Query 026168
Match_columns 242
No_of_seqs 212 out of 2218
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 100.0 1.7E-42 5.7E-47 312.2 26.7 230 1-241 178-407 (523)
2 2v1x_A ATP-dependent DNA helic 100.0 1.2E-42 4E-47 316.7 24.8 229 1-241 204-435 (591)
3 2hjv_A ATP-dependent RNA helic 100.0 1.1E-31 3.6E-36 206.6 19.9 148 29-178 3-151 (163)
4 2db3_A ATP-dependent RNA helic 100.0 2.6E-31 9E-36 234.3 21.5 166 1-169 240-407 (434)
5 2i4i_A ATP-dependent RNA helic 100.0 4.7E-31 1.6E-35 230.5 20.4 177 1-178 214-392 (417)
6 2p6n_A ATP-dependent RNA helic 100.0 8.2E-31 2.8E-35 206.7 18.4 151 16-169 9-161 (191)
7 2rb4_A ATP-dependent RNA helic 100.0 1.8E-30 6.2E-35 201.9 19.5 145 32-178 4-156 (175)
8 2jgn_A DBX, DDX3, ATP-dependen 100.0 7.1E-31 2.4E-35 206.1 16.8 148 30-178 14-162 (185)
9 1t5i_A C_terminal domain of A 100.0 1.3E-30 4.5E-35 202.2 17.3 136 34-171 4-140 (172)
10 1s2m_A Putative ATP-dependent 100.0 5.1E-30 1.7E-34 222.9 21.5 177 1-179 198-375 (400)
11 3sqw_A ATP-dependent RNA helic 100.0 1.8E-30 6.2E-35 236.6 19.3 180 1-180 217-409 (579)
12 1fuk_A Eukaryotic initiation f 100.0 2.8E-30 9.5E-35 199.0 17.4 142 35-178 3-146 (165)
13 3eaq_A Heat resistant RNA depe 100.0 3.8E-30 1.3E-34 206.2 18.7 135 43-179 14-148 (212)
14 3i5x_A ATP-dependent RNA helic 100.0 2.5E-30 8.5E-35 234.7 18.9 180 1-180 268-460 (563)
15 2j0s_A ATP-dependent RNA helic 100.0 3.1E-30 1.1E-34 225.1 17.7 175 1-177 214-391 (410)
16 1xti_A Probable ATP-dependent 100.0 1.9E-29 6.5E-34 218.4 20.6 172 1-174 188-362 (391)
17 3pey_A ATP-dependent RNA helic 100.0 3.7E-29 1.3E-33 216.4 21.8 178 1-180 181-367 (395)
18 3fht_A ATP-dependent RNA helic 100.0 2E-29 6.7E-34 219.6 19.9 170 1-172 204-382 (412)
19 3eiq_A Eukaryotic initiation f 100.0 6.5E-30 2.2E-34 223.0 14.7 176 1-178 218-396 (414)
20 1hv8_A Putative ATP-dependent 100.0 3.3E-28 1.1E-32 208.5 22.3 173 1-179 182-355 (367)
21 3i32_A Heat resistant RNA depe 100.0 9.7E-29 3.3E-33 207.3 17.6 136 42-179 10-145 (300)
22 2yjt_D ATP-dependent RNA helic 99.9 8.4E-31 2.9E-35 202.9 0.0 142 33-176 1-144 (170)
23 3fmp_B ATP-dependent RNA helic 100.0 7.7E-30 2.6E-34 227.4 2.3 171 1-173 271-450 (479)
24 4gl2_A Interferon-induced heli 100.0 2.2E-28 7.6E-33 227.1 11.1 159 61-222 400-585 (699)
25 2z0m_A 337AA long hypothetical 99.9 2.8E-27 9.7E-32 200.6 16.5 166 1-176 164-329 (337)
26 1fuu_A Yeast initiation factor 99.9 2.5E-29 8.6E-34 217.7 2.6 175 1-177 197-374 (394)
27 3fho_A ATP-dependent RNA helic 99.9 5.4E-28 1.8E-32 217.1 6.5 168 1-170 295-471 (508)
28 1tf5_A Preprotein translocase 99.9 1.4E-25 4.9E-30 207.0 17.9 163 2-171 372-547 (844)
29 4a4z_A Antiviral helicase SKI2 99.9 1.6E-25 5.3E-30 214.3 18.1 185 48-239 324-576 (997)
30 3jux_A Protein translocase sub 99.9 1.1E-24 3.9E-29 197.6 22.4 162 2-170 414-588 (822)
31 2ykg_A Probable ATP-dependent 99.9 1.9E-25 6.4E-30 207.3 13.6 126 45-173 379-520 (696)
32 3oiy_A Reverse gyrase helicase 99.9 3.7E-25 1.3E-29 193.5 12.8 153 1-167 197-363 (414)
33 2fsf_A Preprotein translocase 99.9 6.4E-24 2.2E-28 195.7 18.0 163 2-171 381-585 (853)
34 2xgj_A ATP-dependent RNA helic 99.9 1.6E-23 5.4E-28 200.5 21.1 120 60-180 342-511 (1010)
35 3l9o_A ATP-dependent RNA helic 99.9 3E-23 1E-27 200.2 22.6 129 50-180 431-609 (1108)
36 2va8_A SSO2462, SKI2-type heli 99.9 2.2E-23 7.4E-28 194.2 20.3 122 46-170 240-409 (715)
37 1wp9_A ATP-dependent RNA helic 99.9 1.6E-23 5.5E-28 184.8 18.2 125 47-173 344-479 (494)
38 2d7d_A Uvrabc system protein B 99.9 3.9E-23 1.3E-27 190.5 21.3 126 45-172 428-559 (661)
39 1c4o_A DNA nucleotide excision 99.9 3.1E-23 1.1E-27 191.2 20.1 127 45-173 422-554 (664)
40 1nkt_A Preprotein translocase 99.9 4.1E-23 1.4E-27 190.8 20.6 163 2-171 400-619 (922)
41 3tbk_A RIG-I helicase domain; 99.9 3.2E-24 1.1E-28 193.3 12.8 126 47-174 372-512 (555)
42 2p6r_A Afuhel308 helicase; pro 99.9 4.1E-23 1.4E-27 192.0 18.4 165 1-173 176-392 (702)
43 1yks_A Genome polyprotein [con 99.9 3E-25 1E-29 195.9 3.7 107 60-172 176-305 (440)
44 2zj8_A DNA helicase, putative 99.9 4.8E-23 1.6E-27 192.0 18.0 165 1-173 173-391 (720)
45 2xau_A PRE-mRNA-splicing facto 99.9 1.8E-24 6.1E-29 202.3 7.6 164 1-171 244-445 (773)
46 4a2p_A RIG-I, retinoic acid in 99.9 1.1E-23 3.8E-28 190.1 12.3 126 45-172 371-511 (556)
47 4a2w_A RIG-I, retinoic acid in 99.9 7E-24 2.4E-28 202.4 11.4 127 44-172 611-752 (936)
48 2eyq_A TRCF, transcription-rep 99.9 1.1E-22 3.7E-27 197.2 17.1 165 1-170 755-923 (1151)
49 2whx_A Serine protease/ntpase/ 99.9 1.4E-23 4.9E-28 191.8 9.2 107 60-172 354-484 (618)
50 2wv9_A Flavivirin protease NS2 99.9 1.7E-23 5.7E-28 192.7 9.6 106 60-171 409-538 (673)
51 2jlq_A Serine protease subunit 99.9 2.2E-23 7.7E-28 184.5 9.4 103 60-168 187-310 (451)
52 1gm5_A RECG; helicase, replica 99.9 3.5E-23 1.2E-27 193.0 9.0 166 1-170 520-698 (780)
53 2z83_A Helicase/nucleoside tri 99.9 1.1E-23 3.8E-28 186.8 5.1 103 61-169 190-313 (459)
54 1gku_B Reverse gyrase, TOP-RG; 99.9 2.5E-23 8.6E-28 200.4 7.6 165 1-177 219-462 (1054)
55 2v6i_A RNA helicase; membrane, 99.9 7.5E-23 2.6E-27 180.1 9.5 108 51-166 163-288 (431)
56 4a2q_A RIG-I, retinoic acid in 99.9 2E-22 6.8E-27 189.8 12.7 126 45-172 612-752 (797)
57 4ddu_A Reverse gyrase; topoiso 99.9 3.1E-22 1E-26 193.1 14.0 127 1-141 254-388 (1104)
58 4f92_B U5 small nuclear ribonu 99.9 8.4E-22 2.9E-26 196.4 17.3 180 1-182 1087-1321(1724)
59 4f92_B U5 small nuclear ribonu 99.9 3E-22 1E-26 199.6 13.9 180 1-182 248-486 (1724)
60 1z5z_A Helicase of the SNF2/RA 99.9 1.5E-21 5.3E-26 161.5 10.5 130 43-172 93-227 (271)
61 3dmq_A RNA polymerase-associat 99.8 4.2E-21 1.4E-25 183.6 13.4 134 44-178 487-625 (968)
62 3o8b_A HCV NS3 protease/helica 99.8 6.2E-22 2.1E-26 180.7 6.9 102 60-172 395-517 (666)
63 2oca_A DAR protein, ATP-depend 99.8 8.9E-22 3.1E-26 176.5 4.4 105 61-167 348-453 (510)
64 3rc3_A ATP-dependent RNA helic 99.8 4.9E-20 1.7E-24 169.5 15.6 117 62-181 321-456 (677)
65 3h1t_A Type I site-specific re 99.8 2.3E-19 7.8E-24 163.7 15.9 116 51-167 429-556 (590)
66 2fwr_A DNA repair protein RAD2 99.8 2.9E-20 9.9E-25 165.1 7.7 121 44-171 333-456 (472)
67 1z63_A Helicase of the SNF2/RA 99.8 1.3E-18 4.5E-23 155.5 12.1 128 45-172 324-456 (500)
68 1z3i_X Similar to RAD54-like; 99.7 3.8E-17 1.3E-21 150.4 16.2 126 46-172 399-531 (644)
69 3mwy_W Chromo domain-containin 99.7 2.2E-16 7.5E-21 148.6 13.6 127 45-172 555-687 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 2.1E-12 7.1E-17 123.8 16.1 106 61-167 537-707 (1038)
71 2ipc_A Preprotein translocase 99.3 1.4E-10 4.7E-15 107.8 18.0 162 2-170 383-699 (997)
72 4a15_A XPD helicase, ATP-depen 98.9 4.4E-08 1.5E-12 89.6 14.5 161 1-169 379-584 (620)
73 2vl7_A XPD; helicase, unknown 98.7 1.1E-07 3.6E-12 85.8 11.1 102 60-168 383-520 (540)
74 3crv_A XPD/RAD3 related DNA he 98.5 8.9E-06 3.1E-10 73.4 17.6 158 1-168 319-530 (551)
75 3hgt_A HDA1 complex subunit 3; 97.7 0.0018 6E-08 54.1 14.8 129 44-178 107-246 (328)
76 1gm5_A RECG; helicase, replica 96.6 0.0092 3.2E-07 55.9 9.6 80 60-139 416-499 (780)
77 3oiy_A Reverse gyrase helicase 95.6 0.056 1.9E-06 46.3 9.2 79 60-138 63-147 (414)
78 2eyq_A TRCF, transcription-rep 95.4 0.1 3.5E-06 51.0 11.0 77 60-136 651-731 (1151)
79 4ddu_A Reverse gyrase; topoiso 95.1 0.081 2.8E-06 51.5 9.4 80 60-139 120-205 (1104)
80 1t6n_A Probable ATP-dependent 94.1 0.35 1.2E-05 37.3 9.4 75 61-138 82-166 (220)
81 1oyw_A RECQ helicase, ATP-depe 92.6 0.51 1.8E-05 41.9 9.0 59 61-120 65-123 (523)
82 1vec_A ATP-dependent RNA helic 92.3 1 3.5E-05 34.0 9.4 73 60-136 70-152 (206)
83 3ber_A Probable ATP-dependent 92.0 1.4 4.7E-05 34.8 10.0 74 60-137 110-193 (249)
84 3fe2_A Probable ATP-dependent 91.8 1.1 3.9E-05 35.0 9.3 74 60-137 101-183 (242)
85 2oxc_A Probable ATP-dependent 91.6 0.95 3.3E-05 35.1 8.6 72 60-136 91-172 (230)
86 2v1x_A ATP-dependent DNA helic 91.4 0.81 2.8E-05 41.3 8.9 60 60-120 83-144 (591)
87 1xti_A Probable ATP-dependent 91.3 1.5 5.3E-05 36.5 10.2 74 60-136 75-158 (391)
88 3bor_A Human initiation factor 90.2 0.57 1.9E-05 36.7 6.0 75 60-137 97-180 (237)
89 1wp9_A ATP-dependent RNA helic 89.5 2.3 7.7E-05 36.3 9.8 72 60-136 51-131 (494)
90 2gxq_A Heat resistant RNA depe 89.3 2.1 7.1E-05 32.2 8.5 74 60-137 71-151 (207)
91 1qde_A EIF4A, translation init 89.1 0.87 3E-05 35.0 6.3 72 60-136 81-161 (224)
92 3iuy_A Probable ATP-dependent 88.2 1.5 5E-05 33.9 7.1 73 60-136 93-173 (228)
93 2pl3_A Probable ATP-dependent 88.2 1.7 5.9E-05 33.6 7.5 72 60-136 96-177 (236)
94 3ly5_A ATP-dependent RNA helic 87.9 3 0.0001 33.1 8.9 73 60-136 125-207 (262)
95 3gk5_A Uncharacterized rhodane 87.1 1.1 3.6E-05 30.6 5.0 46 51-97 45-90 (108)
96 1wrb_A DJVLGB; RNA helicase, D 86.7 3.3 0.00011 32.4 8.4 72 62-137 101-181 (253)
97 1fuu_A Yeast initiation factor 86.6 3.9 0.00013 34.0 9.3 72 60-136 88-168 (394)
98 1s2m_A Putative ATP-dependent 84.9 5.5 0.00019 33.2 9.4 73 60-136 88-169 (400)
99 1gku_B Reverse gyrase, TOP-RG; 84.7 2.5 8.4E-05 41.0 7.8 75 60-136 98-181 (1054)
100 3g5j_A Putative ATP/GTP bindin 84.0 1.4 4.8E-05 30.8 4.5 38 60-98 87-126 (134)
101 2l82_A Designed protein OR32; 83.5 7.9 0.00027 26.4 7.7 54 64-118 5-58 (162)
102 3fmo_B ATP-dependent RNA helic 83.3 2.9 0.0001 34.0 6.8 71 61-138 162-243 (300)
103 2i4i_A ATP-dependent RNA helic 82.6 6.9 0.00024 32.8 9.1 71 62-136 102-181 (417)
104 3eiq_A Eukaryotic initiation f 81.9 3 0.0001 35.0 6.6 74 60-136 107-189 (414)
105 2j0s_A ATP-dependent RNA helic 81.2 9.4 0.00032 31.9 9.4 73 60-136 104-185 (410)
106 3dkp_A Probable ATP-dependent 81.0 2.3 7.7E-05 33.2 5.1 75 60-137 97-182 (245)
107 2fsf_A Preprotein translocase 80.9 7.1 0.00024 36.7 8.9 57 59-121 113-172 (853)
108 2db3_A ATP-dependent RNA helic 80.5 4.7 0.00016 34.5 7.4 72 61-136 129-209 (434)
109 3flh_A Uncharacterized protein 79.9 1.9 6.5E-05 30.0 3.9 46 51-97 61-108 (124)
110 1q0u_A Bstdead; DEAD protein, 79.5 2.1 7.2E-05 32.8 4.4 73 60-136 71-156 (219)
111 1tf5_A Preprotein translocase 79.3 9.4 0.00032 35.9 9.2 56 59-120 122-180 (844)
112 1gmx_A GLPE protein; transfera 79.1 2.8 9.7E-05 28.2 4.5 37 60-97 57-94 (108)
113 3foj_A Uncharacterized protein 77.6 2 7E-05 28.5 3.3 37 60-97 55-91 (100)
114 1hv8_A Putative ATP-dependent 76.5 16 0.00053 29.7 9.2 72 60-136 73-153 (367)
115 1wv9_A Rhodanese homolog TT165 76.4 2.9 0.0001 27.4 3.8 35 62-97 54-88 (94)
116 3tbk_A RIG-I helicase domain; 75.9 5.4 0.00019 34.8 6.5 72 61-136 52-133 (555)
117 3l9o_A ATP-dependent RNA helic 75.5 6.1 0.00021 38.5 7.1 65 60-136 226-296 (1108)
118 3eme_A Rhodanese-like domain p 75.4 2.1 7E-05 28.7 2.9 36 60-96 55-90 (103)
119 2z0m_A 337AA long hypothetical 75.3 8.1 0.00028 31.1 7.1 71 61-136 56-135 (337)
120 2jtq_A Phage shock protein E; 74.7 9 0.00031 24.3 5.9 36 60-97 40-76 (85)
121 4a2q_A RIG-I, retinoic acid in 74.3 9.1 0.00031 35.6 7.9 72 61-136 296-377 (797)
122 3iwh_A Rhodanese-like domain p 73.6 2.4 8.4E-05 28.6 2.9 36 60-96 55-90 (103)
123 4a2p_A RIG-I, retinoic acid in 72.9 7.9 0.00027 33.8 6.8 74 61-138 55-138 (556)
124 1nkt_A Preprotein translocase 72.4 16 0.00055 34.6 8.8 55 60-120 151-208 (922)
125 4gl2_A Interferon-induced heli 71.9 1.8 6.2E-05 39.5 2.5 72 61-136 56-142 (699)
126 2ipc_A Preprotein translocase 71.4 16 0.00054 34.8 8.5 57 59-121 118-177 (997)
127 3b6e_A Interferon-induced heli 71.2 4.2 0.00015 30.6 4.1 57 61-121 82-141 (216)
128 2ykg_A Probable ATP-dependent 70.3 6.5 0.00022 35.7 5.8 73 62-138 62-144 (696)
129 1tq1_A AT5G66040, senescence-a 70.0 4.5 0.00015 28.3 3.7 37 60-97 81-118 (129)
130 3hix_A ALR3790 protein; rhodan 69.6 4.3 0.00015 27.3 3.4 37 60-97 51-88 (106)
131 2k0z_A Uncharacterized protein 64.9 8.5 0.00029 25.9 4.2 37 60-97 55-91 (110)
132 2hhg_A Hypothetical protein RP 64.9 5.4 0.00019 28.0 3.3 37 60-97 85-122 (139)
133 3nhv_A BH2092 protein; alpha-b 64.4 4.9 0.00017 28.8 3.0 37 60-97 71-109 (144)
134 1qxn_A SUD, sulfide dehydrogen 64.3 5.5 0.00019 28.2 3.2 37 60-97 81-118 (137)
135 2fsx_A RV0390, COG0607: rhodan 64.0 7 0.00024 27.9 3.8 37 60-97 79-116 (148)
136 2fz4_A DNA repair protein RAD2 63.7 25 0.00086 27.2 7.3 60 45-120 119-179 (237)
137 2fwr_A DNA repair protein RAD2 63.3 10 0.00035 32.6 5.4 46 61-120 133-179 (472)
138 4a2w_A RIG-I, retinoic acid in 59.9 15 0.00052 34.9 6.3 72 61-136 296-377 (936)
139 2p6r_A Afuhel308 helicase; pro 59.8 19 0.00066 32.8 6.8 70 60-136 67-144 (702)
140 1uar_A Rhodanese; sulfurtransf 59.1 14 0.00047 29.5 5.1 47 50-96 220-269 (285)
141 3o8b_A HCV NS3 protease/helica 59.0 20 0.00069 32.7 6.6 69 60-139 256-327 (666)
142 3d1p_A Putative thiosulfate su 58.4 7.3 0.00025 27.4 3.0 37 60-97 90-127 (139)
143 3pey_A ATP-dependent RNA helic 57.4 28 0.00095 28.5 6.9 70 60-137 74-152 (395)
144 3ilm_A ALR3790 protein; rhodan 56.7 9.3 0.00032 27.2 3.3 36 60-96 55-91 (141)
145 2zj8_A DNA helicase, putative 56.1 9.9 0.00034 34.9 4.2 53 61-120 68-122 (720)
146 2xgj_A ATP-dependent RNA helic 55.5 17 0.0006 34.9 5.9 64 60-135 128-197 (1010)
147 3fht_A ATP-dependent RNA helic 54.5 26 0.00088 29.0 6.3 71 60-137 94-175 (412)
148 1vee_A Proline-rich protein fa 54.1 10 0.00035 26.6 3.1 37 60-97 73-110 (134)
149 3e4c_A Caspase-1; zymogen, inf 50.7 52 0.0018 26.7 7.3 47 62-110 61-118 (302)
150 1c4o_A DNA nucleotide excision 50.7 76 0.0026 28.8 9.1 81 44-126 38-144 (664)
151 2oca_A DAR protein, ATP-depend 50.5 21 0.00072 30.9 5.2 72 60-138 156-233 (510)
152 3sqw_A ATP-dependent RNA helic 50.2 7.4 0.00025 34.6 2.3 73 61-136 95-181 (579)
153 4a4z_A Antiviral helicase SKI2 49.5 32 0.0011 33.0 6.6 50 60-120 81-131 (997)
154 3i5x_A ATP-dependent RNA helic 48.3 11 0.00037 33.2 3.1 72 62-136 147-232 (563)
155 3h11_B Caspase-8; cell death, 47.9 49 0.0017 26.4 6.6 39 70-110 47-85 (271)
156 3aay_A Putative thiosulfate su 47.5 31 0.0011 27.2 5.5 37 60-96 225-262 (277)
157 2h54_A Caspase-1; allosteric s 47.1 64 0.0022 24.0 6.7 47 62-110 44-101 (178)
158 1urh_A 3-mercaptopyruvate sulf 46.3 33 0.0011 27.1 5.4 38 60-98 229-267 (280)
159 3h11_A CAsp8 and FADD-like apo 46.2 13 0.00044 29.9 2.9 50 60-111 42-91 (272)
160 2lci_A Protein OR36; structura 46.1 61 0.0021 21.3 10.4 83 37-120 26-109 (134)
161 2va8_A SSO2462, SKI2-type heli 45.7 31 0.0011 31.5 5.7 54 60-120 74-129 (715)
162 3fho_A ATP-dependent RNA helic 45.6 49 0.0017 28.8 6.8 69 60-136 188-265 (508)
163 3ipz_A Monothiol glutaredoxin- 44.9 66 0.0022 21.3 8.0 46 60-106 16-67 (109)
164 1pyo_A Caspase-2; apoptosis, c 44.7 87 0.003 22.9 7.1 48 61-110 33-94 (167)
165 4f67_A UPF0176 protein LPG2838 44.4 36 0.0012 27.2 5.2 38 60-98 180-218 (265)
166 3p45_A Caspase-6; protease, hu 43.8 98 0.0034 23.0 7.4 50 60-111 43-106 (179)
167 3i2v_A Adenylyltransferase and 43.3 13 0.00044 25.4 2.2 36 62-97 73-114 (127)
168 3hzu_A Thiosulfate sulfurtrans 43.1 16 0.00055 29.8 3.1 47 50-96 248-295 (318)
169 3tg1_B Dual specificity protei 42.7 17 0.00059 26.1 2.9 35 61-96 93-136 (158)
170 3fmp_B ATP-dependent RNA helic 40.4 37 0.0013 29.1 5.2 70 62-138 163-243 (479)
171 1qtn_A Caspase-8; apoptosis, d 40.2 92 0.0031 22.7 6.6 38 71-110 54-91 (164)
172 1e0c_A Rhodanese, sulfurtransf 39.7 16 0.00056 28.8 2.6 36 60-96 222-258 (271)
173 1vp8_A Hypothetical protein AF 39.6 49 0.0017 25.2 4.9 63 60-123 43-109 (201)
174 3zyw_A Glutaredoxin-3; metal b 38.7 86 0.0029 20.9 7.0 46 59-105 13-64 (111)
175 1rif_A DAR protein, DNA helica 38.0 57 0.0019 25.6 5.6 71 61-138 157-233 (282)
176 2eg4_A Probable thiosulfate su 37.7 19 0.00065 27.7 2.6 37 60-97 183-219 (230)
177 2fp3_A Caspase NC; apoptosis, 37.3 70 0.0024 26.2 6.1 48 61-110 61-120 (316)
178 2wlr_A Putative thiosulfate su 35.5 54 0.0018 27.8 5.3 38 60-98 202-240 (423)
179 2nn3_C Caspase-1; cysteine pro 35.4 1.1E+02 0.0036 25.0 6.8 49 61-111 60-121 (310)
180 1urh_A 3-mercaptopyruvate sulf 35.2 35 0.0012 27.0 3.9 37 60-97 85-123 (280)
181 2d7d_A Uvrabc system protein B 35.2 2.5E+02 0.0085 25.4 9.9 104 45-150 43-176 (661)
182 3hjh_A Transcription-repair-co 34.7 2.3E+02 0.0078 24.6 13.1 112 37-150 16-145 (483)
183 1m72_A Caspase-1; caspase, cys 34.6 1.1E+02 0.0037 24.4 6.7 48 62-111 33-93 (272)
184 2dko_A Caspase-3; low barrier 34.0 1.2E+02 0.0041 21.6 6.3 40 70-111 39-78 (146)
185 3aay_A Putative thiosulfate su 34.0 56 0.0019 25.6 4.9 37 60-97 76-114 (277)
186 1t3k_A Arath CDC25, dual-speci 33.7 44 0.0015 23.8 3.9 39 60-98 84-131 (152)
187 3od5_A Caspase-6; caspase doma 33.5 1.2E+02 0.0041 24.2 6.8 48 61-110 21-82 (278)
188 3hzu_A Thiosulfate sulfurtrans 33.3 53 0.0018 26.7 4.8 36 60-96 110-147 (318)
189 2eg4_A Probable thiosulfate su 31.6 86 0.003 23.8 5.5 33 61-95 61-95 (230)
190 3dmn_A Putative DNA helicase; 31.5 1.5E+02 0.005 21.4 11.7 115 8-139 8-123 (174)
191 1e0c_A Rhodanese, sulfurtransf 31.2 61 0.0021 25.3 4.7 37 60-97 80-118 (271)
192 3ics_A Coenzyme A-disulfide re 30.9 31 0.0011 30.6 3.1 37 60-97 540-576 (588)
193 2yan_A Glutaredoxin-3; oxidore 30.8 1.1E+02 0.0038 19.8 7.8 55 61-116 16-76 (105)
194 2wci_A Glutaredoxin-4; redox-a 30.7 1.4E+02 0.0047 20.9 6.4 46 61-107 34-85 (135)
195 1rhs_A Sulfur-substituted rhod 29.2 42 0.0014 26.9 3.4 37 60-97 239-276 (296)
196 3mwy_W Chromo domain-containin 29.2 1.4E+02 0.0049 27.6 7.5 61 59-120 284-353 (800)
197 2j32_A Caspase-3; Pro-caspase3 28.6 1.4E+02 0.0048 23.3 6.4 40 70-111 39-78 (250)
198 1uar_A Rhodanese; sulfurtransf 28.6 62 0.0021 25.5 4.3 37 60-97 78-116 (285)
199 2yv2_A Succinyl-COA synthetase 27.5 1E+02 0.0034 24.8 5.4 52 61-114 72-124 (297)
200 2yv1_A Succinyl-COA ligase [AD 26.6 1E+02 0.0035 24.7 5.3 53 60-114 70-123 (294)
201 3tp9_A Beta-lactamase and rhod 26.1 41 0.0014 29.0 3.0 37 60-97 426-463 (474)
202 3sir_A Caspase; hydrolase; 2.6 25.7 98 0.0033 24.4 4.9 39 71-111 43-81 (259)
203 3ntd_A FAD-dependent pyridine 25.5 48 0.0016 29.0 3.4 37 60-97 523-559 (565)
204 3sxu_A DNA polymerase III subu 25.2 1.1E+02 0.0039 21.8 4.8 78 47-139 24-104 (150)
205 1cmk_I CAMP-dependent protein 24.9 20 0.00069 17.6 0.4 9 149-157 8-16 (26)
206 1nw9_B Caspase 9, apoptosis-re 24.4 1.6E+02 0.0056 23.2 6.1 48 61-110 21-82 (277)
207 1okg_A Possible 3-mercaptopyru 23.9 39 0.0013 28.3 2.3 37 61-98 246-283 (373)
208 3olh_A MST, 3-mercaptopyruvate 23.7 42 0.0014 27.0 2.4 37 60-97 253-290 (302)
209 2wlr_A Putative thiosulfate su 23.6 79 0.0027 26.8 4.3 36 60-96 357-393 (423)
210 1u6t_A SH3 domain-binding glut 23.5 1.3E+02 0.0046 20.7 4.7 40 68-108 13-52 (121)
211 4ehd_A Caspase-3; caspase, apo 23.5 2E+02 0.0067 22.9 6.4 40 70-111 67-106 (277)
212 2ql9_A Caspase-7; cysteine pro 23.4 1.3E+02 0.0045 22.1 4.9 48 62-111 45-106 (173)
213 2ouc_A Dual specificity protei 23.4 36 0.0012 23.4 1.8 35 61-96 83-126 (142)
214 4fn4_A Short chain dehydrogena 22.9 2.7E+02 0.0092 21.7 7.4 61 60-121 30-93 (254)
215 2j6p_A SB(V)-AS(V) reductase; 22.7 1.1E+02 0.0037 21.6 4.3 48 48-98 56-112 (152)
216 1okg_A Possible 3-mercaptopyru 21.9 1.3E+02 0.0046 24.9 5.3 37 60-97 94-132 (373)
217 3hjh_A Transcription-repair-co 21.4 84 0.0029 27.4 4.0 76 48-138 371-446 (483)
218 3dmy_A Protein FDRA; predicted 20.5 1.8E+02 0.0063 25.3 6.0 54 61-116 37-90 (480)
219 1oi7_A Succinyl-COA synthetase 20.1 1.7E+02 0.0057 23.4 5.3 53 60-114 64-117 (288)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.7e-42 Score=312.21 Aligned_cols=230 Identities=40% Similarity=0.695 Sum_probs=203.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
++||||+++.+...+.+.++...+.++..++.++++.+.+... ..+...+.+++... .+.++||||+|++.++.+++.
