BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026171
MMTSNQLTAIARGEANTSFAFSTRNTVEAKWVRQIKMSSPNPNVKKANLSATKKERIELP
INYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNF
EAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEV
EVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWVQQKFEE
FA

High Scoring Gene Products

Symbol, full name Information P value
AT4G31115 protein from Arabidopsis thaliana 3.1e-44
AT5G04440 protein from Arabidopsis thaliana 2.6e-15

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026171
        (242 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716370 - symbol:AT4G31115 species:3702 "Ar...   466  3.1e-44   1
TAIR|locus:2184377 - symbol:AT5G04440 "AT5G04440" species...   193  2.6e-15   1


>TAIR|locus:1005716370 [details] [associations]
            symbol:AT4G31115 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] EMBL:CP002687 EMBL:AL161578
            UniGene:At.31771 UniGene:At.44014 IPI:IPI00891853
            RefSeq:NP_001119084.1 PRIDE:B3H5W4 EnsemblPlants:AT4G31115.2
            GeneID:829239 KEGG:ath:AT4G31115 TAIR:At4g31115 eggNOG:NOG294453
            HOGENOM:HOG000064647 OMA:PGNLVMQ PhylomeDB:B3H5W4
            ProtClustDB:CLSN2680195 Genevestigator:B3H5W4 InterPro:IPR018971
            Pfam:PF09366 Uniprot:B3H5W4
        Length = 274

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 94/197 (47%), Positives = 129/197 (65%)

Query:    43 NVKKANLSATKKERIELPINYDYDGNCGSKAKAYHISEFLSHPSGIQAMLNTSALQSFQF 102
             ++KKAN+SA++K+RI+L IN       G K   +  SEFL HPSG++A++N  ALQS+  
Sbjct:    78 SLKKANISASRKQRIKLEIN-------GEKELTF--SEFLKHPSGMEAVINAKALQSYHL 128

Query:   103 LDTN--TYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFS 160
             +D +  TYRC LPKVQ ++FE  PV+ LRVTPT +DCTV+LLSCK EGS+++E+Q++RFS
Sbjct:   129 VDDSDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQEDCTVELLSCKLEGSELLENQSERFS 188

Query:   161 AFMINHMTWNTNDSESFXXXXXXXXXXXXIYTRPFSLLPISAVERPGNLMMQAXXXXXXX 220
             A M N MTWN    E F            I TRPF++LP+SAVE PGNL+MQ        
Sbjct:   189 AIMTNCMTWNMEHPEPFLEVDVRLNVTLEISTRPFTMLPVSAVEAPGNLVMQTLVDTLVP 248

Query:   221 XXXXXXXXXYDKWVQQK 237
                      YD+W++++
Sbjct:   249 LLLQQLLKDYDEWIKKQ 265


>TAIR|locus:2184377 [details] [associations]
            symbol:AT5G04440 "AT5G04440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009507 InterPro:IPR018971
            Pfam:PF09366 EMBL:BT022095 EMBL:BT024482 IPI:IPI00525146
            RefSeq:NP_196064.2 UniGene:At.33125 ProteinModelPortal:Q500X2
            STRING:Q500X2 PaxDb:Q500X2 PRIDE:Q500X2 EnsemblPlants:AT5G04440.1
            GeneID:830323 KEGG:ath:AT5G04440 TAIR:At5g04440 eggNOG:NOG284302
            InParanoid:Q500X2 OMA:VYRFRFF PhylomeDB:Q500X2
            ProtClustDB:CLSN2690780 Genevestigator:Q500X2 Uniprot:Q500X2
        Length = 255

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/134 (30%), Positives = 71/134 (52%)

Query:    80 EFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTV 139
             E++S P+   ++L+   ++    +D NT+RC +   +F NFE  PV+ +RV      C +
Sbjct:    88 EYMSLPASQYSVLDAERIER---VDDNTFRCYVYTFKFFNFEVCPVLLVRVEEQPNGCCI 144

Query:   140 QLLSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFXXXXXXXXXXXXIYTRPFS--L 197
             +LLSCK EGS +V +QND+F A M+N ++ ++    S                 PF+  +
Sbjct:   145 KLLSCKLEGSPVVVAQNDKFDASMVNRVSCDSTQEGSSEQQITSDAVIEVNIEIPFAFRV 204

Query:   198 LPISAVERPGNLMM 211
              P+ A+E  G  ++
Sbjct:   205 FPVGAIEATGTQVL 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.129   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       214   0.00085  112 3  11 22  0.36    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  182 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.12u 0.14s 17.26t   Elapsed:  00:00:01
  Total cpu time:  17.12u 0.14s 17.26t   Elapsed:  00:00:01
  Start:  Tue May 21 02:41:06 2013   End:  Tue May 21 02:41:07 2013

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