~~l~~~~~~~~~iIF~~---------~~~~~~~l~~~L~~~~~~~~~--~~h~~~~~~~-r~~~~~~f~~g~~~v 115 (242)
++.|-+.+.+ ...+.+|.|| |+++..++.++-.+. +..++ -+|+.+--.. +-........+-...
T Consensus 147 ~~~LE~~~~~--~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh-~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~ 223 (388)
T COG1168 147 FDALEKAFVD--ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLGGHKHIPFASLSERFADN 223 (388)
T ss_pred HHHHHHHHhc--CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHc-CCEEEeecccccccccCCCccchhhcChhhhcc
Confidence 4555555543 2347899997 677777888777664 66654 4777764433 222222222333455
Q ss_pred EEEeccccccccccCccE-EEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 116 VCATIAFGMGIDKPDVRF-VIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 116 lvaT~~~~~Gid~p~v~~-Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
.|+..+.+.+.|+++... .+...-+..-..|..|.-|.++.|-
T Consensus 224 ~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~ 267 (388)
T COG1168 224 SITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGP 267 (388)
T ss_pred eEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCC
Confidence 666677788999987663 2223334445788888887777753
No 308
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=34.62 E-value=94 Score=24.64 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc---EEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK---TVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~---~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..-+.|.+.+.....++++++.+.. ..-..+.+.|++. |.. +..|.. ..........+.+..+.+.+++-|+.
T Consensus 102 ~~s~~L~~~l~~~~~~~~vl~~~g~-~~~~~l~~~L~~~-g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS~ 177 (231)
T PF02602_consen 102 GSSEGLAELLKEQLRGKRVLILRGE-GGRPDLPEKLREA-GIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTSP 177 (231)
T ss_dssp SSHHHHHGGHHHCCTTEEEEEEESS-SSCHHHHHHHHHT-TEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESSH
T ss_pred CCHHHHHHHHHhhCCCCeEEEEcCC-CccHHHHHHHHHC-CCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECCH
Confidence 3445666666654455666666654 3356677888663 644 345555 66777788888888888887777764
No 309
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=34.31 E-value=2.6e+02 Score=23.86 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCcEEEEeC-chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh
Q 026168 61 DQCGIIYCL-SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109 (242)
Q Consensus 61 ~~~~iIF~~-~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 109 (242)
+++++|||. +-..+..++.+|.. .|+.+..+.||+.. -+......+.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~-~G~~v~~L~GG~~a-w~~~~~~~~~ 121 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQ-IGFRVPRLEGGYKA-YRRFVIDQLE 121 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHH-cCCCEEEecChHHH-HHHhhhhhhh
Confidence 345999995 56678888899987 48888889998744 3444444444
No 310
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=33.12 E-value=1.5e+02 Score=30.37 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-----CccEEEEec
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-----DVQIVCATI 120 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-----~~~vlvaT~ 120 (242)
.|..+.......++.||.++- ..+..-...+......+++.|||.+...+-.+-.+-+..+ +.++|++|-
T Consensus 409 fl~~l~~~~~~~gpflvvvpl-st~~~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTy 483 (1373)
T KOG0384|consen 409 FLSYLFHSLQIHGPFLVVVPL-STITAWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTY 483 (1373)
T ss_pred HHHHHHHhhhccCCeEEEeeh-hhhHHHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhh
Confidence 333344333345677777763 3333444444433477899999998776666666666655 688999994
No 311
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=32.43 E-value=1e+02 Score=22.09 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCCcEEEEeCchHH---------HHHHHHHHhh--hCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNE---------CVEVSNFLNQ--KCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~---------~~~l~~~L~~--~~~~~~~~~h~~~~ 97 (242)
...++|||+.+-.. +..+.+.|.. ..+.++..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 46789999987664 6667777765 23567999999964
No 312
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=32.42 E-value=56 Score=27.92 Aligned_cols=38 Identities=18% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
+.+++++||.+-..++..+.+|.+. |+ .+..+.||+..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~-Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHE-GFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHc-CCCcEEEecchHHH
Confidence 5678999999988999999999875 77 48889999754
No 313
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=32.14 E-value=3.1e+02 Score=27.34 Aligned_cols=58 Identities=5% Similarity=-0.048 Sum_probs=42.8
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF 122 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 122 (242)
..+..+-|.+.+.--|..=++++.. .+|+++..+.+++++.+|..++. .+|+.+|...