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~-~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~ 255 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK-FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAAR 255 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC-SSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC-CCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999988888888899999999988763 45667788888754 677899999999999999999
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|... +..+..|||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+++.|.++++|+||+||+||+|++|
T Consensus 256 L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~ 334 (523)
T 1oyw_A 256 LQSK-GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334 (523)
T ss_dssp HHHT-TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCE
T ss_pred HHHC-CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCc
Confidence 9985 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCCCCC
Q 026168 161 VCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNCLKT 240 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C~~~ 240 (242)
.+++++++.+...++.++.... ..+........++.|..|+++ ..|||+.|++||||... . +|+.||+|...
T Consensus 335 ~~~l~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~l~~m~~~~~~-~~crr~~l~~~f~e~~~-~----~c~~cd~c~~~ 406 (523)
T 1oyw_A 335 EAMLFYDPADMAWLRRCLEEKP--QGQLQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ-E----PCGNCDICLDP 406 (523)
T ss_dssp EEEEEECHHHHHHHHHHHHTSC--CSHHHHHHHHHHHHHHHHHTC-SSCHHHHHHHHTTCCCC-S----CCSCBHHHHSC
T ss_pred eEEEEeCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHhc-cccHhhhhHhhcCCCCC-C----CCCCCCCCCCC
Confidence 9999999999999988888722 223334455678999999997 88999999999999753 2 35679999875
Q ss_pred C
Q 026168 241 S 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 407 ~ 407 (523)
T 1oyw_A 407 P 407 (523)
T ss_dssp C
T ss_pred c
Confidence 4
No 2
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.2e-42 Score=316.72 Aligned_cols=229 Identities=44% Similarity=0.778 Sum_probs=201.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecC---hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKS---KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~---~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||+++.+.+.+..+++.+.+..+..++.++++.|.+.... .+++..|.+++.....++++||||+|++.++.+
T Consensus 204 i~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~l 283 (591)
T 2v1x_A 204 IGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQV 283 (591)
T ss_dssp EEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHH
Confidence 58999999999999999999999999999999999999987733 356677888886555678999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|... ++.+..|||+|++.+|..+++.|.+|+.+|||||+++++|||+|+|++||+|++|.++++|+||+||+||+|
T Consensus 284 a~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G 362 (591)
T 2v1x_A 284 TVSLQNL-GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD 362 (591)
T ss_dssp HHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS
T ss_pred HHHHHHC-CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC
Confidence 9999985 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHhcchhchHHHHHhhhCCCCCcccccCCCCCCCCC
Q 026168 158 LPSVCIVLYQKKDFSRVVCMLRNGQGFKSEAFKTAMAQAKKMQQYCEQKAECRRQTLLEHFGESFDRKACKNGSNPCDNC 237 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~~~~~~~~~~Cd~C 237 (242)
++|.|++||++.+...+..++.... .....+..|..|+++...|||+.+++||||..+...|. .+||+|
T Consensus 363 ~~g~~i~l~~~~D~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~---~~Cd~C 431 (591)
T 2v1x_A 363 MKADCILYYGFGDIFRISSMVVMEN--------VGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACN---KMCDNC 431 (591)
T ss_dssp SCEEEEEEECHHHHHHHHHHTTTST--------THHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---CCC---SCBHHH
T ss_pred CCceEEEEEChHHHHHHHHHHhhhh--------hhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccccC---CCCCCC
Confidence 9999999999999988888775431 13445789999999668999999999999986555554 379999
Q ss_pred CCCC
Q 026168 238 LKTS 241 (242)
Q Consensus 238 ~~~~ 241 (242)
...+
T Consensus 432 ~~~~ 435 (591)
T 2v1x_A 432 CKDS 435 (591)
T ss_dssp HCCC
T ss_pred CCCC
Confidence 8753
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-31 Score=206.60 Aligned_cols=148 Identities=20% Similarity=0.321 Sum_probs=133.5
Q ss_pred cCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHH
Q 026168 29 TSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKK 107 (242)
Q Consensus 29 ~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~ 107 (242)
.+..++++.+.++. ...+|+..|.+++... ..+++||||++++.++.+++.|... +..+..+||+|++.+|..+++.
T Consensus 3 ~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~r~~~~~~ 80 (163)
T 2hjv_A 3 AGLTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDL-GYPCDKIHGGMIQEDRFDVMNE 80 (163)
T ss_dssp ---CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHH
Confidence 35677889888766 5678999999988764 6779999999999999999999885 9999999999999999999999
Q ss_pred HhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHH
Q 026168 108 WHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 108 f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|++|.+++|+.+.+...+..+.
T Consensus 81 f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 81 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp HHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred HHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877665544
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.98 E-value=2.6e-31 Score=234.31 Aligned_cols=166 Identities=16% Similarity=0.264 Sum_probs=144.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++||||+|..+.+.+..++..+..+.+.. .....++.+.+.. ....+...|.+++... ..++||||++++.++.++
T Consensus 240 l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 240 LMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLA 317 (434)
T ss_dssp EEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHH
Confidence 58999999999988888877544443332 3445677776655 5567888888888764 345999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|.+. ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+.++|+||+||+||.|+
T Consensus 318 ~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 318 SFLSEK-EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp HHHHHT-TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC
T ss_pred HHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 999985 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecC
Q 026168 159 PSVCIVLYQKK 169 (242)
Q Consensus 159 ~g~~i~l~~~~ 169 (242)
.|.+++|+++.
T Consensus 397 ~G~a~~~~~~~ 407 (434)
T 2db3_A 397 NGRATSFFDPE 407 (434)
T ss_dssp CEEEEEEECTT
T ss_pred CCEEEEEEecc
Confidence 99999999854
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.7e-31 Score=230.50 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=151.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+++|||+|+.+...+..++..+..+.+. .....+++.+.+.. ...++...+.++++.....+++||||++++.++.++
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 293 (417)
T 2i4i_A 214 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLE 293 (417)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 5799999999988888888765444443 24456777776655 556778888888886556788999999999999999
Q ss_pred HHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC
Q 026168 79 NFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL 158 (242)
Q Consensus 79 ~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~ 158 (242)
+.|.+. +..+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+
T Consensus 294 ~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 294 DFLYHE-GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 372 (417)
T ss_dssp HHHHHT-TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--C
T ss_pred HHHHHC-CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCC
Confidence 999885 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCcHHHHHHHH
Q 026168 159 PSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 159 ~g~~i~l~~~~~~~~~~~~~ 178 (242)
+|.+++|+++.+...+..+.
T Consensus 373 ~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 373 LGLATSFFNERNINITKDLL 392 (417)
T ss_dssp CEEEEEEECGGGGGGHHHHH
T ss_pred CceEEEEEccccHHHHHHHH
Confidence 99999999998876554443
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=206.70 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=121.2
Q ss_pred HHHcCCCCceEEec-CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEc
Q 026168 16 LKALRIPHALVLET-SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYH 93 (242)
Q Consensus 16 ~~~l~~~~~~~i~~-~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h 93 (242)
.++|..|..+.+.. ....+++.+.+.. ...+|+..|.+++.. .++++||||++++.++.+++.|... ++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~-g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLK-GVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHH-TCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHc-CCcEEEEe
Confidence 45666665555543 4566788887765 567899999998875 3568999999999999999999885 99999999
Q ss_pred CCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecC
Q 026168 94 AGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 94 ~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|++|.+++|+++.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
No 7
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=201.94 Aligned_cols=145 Identities=16% Similarity=0.271 Sum_probs=126.2
Q ss_pred CCCCeEEEEEe-cC-hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHh
Q 026168 32 DRPNLKYEVIG-KS-KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWH 109 (242)
Q Consensus 32 ~r~~i~~~v~~-~~-~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 109 (242)
..+++.+.++. .. .+|+..|..+++.. ..+++||||++++.++.++..|... +..+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQD-GHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTT-TCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 45678877665 33 34899999988764 6779999999999999999999884 899999999999999999999999
Q ss_pred CCCccEEEEeccccccccccCccEEEEeCCC------CCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHH
Q 026168 110 TGDVQIVCATIAFGMGIDKPDVRFVIHNTLS------KSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 110 ~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p------~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
+|+.+|||||+++++|+|+|++++||+||.| .+..+|+||+||+||.|++|.+++|+++.+...+..+.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHH
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999998876655444
No 8
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=206.09 Aligned_cols=148 Identities=20% Similarity=0.318 Sum_probs=118.4
Q ss_pred CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHH
Q 026168 30 SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW 108 (242)
Q Consensus 30 ~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f 108 (242)
...+++|.+.+.. ...+|+..|.++++......++||||++++.++.++..|... ++.+..+||+|++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-GYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-TCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-CCceEEEeCCCCHHHHHHHHHHH
Confidence 3457889888765 567899999999986546789999999999999999999885 89999999999999999999999
Q ss_pred hCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHH
Q 026168 109 HTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 109 ~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
++|+.+|||||+++++|+|+|++++||+||.|.++.+|+||+||+||.|++|.+++|+++.+...+..+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 162 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 162 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988766544433
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.3e-30 Score=202.25 Aligned_cols=136 Identities=18% Similarity=0.329 Sum_probs=124.4
Q ss_pred CCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC
Q 026168 34 PNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD 112 (242)
Q Consensus 34 ~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 112 (242)
.++.+.++. ...+|+..|.++++.. ..+++||||++++.++.+++.|... +..+..+||+|++.+|..+++.|++|+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQ-NFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 466666555 5678999999999764 6779999999999999999999885 999999999999999999999999999
Q ss_pred ccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 113 VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 113 ~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
.+|||||+++++|+|+|++++||+||.|.++.+|+||+||+||.|++|.+++|+++.+.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 140 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 140 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhH
Confidence 99999999999999999999999999999999999999999999999999999987643
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=5.1e-30 Score=222.93 Aligned_cols=177 Identities=21% Similarity=0.273 Sum_probs=153.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
++||||+|..+.+.+...+..+..+.+......+++.+.+.. ....+...+..++... ..+++||||++++.++.+++
T Consensus 198 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 198 LLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp EEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHH
Confidence 579999999999999888876654444445566677665544 4566777777777654 67799999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|++
T Consensus 277 ~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 355 (400)
T 1s2m_A 277 KITDL-GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL 355 (400)
T ss_dssp HHHHH-TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCC
T ss_pred HHHhc-CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCC
Confidence 99885 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHH
Q 026168 160 SVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~ 179 (242)
|.+++|+++.+...+..+.+
T Consensus 356 g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 356 GLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp EEEEEEECGGGHHHHHHHHH
T ss_pred ceEEEEeccchHHHHHHHHH
Confidence 99999999998877665554
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=1.8e-30 Score=236.61 Aligned_cols=180 Identities=17% Similarity=0.259 Sum_probs=148.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-----CCCCCCeEEEEEe--cChhH----HHHHHHHHhcccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-----SFDRPNLKYEVIG--KSKEA----LKQIGQLIKDRFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-----~~~r~~i~~~v~~--~~~~~----~~~l~~~l~~~~~~~~~iIF~~ 69 (242)
|+||||+++.+.+.+..++..+..+.+.. ......+.+.+.. ....+ +..+...+.......++||||+
T Consensus 217 l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 296 (579)
T 3sqw_A 217 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 296 (579)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECC
Confidence 58999999999888888888776665543 1223455555443 22222 2333444443346779999999
Q ss_pred chHHHHHHHHHHhhhC--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHH
Q 026168 70 SKNECVEVSNFLNQKC--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYY 147 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~ 147 (242)
|++.++.+++.|...+ +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+
T Consensus 297 t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 376 (579)
T 3sqw_A 297 TVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 376 (579)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhh
Confidence 9999999999998742 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
||+||+||.|++|.+++|+.+.+...+..+.+.
T Consensus 377 Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 377 HRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred hhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 999999999999999999999998888777654
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=2.8e-30 Score=199.02 Aligned_cols=142 Identities=21% Similarity=0.333 Sum_probs=122.0
Q ss_pred CeEEEEEe-cChh-HHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC
Q 026168 35 NLKYEVIG-KSKE-ALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD 112 (242)
Q Consensus 35 ~i~~~v~~-~~~~-~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 112 (242)
++.+.++. ...+ |.+.|.+++... ..+++||||++++.++.++..|... +..+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND-KFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 45555443 3444 999999998764 6789999999999999999999885 899999999999999999999999999
Q ss_pred ccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHH
Q 026168 113 VQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 113 ~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
.+|||||+++++|+|+|++++||+||.|.+..+|+||+||+||.|++|.+++++++.+...+..+.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877655443
No 13
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=3.8e-30 Score=206.16 Aligned_cols=135 Identities=24% Similarity=0.367 Sum_probs=124.1
Q ss_pred cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q 026168 43 KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF 122 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 122 (242)
....|++.|..++... .++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRL-GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHH-TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc-CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 5678999999998754 6789999999999999999999885 9999999999999999999999999999999999999
Q ss_pred cccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHH
Q 026168 123 GMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 123 ~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~ 179 (242)
++|+|+|++++||+||.|.+..+|+||+||+||.|++|.+++|+++.+...+..+.+
T Consensus 92 ~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 148 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALER 148 (212)
T ss_dssp TCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHH
T ss_pred hcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877666654
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=2.5e-30 Score=234.73 Aligned_cols=180 Identities=17% Similarity=0.256 Sum_probs=148.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecC-----CCCCCeEEEEEe--cChhH----HHHHHHHHhcccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETS-----FDRPNLKYEVIG--KSKEA----LKQIGQLIKDRFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~-----~~r~~i~~~v~~--~~~~~----~~~l~~~l~~~~~~~~~iIF~~ 69 (242)
|+||||+|+.+.+.+..++..+..+.+... .....+.+.+.. ....+ ...+...+.......++||||+
T Consensus 268 l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 268 LLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp EEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred EEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 589999999998888888877766655421 223455555443 22232 2333344443346779999999
Q ss_pred chHHHHHHHHHHhhhC--CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHH
Q 026168 70 SKNECVEVSNFLNQKC--KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYY 147 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~ 147 (242)
|++.++.+++.|...+ +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+
T Consensus 348 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 427 (563)
T 3i5x_A 348 TVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 427 (563)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHH
T ss_pred cHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhh
Confidence 9999999999998642 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
||+||+||.|++|.+++++.+.+...+..+.+.
T Consensus 428 Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 428 HRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred hhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999888877654
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3.1e-30 Score=225.09 Aligned_cols=175 Identities=17% Similarity=0.301 Sum_probs=149.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+|..+.+.+..++..+..+.+. .....+++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 214 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l 292 (410)
T 2j0s_A 214 VLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWL 292 (410)
T ss_dssp EEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHH
Confidence 5899999998877777776655444333 23455666665544 4455788888888754 567899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|.+. +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|
T Consensus 293 ~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 293 TEKMREA-NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp HHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred HHHHHhC-CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC
Confidence 9999885 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~ 177 (242)
++|.+++|+++.+...+..+
T Consensus 372 ~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 372 RKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp CCEEEEEEEEGGGHHHHHHH
T ss_pred CceEEEEEecHHHHHHHHHH
Confidence 99999999999887765443
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.9e-29 Score=218.45 Aligned_cols=172 Identities=18% Similarity=0.329 Sum_probs=148.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec--CCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET--SFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~--~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+++.+...+..++..+..+.+.. .....++.+.+.. ...++...+..++... ..+++||||++++.++.+
T Consensus 188 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l 266 (391)
T 1xti_A 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIAL 266 (391)
T ss_dssp EEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHH
Confidence 57999999999988888887765554443 2334556555444 5567778888888754 678999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|
T Consensus 267 ~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 267 AQLLVEQ-NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 9999885 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHH
Q 026168 158 LPSVCIVLYQKKDFSRV 174 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~ 174 (242)
++|.+++++++.+...+
T Consensus 346 ~~g~~~~~~~~~~~~~~ 362 (391)
T 1xti_A 346 TKGLAITFVSDENDAKI 362 (391)
T ss_dssp CCCEEEEEECSHHHHHH
T ss_pred CceEEEEEEcccchHHH
Confidence 99999999988755443
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=3.7e-29 Score=216.41 Aligned_cols=178 Identities=19% Similarity=0.277 Sum_probs=150.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+++.+...+...+..+..+.+.. ....+++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 181 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l 259 (395)
T 3pey_A 181 VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM-TIGSSIIFVATKKTANVL 259 (395)
T ss_dssp EEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTT-TSSEEEEECSCHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhc-cCCCEEEEeCCHHHHHHH
Confidence 58999999999888888887765554443 4555666666554 3455666676766543 678999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC------CHHHHHHHhh
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK------SIESYYQESG 151 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~------~~~~y~Qr~G 151 (242)
++.|+.. +..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++|.|. +..+|+||+|
T Consensus 260 ~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 338 (395)
T 3pey_A 260 YGKLKSE-GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIG 338 (395)
T ss_dssp HHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHT
T ss_pred HHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcc
Confidence 9999885 89999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ccCCCCCCceEEEEeecCcHHHHHHHHHc
Q 026168 152 RAGRDNLPSVCIVLYQKKDFSRVVCMLRN 180 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~~~~~~~~~~~ 180 (242)
|+||.|++|.+++++.+.+...+...++.