T Consensus 121 l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 121 LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 3677788888876555554444432 25899999999999999988876 7888888653
No 314
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=31.38 E-value=49 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEE-EEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTV-YYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~-~~h~~~ 96 (242)
...+++|+|.+-......+..|... |+... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~-G~~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLA-GFTNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHc-CCccccccCCcH
Confidence 4678999999999999999999885 76665 566664
No 315
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=31.19 E-value=1.3e+02 Score=29.96 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=43.9
Q ss_pred EEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC--CccEEEEec
Q 026168 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG--DVQIVCATI 120 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~vlvaT~ 120 (242)
+||..+-..-.+.....|.. .++.+.+++|+++..+|..+++.+++| .+++|-.|+
T Consensus 307 tvVISPL~SLm~DQv~~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred eEEeccHHHHHHHHHHhhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 45555555555555555533 489999999999999999999999999 889998885
No 316
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.04 E-value=2.3e+02 Score=21.26 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=33.8
Q ss_pred cEEEEeCc-------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHH
Q 026168 63 CGIIYCLS-------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW 108 (242)
Q Consensus 63 ~~iIF~~~-------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f 108 (242)
+++||+.+ -..+..+..+|+.. ++....+.=.+++..+++..+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHh
Confidence 36788876 67899999999874 88777777777777777765543
No 317
>PHA03371 circ protein; Provisional
Probab=30.67 E-value=43 Score=27.08 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=28.8
Q ss_pred cccccccccCccEE-EEeCCCC-------------CHHHHHHHhhccCCCCCCceEEEEe
Q 026168 121 AFGMGIDKPDVRFV-IHNTLSK-------------SIESYYQESGRAGRDNLPSVCIVLY 166 (242)
Q Consensus 121 ~~~~Gid~p~v~~V-i~~~~p~-------------~~~~y~Qr~GR~gR~g~~g~~i~l~ 166 (242)
.++|-||+|+=+-+ |..+.+. +-..|+|.+|||-=.|.--+.+++.
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEE
Confidence 45677888876655 5444433 4457899999996666444444443
No 318
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=30.61 E-value=81 Score=20.69 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCc
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLS 70 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~ 70 (242)
+++++.|.+.|++..++...-+||+|
T Consensus 53 k~~L~~l~~~i~~~~~~~~~r~~VDT 78 (78)
T PF08331_consen 53 KKKLEQLAEWIRELGPDFEYRIFVDT 78 (78)
T ss_pred HHHHHHHHHHHHHHCCCCCeEEeecC
Confidence 56788898988877666678899876
No 319
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=30.19 E-value=2.6e+02 Score=27.22 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=38.6
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCC-----CCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAG-----LAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~-----~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..+..++|.+++..-|...++.+.. .+|.++....++ +.+.+|..+ ....|+++|..
T Consensus 109 L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 109 LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 3566799999999888877776643 358888876654 444444332 24788888864
No 320
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=30.18 E-value=2.2e+02 Score=21.58 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=50.7
Q ss_pred cChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 43 KSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
....+...+.+|+.+.. .+.+++|+|.+...++.|-+.|-.. .-..-.=|+...... .....|+++++.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf-~~~SFlPH~~~~~~~---------~a~~PV~L~~~~ 79 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY-SRKQFIPHGSKLDPQ---------PEKQPIYITDEL 79 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC-CCCCCCCCCCCCCCC---------CCCCCEEEecCC
Confidence 45667777777776543 5678999999999999999999752 222223344321110 124578887543
Q ss_pred ccccccccCccEEEEeCC
Q 026168 122 FGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~ 139 (242)
.+.+ +-++.||.+.
T Consensus 80 --~~p~--~~~vLiNL~~ 93 (154)
T PRK06646 80 --QNPN--NASVLVIISP 93 (154)
T ss_pred --CCCC--CCCEEEECCC
Confidence 1222 4556777764
No 321
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=29.31 E-value=30 Score=22.32 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.0
Q ss_pred CHHHHHHHhh-ccCCC
Q 026168 142 SIESYYQESG-RAGRD 156 (242)
Q Consensus 142 ~~~~y~Qr~G-R~gR~ 156 (242)
...++.||+| +.||+
T Consensus 34 ~~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 34 VNGEVYQRIGKKIGRD 49 (75)
T ss_pred hHHHHHHHHHHHhcch
Confidence 3468899999 77887
No 322
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=28.82 E-value=55 Score=22.23 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHhhhCCCcEE----EEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 78 SNFLNQKCKIKTV----YYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 78 ~~~L~~~~~~~~~----~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
+++|++. |+.+. ..+.+-.+.-+..+++.+++|+++++|.|..
T Consensus 23 a~~L~~~-Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEH-GIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHT-T--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHc-CCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 4556653 76632 2332312333457999999998887777643
No 323
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.86 E-value=80 Score=27.47 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+. +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~-G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERA-GYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc-CCCCEEEecCcHH
Confidence 4567999999988899999999874 775 778899873
No 324
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=27.04 E-value=1.5e+02 Score=24.47 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=42.5
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhCC--CcEEEEcC-CCCHHHHHHHHHHHhCCCccEEEEecc-----cc-ccccccCcc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKCK--IKTVYYHA-GLAARQRVVVQKKWHTGDVQIVCATIA-----FG-MGIDKPDVR 132 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~~--~~~~~~h~-~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~-~Gid~p~v~ 132 (242)
+.+||.|.+--.|..|.+.|+.--+ ..++-+-+ .+.-++....+ ..+.++|.|+|+. +. -.+.+.+..
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 5689999998888889988886211 22322222 23333443333 4578999999962 22 234555666
Q ss_pred EEE
Q 026168 133 FVI 135 (242)
Q Consensus 133 ~Vi 135 (242)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 655
No 325
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=26.89 E-value=3e+02 Score=21.21 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=48.7
Q ss_pred EeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHh
Q 026168 3 LTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLN 82 (242)
Q Consensus 3 ~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~ 82 (242)
-|-|-.|+....+.+.|+.+..-. ....-........-.+..|..++..+.+...-...-++|.+....--....
T Consensus 67 ASRt~~P~~A~~~L~~l~i~~~~~--~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~--- 141 (169)
T PF12689_consen 67 ASRTDEPDWARELLKLLEIDDADG--DGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS--- 141 (169)
T ss_dssp EE--S-HHHHHHHHHHTT-C------------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH---
T ss_pred EECCCChHHHHHHHHhcCCCcccc--ccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeE---
Confidence 455666777777777777761110 001111111112223457888887777543223334777766543222222
Q ss_pred hhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 83 QKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 83 ~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
+ +|..+.....||+.+.=++-++.|++
T Consensus 142 ~-lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 142 K-LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp T-TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred e-cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 1 58888888889999888888888864
No 326
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=26.36 E-value=1e+02 Score=20.57 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
+++|++. |+.+...|..... .+..+.+.+++|+++.+|.|..
T Consensus 23 a~~L~~~-Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREA-GLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHC-CCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 4556653 7765434433322 2245888899999888888764
No 327
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=25.91 E-value=3.2e+02 Score=22.90 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc------CccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP------DVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p------~v~~ 133 (242)
+.-++||++....-.....+.+++. .-.+..+-|...+ + -..+.. ..++.+-+|-..+|-.++ +.+.
T Consensus 61 p~mKaIVv~q~vpGt~~af~kIkek-RpDIl~ia~~~~E-D-p~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAkt 133 (275)
T PF12683_consen 61 PDMKAIVVSQAVPGTAEAFRKIKEK-RPDILLIAGEPHE-D-PEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKT 133 (275)
T ss_dssp TTEEEEEEE-SS---HHHHHHHHHH--TTSEEEESS--S---HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-
T ss_pred CCccEEEEeCCCcchHHHHHHHHhc-CCCeEEEcCCCcC-C-HHHHhh----ccCeEeccchhhccHHHHHHHHHcCCce
Confidence 5668999999998888888888775 4456666666433 2 222322 468999999999999886 5668
Q ss_pred EEEeCCCCCHH
Q 026168 134 VIHNTLSKSIE 144 (242)
Q Consensus 134 Vi~~~~p~~~~ 144 (242)
.|||.+|..++
T Consensus 134 FVh~sfprhms 144 (275)
T PF12683_consen 134 FVHYSFPRHMS 144 (275)
T ss_dssp EEEEEETTGGG
T ss_pred EEEEechhhcc
Confidence 99999998765
No 328
>PHA02653 RNA helicase NPH-II; Provisional
Probab=25.62 E-value=2.2e+02 Score=27.27 Aligned_cols=72 Identities=10% Similarity=-0.095 Sum_probs=44.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCC------CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCK------IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFV 134 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~V 134 (242)
..+++|-++++.-+..++..+.+..+ ..+...+|+.+...... ......++|+|..+.. .++.++.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t-----~~k~~~Ilv~T~~L~l-~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT-----NPKPYGLVFSTHKLTL-NKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc-----ccCCCCEEEEeCcccc-cccccCCEE
Confidence 45799999998888888877765333 34677889887321111 1114589999853211 145667777
Q ss_pred EEeC
Q 026168 135 IHNT 138 (242)
Q Consensus 135 i~~~ 138 (242)
|.-.