T Consensus 339 R~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 339 RTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp TSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 99999999999999998766555544444
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=2e-29 Score=219.63 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=146.3
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+++.+...+..++..+..+.+.. .....++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 204 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l 282 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWL 282 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHH
T ss_pred EEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHH
Confidence 58999999999998888887665544443 3455666665544 3456777787877654 677999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC------CCHHHHHHHhh
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS------KSIESYYQESG 151 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p------~~~~~y~Qr~G 151 (242)
++.|... +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|.| .+..+|+||+|
T Consensus 283 ~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 361 (412)
T 3fht_A 283 AAELSKE-GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 361 (412)
T ss_dssp HHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHT
T ss_pred HHHHHhC-CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccC
Confidence 9999985 8999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred ccCCCCCCceEEEEeecCcHH
Q 026168 152 RAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~~~ 172 (242)
|+||.|+.|.+++++++.+..
T Consensus 362 R~gR~g~~g~~~~~~~~~~~~ 382 (412)
T 3fht_A 362 RTGRFGKRGLAVNMVDSKHSM 382 (412)
T ss_dssp TSSCTTCCEEEEEEECSHHHH
T ss_pred cccCCCCCceEEEEEcChhhH
Confidence 999999999999999876533
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=6.5e-30 Score=222.95 Aligned_cols=176 Identities=18% Similarity=0.274 Sum_probs=135.4
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
++||||++..+...+..++..+..+.+.. .....++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 218 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l 296 (414)
T 3eiq_A 218 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL-TITQAVIFINTRRKVDWL 296 (414)
T ss_dssp EEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHH
Confidence 58999999998888887776654443332 3444555555443 4455788888888754 667899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|
T Consensus 297 ~~~l~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 297 TEKMHAR-DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp HHHHHTT-TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC----
T ss_pred HHHHHhc-CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCC
Confidence 9999885 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~~ 178 (242)
++|.+++++++.+...+..+.
T Consensus 376 ~~g~~~~~~~~~~~~~~~~~~ 396 (414)
T 3eiq_A 376 RKGVAINMVTEEDKRTLRDIE 396 (414)
T ss_dssp ---CEEEEECSTHHHHHHHHH
T ss_pred CCceEEEEEcHHHHHHHHHHH
Confidence 999999999998877655444
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=3.3e-28 Score=208.53 Aligned_cols=173 Identities=22% Similarity=0.369 Sum_probs=148.4
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
+++|||++....+.+..+++... .+.. ....++.+.+.. ...+++..+..++.. ...++||||++++.++.+++
T Consensus 182 i~~SAT~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~ 256 (367)
T 1hv8_A 182 LLFSATMPREILNLAKKYMGDYS--FIKA-KINANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELAS 256 (367)
T ss_dssp EEECSSCCHHHHHHHHHHCCSEE--EEEC-CSSSSSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHH
T ss_pred EEEeeccCHHHHHHHHHHcCCCe--EEEe-cCCCCceEEEEEeChHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHH
Confidence 57999999999888888876532 2222 223355554443 566788888888863 57789999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|++
T Consensus 257 ~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 257 MLRDI-GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp HHHHT-TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSC
T ss_pred HHHhc-CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCc
Confidence 99885 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcHHHHHHHHH
Q 026168 160 SVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 160 g~~i~l~~~~~~~~~~~~~~ 179 (242)
|.+++++++.+...+..+.+
T Consensus 336 g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 336 GKAISIINRREYKKLRYIER 355 (367)
T ss_dssp CEEEEEECTTSHHHHHHHHH
T ss_pred cEEEEEEcHHHHHHHHHHHH
Confidence 99999999998877665543
No 21
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=9.7e-29 Score=207.35 Aligned_cols=136 Identities=22% Similarity=0.362 Sum_probs=121.5
Q ss_pred ecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 42 GKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 42 ~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
....+|++.|.++++.. .++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 10 ~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~-g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v 87 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRL-GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87 (300)
T ss_dssp CCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTT-TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST
T ss_pred CCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech
Confidence 36678999999998765 5889999999999999999999874 999999999999999999999999999999999999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHHHHH
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMLR 179 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~~~ 179 (242)
+++|+|+|++++||+||.|.+..+|+||+||+||.|++|.+++|+++.+...+..+.+
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~ 145 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALER 145 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHH
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777666554
No 22
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.92 E-value=8.4e-31 Score=202.93 Aligned_cols=142 Identities=21% Similarity=0.324 Sum_probs=126.5
Q ss_pred CCCeEEEEEe-cC-hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 33 RPNLKYEVIG-KS-KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 33 r~~i~~~v~~-~~-~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
|+++.+.+.. .. ..|+..|..+++.. ...++||||++++.++.+++.|... +..+..+||+|++.+|..+++.|++
T Consensus 1 R~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~ 78 (170)
T 2yjt_D 1 RKKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREA-GINNCYLEGEMVQGKRNEAIKRLTE 78 (170)
Confidence 4566666554 33 67888888888753 5678999999999999999999885 8999999999999999999999999
Q ss_pred CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHHHH
Q 026168 111 GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVC 176 (242)
Q Consensus 111 g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 176 (242)
|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++++.+.+...+..
T Consensus 79 g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 144 (170)
T 2yjt_D 79 GRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 144 (170)
Confidence 999999999999999999999999999999999999999999999999999999998877665443
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=7.7e-30 Score=227.36 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=21.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|+||||++..+......++..+..+.+.. ......+.+.+.. ....+...|..++... ...++||||++++.++.+
T Consensus 271 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l 349 (479)
T 3fmp_B 271 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWL 349 (479)
T ss_dssp EEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHH
Confidence 58999999999988888876655554443 2333444444332 3456666777766543 567899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC------CCHHHHHHHhh
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS------KSIESYYQESG 151 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p------~~~~~y~Qr~G 151 (242)
+..|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+|
T Consensus 350 ~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 350 AAELSKE-GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhC-CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 9999874 8899999999999999999999999999999999999999999999999999999 46789999999
Q ss_pred ccCCCCCCceEEEEeecCcHHH
Q 026168 152 RAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~~~~ 173 (242)
|+||.|++|.+++|+++.+...
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~ 450 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMN 450 (479)
T ss_dssp ----------------------
T ss_pred ccccCCCCceEEEEEcCcchHH
Confidence 9999999999999998776443
No 24
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=227.06 Aligned_cols=159 Identities=16% Similarity=0.227 Sum_probs=110.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh-----CCCcEEEEcCC--------CCHHHHHHHHHHHhCCCccEEEEecccccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK-----CKIKTVYYHAG--------LAARQRVVVQKKWHTGDVQIVCATIAFGMGID 127 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--------~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 127 (242)
+.++||||++++.++.+++.|... .|+.+..+||+ |++.+|.++++.|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999863 26889999999 99999999999999999999999999999999
Q ss_pred ccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH------------HHHHHHHcCCCCChHHHHHHHH-
Q 026168 128 KPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS------------RVVCMLRNGQGFKSEAFKTAMA- 194 (242)
Q Consensus 128 ~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~- 194 (242)
+|++++||+||+|.++.+|+||+||+||.| +.+++++...... .+...+........+.+.....
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 557 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILE 557 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999999999987765 4444444433311 1233333334444455544333
Q ss_pred -HHHHHHHHHhcchhchHHHHHhhhCCCC
Q 026168 195 -QAKKMQQYCEQKAECRRQTLLEHFGESF 222 (242)
Q Consensus 195 -~~~~~~~~~~~~~~c~r~~l~~~f~~~~ 222 (242)
..+.+..+.+. ..|+++....||++..
T Consensus 558 ~q~~~~~~~~~~-~~~~~~~~~~~~~~~~ 585 (699)
T 4gl2_A 558 LQMQSIMEKKMK-TKRNIAKHYKNNPSLI 585 (699)
T ss_dssp HHHHHHHHCCSC-CC----------CCSE
T ss_pred HHHHHHHHHHHH-HhhhHHhhhhcCccee
Confidence 34566666665 6799999999998754
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.8e-27 Score=200.59 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=136.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNF 80 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~ 80 (242)
+++|||+|+...+.+..++..+. .+......+++.+.+....... ......+.. ...+++||||++++.++.+++.
T Consensus 164 ~~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~ 239 (337)
T 2z0m_A 164 GLFSATIPEEIRKVVKDFITNYE--EIEACIGLANVEHKFVHVKDDW-RSKVQALRE-NKDKGVIVFVRTRNRVAKLVRL 239 (337)
T ss_dssp EEEESCCCHHHHHHHHHHSCSCE--EEECSGGGGGEEEEEEECSSSS-HHHHHHHHT-CCCSSEEEECSCHHHHHHHHTT
T ss_pred EEEeCcCCHHHHHHHHHhcCCce--eeecccccCCceEEEEEeChHH-HHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHH
Confidence 36899999999988888876543 3344445566666655422222 222344443 3678899999999999999998
Q ss_pred HhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCc
Q 026168 81 LNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPS 160 (242)
Q Consensus 81 L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g 160 (242)
|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|++|
T Consensus 240 l~-----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g 314 (337)
T 2z0m_A 240 FD-----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKG 314 (337)
T ss_dssp CT-----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCE
T ss_pred hh-----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCc
Confidence 87 3889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCcHHHHHH
Q 026168 161 VCIVLYQKKDFSRVVC 176 (242)
Q Consensus 161 ~~i~l~~~~~~~~~~~ 176 (242)
.+++++. .+...++.
T Consensus 315 ~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 315 EAITFIL-NEYWLEKE 329 (337)
T ss_dssp EEEEEES-SCHHHHHH
T ss_pred eEEEEEe-CcHHHHHH
Confidence 9999998 66554443
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=2.5e-29 Score=217.73 Aligned_cols=175 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
+++|||+++.+.+.+..++..+..+.+.. ....+++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 197 VLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------------------
T ss_pred EEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcC-CCCcEEEEECCHHHHHHH
Confidence 57999999998888888887765554443 3344455444332 2333566666666543 567899999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCC
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDN 157 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g 157 (242)
++.|... +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|
T Consensus 276 ~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 354 (394)
T 1fuu_A 276 TTKLRND-KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHc-CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCC
Confidence 9999885 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeecCcHHHHHHH
Q 026168 158 LPSVCIVLYQKKDFSRVVCM 177 (242)
Q Consensus 158 ~~g~~i~l~~~~~~~~~~~~ 177 (242)
++|.+++++++.+...+..+
T Consensus 355 ~~g~~~~~~~~~~~~~~~~l 374 (394)
T 1fuu_A 355 RKGVAINFVTNEDVGAMREL 374 (394)
T ss_dssp --------------------
T ss_pred CCceEEEEEchhHHHHHHHH
Confidence 99999999999887655443
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.4e-28 Score=217.11 Aligned_cols=168 Identities=18% Similarity=0.260 Sum_probs=118.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEe--cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIG--KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEV 77 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~--~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l 77 (242)
|++|||+++.+......++..+..+.+.. ....+++.+.+.. ....+...+..++... ..+++||||++++.++.+
T Consensus 295 i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l 373 (508)
T 3fho_A 295 VLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEI 373 (508)
T ss_dssp EEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHH
T ss_pred EEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHH
Confidence 58999999988888888877654443332 2334444444333 4566777777777654 678999999999999999
Q ss_pred HHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC------CCHHHHHHHhh
Q 026168 78 SNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS------KSIESYYQESG 151 (242)
Q Consensus 78 ~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p------~~~~~y~Qr~G 151 (242)
+..|.+. +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .++.+|+||+|
T Consensus 374 ~~~L~~~-~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G 452 (508)
T 3fho_A 374 ARRMTAD-GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 452 (508)
T ss_dssp HHHHTTT-TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTS
T ss_pred HHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhh
Confidence 9999884 8999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred ccCCCCCCceEEEEeecCc
Q 026168 152 RAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 152 R~gR~g~~g~~i~l~~~~~ 170 (242)
|+||.|++|.+++|+.+.+
T Consensus 453 RagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 453 RTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp CCC-----CEEEEEECTTT
T ss_pred hcCCCCCCcEEEEEEeChH
Confidence 9999999999999998543
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=1.4e-25 Score=207.01 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=133.1
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+.+..++. .+.+ ++.+|.+.. .++....+|+..|..++... ..++++||||+|++.++.
T Consensus 372 GmTGTa~te~-~e~~~iY~l~-vv~I--Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 372 GMTGTAKTEE-EEFRNIYNMQ-VVTI--PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp EEESCCGGGH-HHHHHHHCCC-EEEC--CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred cCCcccchhH-HHHHHHhCCc-eEEe--cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 5899998774 5566666664 2333 455555432 34446678899988887643 356789999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc--------CccEEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP--------DVRFVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p--------~v~~Vi~~~~p~~~~~y~Q 148 (242)
|+..|... |+++..+||++++.++..+...|+.| +|+|||++++||+|++ ++.+||+|+.|.+...|+|
T Consensus 448 Ls~~L~~~-gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~h 524 (844)
T 1tf5_A 448 ISKLLKNK-GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQ 524 (844)
T ss_dssp HHHHHHTT-TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHH
T ss_pred HHHHHHHC-CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHh
Confidence 99999985 99999999999888887666556555 6999999999999999 7889999999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCcH
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|+||+||.|.+|.+++|++..+.
T Consensus 525 r~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 525 LRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHTTSSGGGCCEEEEEEEETTSS
T ss_pred hcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999999997663
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=1.6e-25 Score=214.26 Aligned_cols=185 Identities=18% Similarity=0.308 Sum_probs=128.2
Q ss_pred HHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCC---------------------------------------c
Q 026168 48 LKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKI---------------------------------------K 88 (242)
Q Consensus 48 ~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 88 (242)
+..+...+... ...++||||++++.++.++..|.. .++ .
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEG-INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTT-CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 45566666543 567899999999999999999865 233 5
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC---------CHHHHHHHhhccCCCC--
Q 026168 89 TVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK---------SIESYYQESGRAGRDN-- 157 (242)
Q Consensus 89 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~---------~~~~y~Qr~GR~gR~g-- 157 (242)
+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+ ..||+++.|. ++.+|+||+|||||.|
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~ 480 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD 480 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC
Confidence 899999999999999999999999999999999999999999 5556555555 9999999999999998
Q ss_pred CCceEEEEe--ecCcHHHHHHHHHcCCCCChHH-------HHHH----HHHHHHHHH-----HHhcchhchHHHHHhhhC
Q 026168 158 LPSVCIVLY--QKKDFSRVVCMLRNGQGFKSEA-------FKTA----MAQAKKMQQ-----YCEQKAECRRQTLLEHFG 219 (242)
Q Consensus 158 ~~g~~i~l~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~-----~~~~~~~c~r~~l~~~f~ 219 (242)
..|.+++++ ...+...+..++......-... .... ....+.|.. +......|.+.....+|+
T Consensus 481 ~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~ 560 (997)
T 4a4z_A 481 STGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQ 560 (997)
T ss_dssp SSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 568888887 3445666666665543321110 0000 111233333 333346789999999998
Q ss_pred CCCCcccccCCCCCCCCCCC
Q 026168 220 ESFDRKACKNGSNPCDNCLK 239 (242)
Q Consensus 220 ~~~~~~~~~~~~~~Cd~C~~ 239 (242)
+...... |..||+|..
T Consensus 561 ~~~~~~~----~~~c~~c~~ 576 (997)
T 4a4z_A 561 EELQTIE----YKSCEICDN 576 (997)
T ss_dssp HHHHC---------------
T ss_pred HHHHHhh----hhccccccc
Confidence 7654433 356999954
No 30
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=1.1e-24 Score=197.61 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=130.7
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE--E--EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK--Y--EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~--~--~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||||+..+. +.+.+..++. .+.+ ++.+|.+. + .+.....+|+..+...+... ..++++||||+|++.++.
T Consensus 414 GMTGTa~te~-~Ef~~iY~l~-vv~I--Ptnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~ 489 (822)
T 3jux_A 414 GMTGTAKTEE-SEFVQVYGME-VVVI--PTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSEL 489 (822)
T ss_dssp EEESSCGGGH-HHHHHHSCCC-EEEC--CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHH
T ss_pred EECCCCchHH-HHHHHHhCCe-EEEE--CCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHH
Confidence 6999998764 5566666654 3333 44444322 2 34556778999999888753 257899999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccccc--------CccEEEEeCCCCCHHHHHH
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKP--------DVRFVIHNTLSKSIESYYQ 148 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p--------~v~~Vi~~~~p~~~~~y~Q 148 (242)
++..|.+. |+++..+||+..+.++..+...++.| .|+|||++++||+|++ +..+||+++.|.+...|+|
T Consensus 490 Ls~~L~~~-Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~q 566 (822)
T 3jux_A 490 LSSMLKKK-GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQ 566 (822)
T ss_dssp HHHHHHTT-TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHH
T ss_pred HHHHHHHC-CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHH
Confidence 99999985 99999999996666665555566555 6999999999999998 5669999999999999999
Q ss_pred HhhccCCCCCCceEEEEeecCc
Q 026168 149 ESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 149 r~GR~gR~g~~g~~i~l~~~~~ 170 (242)
|+||+||.|.+|.+++|++..|
T Consensus 567 riGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 567 LRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHTTSSCSSCCCEEEEEEETTS
T ss_pred hhCccccCCCCeeEEEEechhH
Confidence 9999999999999999999887
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=1.9e-25 Score=207.32 Aligned_cols=126 Identities=18% Similarity=0.317 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhhCC----CcEEEE--------cCCCCHHHHHHHHHHHh
Q 026168 45 KEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQKCK----IKTVYY--------HAGLAARQRVVVQKKWH 109 (242)
Q Consensus 45 ~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~~~----~~~~~~--------h~~~~~~~r~~~~~~f~ 109 (242)
..++..|..++... .++.++||||++++.++.+++.|... + +.+..+ ||+|++++|.++++.|+
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~-~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN-PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHC-TTCCSCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhC-CCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 34666677777654 25678999999999999999999874 5 778878 56999999999999999
Q ss_pred C-CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 110 T-GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 110 ~-g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
+ |+.+|||||+++++|||+|++++||+||+|.++.+|+||+|| ||. ++|.++++++..+...
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred hcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 8 999999999999999999999999999999999999999999 998 7899999998877643
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.92 E-value=3.7e-25 Score=193.49 Aligned_cols=153 Identities=17% Similarity=0.249 Sum_probs=121.6
Q ss_pred CEEeec-CChHHHHHH-HHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTAT-ATQSVRLDI-LKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT-~~~~~~~~~-~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
+++||| .|..+...+ ...+.... .......+++.+.+... ++...|..+++. .+.++||||++++.++.++
T Consensus 197 i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~--~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~ 269 (414)
T 3oiy_A 197 VVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHVRISS--RSKEKLVELLEI--FRDGILIFAQTEEEGKELY 269 (414)
T ss_dssp EESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEEEESS--CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHH
T ss_pred EEEecCCCcchhHHHHHHHhhccCc---Cccccccccchheeecc--CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHH
Confidence 478999 565554333 33433211 11234556777766553 455667777765 3578999999999999999
Q ss_pred HHHhhhCCCcEE-EEcCCCCHHHHHHHHHHHhCCCccEEEE----eccccccccccC-ccEEEEeCCC--CCHHHHHHHh
Q 026168 79 NFLNQKCKIKTV-YYHAGLAARQRVVVQKKWHTGDVQIVCA----TIAFGMGIDKPD-VRFVIHNTLS--KSIESYYQES 150 (242)
Q Consensus 79 ~~L~~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gid~p~-v~~Vi~~~~p--~~~~~y~Qr~ 150 (242)
+.|... ++.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ +++||+||.| .++.+|+||+
T Consensus 270 ~~L~~~-~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~ 342 (414)
T 3oiy_A 270 EYLKRF-KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQAS 342 (414)
T ss_dssp HHHHHT-TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHH
T ss_pred HHHHHc-CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHh
Confidence 999985 89998 99985 444 99999999999999 999999999999 9999999999 9999999999
Q ss_pred hccCCCC----CCceEEEEee
Q 026168 151 GRAGRDN----LPSVCIVLYQ 167 (242)
Q Consensus 151 GR~gR~g----~~g~~i~l~~ 167 (242)
||+||.| ++|.+++++.
T Consensus 343 GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 343 GRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp GGGCCEETTEECCEEEEEECC
T ss_pred CccccCCCCCCcceEEEEEEc
Confidence 9999987 5899999993
No 33
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=6.4e-24 Score=195.74 Aligned_cols=163 Identities=23% Similarity=0.207 Sum_probs=135.0
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+.+..++. .+ .-++.+|.++. .++....+|+..|...+... ..++++||||+|++.++.
T Consensus 381 GmTGTa~te~-~ef~~iY~l~-vv--~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 381 GMTGTADTEA-FEFSSIYKLD-TV--VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp EEECTTCCCH-HHHHHHHCCE-EE--ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred cCCCCchhHH-HHHHHHhCCc-EE--EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 5899997764 4566666553 23 33455555432 34556678999999888643 356789999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC--------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD-------------------------- 130 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~-------------------------- 130 (242)
|+..|.+. |+++..+||.+.+.++..+.+.|+.| .|+|||++++||+|++.
T Consensus 457 Ls~~L~~~-gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 457 VSNELTKA-GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHT-TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHC-CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999985 99999999999888888888888888 69999999999999997
Q ss_pred ------c-----cEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 131 ------V-----RFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 131 ------v-----~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
| .+||+++.|.+...|.||+||+||.|.+|.+++|++..+.
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 5999999999999999999999999999999999997763
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-23 Score=200.54 Aligned_cols=120 Identities=25% Similarity=0.362 Sum_probs=106.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC---------------------------------------cEEEEcCCCCHHH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI---------------------------------------KTVYYHAGLAARQ 100 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~~~h~~~~~~~ 100 (242)
...++||||++++.++.++..|... ++ .+..+||+|++.+
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~e 420 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKL-DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTS-CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHH
Confidence 4568999999999999999988652 22 2889999999999
Q ss_pred HHHHHHHHhCCCccEEEEeccccccccccCccEEEE----eCC----CCCHHHHHHHhhccCCCCC--CceEEEEeecC-
Q 026168 101 RVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH----NTL----SKSIESYYQESGRAGRDNL--PSVCIVLYQKK- 169 (242)
Q Consensus 101 r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~----~~~----p~~~~~y~Qr~GR~gR~g~--~g~~i~l~~~~- 169 (242)
|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+||+||.|. .|.+++++++.
T Consensus 421 R~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 421 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999999999999999999999999999999999999 999 8899999999999999996 59999999876
Q ss_pred cHHHHHHHHHc
Q 026168 170 DFSRVVCMLRN 180 (242)
Q Consensus 170 ~~~~~~~~~~~ 180 (242)
+...+..++..