T Consensus 296 VIDE 299 (675)
T PHA02653 296 IIDE 299 (675)
T ss_pred Eccc
Confidence 7433
No 329
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=25.62 E-value=2.9e+02 Score=20.73 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=49.9
Q ss_pred HHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccc
Q 026168 50 QIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDK 128 (242)
Q Consensus 50 ~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~ 128 (242)
.+..++.+.. .+.+++|-|.+...++.|-+.|-.- .-..-.=|+.-... ...+. .|+|++.-- -=|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~-~~~sFiPH~~~~e~--------~~~~q-PIli~~~~~--~pn~ 84 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF-SAESFIPHNLAGEP--------PPAGQ-PILIAWPGG--NPNS 84 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc-chhcccCCccCCCC--------CCCCC-CEEEEcCCC--CCCC
Confidence 5666665443 6789999999999999999999762 33333334432211 12233 488887542 2244
Q ss_pred cCccEEEEeCCCC
Q 026168 129 PDVRFVIHNTLSK 141 (242)
Q Consensus 129 p~v~~Vi~~~~p~ 141 (242)
+.++++||.-.+.
T Consensus 85 ~~~~~lInl~d~~ 97 (144)
T COG2927 85 ARVDLLINLADEF 97 (144)
T ss_pred CceeEEEeccccC
Confidence 5677888875443
No 330
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=25.54 E-value=2e+02 Score=24.03 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 73 ECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 73 ~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.++++.+.++++...-+..+|++.+.+ ++.+..|..|...+++.|-
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtH 177 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTH 177 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCC
Confidence 344554555543346678899997653 5678889999999999995
No 331
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.93 E-value=2.1e+02 Score=20.25 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=23.5
Q ss_pred cEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEE
Q 026168 63 CGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116 (242)
Q Consensus 63 ~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 116 (242)
-++||++.....+.+.+.... |.+...++++. +..+.++..+...++++
T Consensus 58 lavv~~~~~~~~~~v~~~~~~--g~~~v~~~~g~---~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAAL--GVKAVWLQPGA---ESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHH--T-SEEEE-TTS-----HHHHHHHHHTT-EEE
T ss_pred EEEEEcCHHHHHHHHHHHHHc--CCCEEEEEcch---HHHHHHHHHHHcCCEEE
Confidence 456666655544444444432 88888888883 33445555555555543
No 332
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=24.88 E-value=3.7e+02 Score=22.95 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...++++.++++.-+..+++.+...++..+..+|++..
T Consensus 28 ~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~ 65 (358)
T TIGR01587 28 KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSS 65 (358)
T ss_pred CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHH
Confidence 45688888999999999999988765667777887643
No 333
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.34 E-value=1.6e+02 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=20.7
Q ss_pred HHHHHHHhhccCCC-CCCceEEEEeecCcHHH
Q 026168 143 IESYYQESGRAGRD-NLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 143 ~~~y~Qr~GR~gR~-g~~g~~i~l~~~~~~~~ 173 (242)
-.+|++|+|++|+. ...|.-+.-....+++.
T Consensus 67 ~~~yl~rlG~~~~s~~~~gTdfS~~~~~dwEe 98 (195)
T PF12761_consen 67 GDSYLSRLGRGGKSYKEKGTDFSATEGTDWEE 98 (195)
T ss_pred hHHHHHHhccccCCCCCCCCCCCCCCCCchHH
Confidence 47899999999984 34455554455555553
No 334
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=24.23 E-value=1.6e+02 Score=26.33 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=38.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh------CCC---cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK------CKI---KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~------~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.++-+||.|+|++-+...++.+..- .|+ +...--|+++-.++..+.. .| +.|+|||.