T Consensus 501 e~~~~~~l~~~ 511 (1010)
T 2xgj_A 501 EPQVAKGMVKG 511 (1010)
T ss_dssp CHHHHHHHHSC
T ss_pred CHHHHHHHHhC
Confidence 55566666544
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-23 Score=200.22 Aligned_cols=129 Identities=24% Similarity=0.368 Sum_probs=104.2
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCC---------------------------------------cEE
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKI---------------------------------------KTV 90 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~ 90 (242)
.++..+... ...++||||++++.|+.++..|... ++ .+.
T Consensus 431 ~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~ 508 (1108)
T 3l9o_A 431 KIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKL-DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 508 (1108)
T ss_dssp HHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTCSH-HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEE
T ss_pred HHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCee
Confidence 344444332 5668999999999999999988642 21 279
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCC--------CCHHHHHHHhhccCCCC--CCc
Q 026168 91 YYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLS--------KSIESYYQESGRAGRDN--LPS 160 (242)
Q Consensus 91 ~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p--------~~~~~y~Qr~GR~gR~g--~~g 160 (242)
.+||+|++.+|..+++.|.+|.++|||||+++++|||+|++++||+++.| .+..+|+||+|||||.| ..|
T Consensus 509 ~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G 588 (1108)
T 3l9o_A 509 IHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRG 588 (1108)
T ss_dssp EECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSE
T ss_pred eecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCce
Confidence 99999999999999999999999999999999999999999999977664 37788999999999999 689
Q ss_pred eEEEEeecC-cHHHHHHHHHc
Q 026168 161 VCIVLYQKK-DFSRVVCMLRN 180 (242)
Q Consensus 161 ~~i~l~~~~-~~~~~~~~~~~ 180 (242)
.+++++++. +...+..++..
T Consensus 589 ~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 589 IVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp EEEEEECCCCCHHHHHHHHHC
T ss_pred EEEEEecCCcCHHHHHHHhcC
Confidence 999998876 34445555544
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.91 E-value=2.2e-23 Score=194.20 Aligned_cols=122 Identities=20% Similarity=0.290 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCC-----------------------------------CcEE
Q 026168 46 EALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCK-----------------------------------IKTV 90 (242)
Q Consensus 46 ~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~-----------------------------------~~~~ 90 (242)
.....+.+.+. .++++||||++++.++.++..|.+... ..+.
T Consensus 240 ~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 240 AIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp HHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 34444545443 568999999999999999999876321 2589
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEE----eC-------CCCCHHHHHHHhhccCCCC--
Q 026168 91 YYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH----NT-------LSKSIESYYQESGRAGRDN-- 157 (242)
Q Consensus 91 ~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~----~~-------~p~~~~~y~Qr~GR~gR~g-- 157 (242)
++||+|++.+|..+++.|.+|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999 98 8999999999999999988
Q ss_pred CCceEEEEeecCc
Q 026168 158 LPSVCIVLYQKKD 170 (242)
Q Consensus 158 ~~g~~i~l~~~~~ 170 (242)
.+|.|+++++..+
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 4799999998776
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.6e-23 Score=184.84 Aligned_cols=125 Identities=21% Similarity=0.345 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcC--------CCCHHHHHHHHHHHhCCCccE
Q 026168 47 ALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHA--------GLAARQRVVVQKKWHTGDVQI 115 (242)
Q Consensus 47 ~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~--------~~~~~~r~~~~~~f~~g~~~v 115 (242)
|+..|.+++... ..+.++||||++++.++.+++.|... ++.+..+|| +++..+|.++++.|++|+.+|
T Consensus 344 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 344 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 455566666543 36789999999999999999999985 999999999 999999999999999999999
Q ss_pred EEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 116 VCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 116 lvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
||||+++++|+|+|++++||++|.|+++..|+||+||+||.|+ |.++.|+.+...+.
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999998 99999999987663
No 38
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.91 E-value=3.9e-23 Score=190.47 Aligned_cols=126 Identities=21% Similarity=0.313 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
......++..+... ..+.++||||+|++.++.+++.|.+. ++++..+||++++.+|..+++.|++|+++|||||++++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~ 506 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh
Confidence 34455555545433 25679999999999999999999985 99999999999999999999999999999999999999
Q ss_pred ccccccCccEEEEeCC-----CCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 124 MGIDKPDVRFVIHNTL-----SKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~-----p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+|+|+|++++||++|. |.+..+|+||+||+||. .+|.+++|+++.+..
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKS 559 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHH
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHH
Confidence 9999999999999997 99999999999999998 789999999887654
No 39
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.91 E-value=3.1e-23 Score=191.22 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 45 KEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 45 ~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
..+...++..+... ..+.++||||+|++.++.+++.|.+. ++.+.++||++++.+|.++++.|++|+++|||||++++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~ 500 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 500 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh
Confidence 34455555545432 25679999999999999999999985 89999999999999999999999999999999999999
Q ss_pred ccccccCccEEEEeCC-----CCCHHHHHHHhhccCCCCCCceEEEEeecCcHHH
Q 026168 124 MGIDKPDVRFVIHNTL-----SKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSR 173 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~-----p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~ 173 (242)
+|+|+|++++||++|. |.+..+|+||+||+||.| +|.+++++++.+...
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 9999999999999998 899999999999999995 899999998876543
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=4.1e-23 Score=190.82 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=133.4
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEE----EEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLKY----EVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~----~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+.+..++. . +.-++.+|.++. .+.....+|+..|...+... ..++++||||+|++.++.
T Consensus 400 GMTGTa~te~-~Ef~~iY~l~-v--v~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~ 475 (922)
T 1nkt_A 400 GMTGTAQTEA-AELHEIYKLG-V--VSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEY 475 (922)
T ss_dssp EEESCCGGGH-HHHHHHHCCE-E--EECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred ccccCchhHH-HHHHHHhCCC-e--EEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 5899997764 4556665554 2 333445554432 34556678999988888643 356789999999999999
Q ss_pred HHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCc-------------------------
Q 026168 77 VSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDV------------------------- 131 (242)
Q Consensus 77 l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v------------------------- 131 (242)
|+..|.+. |+++..+||.+.+.++..+.+.|+.| .|+|||++++||+|++.+
T Consensus 476 Ls~~L~~~-Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (922)
T 1nkt_A 476 LSRQFTKR-RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEY 552 (922)
T ss_dssp HHHHHHHT-TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHH
T ss_pred HHHHHHHC-CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhh
Confidence 99999985 99999999998887777777778777 699999999999999975
Q ss_pred ---------------------------cEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 132 ---------------------------RFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 132 ---------------------------~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
.+||+++.|.+...|.||+||+||.|.+|.++.|++..+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 553 EAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998765
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.91 E-value=3.2e-24 Score=193.29 Aligned_cols=126 Identities=18% Similarity=0.285 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhhC-----------CCcEEEEcCCCCHHHHHHHHHHHhC-C
Q 026168 47 ALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQKC-----------KIKTVYYHAGLAARQRVVVQKKWHT-G 111 (242)
Q Consensus 47 ~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~~-----------~~~~~~~h~~~~~~~r~~~~~~f~~-g 111 (242)
|+..|.+++... ....++||||++++.++.+++.|.... |.....+||+|++.+|.++++.|++ |
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 451 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG 451 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC
Confidence 455555555432 246899999999999999999998631 3345566779999999999999999 9
Q ss_pred CccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHHHH
Q 026168 112 DVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRV 174 (242)
Q Consensus 112 ~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~~~ 174 (242)
+++|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. ++|.+++|+++.+....
T Consensus 452 ~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 452 DNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 99999999999999999999999999999999999999999 999 89999999988766543
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=4.1e-23 Score=191.99 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=126.5
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEE-------ecCh-------hHHHHHHHHHhcccCCCcEEE
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVI-------GKSK-------EALKQIGQLIKDRFKDQCGII 66 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~-------~~~~-------~~~~~l~~~l~~~~~~~~~iI 66 (242)
|+||||++. .+.+.++++.+ .+..+..+-.+...+. .... .....+.+.+. .++++||
T Consensus 176 i~lSATl~n--~~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LV 247 (702)
T 2p6r_A 176 IGLSATAPN--VTEIAEWLDAD---YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA---ENGGVLV 247 (702)
T ss_dssp EEEECCCTT--HHHHHHHTTCE---EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH---TTCCEEE
T ss_pred EEECCCcCC--HHHHHHHhCCC---cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh---cCCCEEE
Confidence 589999986 35677777632 2222222222222211 1111 14445555543 5788999
Q ss_pred EeCchHHHHHHHHHHhhhC-----------------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 67 YCLSKNECVEVSNFLNQKC-----------------------------KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 67 F~~~~~~~~~l~~~L~~~~-----------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
||++++.++.++..|.+.. +..+.++||+|++++|..+++.|++|.++|||
T Consensus 248 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 248 FESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEE
T ss_pred EcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 9999999999999887521 13588999999999999999999999999999
Q ss_pred EeccccccccccCccEEEE----eC---CCCCHHHHHHHhhccCCCC--CCceEEEEeecCcHHH
Q 026168 118 ATIAFGMGIDKPDVRFVIH----NT---LSKSIESYYQESGRAGRDN--LPSVCIVLYQKKDFSR 173 (242)
Q Consensus 118 aT~~~~~Gid~p~v~~Vi~----~~---~p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~ 173 (242)
||+++++|+|+|++++||+ || .|.+..+|.||+|||||.| .+|.|+++++..+...
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 9999999999999999999 66 7899999999999999998 5799999999887543
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=3e-25 Score=195.88 Aligned_cols=107 Identities=17% Similarity=0.085 Sum_probs=89.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEE---
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH--- 136 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~--- 136 (242)
.++++||||++++.++.+++.|+.. +..+..+|| ++|.++++.|++|+++|||||+++++|+|+| +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~-~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKA-GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHc-CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCc
Confidence 3678999999999999999999985 899999999 4688999999999999999999999999999 999986
Q ss_pred ----------------eCCCCCHHHHHHHhhccCCC-CCCceEEEEe---ecCcHH
Q 026168 137 ----------------NTLSKSIESYYQESGRAGRD-NLPSVCIVLY---QKKDFS 172 (242)
Q Consensus 137 ----------------~~~p~~~~~y~Qr~GR~gR~-g~~g~~i~l~---~~~~~~ 172 (242)
++.|.++++|+||+||+||. |++|.|++|+ ++.+..
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~ 305 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAH 305 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhh
Confidence 88999999999999999997 6899999997 455543
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=4.8e-23 Score=192.04 Aligned_cols=165 Identities=22% Similarity=0.306 Sum_probs=126.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-------c-----ChhHHHHHHHHHhcccCCCcEEEEe
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-------K-----SKEALKQIGQLIKDRFKDQCGIIYC 68 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-------~-----~~~~~~~l~~~l~~~~~~~~~iIF~ 68 (242)
|+||||++.. +.+.++++.+ .+..+..+..+...+.. . .......+.+.+. .++++||||
T Consensus 173 i~lSATl~n~--~~~~~~l~~~---~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~ 244 (720)
T 2zj8_A 173 IGLSATIGNP--EELAEWLNAE---LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR---KKKGALIFV 244 (720)
T ss_dssp EEEECCCSCH--HHHHHHTTEE---EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH---TTCCEEEEC
T ss_pred EEEcCCcCCH--HHHHHHhCCc---ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh---CCCCEEEEe
Confidence 5899999863 5677777532 22222222222221110 1 2334444555443 568899999
Q ss_pred CchHHHHHHHHHHhhhC--------------------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCccEE
Q 026168 69 LSKNECVEVSNFLNQKC--------------------------------KIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116 (242)
Q Consensus 69 ~~~~~~~~l~~~L~~~~--------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 116 (242)
++++.++.++..|.+.. ...+.++||+|++.+|..+++.|++|.++||
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 324 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 99999999999887521 1248999999999999999999999999999
Q ss_pred EEeccccccccccCccEEEE----eC----CCCCHHHHHHHhhccCCCC--CCceEEEEeecCcHHH
Q 026168 117 CATIAFGMGIDKPDVRFVIH----NT----LSKSIESYYQESGRAGRDN--LPSVCIVLYQKKDFSR 173 (242)
Q Consensus 117 vaT~~~~~Gid~p~v~~Vi~----~~----~p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~ 173 (242)
|||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+...
T Consensus 325 vaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 325 VATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp EECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred EECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999999999999999998 66 5899999999999999998 5799999999888543
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=1.8e-24 Score=202.31 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=127.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEe-cChhHH----HHHHHHHhcccCCCcEEEEeCchHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLETSFDRPNLKYEVIG-KSKEAL----KQIGQLIKDRFKDQCGIIYCLSKNECV 75 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~-~~~~~~----~~l~~~l~~~~~~~~~iIF~~~~~~~~ 75 (242)
|+||||++.. .+.++++....+.+... ...+.+.+.. ...+.. ..+..+... ...+++||||++++.++
T Consensus 244 Il~SAT~~~~---~l~~~~~~~~vi~v~gr--~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 244 IIMSATLDAE---KFQRYFNDAPLLAVPGR--TYPVELYYTPEFQRDYLDSAIRTVLQIHAT-EEAGDILLFLTGEDEIE 317 (773)
T ss_dssp EEEESCSCCH---HHHHHTTSCCEEECCCC--CCCEEEECCSSCCSCHHHHHHHHHHHHHHH-SCSCEEEEECSCHHHHH
T ss_pred EEEeccccHH---HHHHHhcCCCcccccCc--ccceEEEEecCCchhHHHHHHHHHHHHHHh-cCCCCEEEECCCHHHHH
Confidence 5799999764 55667654333322222 2334444333 222222 333333332 25789999999999999
Q ss_pred HHHHHHhhh----------CCCcEEEEcCCCCHHHHHHHHHHHh-----CCCccEEEEeccccccccccCccEEEEeCC-
Q 026168 76 EVSNFLNQK----------CKIKTVYYHAGLAARQRVVVQKKWH-----TGDVQIVCATIAFGMGIDKPDVRFVIHNTL- 139 (242)
Q Consensus 76 ~l~~~L~~~----------~~~~~~~~h~~~~~~~r~~~~~~f~-----~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~- 139 (242)
.+++.|.+. .++.+..+||+|++++|.++++.|. +|..+|||||+++++|||+|+|++||++|.
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 999999741 3678999999999999999999999 999999999999999999999999999888
Q ss_pred -----------------CCCHHHHHHHhhccCCCCCCceEEEEeecCcH
Q 026168 140 -----------------SKSIESYYQESGRAGRDNLPSVCIVLYQKKDF 171 (242)
Q Consensus 140 -----------------p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~ 171 (242)
|.+..+|+||+|||||. .+|.|+.|+++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999999 89999999987665
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=1.1e-23 Score=190.07 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhh-----------CCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 45 KEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQK-----------CKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 45 ~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
..|+..|.+++.+. ..+.++||||++++.++.+++.|... .|.....+||+|++.+|.++++.|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 56778888888643 35789999999999999999999763 14455677889999999999999999
Q ss_pred -CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 111 -GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 111 -g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
|+++|||||+++++|+|+|++++||+||.|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 889999999887664
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.90 E-value=7e-24 Score=202.36 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhh-----------CCCcEEEEcCCCCHHHHHHHHHHHh
Q 026168 44 SKEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQK-----------CKIKTVYYHAGLAARQRVVVQKKWH 109 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~ 109 (242)
...|+..|.+++... ..+.++||||++++.++.++++|... .|.....+||+|++.+|.++++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 356778888888753 35689999999999999999999874 1445667799999999999999999
Q ss_pred C-CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 110 T-GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 110 ~-g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
+ |+++|||||+++++|||+|++++||+||.|+++..|+||+|| ||. ++|.+++|++..+..
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9 999999999999999999999999999999999999999999 999 789999999876554
No 48
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=1.1e-22 Score=197.16 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=132.1
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecChh-HHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSKE-ALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~~-~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
|+||||+++........ +......+.. +..+..+...+...... ....+.. ....+++++|||++++.++.++
T Consensus 755 l~lSATp~p~~l~~~~~--~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~---~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 755 LTLTATPIPRTLNMAMS--GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR---EILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEEESSCCCHHHHHHHT--TTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHH---HHTTTCEEEEECCCSSCHHHHH
T ss_pred EEEcCCCChhhHHHHHh--cCCCceEEecCCCCccccEEEEecCCHHHHHHHHHH---HHhcCCeEEEEECCHHHHHHHH
Confidence 57999998876554443 3333444443 34556677666653332 2233333 3335789999999999999999
Q ss_pred HHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC-CCCHHHHHHHhhccCCC
Q 026168 79 NFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL-SKSIESYYQESGRAGRD 156 (242)
Q Consensus 79 ~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~-p~~~~~y~Qr~GR~gR~ 156 (242)
+.|++.+ +..+..+||+|++.+|.++++.|.+|+++|||||+++++|+|+|++++||.++. +.++.+|+||+||+||.
T Consensus 830 ~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 830 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp HHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred HHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 9998754 678999999999999999999999999999999999999999999999999988 57999999999999999
Q ss_pred CCCceEEEEeecCc
Q 026168 157 NLPSVCIVLYQKKD 170 (242)
Q Consensus 157 g~~g~~i~l~~~~~ 170 (242)
|+.|.|++++.+.+
T Consensus 910 g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 910 HHQAYAWLLTPHPK 923 (1151)
T ss_dssp TBCEEEEEEECCGG
T ss_pred CCceEEEEEECCcc
Confidence 99999999987643
No 49
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.89 E-value=1.4e-23 Score=191.85 Aligned_cols=107 Identities=18% Similarity=0.107 Sum_probs=97.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEE-----
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFV----- 134 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~V----- 134 (242)
..+++||||+|++.++.+++.|.+. +..+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKS-GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHT-TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHc-CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcc
Confidence 3678999999999999999999985 9999999984 688899999999999999999999999997 8888
Q ss_pred ---------------EEeCCCCCHHHHHHHhhccCCCC-CCceEEEEee---cCcHH
Q 026168 135 ---------------IHNTLSKSIESYYQESGRAGRDN-LPSVCIVLYQ---KKDFS 172 (242)
Q Consensus 135 ---------------i~~~~p~~~~~y~Qr~GR~gR~g-~~g~~i~l~~---~~~~~ 172 (242)
|+++.|.+.++|+||+||+||.| ++|.+++|++ +.+..
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~ 484 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDED 484 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTT
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHH
Confidence 77888999999999999999996 4899999997 55544
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=1.7e-23 Score=192.75 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=97.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEE---
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH--- 136 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~--- 136 (242)
..+++||||++++.++.+++.|.+. +..+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 4778999999999999999999985 9999999994 799999999999999999999999999999 999998
Q ss_pred -----------------eCCCCCHHHHHHHhhccCCC-CCCceEEEEe---ecCcH
Q 026168 137 -----------------NTLSKSIESYYQESGRAGRD-NLPSVCIVLY---QKKDF 171 (242)
Q Consensus 137 -----------------~~~p~~~~~y~Qr~GR~gR~-g~~g~~i~l~---~~~~~ 171 (242)
|+.|.+.++|+||+||+||. |++|.|++|+ ++.+.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 56899999999999999999 7899999996 45553
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.89 E-value=2.2e-23 Score=184.47 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeC-
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNT- 138 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~- 138 (242)
..+++||||++++.++.+++.|... +..+..+||.+ +.++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCC
Confidence 3568999999999999999999885 89999999975 457899999999999999999999999999 9999999
Q ss_pred -------------------CCCCHHHHHHHhhccCCCCC-CceEEEEeec
Q 026168 139 -------------------LSKSIESYYQESGRAGRDNL-PSVCIVLYQK 168 (242)
Q Consensus 139 -------------------~p~~~~~y~Qr~GR~gR~g~-~g~~i~l~~~ 168 (242)
.|.+.++|+||+||+||.|. +|.+++|+..
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888743
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=3.5e-23 Score=192.98 Aligned_cols=166 Identities=16% Similarity=0.279 Sum_probs=127.0
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEec-CCCCCCeEEEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCch-------
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLET-SFDRPNLKYEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSK------- 71 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~~-~~~r~~i~~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~------- 71 (242)
++||||+++.... ....+.....++.. +..+..+...+... .....+...+... ..+.+++|||++.
T Consensus 520 L~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~--~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 520 LVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPM--DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp EEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCS--STHHHHHHHHHHHTTTSCCBCCBCCCC-------
T ss_pred EEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEecc--chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh
Confidence 5899998877543 23444444444443 44566666554432 2233444444332 2567899999965
Q ss_pred -HHHHHHHHHHhh-hC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCC-CHHHHH
Q 026168 72 -NECVEVSNFLNQ-KC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSK-SIESYY 147 (242)
Q Consensus 72 -~~~~~l~~~L~~-~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~-~~~~y~ 147 (242)
+.++.+++.|.+ .+ +..+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|. +.+.|.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 457888888887 33 67899999999999999999999999999999999999999999999999999996 799999
Q ss_pred HHhhccCCCCCCceEEEEeecCc
Q 026168 148 QESGRAGRDNLPSVCIVLYQKKD 170 (242)
Q Consensus 148 Qr~GR~gR~g~~g~~i~l~~~~~ 170 (242)
||+||+||.|++|.|++++++.+
T Consensus 676 Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 676 QLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp HHHHTSCCSSTTCEEECCCCSCC
T ss_pred HHhcccCcCCCCCEEEEEECCCC
Confidence 99999999999999999998433
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=1.1e-23 Score=186.80 Aligned_cols=103 Identities=19% Similarity=0.089 Sum_probs=93.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEE----
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIH---- 136 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~---- 136 (242)
.+++||||++++.++.+++.|+.. +..+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~ 263 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKS 263 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcc
Confidence 678999999999999999999985 9999999995 6788999999999999999999999999999 99999
Q ss_pred ----------------eCCCCCHHHHHHHhhccCCCCC-CceEEEEeecC
Q 026168 137 ----------------NTLSKSIESYYQESGRAGRDNL-PSVCIVLYQKK 169 (242)
Q Consensus 137 ----------------~~~p~~~~~y~Qr~GR~gR~g~-~g~~i~l~~~~ 169 (242)
|+.|.+.++|+||+||+||.|. +|.+++|+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 264 VKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6799999999999999999997 99999999875
No 54
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=2.5e-23 Score=200.35 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=120.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHH
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSN 79 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~ 79 (242)
++||||+++. ......++..+..+.+. .....+++.+.+.. .++...|..+++.. ++++||||++++.++.+++
T Consensus 219 ~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~--~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~ 293 (1054)
T 1gku_B 219 CLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN--DESISTLSSILEKL--GTGGIIYARTGEEAEEIYE 293 (1054)
T ss_dssp EEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES--CCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHH
T ss_pred EEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec--hhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHH
Confidence 4799999987 42222332222112222 23445677777663 45556677777643 5789999999999999999
Q ss_pred HHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEE----eccccccccccCc-cEEEEeCCC--------------
Q 026168 80 FLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA----TIAFGMGIDKPDV-RFVIHNTLS-------------- 140 (242)
Q Consensus 80 ~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gid~p~v-~~Vi~~~~p-------------- 140 (242)
.|... +.+..+||++. .+++.|++|+.+|||| |+++++|+|+|+| ++||++|+|
T Consensus 294 ~L~~~--~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~ 366 (1054)
T 1gku_B 294 SLKNK--FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSP 366 (1054)
T ss_dssp TTTTS--SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCH
T ss_pred HHhhc--cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChH
Confidence 99874 88999999983 6889999999999999 8999999999995 999999999
Q ss_pred ---------------------------------------------------------CCHHHHHHHhhccCCCCCCc--e
Q 026168 141 ---------------------------------------------------------KSIESYYQESGRAGRDNLPS--V 161 (242)
Q Consensus 141 ---------------------------------------------------------~~~~~y~Qr~GR~gR~g~~g--~ 161 (242)
.+..+|+||+||+||.|..| .
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~ 446 (1054)
T 1gku_B 367 QMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTK 446 (1054)
T ss_dssp HHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCce
Confidence 78999999999999987665 4
Q ss_pred EEEEeecCcHHHHHHH
Q 026168 162 CIVLYQKKDFSRVVCM 177 (242)
Q Consensus 162 ~i~l~~~~~~~~~~~~ 177 (242)
++.++...+...+..+
T Consensus 447 g~~~~~~~d~~~~~~l 462 (1054)
T 1gku_B 447 GASFLLEDDSELLSAF 462 (1054)
T ss_dssp EEEEEECSCHHHHHHH
T ss_pred EEEEEEecCHHHHHHH
Confidence 6777766666554433
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.88 E-value=7.5e-23 Score=180.11 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=92.8
Q ss_pred HHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccC
Q 026168 51 IGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD 130 (242)
Q Consensus 51 l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~ 130 (242)
+..++.+ ..+++||||++++.++.+++.|.+. +..+..+||+ +|.++++.|++|+++|||||+++++|+|+|
T Consensus 163 ~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip- 234 (431)
T 2v6i_A 163 GYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKA-GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK- 234 (431)
T ss_dssp CCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHT-TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-
T ss_pred HHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHc-CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-
Confidence 3444544 3568999999999999999999985 8999999997 578899999999999999999999999999
Q ss_pred ccE-----------------EEEeCCCCCHHHHHHHhhccCCCCCC-ceEEEEe
Q 026168 131 VRF-----------------VIHNTLSKSIESYYQESGRAGRDNLP-SVCIVLY 166 (242)
Q Consensus 131 v~~-----------------Vi~~~~p~~~~~y~Qr~GR~gR~g~~-g~~i~l~ 166 (242)
+.+ ||+++.|.++++|+||+||+||.|.. |.++++.
T Consensus 235 ~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 235 ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 544 68889999999999999999999854 4555554
No 56
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.88 E-value=2e-22 Score=189.77 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcc---cCCCcEEEEeCchHHHHHHHHHHhhh-----------CCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 45 KEALKQIGQLIKDR---FKDQCGIIYCLSKNECVEVSNFLNQK-----------CKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 45 ~~~~~~l~~~l~~~---~~~~~~iIF~~~~~~~~~l~~~L~~~-----------~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
..|+..|..++... ..+.++||||++++.++.++++|... .|.....+||+|++.+|..+++.|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 56777788877642 35689999999999999999999763 24566778999999999999999999
Q ss_pred -CCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 111 -GDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 111 -g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
|.++|||||+++++|||+|++++||+||.|+++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 899999999887654
No 57
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=3.1e-22 Score=193.13 Aligned_cols=127 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred CEEeec-CChHHHHHH-HHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHH
Q 026168 1 MALTAT-ATQSVRLDI-LKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVS 78 (242)
Q Consensus 1 i~~SAT-~~~~~~~~~-~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~ 78 (242)
++|||| .|..+...+ ...+.. .+.......+++.+.+... ++...|..++.. .++++||||++++.++.++
T Consensus 254 ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~~~~--~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 254 VVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVRISS--RSKEKLVELLEI--FRDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp EEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEEESC--CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEEEec--CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHH
Confidence 589999 555554333 333331 1112345677887777653 456667777765 3488999999999999999
Q ss_pred HHHhhhCCCcEE-EEcCCCCHHHHHHHHHHHhCCCccEEEE----eccccccccccC-ccEEEEeCCCC
Q 026168 79 NFLNQKCKIKTV-YYHAGLAARQRVVVQKKWHTGDVQIVCA----TIAFGMGIDKPD-VRFVIHNTLSK 141 (242)
Q Consensus 79 ~~L~~~~~~~~~-~~h~~~~~~~r~~~~~~f~~g~~~vlva----T~~~~~Gid~p~-v~~Vi~~~~p~ 141 (242)
..|... ++.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ |++|||||+|.
T Consensus 327 ~~L~~~-g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 327 EYLKRF-KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHT-TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHhC-CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999985 99998 99992 555 99999999999999 999999999999 99999999998
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.88 E-value=8.4e-22 Score=196.35 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=137.7
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe-cCCCCC-CeEEEEEe-cC---hhH----HHHHHHHHhcccCCCcEEEEeCc
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE-TSFDRP-NLKYEVIG-KS---KEA----LKQIGQLIKDRFKDQCGIIYCLS 70 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~-~~~~r~-~i~~~v~~-~~---~~~----~~~l~~~l~~~~~~~~~iIF~~~ 70 (242)
|+||||++.. +++.++|+......+. .+..|| .+...+.. .. ..+ ...+...+......+++||||+|
T Consensus 1087 I~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~s 1164 (1724)
T 4f92_B 1087 VALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPS 1164 (1724)
T ss_dssp EEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESS
T ss_pred EEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCC
Confidence 5899999865 6778888765443332 333343 45555443 11 111 22334445555577899999999
Q ss_pred hHHHHHHHHHHhhh---------------------------------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEE
Q 026168 71 KNECVEVSNFLNQK---------------------------------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC 117 (242)
Q Consensus 71 ~~~~~~l~~~L~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 117 (242)
++.++.++..|... +...+++|||+|++.+|..+++.|++|.++|||
T Consensus 1165 R~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLv 1244 (1724)
T 4f92_B 1165 RKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1244 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEE
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 99999888766421 124589999999999999999999999999999
Q ss_pred EeccccccccccCccEEEE----------eCCCCCHHHHHHHhhccCCCCC--CceEEEEeecCcHHHHHHHHHcCC
Q 026168 118 ATIAFGMGIDKPDVRFVIH----------NTLSKSIESYYQESGRAGRDNL--PSVCIVLYQKKDFSRVVCMLRNGQ 182 (242)
Q Consensus 118 aT~~~~~Gid~p~v~~Vi~----------~~~p~~~~~y~Qr~GR~gR~g~--~g~~i~l~~~~~~~~~~~~~~~~~ 182 (242)
||+++++|+|+|...+||. ...|.++.+|+||+|||||.|. .|.+++++.+.+...++.++..+.
T Consensus 1245 aT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1245 ASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp EEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCB
T ss_pred EChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCC
Confidence 9999999999999999983 3346799999999999999986 799999999999998888886643
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.87 E-value=3e-22 Score=199.57 Aligned_cols=180 Identities=19% Similarity=0.290 Sum_probs=135.8
Q ss_pred CEEeecCChHHHHHHHHHcCCCCc--e-EEecCCCCCCeEEEEEe-cCh---hHHH----HHHHHHhcccCCCcEEEEeC
Q 026168 1 MALTATATQSVRLDILKALRIPHA--L-VLETSFDRPNLKYEVIG-KSK---EALK----QIGQLIKDRFKDQCGIIYCL 69 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~--~-~i~~~~~r~~i~~~v~~-~~~---~~~~----~l~~~l~~~~~~~~~iIF~~ 69 (242)
|+||||+|.. +++.++|+.... . .+..+..+-.+.+.++. ... .... .+...+.+...+.++||||+
T Consensus 248 I~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~ 325 (1724)
T 4f92_B 248 IGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVH 325 (1724)
T ss_dssp EEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECS
T ss_pred EEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 5899999864 577888875422 2 33333333456655443 111 1122 22333444445678999999
Q ss_pred chHHHHHHHHHHhhh------------------------------------CCCcEEEEcCCCCHHHHHHHHHHHhCCCc
Q 026168 70 SKNECVEVSNFLNQK------------------------------------CKIKTVYYHAGLAARQRVVVQKKWHTGDV 113 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~------------------------------------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 113 (242)
|++.|+.++..|.+. +...++++||+|++.+|..+++.|++|.+
T Consensus 326 sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i 405 (1724)
T 4f92_B 326 SRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHI 405 (1724)
T ss_dssp STTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCC
Confidence 999999988877531 12458999999999999999999999999
Q ss_pred cEEEEeccccccccccCccEEEE----eC------CCCCHHHHHHHhhccCCCC--CCceEEEEeecCcHHHHHHHHHcC
Q 026168 114 QIVCATIAFGMGIDKPDVRFVIH----NT------LSKSIESYYQESGRAGRDN--LPSVCIVLYQKKDFSRVVCMLRNG 181 (242)
Q Consensus 114 ~vlvaT~~~~~Gid~p~v~~Vi~----~~------~p~~~~~y~Qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~~~~~~ 181 (242)
+|||||+++++|||+|.+++||. |+ .|.++.+|.||+|||||.| ..|.++++.++.+...+..++...
T Consensus 406 ~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 406 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp CEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred eEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 99999999999999999999985 33 4568999999999999987 479999999999988888877654
Q ss_pred C
Q 026168 182 Q 182 (242)
Q Consensus 182 ~ 182 (242)
.
T Consensus 486 ~ 486 (1724)
T 4f92_B 486 L 486 (1724)
T ss_dssp S
T ss_pred C
Confidence 3
No 60
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.86 E-value=1.5e-21 Score=161.53 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=100.4
Q ss_pred cChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-Ccc-EEEEe
Q 026168 43 KSKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQ-IVCAT 119 (242)
Q Consensus 43 ~~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT 119 (242)
....|+..|.+++.... .+.++||||+++..++.+...|....|+.+..+||++++.+|..+++.|++| ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 35678888888886532 5779999999999999999999875588999999999999999999999998 777 78999
Q ss_pred ccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 120 IAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 120 ~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
+++++|+|++++++||+||+|+++..|.|++||++|.|+.+.+ +.|+.....+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHH
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 9999999999999999999999999999999999999977654 5566665444
No 61
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.85 E-value=4.2e-21 Score=183.64 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=116.7
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCC--ccEEEEecc
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGD--VQIVCATIA 121 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~~ 121 (242)
...|...|.+++.. ..+.++||||++++.++.++..|....|+++..+||+|++.+|..+++.|++|+ ++|||||++
T Consensus 487 ~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp TSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred ccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 34678888888876 367899999999999999999999656999999999999999999999999998 999999999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceEEEE--eecCcHH-HHHHHH
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVCIVL--YQKKDFS-RVVCML 178 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l--~~~~~~~-~~~~~~ 178 (242)
+++|+|+|++++||+||.|+++..|+|++||+||.|+.+.++++ +...... .+...+
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999988865554 3443333 344444
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.85 E-value=6.2e-22 Score=180.73 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=91.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEE----
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVI---- 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi---- 135 (242)
..+++||||++++.++.+++.|++. ++.+..+||+|++++ |.++..+|||||+++++|||+| +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 5779999999999999999999985 999999999999875 4556679999999999999997 99988
Q ss_pred ------EeC-----------CCCCHHHHHHHhhccCCCCCCceEEEEeecCcHH
Q 026168 136 ------HNT-----------LSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFS 172 (242)
Q Consensus 136 ------~~~-----------~p~~~~~y~Qr~GR~gR~g~~g~~i~l~~~~~~~ 172 (242)
||| .|.+.++|+||+||+|| |++|. +.|+++.+..
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 677 89999999999999999 89999 9999876643
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.83 E-value=8.9e-22 Score=176.48 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=95.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe-ccccccccccCccEEEEeCC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT-IAFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-~~~~~Gid~p~v~~Vi~~~~ 139 (242)
++++|||++ .+.++.+++.|.+. +.++..+||++++.+|.++++.|++|+.+||||| +++++|+|+|++++||+++.
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~ 425 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNE-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG 425 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTT-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC
T ss_pred CCeEEEEec-HHHHHHHHHHHHHc-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC
Confidence 445677776 88899999999875 6699999999999999999999999999999999 99999999999999999999
Q ss_pred CCCHHHHHHHhhccCCCCCCceEEEEee
Q 026168 140 SKSIESYYQESGRAGRDNLPSVCIVLYQ 167 (242)
Q Consensus 140 p~~~~~y~Qr~GR~gR~g~~g~~i~l~~ 167 (242)
|.++..|+|++||+||.|+.+..+++++
T Consensus 426 ~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 426 VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999998775555554
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.83 E-value=4.9e-20 Score=169.48 Aligned_cols=117 Identities=25% Similarity=0.371 Sum_probs=102.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC--CCccEEEEeccccccccccCccEEEEeCC
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT--GDVQIVCATIAFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~ 139 (242)
...+|||++++.++.+++.|.+. +..+..+||+|++++|.++++.|++ |..+|||||+++++|+|+ ++++||++|.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~-g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc-CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCc
Confidence 34589999999999999999984 8999999999999999999999999 899999999999999999 8999999999
Q ss_pred --------------CCCHHHHHHHhhccCCCCCC---ceEEEEeecCcHHHHHHHHHcC
Q 026168 140 --------------SKSIESYYQESGRAGRDNLP---SVCIVLYQKKDFSRVVCMLRNG 181 (242)
Q Consensus 140 --------------p~~~~~y~Qr~GR~gR~g~~---g~~i~l~~~~~~~~~~~~~~~~ 181 (242)
|.+.++|+||+|||||.|.. |.++.+ .+.+...+.+++...
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~ 456 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRP 456 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSC
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcC
Confidence 77999999999999999964 555554 455666666666554
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=2.3e-19 Score=163.66 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhC-------CCcEEEEcCCCCHHHHHHHHHHHhCCCcc---EEEEec
Q 026168 51 IGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKC-------KIKTVYYHAGLAARQRVVVQKKWHTGDVQ---IVCATI 120 (242)
Q Consensus 51 l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~ 120 (242)
+...+......+++||||++++.++.+++.|.+.. +..+..+||.+++ +|.++++.|++|+.+ |||+|+
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESS
T ss_pred HHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECC
Confidence 33334443356899999999999999999997631 1237788998764 799999999998766 889999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCC--CceEEEEee
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNL--PSVCIVLYQ 167 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~--~g~~i~l~~ 167 (242)
++++|+|+|++++||+++.|.+...|+||+||+||.+. ....+++++
T Consensus 508 ~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp TTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred hhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 99999999999999999999999999999999999874 333444444
No 66
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.81 E-value=2.9e-20 Score=165.14 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=104.8
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
...+...|.+++... .+.++||||++++.++.+++.|. +..+||+++..+|.++++.|++|+.+|||||++++
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~ 405 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLD 405 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCC
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchh
Confidence 345677788888763 67899999999999999999884 55799999999999999999999999999999999
Q ss_pred ccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC-ce--EEEEeecCcH
Q 026168 124 MGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP-SV--CIVLYQKKDF 171 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~-g~--~i~l~~~~~~ 171 (242)
+|+|+|++++||+++.|.++..|+||+||+||.|+. +. .+.++.....
T Consensus 406 ~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ 456 (472)
T 2fwr_A 406 EGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTG 456 (472)
T ss_dssp SSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC
T ss_pred cCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCc
Confidence 999999999999999999999999999999999844 34 4445655443
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.77 E-value=1.3e-18 Score=155.50 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC-Ccc-EEEEecc
Q 026168 45 KEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG-DVQ-IVCATIA 121 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT~~ 121 (242)
..|+..+.+++.+.. .+.++||||+++..++.++..|....+..+..+||++++.+|.++++.|++| ..+ +|++|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 356666777776432 5679999999999999999999875588999999999999999999999988 555 7999999
Q ss_pred ccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 122 FGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 122 ~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
+++|+|+|++++||++|+|+++..|.|++||++|.|+...+ +.++.....+
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999977655 4455655544
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.74 E-value=3.8e-17 Score=150.40 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhcc--cCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCcc---EEEEec
Q 026168 46 EALKQIGQLIKDR--FKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQ---IVCATI 120 (242)
Q Consensus 46 ~~~~~l~~~l~~~--~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~ 120 (242)
.|+..|..++... ..+.++|||++++..++.+...|... ++.+..+||+++.++|.++++.|++|... +|++|+
T Consensus 399 ~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 399 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR-RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred hHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 3444555544422 25789999999999999999999886 99999999999999999999999998764 899999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
++++|+|++++++||+||.|+++..|.|++||++|.|+...+ +.|+.....+
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 999999999999999999999999999999999999976544 4456665444
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.2e-16 Score=148.65 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCc---cEEEEec
Q 026168 45 KEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDV---QIVCATI 120 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~---~vlvaT~ 120 (242)
..|+..|.+++.... .+.++|||+.....++.|..+|... ++.+..+||+++..+|.++++.|+++.. .+|++|.
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK-GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH-TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 346777777776432 4679999999999999999999886 9999999999999999999999998654 4999999
Q ss_pred cccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCCceE--EEEeecCcHH
Q 026168 121 AFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPSVC--IVLYQKKDFS 172 (242)
Q Consensus 121 ~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~--i~l~~~~~~~ 172 (242)
+++.|+|++.+++||+||.|+++..+.|++||+.|.|+...+ +.|+.....+
T Consensus 634 agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 634 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp HHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred cccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 999999999999999999999999999999999999976544 4466665444
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.44 E-value=2.1e-12 Score=123.77 Aligned_cols=106 Identities=8% Similarity=0.083 Sum_probs=86.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC-----------CCcE-EEEcCC----------C----------CH----------
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC-----------KIKT-VYYHAG----------L----------AA---------- 98 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~-----------~~~~-~~~h~~----------~----------~~---------- 98 (242)
+.++||||+++..|..+++.|.+.. +.++ ..+|+. + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 3579999999999999999997642 1444 455542 2 22
Q ss_pred -------------------HHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCCCCCHHHHHHHhhccCCCCCC
Q 026168 99 -------------------RQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLP 159 (242)
Q Consensus 99 -------------------~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~p~~~~~y~Qr~GR~gR~g~~ 159 (242)
.+|..++++|++|+++|||+|+.+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147888999999999999999999999999999 678999999999999999999998643
Q ss_pred ----ceEEEEee
Q 026168 160 ----SVCIVLYQ 167 (242)
Q Consensus 160 ----g~~i~l~~ 167 (242)
|.++.|..
T Consensus 696 ~K~~G~IVdf~~ 707 (1038)
T 2w00_A 696 TKTFGNIVTFRD 707 (1038)
T ss_dssp TCCSEEEEESSC
T ss_pred CCCcEEEEEccc
Confidence 66666664
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.29 E-value=1.4e-10 Score=107.84 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=118.2
Q ss_pred EEeecCChHHHHHHHHHcCCCCceEEecCCCCCCeE----EEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHH
Q 026168 2 ALTATATQSVRLDILKALRIPHALVLETSFDRPNLK----YEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVE 76 (242)
Q Consensus 2 ~~SAT~~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~----~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~ 76 (242)
.||+|+..+. ..+.+..++. .+ .-++++|.++ ..++....+|+..+...+.+. ..++++||+|.|.+..+.
T Consensus 383 GMTGTA~tE~-~Ef~~iY~l~-Vv--~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~ 458 (997)
T 2ipc_A 383 GMTGTAKTEE-KEFQEIYGMD-VV--VVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSER 458 (997)
T ss_dssp EEESSCGGGH-HHHHHHHCCC-EE--ECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHH
T ss_pred ecCCCchHHH-HHHHHHhCCC-EE--EcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHH
Confidence 5899997764 5667777765 23 3344555443 345556778888887766543 368899999999999999
Q ss_pred HHHHHhh-------------------------------------------------------------------------
Q 026168 77 VSNFLNQ------------------------------------------------------------------------- 83 (242)
Q Consensus 77 l~~~L~~------------------------------------------------------------------------- 83 (242)
|+..|..
T Consensus 459 LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (997)
T 2ipc_A 459 LSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLA 538 (997)
T ss_dssp HHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhH
Confidence 9999981
Q ss_pred --hCCCcEEEEcCCCCHHHHHH-HHHHHhCCCccEEEEeccccccccccCc-------------------c---------
Q 026168 84 --KCKIKTVYYHAGLAARQRVV-VQKKWHTGDVQIVCATIAFGMGIDKPDV-------------------R--------- 132 (242)
Q Consensus 84 --~~~~~~~~~h~~~~~~~r~~-~~~~f~~g~~~vlvaT~~~~~Gid~p~v-------------------~--------- 132 (242)
.-|++...+++... +++. ++.+ .-..-.|.|||+.+|||.|+.-- .
T Consensus 539 ~~~~gI~H~VLNAK~h--e~EAeIIAq-AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (997)
T 2ipc_A 539 VLRQGIPHQVLNAKHH--AREAEIVAQ-AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKK 615 (997)
T ss_dssp HHHHCCCCCEECSSSH--HHHHHHHHT-TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHH
T ss_pred HHHcCCCeeeccccch--HHHHHHHHh-cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccc
Confidence 12556666766643 3332 2222 22235799999999999998521 1
Q ss_pred ----------------------------------------------EEEEeCCCCCHHHHHHHhhccCCCCCCceEEEEe
Q 026168 133 ----------------------------------------------FVIHNTLSKSIESYYQESGRAGRDNLPSVCIVLY 166 (242)
Q Consensus 133 ----------------------------------------------~Vi~~~~p~~~~~y~Qr~GR~gR~g~~g~~i~l~ 166 (242)
+||-...+.|..-=.|-.||+||.|.+|.+..|+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~L 695 (997)
T 2ipc_A 616 MVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYV 695 (997)
T ss_dssp HHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEE
T ss_pred ccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEE
Confidence 8999999999999999999999999999999998
Q ss_pred ecCc
Q 026168 167 QKKD 170 (242)
Q Consensus 167 ~~~~ 170 (242)
+-.|
T Consensus 696 SLeD 699 (997)
T 2ipc_A 696 SFDD 699 (997)
T ss_dssp ESSS
T ss_pred ECCh
Confidence 8665
No 72
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.85 E-value=4.4e-08 Score=89.64 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=101.6
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceEEe--cCCCCCCeEEEEEe--c------ChhHHHHHHHHHhcc--cCCCcEEEEe
Q 026168 1 MALTATATQSVRLDILKALRIPHALVLE--TSFDRPNLKYEVIG--K------SKEALKQIGQLIKDR--FKDQCGIIYC 68 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~i~--~~~~r~~i~~~v~~--~------~~~~~~~l~~~l~~~--~~~~~~iIF~ 68 (242)
|++|||+++ .+.+.+.++.+ ...+. .+++..++...+.. . +......+.+.+... ..++.++||+
T Consensus 379 il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF 455 (620)
T 4a15_A 379 IHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYF 455 (620)
T ss_dssp EEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 589999987 47888888886 44333 45565665444322 1 111123333332211 1356799999
Q ss_pred CchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec--cccccccccC--ccEEEEeCCCCCH-
Q 026168 69 LSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI--AFGMGIDKPD--VRFVIHNTLSKSI- 143 (242)
Q Consensus 69 ~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~--~~~~Gid~p~--v~~Vi~~~~p~~~- 143 (242)
+|....+.+++.|+ .++.+ ...+++..++..+++.|+ +.-.||+++. .+.+|||+|+ .+.||..++|...
T Consensus 456 ~Sy~~l~~v~~~l~-~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~ 530 (620)
T 4a15_A 456 PSYSLMDRVENRVS-FEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP 530 (620)
T ss_dssp SCHHHHHHHTSSCC-SCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC
T ss_pred CCHHHHHHHHHHHH-hcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC
Confidence 99999999998886 23322 445566668999999999 8889999985 9999999996 6689999988631
Q ss_pred ----------------------------HHHHHHhhccCCCCCCceEEEEeecC
Q 026168 144 ----------------------------ESYYQESGRAGRDNLPSVCIVLYQKK 169 (242)
Q Consensus 144 ----------------------------~~y~Qr~GR~gR~g~~g~~i~l~~~~ 169 (242)
....|-+||.=|....--+++++++.