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~---~G-vHivVATP 310 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR---RG-VHIVVATP 310 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh---cC-eeEEEcCc
Confidence 4556899999999887777655431 132 3444558888877665543 34 78999995
No 335
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=24.16 E-value=52 Score=33.02 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=16.1
Q ss_pred CEEeecCChHHHHHHHHHc
Q 026168 1 MALTATATQSVRLDILKAL 19 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l 19 (242)
|++|||+|+.+++.+....
T Consensus 628 lLmSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 628 LLSSATLPPALVKTLFRAY 646 (1110)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 5899999999888887755
No 336
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=24.06 E-value=5.4e+02 Score=23.23 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 143 IESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 143 ~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
+..++.|+|+.+.+.-.+..++++...|.
T Consensus 285 l~~l~ERag~~~~GSIT~~~tVl~~gdD~ 313 (433)
T PRK07594 285 LPRLLERTGMGEKGSITAFYTVLVEGDDM 313 (433)
T ss_pred hHHHHHhhcCCCCcchheeeeeeecCCCC
Confidence 45667788865322234555566655443
No 337
>PRK13529 malate dehydrogenase; Provisional
Probab=23.88 E-value=1.6e+02 Score=27.49 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=34.5
Q ss_pred EEEEeCchHHHHHHHHHH-hhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 64 GIIYCLSKNECVEVSNFL-NQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L-~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
=|||++|.-++=.-+..+ +.. -+.|-+--....-.+++..|....++++|.||
T Consensus 101 PivYTPTVG~ac~~~s~~~r~p----~Glyis~~d~g~i~~~l~nwp~~~v~viVVTD 154 (563)
T PRK13529 101 PIIYTPTVGEACERFSHIYRRP----RGLFISYDDRDRIEDILQNAPNRDIKLIVVTD 154 (563)
T ss_pred CeeecccHHHHHHHHhhcccCC----CceEeccCCHHHHHHHHhcCCcccceEEEEeC
Confidence 399999987654444433 321 23333334455566777788888999999997
No 338
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=23.79 E-value=61 Score=15.27 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=8.4
Q ss_pred CCCCCcccccCCC
Q 026168 219 GESFDRKACKNGS 231 (242)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (242)
|.+++-.+|.++|
T Consensus 1 ggkpdlrpcyppc 13 (22)
T PF08121_consen 1 GGKPDLRPCYPPC 13 (22)
T ss_pred CCCCccccCCCCc
Confidence 3456667888754
No 339
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=23.06 E-value=1.3e+02 Score=22.66 Aligned_cols=33 Identities=6% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhh
Q 026168 51 IGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQ 83 (242)
Q Consensus 51 l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~ 83 (242)
|.+++++.. .+.++||-.+|+-.+++++++|+.
T Consensus 22 lp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 22 LPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp HHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc
Confidence 444444332 577999999999999999999974
No 340
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=22.82 E-value=4.7e+02 Score=22.15 Aligned_cols=134 Identities=15% Similarity=0.047 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHhcc------cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHH------------
Q 026168 44 SKEALKQIGQLIKDR------FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQ------------ 105 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~------~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~------------ 105 (242)
...|+..|..++... ..+-+++|.+...+..+.+..+|... ++...-+.|.....+....-
T Consensus 94 tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk-~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~ 172 (297)
T PF11496_consen 94 TSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK-KLNYKRYSGESLYDEKHKVPKNGNTESNSSNN 172 (297)
T ss_dssp T-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS-SSEEEESSS--S--S---S-------------
T ss_pred cCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC-CeeEEecCCCCCcCccccCCcccccccccccc
Confidence 345666666555432 13457899999999999999988764 66677777765444433222
Q ss_pred HHH-hC--CCccEEEEecc-cccc----ccccCccEEEEeCCCCCH-HHHHHHhhccCCCCCCceEEEEeecCcHHHHHH
Q 026168 106 KKW-HT--GDVQIVCATIA-FGMG----IDKPDVRFVIHNTLSKSI-ESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176 (242)
Q Consensus 106 ~~f-~~--g~~~vlvaT~~-~~~G----id~p~v~~Vi~~~~p~~~-~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 176 (242)
... .. ....|-++|+. +... .+-.++++||-+|.-.+. ...+|++-..+|.++..-.+-++...-.+-+..