T Consensus 531 ~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 531 DAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 12368999999986554455555443
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.68 E-value=1.1e-07 Score=85.80 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEE--EeccccccccccC----ccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVC--ATIAFGMGIDKPD----VRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv--aT~~~~~Gid~p~----v~~ 133 (242)
.++.+|||++|....+.+++.|.. . ....++.. .++.++++.|+++. .||+ +|..+.+|||+|+ ++.
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~---~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG---I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT---S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc---C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 467899999999999999988864 2 34556654 46888999999865 5776 8899999999997 899
Q ss_pred EEEeCCCCC-H-----------------------------HHHHHHhhccCCCCCCceEEEEeec
Q 026168 134 VIHNTLSKS-I-----------------------------ESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 134 Vi~~~~p~~-~-----------------------------~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
||.+++|.. + ..+.|.+||+-|....--+++++++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999999952 1 2346899999998544334445543
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.47 E-value=8.9e-06 Score=73.35 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=98.9
Q ss_pred CEEeecCChHHHHHHHHHcCCCCceE-------EecCCCCCCeEEEEEe--cC------hhHHHHHHHHHhcc--cCCCc
Q 026168 1 MALTATATQSVRLDILKALRIPHALV-------LETSFDRPNLKYEVIG--KS------KEALKQIGQLIKDR--FKDQC 63 (242)
Q Consensus 1 i~~SAT~~~~~~~~~~~~l~~~~~~~-------i~~~~~r~~i~~~v~~--~~------~~~~~~l~~~l~~~--~~~~~ 63 (242)
|++|||+++ .+.+.+.++.+.... +..++ ..+....+.. .. .+....+.+.+... ..++.
T Consensus 319 IltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~g~ 395 (551)
T 3crv_A 319 ILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKAN 395 (551)
T ss_dssp EEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCSSE
T ss_pred EEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 589999997 477888899874332 12334 4444333221 11 12234444433321 24668
Q ss_pred EEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEe--cccccccccc-----CccEEEE
Q 026168 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCAT--IAFGMGIDKP-----DVRFVIH 136 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT--~~~~~Gid~p-----~v~~Vi~ 136 (242)
++||++|....+.+++. .+..+..-..+++ +.+.++.|+...-.||++| ..+.+|||+| ..+.||.
T Consensus 396 ~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 396 VLVVFPSYEIMDRVMSR----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp EEEEESCHHHHHHHHTT----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred EEEEecCHHHHHHHHHh----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 99999999999888862 2444443333445 3556777854334899998 6999999999 3788998
Q ss_pred eCCCCC------------------------------HHHHHHHhhccCCCCCCceEEEEeec
Q 026168 137 NTLSKS------------------------------IESYYQESGRAGRDNLPSVCIVLYQK 168 (242)
Q Consensus 137 ~~~p~~------------------------------~~~y~Qr~GR~gR~g~~g~~i~l~~~ 168 (242)
.++|.. +....|-+||.=|..++--+++++++
T Consensus 469 ~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 469 VGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 888752 11125888999998655445555544
No 75
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.66 E-value=0.0018 Score=54.14 Aligned_cols=129 Identities=9% Similarity=-0.030 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc
Q 026168 44 SKEALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF 122 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 122 (242)
...|+..|.+++..-. .+.+++||+...+..+-+..++... +++...+.|.....+ .+ -.+....+.+.|.+.
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~-~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN-KVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS-SCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC-CCceEeCCCCchhhh-hh----cccCCceEEEEECCC
Confidence 4566666666664322 4669999999999999999999875 888899999855432 21 124566666668887
Q ss_pred ccccc-----ccCccEEEEeCCCCCHHH-HHHHhhccCCC----CCCceEEEEeecCcHHHHHHHH
Q 026168 123 GMGID-----KPDVRFVIHNTLSKSIES-YYQESGRAGRD----NLPSVCIVLYQKKDFSRVVCML 178 (242)
Q Consensus 123 ~~Gid-----~p~v~~Vi~~~~p~~~~~-y~Qr~GR~gR~----g~~g~~i~l~~~~~~~~~~~~~ 178 (242)
+-|+| ....+.||-||..+++.. .+|.+-|+.|. +++-..+-|+...-.+...--+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 87886 567889999999998876 58877777775 2456778888888777544444
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.58 E-value=0.0092 Score=55.85 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=66.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-ccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid~p~v~~Vi 135 (242)
.+.+++|.++|+.-+...++.+.+. .+.++..+||+++..++...++.+.+|..+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4678999999999888888776653 3789999999999999999999999999999999975 44567788888887
Q ss_pred EeCC
Q 026168 136 HNTL 139 (242)
Q Consensus 136 ~~~~ 139 (242)
.-..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 5443
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.62 E-value=0.056 Score=46.25 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=63.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc----ccccccCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG----MGIDKPDVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~----~Gid~p~v~~ 133 (242)
.+.++||.++++.-+..+++.+... .+..+..+||+.+..++......+..|..+|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 5778999999999999999888763 377899999999999988889999999999999996422 1144557777
Q ss_pred EEEeC
Q 026168 134 VIHNT 138 (242)
Q Consensus 134 Vi~~~ 138 (242)
||.-.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 77443
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.36 E-value=0.1 Score=50.99 Aligned_cols=77 Identities=8% Similarity=0.090 Sum_probs=64.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-cccccccccCccEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-AFGMGIDKPDVRFVI 135 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~Gid~p~v~~Vi 135 (242)
.+.+++|.++|+.-+...++.+.+.+ +..+..+++..+..++...++.+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 56789999999998988888776533 57899999999999999999999999999999995 455567788888777
Q ss_pred E
Q 026168 136 H 136 (242)
Q Consensus 136 ~ 136 (242)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.14 E-value=0.081 Score=51.49 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc----ccccccCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG----MGIDKPDVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~----~Gid~p~v~~ 133 (242)
.+.++||.++++.-+..+++.+..- .+..+..+||+++..++...+..+.+|..+|+|+|...- .-++..++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 5678999999999999999998872 356899999999998888999999999999999996322 1155667888
Q ss_pred EEEeCC
Q 026168 134 VIHNTL 139 (242)
Q Consensus 134 Vi~~~~ 139 (242)
||.-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 875443
No 80
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.14 E-value=0.35 Score=37.25 Aligned_cols=75 Identities=12% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
..++||.++++.-+..+++.+++.. +..+..++|+.+..++.. .+.++..+|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3489999999999888887776532 678999999988765543 3455778999999531 23456777
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+++||.-+
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88877543
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.63 E-value=0.51 Score=41.89 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+.+||.++++.-+....+.|.. .+..+..+||+.+..++..++..+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 56799999999999999999987 599999999999999999999999999999999995
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.31 E-value=1 Score=34.01 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=50.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-ccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gid~p 129 (242)
...++||.++++.-+..+++.+.+.. +..+..++|+.+..+.... + .+..+|+|+|.- +.. ..++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 35579999999999888888776532 5778899999876543322 2 356889999962 222 23556
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6777664
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.98 E-value=1.4 Score=34.80 Aligned_cols=74 Identities=8% Similarity=0.243 Sum_probs=52.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc--cccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FG--MGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gid~p 129 (242)
...++||.++++.-+..+++.+++ ..+..+..++|+.+..++...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 456799999999988888876654 2378899999998765543332 246899999952 21 345677
Q ss_pred CccEEEEe
Q 026168 130 DVRFVIHN 137 (242)
Q Consensus 130 ~v~~Vi~~ 137 (242)
++++||.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 78877743
No 84
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.78 E-value=1.1 Score=34.99 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc-ccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFG-MGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gid~p~ 130 (242)
.+.++||.++++.-+..+++.+.. ..+..+..++|+.+..++...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988888776654 347889999999887665544432 478999995 222 2346777
Q ss_pred ccEEEEe
Q 026168 131 VRFVIHN 137 (242)
Q Consensus 131 v~~Vi~~ 137 (242)
+.+||.-
T Consensus 177 ~~~lViD 183 (242)
T 3fe2_A 177 TTYLVLD 183 (242)
T ss_dssp CCEEEET
T ss_pred ccEEEEe
Confidence 8877743
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.63 E-value=0.95 Score=35.14 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p 129 (242)
...++||.++++.-+..+++.+.... +..+..++|+.+..++...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 45689999999999988888776532 67789999998876554332 357899999631 1234566
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7776664
No 86
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.43 E-value=0.81 Score=41.32 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHH--hCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW--HTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f--~~g~~~vlvaT~ 120 (242)
..+.+||.++++.-+....+.|.+. +..+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQL-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHH-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3568999999999999999999874 99999999999999998888888 578899999997
No 87
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.30 E-value=1.5 Score=36.51 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=53.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------ccccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p 129 (242)
...++||.|+++.-+..+++.+.+.. +..+..++|+.+..+... .+..+..+|+|+|.-. ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 35589999999999888887776532 678999999988765543 3445778999999531 2234566
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++.+||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7777764
No 88
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.19 E-value=0.57 Score=36.67 Aligned_cols=75 Identities=9% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc-cccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM-GIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gid~p~ 130 (242)
...++||.++++.-+..+++.++.. .+..+..++|+.+... ....+..+..+|+|+|. .+.. .+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999998888877653 2567788888765432 23445567789999994 3333 345666
Q ss_pred ccEEEEe
Q 026168 131 VRFVIHN 137 (242)
Q Consensus 131 v~~Vi~~ 137 (242)
+.+||.-
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 7777643
No 89
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.51 E-value=2.3 Score=36.26 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC---cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc------ccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI---KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG------MGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~---~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~------~Gid~p~ 130 (242)
...++||.|+++.-+...++.+.+.++. .+..+||+....++..... ..+|+|+|.-.- ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5778999999999999888888876565 8999999998876654432 468999995321 1345667
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 777774
No 90
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.25 E-value=2.1 Score=32.23 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cc-ccccccCcc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FG-MGIDKPDVR 132 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~-~Gid~p~v~ 132 (242)
...++||.++++.-+..+++.+.... ...+..++|+.+.......+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 45689999999999999998887643 357888999876544433322 25789999952 22 234566777
Q ss_pred EEEEe
Q 026168 133 FVIHN 137 (242)
Q Consensus 133 ~Vi~~ 137 (242)
+||.-
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
No 91
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.12 E-value=0.87 Score=35.02 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
...++||.++++.-+..+++.+.. ..+..+..++|+.+..++... +. ..+|+|+|.-. ....++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999998888877765 236788899998765443322 22 37899999532 23445566
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 92
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.19 E-value=1.5 Score=33.86 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=47.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc------ccccccccCc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA------FGMGIDKPDV 131 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid~p~v 131 (242)
.+.++||.++++.-+..+++.+... .+..+..++|+.+..++.. .+. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999998888763 3677888888876544332 223 34889999952 2234566777
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77764
No 93
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.17 E-value=1.7 Score=33.64 Aligned_cols=72 Identities=8% Similarity=0.127 Sum_probs=48.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc--ccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM--GIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~--Gid~p 129 (242)
.+.++||.++++.-+..+++.+... .+..+..++|+.+..+....+ +..+|+|+|.- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999998888877653 247889999987654433322 46799999952 112 35556
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++.+||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7776664
No 94
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.93 E-value=3 Score=33.09 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccc--cccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFG--MGIDKP 129 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gid~p 129 (242)
.+.++||.++++.-+..+++.+++. .+..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999888877763 35678888998876544332 3334 89999994 222 246777
Q ss_pred CccEEEE
Q 026168 130 DVRFVIH 136 (242)
Q Consensus 130 ~v~~Vi~ 136 (242)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887774
No 95
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=87.06 E-value=1.1 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 51 IGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 51 l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+...+.......+++|||.+-..+...+..|... |+++..+.||+.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~-G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQL-GLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTT-TCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHc-CCCEEEEcCcHH
Confidence 3334443335678999999999999999999874 889999999853
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.65 E-value=3.3 Score=32.40 Aligned_cols=72 Identities=7% Similarity=0.106 Sum_probs=49.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----c-cccccccCcc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----F-GMGIDKPDVR 132 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gid~p~v~ 132 (242)
.++||.++++.-+..+++.+... .+..+..++|+.+..+.... + ....+|+|+|.- + ...+++.++.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999888888777642 35678889998765443322 2 346899999953 1 1235667777
Q ss_pred EEEEe
Q 026168 133 FVIHN 137 (242)
Q Consensus 133 ~Vi~~ 137 (242)
+||.-
T Consensus 177 ~lViD 181 (253)
T 1wrb_A 177 YIVLD 181 (253)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77743
No 97
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=86.60 E-value=3.9 Score=33.99 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
...++||.++++.-+..+++.+.+. .+..+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999888888777652 3678999999988766554443 46799999421 12344556
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 98
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.87 E-value=5.5 Score=33.22 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=50.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-cccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gid~p~ 130 (242)
.+.++||.++++.-+..+++.+... .+..+..++|+....+.... ..+..+|+|+|.- +.. ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4558999999999888888777653 36788899998876443221 2467899999942 223 345667
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777774
No 99
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=84.69 E-value=2.5 Score=40.97 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCC----cEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-cccccc-ccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKI----KTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-FGMGID-KPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~----~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-~~~Gid-~p~ 130 (242)
.+.++||.++|+.-+..+++.++.. .+. .+..+||+.+..++....+.+.+ .+|+|+|.. +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999998888877642 356 78999999999888777777776 899999962 111111 446
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666664
No 100
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=84.00 E-value=1.4 Score=30.84 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=31.0
Q ss_pred CC-CcEEEEe-CchHHHHHHHHHHhhhCCCcEEEEcCCCCH
Q 026168 60 KD-QCGIIYC-LSKNECVEVSNFLNQKCKIKTVYYHAGLAA 98 (242)
Q Consensus 60 ~~-~~~iIF~-~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~ 98 (242)
.. .+++||| .+-..+..++..|... |+++..+.||+..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~-G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSL-GVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHT-TCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHc-CCceEEEeCcHHH
Confidence 45 7899999 5777888999999874 8899999998643
No 101
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.50 E-value=7.9 Score=26.44 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=42.6
Q ss_pred EEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEE
Q 026168 64 GIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCA 118 (242)
Q Consensus 64 ~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 118 (242)
.+||.+..+...++...++.+ |..+..+++....+.|.+.++.|......+--.
T Consensus 5 fvvfssdpeilkeivreikrq-gvrvvllysdqdekrrrerleefekqgvdvrtv 58 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ-GVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTV 58 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred EEEecCCHHHHHHHHHHHHhC-CeEEEEEecCchHHHHHHHHHHHHHcCCceeee
Confidence 467888888888888888876 889999999988888888888888665554433
No 102
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=83.32 E-value=2.9 Score=33.99 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=48.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------c-cccccc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------G-MGIDKP 129 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~-~Gid~p 129 (242)
..++||.++|+.-+..++..+.... +..+..++|+....... ....+|+|+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 4479999999999998887776531 46677777775432211 3567899999632 1 356778
Q ss_pred CccEEEEeC
Q 026168 130 DVRFVIHNT 138 (242)
Q Consensus 130 ~v~~Vi~~~ 138 (242)
++.+||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 888887533
No 103
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.58 E-value=6.9 Score=32.78 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=49.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-cccccCcc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GIDKPDVR 132 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gid~p~v~ 132 (242)
.++||.++++.-+..+++.+.+. .+..+..++|+.+..+.... + ....+|+|+|.- +.. .+++.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 57999999999998888877642 36788999999877554332 2 245789999952 112 24566677
Q ss_pred EEEE
Q 026168 133 FVIH 136 (242)
Q Consensus 133 ~Vi~ 136 (242)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 104
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.90 E-value=3 Score=35.00 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc-cccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM-GIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gid~p~ 130 (242)
...++||.++++.-+..+++.+... .+..+...+|+.+... ....+..+..+|+|+|. .+.. .++..+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4668999999999888888877652 3567777888765433 34555667889999994 2222 345556
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776663
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.18 E-value=9.4 Score=31.92 Aligned_cols=73 Identities=8% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccc-cccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGM-GIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gid~p~ 130 (242)
...++||.++++.-+..+++.+.. ..+..+..++|+.+..+....+. ...+|+|+|. .+.. .++..+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 467899999999998888887764 23577888999987765544332 2458999994 2333 345566
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 777664
No 106
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=80.97 E-value=2.3 Score=33.17 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc---cccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM---GIDK 128 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~---Gid~ 128 (242)
.+.++||.++++.-+..+++.+.+. .+..+..++|+..... .......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999888877653 2566766666532211 112223567899999942 222 4677
Q ss_pred cCccEEEEe
Q 026168 129 PDVRFVIHN 137 (242)
Q Consensus 129 p~v~~Vi~~ 137 (242)
.++.+||.-
T Consensus 174 ~~~~~lViD 182 (245)
T 3dkp_A 174 ASVEWLVVD 182 (245)
T ss_dssp TTCCEEEES
T ss_pred ccCcEEEEe
Confidence 788877743
No 107
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.88 E-value=7.1 Score=36.70 Aligned_cols=57 Identities=7% Similarity=-0.047 Sum_probs=44.1
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..+.+++|.++|+.-|...++.+.. .+++++..+.|+++...|.... ...|+|+|..
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3567899999999988877776653 3689999999999986554433 3789999964
No 108
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.54 E-value=4.7 Score=34.55 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=51.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-cccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gid~p~v 131 (242)
..++||.++|+.-+..+++.+.+. .+..+..++|+.+..++...+ ....+|+|+|.- +.+ .+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999888877652 356788899998876544322 246899999952 222 3456677
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 77774
No 109
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=79.88 E-value=1.9 Score=30.05 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=34.1
Q ss_pred HHHHHhcccCCCcEEEEeCchHH--HHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 51 IGQLIKDRFKDQCGIIYCLSKNE--CVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 51 l~~~l~~~~~~~~~iIF~~~~~~--~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+...+.......+++|||.+-.. +..++..|... |+.+..+.||+.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~-G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA-GFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH-TCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc-CCeEEEeCCcHH
Confidence 44444433356789999999877 78899999875 888888888853
No 110
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=79.53 E-value=2.1 Score=32.76 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---C----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc-cc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---C----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM-GI 126 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gi 126 (242)
...++||.++++.-+..+++.+.+. . +..+..++|+.+..+..+ .+ .+..+|+|+|.. +.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999988888776542 1 567888898875433211 11 246789999952 222 34
Q ss_pred cccCccEEEE
Q 026168 127 DKPDVRFVIH 136 (242)
Q Consensus 127 d~p~v~~Vi~ 136 (242)
++.++++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5666776664
No 111
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=79.34 E-value=9.4 Score=35.88 Aligned_cols=56 Identities=4% Similarity=-0.021 Sum_probs=44.3
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
..+..++|.++|+.-|...++++.. .+|+++..+.|+++..+|.... ...|+++|.
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3567899999999988888776654 3689999999999987665442 378999996
No 112
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=79.06 E-value=2.8 Score=28.22 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~-G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQ-GYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHH-TCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHc-CCceEEEecCCHH
Confidence 5678999999988899999999885 77 4888889864
No 113
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.61 E-value=2 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+..+++|||.+-..+...+..|... |+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~-G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN-GVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT-TCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC-CCCEEEecccHH
Confidence 4578999999999999999999874 888888988853
No 114
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.51 E-value=16 Score=29.74 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=49.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
.+.++||.++++.-+..+++.+... .+..+..++|+....+....+ . ..+|+|+|.-. ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCccccc
Confidence 4668999999999888888877653 256788899988765543333 2 57899999531 11245566
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 115
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=76.39 E-value=2.9 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=30.1
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
.+++|||.+-..+...+..|... |+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~-G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE-GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH-TCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHc-CCcEEEEcccHH
Confidence 78999999998899999999885 877888888864
No 116
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=75.94 E-value=5.4 Score=34.79 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=49.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-cccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGMG-I-DKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~G-i-d~p~ 130 (242)
..++||.++++.-+...++.+.+. .+..+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888777766652 3788999999986655432222 24789999953 2222 2 4566
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 117
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=75.52 E-value=6.1 Score=38.47 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=48.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----cccccc-cccCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMGI-DKPDVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gi-d~p~v~~ 133 (242)
.+.++||-++++.-+...++.+.+.++ .+..++|+.+ .++..+|+|+|. .+.++- .+.++.+
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS-SEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 577899999999999999999988655 7899999876 346789999993 333332 2456666
Q ss_pred EEE
Q 026168 134 VIH 136 (242)
Q Consensus 134 Vi~ 136 (242)
||.
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 118
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=75.37 E-value=2.1 Score=28.66 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~ 96 (242)
+..+++|||.+-..+...+..|... |+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~-G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-GIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-TCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC-CCCeEEeCCCH
Confidence 4668999999988899999999874 88888898885
No 119
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.27 E-value=8.1 Score=31.12 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc-----c-ccccccCc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF-----G-MGIDKPDV 131 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~-----~-~Gid~p~v 131 (242)
..++||.++++.-+..+++.+.+ ..+..+..+||+.+..+.... +. ..+|+|+|.-. . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 67899999999999988888874 236789999999887654332 32 37899999531 1 22355666
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 76664
No 120
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=74.72 E-value=9 Score=24.28 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
+..+++|||.+-..+...+..|.+. |+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~-G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEM-GYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHT-TCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHc-CCCCEEec-cCHH
Confidence 5678999999988899999999874 774 5555 7753
No 121
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=74.30 E-value=9.1 Score=35.62 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=46.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-cccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGMG-I-DKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~G-i-d~p~ 130 (242)
+.++||.|+++.-+...++.+.+. .+..+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999998888877766653 3889999999986655432221 35789999953 1222 3 4566
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 122
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=73.56 E-value=2.4 Score=28.60 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~ 96 (242)
+..+++|||.+-..+...+..|.+. |+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~-G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-GIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-TCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc-CCCEEEecChH
Confidence 5678999999988899999999885 89888888875
No 123
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.90 E-value=7.9 Score=33.80 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=47.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc-----ccc-c-cccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF-----GMG-I-DKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~-----~~G-i-d~p~ 130 (242)
..++||.++++.-+...++.+... .+..+..+||+.+..++...+. ...+|+|+|.-. ..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999998888777766652 3788999999986654432221 237899999532 222 3 5667
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+++||.-.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 78777533
No 124
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=72.39 E-value=16 Score=34.61 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=43.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+..++|.++|+.-|...++++.. .+|+++..+.|+++..+|.... ..+|+++|.
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 566899999999988877776653 3689999999999987665543 368999996
No 125
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.93 E-value=1.8 Score=39.46 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=47.1
Q ss_pred CCcEEEEeCchHHHHHH-HHHHhhhCC--CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------------ccc
Q 026168 61 DQCGIIYCLSKNECVEV-SNFLNQKCK--IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------------GMG 125 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l-~~~L~~~~~--~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------------~~G 125 (242)
..++||.++++.-+... ++.|.+.++ ..+..+||+.+..++...+. +..+|+|+|.-. ...
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999888887 777766433 78999999987654433222 568999999532 123
Q ss_pred ccccCccEEEE
Q 026168 126 IDKPDVRFVIH 136 (242)
Q Consensus 126 id~p~v~~Vi~ 136 (242)
+.+.++++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 46677888774
No 126
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=71.36 E-value=16 Score=34.84 Aligned_cols=57 Identities=4% Similarity=-0.020 Sum_probs=45.0
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhh---hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQ---KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~---~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..+.+++|.++|..-|...++.+.. .+|.++..+.|+++..+|.... ..+|+++|..