T Consensus 173 ~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nSiEHi~L 252 (297)
T PF11496_consen 173 SKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNSIEHIEL 252 (297)
T ss_dssp ---------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTSHHHHHH
T ss_pred cccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCCHHHHHH
Confidence 000 11 23344455544 3332 223367899999976543 456676655555555666777777776665544
Q ss_pred HH
Q 026168 177 ML 178 (242)
Q Consensus 177 ~~ 178 (242)
-.
T Consensus 253 ~~ 254 (297)
T PF11496_consen 253 CF 254 (297)
T ss_dssp HH
T ss_pred Hc
Confidence 33
No 341
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=4.7e+02 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCc
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLS 70 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~ 70 (242)
+.+.+..+.+.+.+ .+-..|+.+-|
T Consensus 23 D~~a~~~lv~~li~--~Gv~gi~~~Gt 47 (299)
T COG0329 23 DEEALRRLVEFLIA--AGVDGLVVLGT 47 (299)
T ss_pred CHHHHHHHHHHHHH--cCCCEEEECCC
Confidence 34555555554432 23355666654
No 342
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=22.71 E-value=4.8e+02 Score=22.13 Aligned_cols=69 Identities=6% Similarity=0.127 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccE
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 115 (242)
.+.++.+.+.+++. .-.-.+||++-.-.++.+.+.+... -..+.++.-+.+..+-.++.+..+....++
T Consensus 51 ~PVf~tV~EA~~~~-~a~~svI~Vp~~~aadai~EAida~-i~liv~ITEgIP~~D~~~~~~~a~~~g~~i 119 (293)
T COG0074 51 LPVFNTVEEAVKET-GANASVIFVPPPFAADAILEAIDAG-IKLVVIITEGIPVLDMLELKRYAREKGTRL 119 (293)
T ss_pred ccHHHHHHHHHHhh-CCCEEEEecCcHHHHHHHHHHHhCC-CcEEEEEeCCCCHHHHHHHHHHHHhcCCEE
Confidence 45566666666654 5567899999999999999999863 345778888999988888888777555433
No 343
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=22.66 E-value=67 Score=17.11 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=9.2
Q ss_pred CCCccEEEEeccc
Q 026168 110 TGDVQIVCATIAF 122 (242)
Q Consensus 110 ~g~~~vlvaT~~~ 122 (242)
.|.++|.|+|.-.
T Consensus 2 ~g~LqI~ISTnG~ 14 (30)
T PF14824_consen 2 RGPLQIAISTNGK 14 (30)
T ss_dssp -TTEEEEEEESSS
T ss_pred CCCeEEEEECCCC
Confidence 5778888888643
No 344
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=22.38 E-value=6e+02 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHhhccC-CCC-CCceEEEEeecCcH
Q 026168 143 IESYYQESGRAG-RDN-LPSVCIVLYQKKDF 171 (242)
Q Consensus 143 ~~~y~Qr~GR~g-R~g-~~g~~i~l~~~~~~ 171 (242)
+..++.|+|+.- +.| -.+..++++...|.
T Consensus 305 l~~l~ERag~~~~~~GSIT~i~tVlv~~dD~ 335 (455)
T PRK07960 305 LPALVERAGNGISGGGSITAFYTVLTEGDDQ 335 (455)
T ss_pred hhHHHHHHhcCCCCCeeeeeEEEEEEcCCCC
Confidence 556778888852 333 24555556655443
No 345
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.07 E-value=87 Score=24.38 Aligned_cols=83 Identities=11% Similarity=0.212 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCC-------cEEEEcCCCCHHHHHHHHHHHhCC--CccE
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKI-------KTVYYHAGLAARQRVVVQKKWHTG--DVQI 115 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~g--~~~v 115 (242)
..+...|.+.+.+...+...++.+=-+-..-.++++++. +.. .+..||++++.....++....... .-+|
T Consensus 18 ~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~-i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdV 96 (178)
T COG0634 18 KARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRA-IDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDV 96 (178)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHh-cCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeE
Confidence 356677777777666655566666555555556666654 232 356788888776555555544321 2357
Q ss_pred EEEeccccccccc
Q 026168 116 VCATIAFGMGIDK 128 (242)
Q Consensus 116 lvaT~~~~~Gid~ 128 (242)
|+.-|++..|.-+
T Consensus 97 LiVeDIiDsG~TL 109 (178)
T COG0634 97 LIVEDIIDSGLTL 109 (178)
T ss_pred EEEecccccChhH
Confidence 7777777766654
No 346
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=21.81 E-value=5.5e+02 Score=25.64 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=40.8
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
..+..+.|.+.+..-|...++++.. .+|.++..+.+++++.+|... -..+|+.+|.