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3566899999999988887776654 3689999999999987766554 3789999964
No 127
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=71.20 E-value=4.2 Score=30.55 Aligned_cols=57 Identities=5% Similarity=-0.115 Sum_probs=34.6
Q ss_pred CCcEEEEeCchHHHHH-HHHHHhhh--CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc
Q 026168 61 DQCGIIYCLSKNECVE-VSNFLNQK--CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA 121 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~-l~~~L~~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~ 121 (242)
..++||.|+++.-+.. +.+.+... .+..+..++|+.....+...+. +..+|+|+|..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5789999999987776 55544432 2567888888764433221111 24789999953
No 128
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=70.32 E-value=6.5 Score=35.72 Aligned_cols=73 Identities=10% Similarity=0.031 Sum_probs=50.1
Q ss_pred CcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-cccCc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGMG-I-DKPDV 131 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~G-i-d~p~v 131 (242)
+++||.++++.-+...++.+.+.. +..+..++|+.+...+...+. ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 689999999988887777776543 788999999986543322221 24899999953 2223 3 56677
Q ss_pred cEEEEeC
Q 026168 132 RFVIHNT 138 (242)
Q Consensus 132 ~~Vi~~~ 138 (242)
.+||.-.
T Consensus 138 ~~vViDE 144 (696)
T 2ykg_A 138 TLMIFDE 144 (696)
T ss_dssp SEEEEET
T ss_pred cEEEEeC
Confidence 8777543
No 129
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=69.95 E-value=4.5 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~-G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA-GFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH-HCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc-CCCCeEEeCCcHH
Confidence 4678999999988899999999875 77 4888999964
No 130
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=69.59 E-value=4.3 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~-G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA-GFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT-TCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc-CCcCEEEecCCHH
Confidence 4568999999998899999999874 774 888888853
No 131
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=64.94 E-value=8.5 Score=25.93 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~-G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHEL-GYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT-TCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHC-CCCEEEecCCHH
Confidence 5678999999999999999999874 775577889864
No 132
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=64.90 E-value=5.4 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...+++|||.+-..+..++..|... |+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~-G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM-GLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH-TCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc-CCCCeEEecCCHH
Confidence 4668999999988899999999885 774 889999853
No 133
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=64.43 E-value=4.9 Score=28.81 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCcEEEEeCch--HHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSK--NECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~--~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...+++|||.+- ..+..++..|.. .|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~-~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQ-LGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHH-TTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHH-CCCeEEEeCCcHH
Confidence 456899999987 578889999987 4889999999853
No 134
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=64.26 E-value=5.5 Score=28.22 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=31.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~-G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY-GFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH-TCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc-CCcceEEEcCcHH
Confidence 5678999999988899999999875 87 5889999953
No 135
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=63.98 E-value=7 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~-G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA-GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT-TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc-CCcceEEEcCChh
Confidence 4568999999988888999999874 87 5889999974
No 136
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.73 E-value=25 Score=27.17 Aligned_cols=60 Identities=7% Similarity=-0.071 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
..|......++.. ...+++|+++++.-+..+.+.+.+ ++.. +..++|+.. ...+|+|+|.
T Consensus 119 ~GKT~~a~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 119 SGKTHVAMAAINE--LSTPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp TTHHHHHHHHHHH--SCSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 3444443333432 267899999999999999998887 6888 889998754 2567888884
No 137
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=63.34 E-value=10 Score=32.58 Aligned_cols=46 Identities=7% Similarity=-0.061 Sum_probs=39.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+.++||.|+++.-+...++.+.+ ++.. +..+||+... ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 57899999999999999999988 7999 9999998753 357888884
No 138
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.94 E-value=15 Score=34.93 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=45.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----cccc-c-cccC
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGMG-I-DKPD 130 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~G-i-d~p~ 130 (242)
+.++||.++++.-+...++.+.+. .+..+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999998888877777653 3789999999986654322221 24789999953 1222 2 4556
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 139
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=59.80 E-value=19 Score=32.82 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh--hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccccc-ccCc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ--KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMGID-KPDV 131 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~--~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gid-~p~v 131 (242)
.+.++++.++++.-+...++.++. ..|.++..++|+....++ ..+..+|+|+|. .+..+-. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 467899999999999999888742 247789999998765442 124788999995 2222322 4556
Q ss_pred cEEEE
Q 026168 132 RFVIH 136 (242)
Q Consensus 132 ~~Vi~ 136 (242)
.+||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66663
No 140
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=59.14 E-value=14 Score=29.49 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHhc--ccCCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 50 QIGQLIKD--RFKDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 50 ~l~~~l~~--~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
.|...+.. .....+++|||.+-..+...+..|....|+ ++..|.|++
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 34444443 224678999999988888888889822587 688899985
No 141
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=59.01 E-value=20 Score=32.75 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc--c-cccccccCccEEEE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA--F-GMGIDKPDVRFVIH 136 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~--~-~~Gid~p~v~~Vi~ 136 (242)
.+.+++|-++++..+..+++.+.+.++..+....|+.. ..+..+|+|+|.- + ...++..++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 35589999999999999998887766777877777754 4577899999974 2 23456667888876
Q ss_pred eCC
Q 026168 137 NTL 139 (242)
Q Consensus 137 ~~~ 139 (242)
-..
T Consensus 325 DEA 327 (666)
T 3o8b_A 325 DEC 327 (666)
T ss_dssp TTT
T ss_pred ccc
Confidence 554
No 142
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=58.43 E-value=7.3 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~-G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH-GYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT-TCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc-CCCCeEEeCCcHH
Confidence 4568999999988899999999874 77 4888888853
No 143
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=57.37 E-value=28 Score=28.52 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=46.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhh---CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQK---CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
...++||.++++.-+..+++.+.+. .+..+..++++..... .....+|+|+|.-. ....++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 4568999999999998888877752 3556777776643221 12367899999532 23445667
Q ss_pred ccEEEEe
Q 026168 131 VRFVIHN 137 (242)
Q Consensus 131 v~~Vi~~ 137 (242)
+++||.-
T Consensus 146 ~~~iIiD 152 (395)
T 3pey_A 146 IKIFVLD 152 (395)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 7777643
No 144
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=56.66 E-value=9.3 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
...+++|||.+-..+...+..|... |+ ++..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~-G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSA-GFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHT-TCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHc-CCCCEEEecCHH
Confidence 4567999999988899999999874 77 488888885
No 145
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=56.09 E-value=9.9 Score=34.89 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=41.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhh--hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQ--KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~--~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
+.++++.++++.-+..+++.+.. ..+..+..++|+.+..++. .+..+|+|+|+
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 67899999999999999988862 3478999999987654431 24678999996
No 146
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=55.48 E-value=17 Score=34.91 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=45.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec-----ccccc-ccccCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI-----AFGMG-IDKPDVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G-id~p~v~~ 133 (242)
.+.++||.++++.-+...++.+.+.++ .+..++|+.+.. ...+|+|+|. .+.+| ..+.++.+
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~l 195 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAW 195 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCE
Confidence 567899999999999999988887645 788899987532 3567888885 22222 33445666
Q ss_pred EE
Q 026168 134 VI 135 (242)
Q Consensus 134 Vi 135 (242)
||
T Consensus 196 VV 197 (1010)
T 2xgj_A 196 VI 197 (1010)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 147
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=54.46 E-value=26 Score=29.01 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC----CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc-------ccccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC----KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG-------MGIDK 128 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~-------~Gid~ 128 (242)
...++||.++++.-+..+++.+.+.. +..+...+++...... .....+|+|+|...- ..+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 34589999999999998887776521 4567777776543211 134678999995321 24556
Q ss_pred cCccEEEEe
Q 026168 129 PDVRFVIHN 137 (242)
Q Consensus 129 p~v~~Vi~~ 137 (242)
.++.+||.-
T Consensus 167 ~~~~~iViD 175 (412)
T 3fht_A 167 KKIKVFVLD 175 (412)
T ss_dssp GGCCEEEEE
T ss_pred hhCcEEEEe
Confidence 677777743
No 148
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=54.10 E-value=10 Score=26.57 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=30.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-..+...+..|... |+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~-G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALN-GFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHH-TCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHc-CCcceEEecCCcc
Confidence 4568999999988888899999875 87 4888889974
No 149
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=50.72 E-value=52 Score=26.73 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=39.4
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 62 QCGIIYCLS-----------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 62 ~~~iIF~~~-----------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
+-+||+.+. .++++.|.+.|+. +|+.|. .+..++..+-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQN-LGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHH-CCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999987 6789999999987 699976 4567899999999999964
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=50.66 E-value=76 Score=28.82 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEc--------------------CCC--C---
Q 026168 44 SKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYH--------------------AGL--A--- 97 (242)
Q Consensus 44 ~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h--------------------~~~--~--- 97 (242)
...|.-.+..++... +.++||.+++...+..++..|..-++.. +.+|- ... +
T Consensus 38 gs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i 115 (664)
T 1c4o_A 38 GTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEI 115 (664)
T ss_dssp TSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHH
T ss_pred CcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHH
Confidence 344444444555432 4579999999999999999998754433 33332 222 2
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccccccc
Q 026168 98 ARQRVVVQKKWHTGDVQIVCATIAFGMGI 126 (242)
Q Consensus 98 ~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 126 (242)
...|..++..+..+.-.|+|+|-.+-.|+
T Consensus 116 ~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 116 ERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 45678888888777766888875544554
No 151
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.51 E-value=21 Score=30.90 Aligned_cols=72 Identities=7% Similarity=-0.020 Sum_probs=50.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc-ccc--ccccCccE
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF-GMG--IDKPDVRF 133 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~-~~G--id~p~v~~ 133 (242)
..+++||.++++.-+...++.+.+.. +..+..++|+.+..++ ..+..+|+|+|.-. ... ..+.++.+
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 34589999999999988888886531 2468899999876554 46788999999542 221 34556777
Q ss_pred EEEeC
Q 026168 134 VIHNT 138 (242)
Q Consensus 134 Vi~~~ 138 (242)
||.-.
T Consensus 229 iIiDE 233 (510)
T 2oca_A 229 MMNDE 233 (510)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 76543
No 152
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=50.17 E-value=7.4 Score=34.65 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=48.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhh-------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecc-----ccc--cc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQK-------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIA-----FGM--GI 126 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~--Gi 126 (242)
..++||.++++.-+..+++.+... ....+..++|+.+.. ..+..+..+..+|+|+|.- +.. ..
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 347999999999988888777652 134567777776543 3445555567899999953 222 33
Q ss_pred cccCccEEEE
Q 026168 127 DKPDVRFVIH 136 (242)
Q Consensus 127 d~p~v~~Vi~ 136 (242)
.+..+.+||.
T Consensus 172 ~~~~~~~lVi 181 (579)
T 3sqw_A 172 FFRFVDYKVL 181 (579)
T ss_dssp HCTTCCEEEE
T ss_pred ccccCCEEEE
Confidence 5566777664
No 153
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=49.50 E-value=32 Score=33.01 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=40.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+.++||.++++.-+..+++.+.+.+ +..+..+||+.+. +++.+|+|+|.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECH
Confidence 56789999999999999999998754 6789999998752 35678888884
No 154
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=48.34 E-value=11 Score=33.24 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=48.3
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh-------CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc-----cc--ccc
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK-------CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF-----GM--GID 127 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~-----~~--Gid 127 (242)
.++||.++++.-+..+++.+... ....+..+.|+.+... .+..+..+..+|+|+|.-. .. ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 47999999999998888877651 1345677777765433 3445555678999999632 22 234
Q ss_pred ccCccEEEE
Q 026168 128 KPDVRFVIH 136 (242)
Q Consensus 128 ~p~v~~Vi~ 136 (242)
+..+.+||.
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 566777664
No 155
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=47.92 E-value=49 Score=26.42 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
+.++++.|.+.|+. +|+.|. .+..++..+-.+.+++|..
T Consensus 47 t~~D~~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEE-LHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-CCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 45789999999987 699976 4567899999999999974
No 156
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=47.47 E-value=31 Score=27.17 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
...++++||.+-..+...+..|.+..|+ ++..|.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 4678999999988888888888753477 488899985
No 157
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=47.07 E-value=64 Score=23.97 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=37.6
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 62 QCGIIYCLS-----------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 62 ~~~iIF~~~-----------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
+.+||+.+. .++++.|.+.|+. +|+.|.. +..++..+-.+.+++|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~-LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQN-LGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHH-TTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHH-CCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 457887764 4789999999987 6999864 567888899999999864
No 158
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=46.34 E-value=33 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
...+++|||.+-..+...+..|.. .|+ ++..|.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~-~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALAT-LDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHH-TTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHH-cCCCCceeeCChHHH
Confidence 467899999998888899999987 487 58899999864
No 159
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=46.22 E-value=13 Score=29.90 Aligned_cols=50 Identities=8% Similarity=-0.079 Sum_probs=42.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+.+.+|||.++..+++.|.+.|.. +|+.|.. |..++.++-.+.++.|...
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~-LgF~V~~-~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTS-LGYEVQK-FLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHH-HTEEEEE-EESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHH-CCCEEEE-eeCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999987 5998765 4678899999999999753
No 160
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.12 E-value=61 Score=21.34 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=55.6
Q ss_pred EEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccE
Q 026168 37 KYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQI 115 (242)
Q Consensus 37 ~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 115 (242)
-|.+.. ++.+.+..-.+-+.+..+..+++|..+.+.-..++-+++.+ +|+++..+--..+..+-++.-....+..+.|
T Consensus 26 gyqvrdvndsdelkkemkklaeeknfekiliisndkqllkemlelisk-lgykvflllqdqdeneleefkrkiesqgyev 104 (134)
T 2lci_A 26 GYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISK-LGYKVFLLLQDQDENELEEFKRKIESQGYEV 104 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHH-HTCCEEEEEECSCHHHHHHHHHHHHTTTCEE
T ss_pred CeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHH-hCceeEEEeecCchhHHHHHHHHHHhCCeee
Confidence 344443 44444444444444445778999999999988888888876 5999988888877777666655555555655
Q ss_pred EEEec
Q 026168 116 VCATI 120 (242)
Q Consensus 116 lvaT~ 120 (242)
--.|+
T Consensus 105 rkvtd 109 (134)
T 2lci_A 105 RKVTD 109 (134)
T ss_dssp EEECC
T ss_pred eecCC
Confidence 54444
No 161
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=45.74 E-value=31 Score=31.46 Aligned_cols=54 Identities=9% Similarity=-0.033 Sum_probs=40.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhh--hCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEec
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQ--KCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATI 120 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~--~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 120 (242)
.+.++++.++++.-+..+++.++. ..+..+..++|+....++. .+..+|+|+|+
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 129 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-------LKNYDIIITTY 129 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-------GGGCSEEEECH
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-------cCCCCEEEEcH
Confidence 467899999999989888887742 2478899999987654431 13678999996
No 162
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=45.59 E-value=49 Score=28.75 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCC---CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccc------cccccccC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCK---IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAF------GMGIDKPD 130 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~------~~Gid~p~ 130 (242)
...++||.++++.-+..+++.+.+..+ ..+....++..... .....+|+|+|.-. ...+++.+
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~ 259 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARD 259 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccC
Confidence 355899999999999999888876432 23333333221111 12367899999532 12456677
Q ss_pred ccEEEE
Q 026168 131 VRFVIH 136 (242)
Q Consensus 131 v~~Vi~ 136 (242)
+++||.
T Consensus 260 ~~lIIi 265 (508)
T 3fho_A 260 IKVFVL 265 (508)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887774
No 163
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=44.88 E-value=66 Score=21.34 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=30.7
Q ss_pred CCCcEEEEeCc------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHH
Q 026168 60 KDQCGIIYCLS------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQK 106 (242)
Q Consensus 60 ~~~~~iIF~~~------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~ 106 (242)
...+++||..+ --.|.++.++|.+. +.....+.=...+..+....+
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNL-NVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGCHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHc-CCCcEEEECCCCHHHHHHHHH
Confidence 56689999984 77899999999874 766655543334444444333
No 164
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=44.66 E-value=87 Score=22.95 Aligned_cols=48 Identities=2% Similarity=-0.019 Sum_probs=37.7
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 61 DQCGIIYCLS--------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 61 ~~~~iIF~~~--------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
.+.+|||.+. ..+++.|.+.|.. +|+.|. .|..++..+-.+.++.|..
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~-LgF~V~-~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKL-LGYDVH-VLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHH-TTEEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHH-CCCEEE-EeeCCCHHHHHHHHHHhhh
Confidence 4567888764 3488999999987 699875 5577889899999999976
No 165
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=44.45 E-value=36 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
...++++||.+-..+...+.+|... |+ ++..+.||+..
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~-Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKEL-GFEHVYQLHDGILN 218 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHH-TCSSEEEETTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHc-CCCCEEEecCHHHH
Confidence 5678999999999999999999886 77 68889998643
No 166
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=43.81 E-value=98 Score=23.04 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCCcEEEEeCc--------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 60 KDQCGIIYCLS--------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 60 ~~~~~iIF~~~--------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+.+.+|||.+. ..+++.|.+.|.. +|+.|..+ -.++..+-.+.++.|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~-LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSD-LGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHH-TTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 34568888874 3589999999987 79998765 578898989999988754
No 167
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=43.25 E-value=13 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=28.3
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh------CCCcEEEEcCCCC
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK------CKIKTVYYHAGLA 97 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~------~~~~~~~~h~~~~ 97 (242)
.+++|||.+-..+...+..|... ...++..+.||+.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 37999999988888888888875 1346888888864
No 168
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=43.13 E-value=16 Score=29.85 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=34.4
Q ss_pred HHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCC
Q 026168 50 QIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGL 96 (242)
Q Consensus 50 ~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~ 96 (242)
.|.+.+.......++|+||.+-..+...+..|.+..|+. +..|.|++
T Consensus 248 ~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 248 ELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp HHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred HHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 444444333356789999999999999998887534874 88888884
No 169
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=42.72 E-value=17 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHhhhCCCcEEEEcCCC
Q 026168 61 DQCGIIYCLSK---------NECVEVSNFLNQKCKIKTVYYHAGL 96 (242)
Q Consensus 61 ~~~~iIF~~~~---------~~~~~l~~~L~~~~~~~~~~~h~~~ 96 (242)
..++||||.+- ..+..++..|... |+.+..+.||+
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~-G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE-GKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTT-TCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhC-CCcEEEeCCcH
Confidence 56899999987 3477788888874 88899999984
No 170
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=40.40 E-value=37 Score=29.06 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=44.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhhh----CCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccc-------ccccccC
Q 026168 62 QCGIIYCLSKNECVEVSNFLNQK----CKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG-------MGIDKPD 130 (242)
Q Consensus 62 ~~~iIF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~-------~Gid~p~ 130 (242)
.++||.++++.-+..+++.+.+. .+..+....++...... .....+|+|+|...- ..+++.+
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 47999999999988887766542 14556666655332111 123568999996432 3567778
Q ss_pred ccEEEEeC
Q 026168 131 VRFVIHNT 138 (242)
Q Consensus 131 v~~Vi~~~ 138 (242)
+.+||.-.
T Consensus 236 ~~~iViDE 243 (479)
T 3fmp_B 236 IKVFVLDE 243 (479)
T ss_dssp CCEEEECC
T ss_pred CCEEEEEC
Confidence 88877533
No 171
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=40.18 E-value=92 Score=22.73 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 71 KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 71 ~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
..+++.|.+.|.. +|+.|. .|..++..+-.+.++.|..
T Consensus 54 ~~D~~~L~~~f~~-LgF~V~-~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEE-LHFEIK-PHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 6788899999987 799985 4577888888889998864
No 172
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=39.68 E-value=16 Score=28.75 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=30.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
...+++|||.+-..+...+..|.. .|+ ++..|.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~-~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKA-LGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHH-TTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHH-cCCCCceeeCCcH
Confidence 567899999998888888999986 487 488888885
No 173
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=39.62 E-value=49 Score=25.16 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHH----HHHHHHHHHhCCCccEEEEecccc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAAR----QRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~----~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
.-++++|...+-+.+..+.+.+ +.+++-+..+|.+.... --.+..+.+.+...+|+-+|-+++
T Consensus 43 ~Ik~iVVAS~sG~TA~k~~e~~-~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~ls 109 (201)
T 1vp8_A 43 GIKHLVVASSYGDTAMKALEMA-EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILS 109 (201)
T ss_dssp TCCEEEEECSSSHHHHHHHHHC-TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTTT
T ss_pred CCCEEEEEeCCChHHHHHHHHh-cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEecccc
Confidence 4567888888889999999887 32344456677664321 123455666667788998887754
No 174
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.74 E-value=86 Score=20.92 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=30.6
Q ss_pred cCCCcEEEEeC------chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHH
Q 026168 59 FKDQCGIIYCL------SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQ 105 (242)
Q Consensus 59 ~~~~~~iIF~~------~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~ 105 (242)
....+++||.. +.-.|..+.++|.+. +.....+.=..++..+....
T Consensus 13 i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-gi~y~~~di~~d~~~~~~l~ 64 (111)
T 3zyw_A 13 THAAPCMLFMKGTPQEPRCGFSKQMVEILHKH-NIQFSSFDIFSDEEVRQGLK 64 (111)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-TCCCEEEEGGGCHHHHHHHH
T ss_pred HhcCCEEEEEecCCCCCcchhHHHHHHHHHHc-CCCeEEEECcCCHHHHHHHH
Confidence 35668999994 667788999999874 76665554444454444443
No 175
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=38.05 E-value=57 Score=25.63 Aligned_cols=71 Identities=7% Similarity=-0.026 Sum_probs=44.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhC---CCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccc---ccccCccEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKC---KIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMG---IDKPDVRFV 134 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G---id~p~v~~V 134 (242)
..++||.++++.-+....+.+.+.. +..+..++++....+ -..+..+|+|+|.-.-.. ..+.++.+|
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~v 229 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEE
Confidence 4589999999998888888887642 235667777654322 122567899999632211 134456666
Q ss_pred EEeC
Q 026168 135 IHNT 138 (242)
Q Consensus 135 i~~~ 138 (242)
|.-.
T Consensus 230 IiDE 233 (282)
T 1rif_A 230 MNDE 233 (282)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6433
No 176
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=37.67 E-value=19 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...++++||.+-..+...+..|... |.++..|.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~-G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSL-GVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHT-TCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHc-CCCcEEecCcHH
Confidence 4678999999999999999999885 677888888854
No 177
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=37.28 E-value=70 Score=26.15 Aligned_cols=48 Identities=2% Similarity=0.004 Sum_probs=38.8
Q ss_pred CCcEEEEeCch------------HHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 61 DQCGIIYCLSK------------NECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 61 ~~~~iIF~~~~------------~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
.+.+|||.+.. .+++.|.+.|+. +|+.|. .|..++..+-.+.+++|..
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQE-LNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHH-TTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHH-CCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 45678888752 789999999987 699875 5678899999999999874
No 178
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=35.47 E-value=54 Score=27.80 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
...++|+||.+-..+..++..|... |+ ++..|.|++..
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~-G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYA-GVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHH-TCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHc-CCCCeEEECCCHHH
Confidence 4568999999988888999999874 77 68899998643
No 179
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=35.38 E-value=1.1e+02 Score=25.03 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=39.7
Q ss_pred CCcEEEEeCc-------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 61 DQCGIIYCLS-------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 61 ~~~~iIF~~~-------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
.+-+|||.+. ..+++.|.+.|+. +|+.|. .+..++..+-.+.+++|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKT-LGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHH-CCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 4468898874 6789999999987 699876 45678999999999999754
No 180
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=35.23 E-value=35 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCcEEEEeCchHH-HHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNE-CVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~-~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...++||||.+-.. +..++..|.. .|+ ++..+.||+.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~-~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRT-FGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHH-TTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHH-cCCCCEEEecCCHH
Confidence 46789999998665 7888888887 477 6888999853
No 181
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.20 E-value=2.5e+02 Score=25.37 Aligned_cols=104 Identities=10% Similarity=0.142 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcC--------------------CC--C---H
Q 026168 45 KEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHA--------------------GL--A---A 98 (242)
Q Consensus 45 ~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~--------------------~~--~---~ 98 (242)
..+.-.+..++... +.++||.+++...|..++..|..-++. .+.+|-+ .. + .
T Consensus 43 s~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~ 120 (661)
T 2d7d_A 43 TGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID 120 (661)
T ss_dssp SCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHH
T ss_pred cHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHH
Confidence 33433444455432 457999999999999999999875433 3444431 11 1 4
Q ss_pred HHHHHHHHHHhCCCccEEEEeccccccccccC----ccEEEEeCCCCCHHHHHHHh
Q 026168 99 RQRVVVQKKWHTGDVQIVCATIAFGMGIDKPD----VRFVIHNTLSKSIESYYQES 150 (242)
Q Consensus 99 ~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~----v~~Vi~~~~p~~~~~y~Qr~ 150 (242)
..|..++..+..++-.|+|+|-.+-.|+=.|. -.+.+..|-..+...+.++.
T Consensus 121 ~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 121 KLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp HHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 57888888887776667787765546653332 33566777777777776654
No 182
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=34.71 E-value=2.3e+02 Score=24.61 Aligned_cols=112 Identities=6% Similarity=0.005 Sum_probs=71.8
Q ss_pred EEEEEe-cChhHHHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCC-------CC-----HHHHHH
Q 026168 37 KYEVIG-KSKEALKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAG-------LA-----ARQRVV 103 (242)
Q Consensus 37 ~~~v~~-~~~~~~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-------~~-----~~~r~~ 103 (242)
.+.+.. ....+.-.+..+++. .++++||.+++...+..+++.|+.-++..+.+|-+. .+ ..+|..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~--~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH--SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHH
Confidence 344444 334444444555543 366899999999999999999986434445444332 11 135788
Q ss_pred HHHHHhCCCccEEEEecccccccccc-----CccEEEEeCCCCCHHHHHHHh
Q 026168 104 VQKKWHTGDVQIVCATIAFGMGIDKP-----DVRFVIHNTLSKSIESYYQES 150 (242)
Q Consensus 104 ~~~~f~~g~~~vlvaT~~~~~Gid~p-----~v~~Vi~~~~p~~~~~y~Qr~ 150 (242)
++..+.+++..|+|+|-..-.+.=.| .-.+.+..|-..+.+++.++.
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 88888888888999885544443333 235677778777887776664
No 183
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=34.56 E-value=1.1e+02 Score=24.37 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred CcEEEEeCc-------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 62 QCGIIYCLS-------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 62 ~~~iIF~~~-------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+-+|||.+. .++++.|++.|+. +|+.|. .+..++..+-.+.+++|...
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKT-LGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHH-CCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 346777764 6789999999987 699876 45678999999999999854
No 184
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=34.05 E-value=1.2e+02 Score=21.58 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+..+++.|.+.|.. +|+.|..+ ..++..+-.+.++.|...
T Consensus 39 t~~D~~~L~~~f~~-LgF~V~~~-~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRN-LKYEVRNK-NDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEE-ESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHH-CCCEEEEe-eCCCHHHHHHHHHHHHHh
Confidence 45588999999987 69997654 568888888999998753
No 185
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=33.95 E-value=56 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=27.9
Q ss_pred CCCcEEEEeCch-HHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSK-NECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~-~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+- ..+..++..|.. .|+ ++..+.||+.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~-~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKL-YGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHH-TTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHH-cCCCcEEEecCCHH
Confidence 456799999874 357778888877 477 6888999853
No 186
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=33.70 E-value=44 Score=23.81 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=24.1
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHh-------hhCCC-cEEEEcCCCCH
Q 026168 60 KDQCGIIYCL-SKNECVEVSNFLN-------QKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 60 ~~~~~iIF~~-~~~~~~~l~~~L~-------~~~~~-~~~~~h~~~~~ 98 (242)
...+++|||. +-......+..|. +..|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 4567899998 5444444444332 12476 68889999753
No 187
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=33.54 E-value=1.2e+02 Score=24.21 Aligned_cols=48 Identities=8% Similarity=0.076 Sum_probs=38.0
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 61 DQCGIIYCLS--------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 61 ~~~~iIF~~~--------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
.+-+|||.+. .++++.|.+.|+. +|+.|.. +..++..+-.+.+++|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~-LGF~V~~-~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSD-LGFEVKC-FNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHH-TTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 4457888774 3789999999987 6998765 467889898888888874
No 188
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=33.28 E-value=53 Score=26.65 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.8
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKN-ECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~-~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
...+++|||.+-. .+..++..|+. .|+ ++..+.||+
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~-~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTL-FGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHH-TTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHH-cCCCceEEccCCH
Confidence 4678999998766 78888888887 477 588898885
No 189
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=31.61 E-value=86 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=27.6
Q ss_pred CCcEEEEeCchH-HHHHHHHHHhhhCCC-cEEEEcCC
Q 026168 61 DQCGIIYCLSKN-ECVEVSNFLNQKCKI-KTVYYHAG 95 (242)
Q Consensus 61 ~~~~iIF~~~~~-~~~~l~~~L~~~~~~-~~~~~h~~ 95 (242)
..+++|||.+-. .+..++..|. . |+ ++..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~-G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-L-GGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-H-TTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-c-CCceEEEeCCC
Confidence 678999999877 7888888888 5 77 48889998
No 190
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=31.51 E-value=1.5e+02 Score=21.44 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHcCCCCceEEecCCCCCCeEEEEEecChhHHHHHHHHHhcc-cCCCcEEEEeCchHHHHHHHHHHhhhCC
Q 026168 8 TQSVRLDILKALRIPHALVLETSFDRPNLKYEVIGKSKEALKQIGQLIKDR-FKDQCGIIYCLSKNECVEVSNFLNQKCK 86 (242)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~i~~~~~r~~i~~~v~~~~~~~~~~l~~~l~~~-~~~~~~iIF~~~~~~~~~l~~~L~~~~~ 86 (242)
|..+.+....++.....+. .....-+.+.........+-...+.+.+... ...+.+.|.+.+...+..+.+.|... |
T Consensus 8 t~~Il~~An~li~~~~~~~-~~~~~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~-g 85 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVT-AFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKAR-G 85 (174)
T ss_dssp CHHHHHHHHTTSCC---------CCCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHhcCCCccc-CCCCCCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHc-C
Confidence 4556666666664332111 0001112233333333344444455444321 13456888899999999999999874 7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEeccccccccccCccEEEEeCC
Q 026168 87 IKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGIDKPDVRFVIHNTL 139 (242)
Q Consensus 87 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid~p~v~~Vi~~~~ 139 (242)
+.+..+.++-. ...-.|.|.|--.+.|+.++ .||.++.
T Consensus 86 i~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf~---~V~~~~~ 123 (174)
T 3dmn_A 86 EQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEFD---AVIVWNA 123 (174)
T ss_dssp CCEEECSSCC-------------CCCSSEEEEEGGGCTTCCEE---EEEEETC
T ss_pred Ccceeeccccc------------ccCCCeEEEEccccCCcCCC---EEEEecC
Confidence 77776665431 12346999999999999865 4455553
No 191
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=31.23 E-value=61 Score=25.30 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=28.6
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKN-ECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~-~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-. .+..++..|... |+ ++..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~-G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVI-GQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHT-TCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHc-CCCCeEEecCCHH
Confidence 4667899998765 788888888874 77 5888888853
No 192
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=30.91 E-value=31 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+..++++||.+-..+...+..|+.. |+.+..+.|++.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~-G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEK-GYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT-TCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc-CCcEEEEcchHH
Confidence 4568999999999999999999885 888888888864
No 193
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=30.76 E-value=1.1e+02 Score=19.80 Aligned_cols=55 Identities=5% Similarity=-0.027 Sum_probs=33.3
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEE
Q 026168 61 DQCGIIYCL------SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116 (242)
Q Consensus 61 ~~~~iIF~~------~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 116 (242)
..+++||.. +.-.|..+..+|.+. +.....+.-...+..+....+.+....+..+
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~-~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNST-GVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHH-TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHC-CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 446888984 556788888888874 6666656554455555444444433333333
No 194
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=30.67 E-value=1.4e+02 Score=20.85 Aligned_cols=46 Identities=13% Similarity=0.022 Sum_probs=30.8
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHH
Q 026168 61 DQCGIIYCL------SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKK 107 (242)
Q Consensus 61 ~~~~iIF~~------~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~ 107 (242)
..+++||.. +.-.|..+..+|.+. ++....+.=...+..+....+.
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-gv~y~~vdI~~d~~~~~~L~~~ 85 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQALAAC-GERFAYVDILQNPDIRAELPKY 85 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHHHTT-CSCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHHHHc-CCceEEEECCCCHHHHHHHHHH
Confidence 346889987 567889999999874 7776666554455555444433
No 195
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=29.22 E-value=42 Score=26.85 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~ 97 (242)
...++++||.+-..+...+..|.. .|+. +..|.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~-~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYL-CGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHH-TTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHH-cCCCCceeeCCcHH
Confidence 467899999998888888888876 4774 888989854
No 196
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=29.21 E-value=1.4e+02 Score=27.56 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=36.7
Q ss_pred cCCCcEEEEeCchHHHHHHHHHHhhhC-CCcEEEEcCCCCHHHHHHHHHHH--------hCCCccEEEEec
Q 026168 59 FKDQCGIIYCLSKNECVEVSNFLNQKC-KIKTVYYHAGLAARQRVVVQKKW--------HTGDVQIVCATI 120 (242)
Q Consensus 59 ~~~~~~iIF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~~~~~~r~~~~~~f--------~~g~~~vlvaT~ 120 (242)
...+++||.|+ ...+..-.+.+.+.. +..+..+||.............+ ..+...|+|+|.
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 35678999998 444555555554433 67888899885443332222211 234678999994
No 197
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=28.60 E-value=1.4e+02 Score=23.27 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+.++++.|++.|+. +|+.|. .+..++..+-.+.+++|...
T Consensus 39 ~~~D~~~l~~~f~~-LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 39 TDVDAANLRETFRN-LKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHH-CCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 34589999999987 699976 45678999999999999854
No 198
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=28.57 E-value=62 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.3
Q ss_pred CCCcEEEEeCchH-HHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKN-ECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~-~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...+++|||.+-. .+..++..|.. .|+ ++..+.|++.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~-~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKY-NGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHH-TTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHH-cCCCCeEEecCCHH
Confidence 4668999998866 57788888877 477 5888888853
No 199
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=27.55 E-value=1e+02 Score=24.84 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCHHHHHHHHHHHhCCCcc
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAARQRVVVQKKWHTGDVQ 114 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~ 114 (242)
..-++||++.....+.+.+.++. +.+ +..+..+++..+..++.+.-++..++
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDA--GIRLVVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHT--TCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred CCEEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 45688999887766666666654 777 66678899887766666665544443
No 200
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=26.56 E-value=1e+02 Score=24.73 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCHHHHHHHHHHHhCCCcc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAARQRVVVQKKWHTGDVQ 114 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~ 114 (242)
...-++||++.....+.+.+.++. +.+ +..+..+++..+..++.+.-++..++
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAIDA--GIELIVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEccCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 345688899887666666666654 777 66678899887766666666544443
No 201
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=26.10 E-value=41 Score=28.98 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
..++++|||.+-..+...+..|+.. |+ ++..|.|++.
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~-G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAH-GVGDVRNMVGGYE 463 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHH-TCSSEEEETTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEecChHH
Confidence 4568999999999999999999875 77 4888988854
No 202
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.68 E-value=98 Score=24.40 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 71 KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 71 ~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
.++++.|.+.|+. +|+.|. .+..++..+-.+.+++|...
T Consensus 43 ~~D~~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 43 NVDCENLTRVLKQ-LDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CCHHHHHHHHHHH-TTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHH-CCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 3678999999987 699876 45578888888899999853
No 203
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=25.45 E-value=48 Score=29.05 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
+..++++||.+-..+...+..|... |+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~-G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNN-GYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHT-TCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHc-CCCEEEEcChHH
Confidence 4568999999999999999999875 889999999864
No 204
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=25.24 E-value=1.1e+02 Score=21.83 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccc-CCCcEEEEeCchHHHHHHHHHHhhhCCCcEE--EEcCCCCHHHHHHHHHHHhCCCccEEEEecccc
Q 026168 47 ALKQIGQLIKDRF-KDQCGIIYCLSKNECVEVSNFLNQKCKIKTV--YYHAGLAARQRVVVQKKWHTGDVQIVCATIAFG 123 (242)
Q Consensus 47 ~~~~l~~~l~~~~-~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~--~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 123 (242)
......+++.+.. .+.+++|.|.+.+.++.|-+.|-..-..... .+-|.-. .....|+++++...
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~------------~~~~PV~L~~~~~~ 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP------------RGGAPVEIAWPQKR 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS------------TTCCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC------------CCCCCEEEeCCCCC
Confidence 4455556665433 5779999999999999999999762122222 2222211 12457899875421
Q ss_pred ccccccCccEEEEeCC
Q 026168 124 MGIDKPDVRFVIHNTL 139 (242)
Q Consensus 124 ~Gid~p~v~~Vi~~~~ 139 (242)
.-+.-+++||.+.
T Consensus 92 ---~~~~~~vLinL~~ 104 (150)
T 3sxu_A 92 ---SSSRRDILISLRT 104 (150)
T ss_dssp ---CCSCCSEEEECCS
T ss_pred ---CCCcCCEEEECCC
Confidence 1123557888764
No 205
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=24.87 E-value=20 Score=17.59 Aligned_cols=9 Identities=67% Similarity=1.069 Sum_probs=6.7
Q ss_pred HhhccCCCC
Q 026168 149 ESGRAGRDN 157 (242)
Q Consensus 149 r~GR~gR~g 157 (242)
-.||+||.+
T Consensus 8 ~~~RtGRRN 16 (26)
T 1cmk_I 8 ASGRTGRRN 16 (26)
T ss_pred hcCcccccc
Confidence 358999874
No 206
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=24.39 E-value=1.6e+02 Score=23.24 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=37.4
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhC
Q 026168 61 DQCGIIYCLS--------------KNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHT 110 (242)
Q Consensus 61 ~~~~iIF~~~--------------~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 110 (242)
.+-+||+.+. ..+++.|.+.|+. +|+.|. .|..++..+-.+.+++|..
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~-LgF~V~-~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSS-LHFMVE-VKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHH-TTEEEE-EEESCCHHHHHHHHHHHHH
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHH-CCCEEE-EEcCCCHHHHHHHHHHHHH
Confidence 3456777664 3589999999987 699876 4568889999999999974
No 207
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=23.91 E-value=39 Score=28.30 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=30.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCCH
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLAA 98 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~~ 98 (242)
..++++||.+-..+...+..|.. .|+ ++..|.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~-~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHH-LGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHH-TTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHH-cCCCCeeEeCChHHH
Confidence 67899999998888888888876 487 48888898754
No 208
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=23.66 E-value=42 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=29.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~~ 97 (242)
...++++||.+-..+...+..|.. .|+ ++..|.|++.
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~-~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYL-CGKPDVPIYDGSWV 290 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHT-TTCCCCCEESSHHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHH-cCCCCeeEeCCcHH
Confidence 456899999998888888888876 477 6788888854
No 209
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=23.59 E-value=79 Score=26.75 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCC-cEEEEcCCC
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKI-KTVYYHAGL 96 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~-~~~~~h~~~ 96 (242)
...++++||.+-..+...+..|.. .|+ ++..|.|++
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~-~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARA-MGWKNVSVYDGGW 393 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHH-TTCSSEEEESSHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHH-cCCCCcceeCccH
Confidence 456899999999888888888887 477 588888884
No 210
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=23.50 E-value=1.3e+02 Score=20.67 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=31.9
Q ss_pred eCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHH
Q 026168 68 CLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKW 108 (242)
Q Consensus 68 ~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f 108 (242)
|.+++.+..+..+|... ++....+.=.+++..|.+..+..
T Consensus 13 c~~kk~c~~aK~lL~~k-gV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEAN-KIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHC-CCceEEEECCCCHHHHHHHHHhc
Confidence 34567788999999885 88888888788888888877776
No 211
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=23.45 E-value=2e+02 Score=22.93 Aligned_cols=40 Identities=8% Similarity=0.104 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 70 SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 70 ~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+..+++.|.+.|+. +|+.|. .+..++..+-.+.+++|...
T Consensus 67 t~~D~~~L~~~f~~-LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRN-LKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHH-TTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHH-CCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 34589999999987 699876 55678999999999999854
No 212
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=23.45 E-value=1.3e+02 Score=22.14 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=36.7
Q ss_pred CcEEEEeC--------------chHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCC
Q 026168 62 QCGIIYCL--------------SKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTG 111 (242)
Q Consensus 62 ~~~iIF~~--------------~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 111 (242)
+.+|||.+ +..+++.|...|.. +|+.|..+ ..++..+-.+.++.|...
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~-LgF~V~v~-~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRS-LGFDVIVY-NDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHH-HTEEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHH-CCCEEEEE-eCCCHHHHHHHHHHHHHh
Confidence 45788775 34678899999987 69988655 578888888889988754
No 213
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=23.37 E-value=36 Score=23.39 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.8
Q ss_pred CCcEEEEeCchHHH---------HHHHHHHhhhCCCcEEEEcCCC
Q 026168 61 DQCGIIYCLSKNEC---------VEVSNFLNQKCKIKTVYYHAGL 96 (242)
Q Consensus 61 ~~~~iIF~~~~~~~---------~~l~~~L~~~~~~~~~~~h~~~ 96 (242)
..+++|||.+-..+ ..++..|... |+++..+.||+
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~-G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE-GKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHT-TCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHc-CCcEEEEccCH
Confidence 46799999886543 4566777764 77888999985
No 214
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=22.94 E-value=2.7e+02 Score=21.66 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=42.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHH-HHHHHHh--CCCccEEEEecc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRV-VVQKKWH--TGDVQIVCATIA 121 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~-~~~~~f~--~g~~~vlvaT~~ 121 (242)
.+-++++.-.+.+.++++++.++.. +.++..+..+++..+.. ...+... -|.++|||..-.
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4556777777778888999999774 88899999998765432 2222221 288999997653
No 215
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=22.74 E-value=1.1e+02 Score=21.57 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccCCCc-EEEEe-CchHHHHHHH----HHHhhhCCC---cEEEEcCCCCH
Q 026168 48 LKQIGQLIKDRFKDQC-GIIYC-LSKNECVEVS----NFLNQKCKI---KTVYYHAGLAA 98 (242)
Q Consensus 48 ~~~l~~~l~~~~~~~~-~iIF~-~~~~~~~~l~----~~L~~~~~~---~~~~~h~~~~~ 98 (242)
+..+...+.. ...+ +|+|| .+-..+...+ ..|... |+ .+..+.||+..
T Consensus 56 ~~~l~~~l~~--~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~-G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 56 YEKLAKTLFE--EKKELAVFHCAQSLVRAPKGANRFALAQKKL-GYVLPAVYVLRGGWEA 112 (152)
T ss_dssp HHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHHHHHHHHHHH-TCCCSEEEEETTHHHH
T ss_pred HHHHHHHhcc--cCCCEEEEEcCCCCCccHHHHHHHHHHHHHc-CCCCCCEEEEcCcHHH
Confidence 4444444432 2334 45559 4544443333 667664 75 68889998643
No 216
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=21.87 E-value=1.3e+02 Score=24.94 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=26.8
Q ss_pred CCCcEEEEe-CchHHH-HHHHHHHhhhCCCcEEEEcCCCC
Q 026168 60 KDQCGIIYC-LSKNEC-VEVSNFLNQKCKIKTVYYHAGLA 97 (242)
Q Consensus 60 ~~~~~iIF~-~~~~~~-~~l~~~L~~~~~~~~~~~h~~~~ 97 (242)
...+++||| .+-... ..++..|+.. |+++..+.||+.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~-G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSL-GADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHH-TCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc-CCeEEEeCCCHH
Confidence 457899999 443233 4777888774 778999999974
No 217
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=21.39 E-value=84 Score=27.36 Aligned_cols=76 Identities=11% Similarity=-0.016 Sum_probs=52.8
Q ss_pred HHHHHHHHhcccCCCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEEEEecccccccc
Q 026168 48 LKQIGQLIKDRFKDQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIVCATIAFGMGID 127 (242)
Q Consensus 48 ~~~l~~~l~~~~~~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gid 127 (242)
+..|..+++. .+.+++|.+.+...++.+.+.|.+. ++.+...... . .+..| .|.|+...+..|.-
T Consensus 371 ~~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~-~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 371 LDALRKFLET--FDGPVVFSVESEGRREALGELLARI-KIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp THHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGG-TCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHc-CCCceecCch-h---------hcCCC--cEEEEEcccccCcc
Confidence 4566666642 3568999999999999999999874 6654433221 0 12334 56677778999999
Q ss_pred ccCccEEEEeC
Q 026168 128 KPDVRFVIHNT 138 (242)
Q Consensus 128 ~p~v~~Vi~~~ 138 (242)
+|+.+++|..+
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888877643
No 218
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=20.52 E-value=1.8e+02 Score=25.26 Aligned_cols=54 Identities=4% Similarity=0.177 Sum_probs=36.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhhhCCCcEEEEcCCCCHHHHHHHHHHHhCCCccEE
Q 026168 61 DQCGIIYCLSKNECVEVSNFLNQKCKIKTVYYHAGLAARQRVVVQKKWHTGDVQIV 116 (242)
Q Consensus 61 ~~~~iIF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 116 (242)
..-++|+++-....+.+.+.... |.++..+.++.+.....++.+.-+....++|
T Consensus 37 ~DlavI~vPa~~v~~~v~e~~~~--Gv~~viis~Gf~~~~~~~l~~~A~~~g~rli 90 (480)
T 3dmy_A 37 ANLALISVAGEYAAELANQALDR--NLNVMMFSDNVTLEDEIQLKTRAREKGLLVM 90 (480)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHT--TCEEEECCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEecCHHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45678888887777777777765 6677778888886655555555555545443
No 219
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=20.07 E-value=1.7e+02 Score=23.39 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=34.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhhhCCCc-EEEEcCCCCHHHHHHHHHHHhCCCcc
Q 026168 60 KDQCGIIYCLSKNECVEVSNFLNQKCKIK-TVYYHAGLAARQRVVVQKKWHTGDVQ 114 (242)
Q Consensus 60 ~~~~~iIF~~~~~~~~~l~~~L~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~g~~~ 114 (242)
...-++||++.....+.+.+.+.. +.+ +..+..+++..+..++.+.-+...++
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~--Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHA--GIPLIVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHT--TCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEecCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 345678888876655555555553 777 66778889887766666655544443
Done!