T Consensus 121 l~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~ 179 (908)
T PRK13107 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAA------YNADITYGTN 179 (908)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhc------CCCCeEEeCC
Confidence 3566689999998877777766653 368999999999987554332 3567888885
No 347
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=21.78 E-value=41 Score=22.21 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=11.7
Q ss_pred CHHHHHHHhh-ccCCC
Q 026168 142 SIESYYQESG-RAGRD 156 (242)
Q Consensus 142 ~~~~y~Qr~G-R~gR~ 156 (242)
+..++.||.| ++||+
T Consensus 34 tn~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 34 TNAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHHhHHhhhH
Confidence 4578999999 67776
No 348
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=21.69 E-value=3.8e+02 Score=22.85 Aligned_cols=81 Identities=16% Similarity=0.351 Sum_probs=51.9
Q ss_pred HHHHHHcCCCCceEEecCCCCCCeEEEEE------ecChhHHHHHHHHHhc---ccCCCcEEEEeCchHHHHHHHHHHhh
Q 026168 13 LDILKALRIPHALVLETSFDRPNLKYEVI------GKSKEALKQIGQLIKD---RFKDQCGIIYCLSKNECVEVSNFLNQ 83 (242)
Q Consensus 13 ~~~~~~l~~~~~~~i~~~~~r~~i~~~v~------~~~~~~~~~l~~~l~~---~~~~~~~iIF~~~~~~~~~l~~~L~~ 83 (242)
+.+..++..++.+++... .+-.+.+- ..+...+..+...+.+ ...+++++.||.---.||+...+|..
T Consensus 118 ~~wn~~l~D~~~vviDtR---N~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~ 194 (308)
T COG1054 118 KDWNELLSDPDVVVIDTR---NDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKASAWMKE 194 (308)
T ss_pred HHHHHHhcCCCeEEEEcC---cceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhHHHHHH
Confidence 456677777777776642 22222221 1233445555444432 23566999999998999999999988
Q ss_pred hCCC-cEEEEcCCCC
Q 026168 84 KCKI-KTVYYHAGLA 97 (242)
Q Consensus 84 ~~~~-~~~~~h~~~~ 97 (242)
+ |+ .|..++||.-
T Consensus 195 ~-GF~eVyhL~GGIl 208 (308)
T COG1054 195 N-GFKEVYHLEGGIL 208 (308)
T ss_pred h-cchhhhcccchHH
Confidence 6 65 4778899853
No 349
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=21.39 E-value=4.9e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 143 IESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 143 ~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
...+..|+|+.+.+.-.+..++++...|.
T Consensus 203 ~~~l~ERag~~~~GSiT~~~~v~~~~dD~ 231 (274)
T cd01133 203 MGALQERITSTKKGSITSVQAVYVPADDL 231 (274)
T ss_pred HHHHHHHhcCCCCcccceEEEEEecCCCC
Confidence 45566677765322234555566655554
No 350
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=20.84 E-value=3.6e+02 Score=21.33 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=11.9
Q ss_pred EEEeCchHHHHHHHHHHhhhCCCc
Q 026168 65 IIYCLSKNECVEVSNFLNQKCKIK 88 (242)
Q Consensus 65 iIF~~~~~~~~~l~~~L~~~~~~~ 88 (242)
+++.........+.+.|++. |..
T Consensus 128 ili~~~~~~~~~l~~~L~~~-G~~ 150 (249)
T PRK05928 128 VLYLRGNGGREVLGDTLEER-GAE 150 (249)
T ss_pred EEEECCCCCHHHHHHHHHHC-CCE
Confidence 33333444556666666653 443
Done!