BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026171
         (242 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31525|Y1590_SYNP2 Uncharacterized protein SYNPCC7002_A1590 OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6)
           GN=SYNPCC7002_A1590 PE=4 SV=2
          Length = 192

 Score = 32.0 bits (71), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 106 NTYRCVLPKVQFLN-FEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQNDRFSAFMI 164
           + Y+  +  + FL+ ++  P++ L++   D+   V + S  ++   + E     F   + 
Sbjct: 48  DQYQLKMRPIGFLDLYKFQPIVTLKIW-CDRHYQVHIKSLDYQLRGL-EPFMKGFKLDVT 105

Query: 165 NHMTWNTNDSESFL-EVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLL 223
             +    ++ E +L E E  L++ LE+   P    P + V++ G+ +++ ++ R+   LL
Sbjct: 106 GRLQPIADEQEQWLLEGEADLQVKLEL-PPPLWFTPKALVKKTGDRLLREILQRIKGQLL 164

Query: 224 RQLLQDYDKW 233
            QL++DY  W
Sbjct: 165 DQLVRDYQVW 174


>sp|P75112|YIDC_MYCPN Membrane protein insertase YidC OS=Mycoplasma pneumoniae (strain
           ATCC 29342 / M129) GN=yidC PE=3 SV=1
          Length = 385

 Score = 30.8 bits (68), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 142 LSCKFEGSDIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPIS 201
           ++ K++G+  ++S+ +R    M  +   N   S SF++V V L + L IY    +L PI 
Sbjct: 189 INAKYKGALDLQSKRNRQMEIMSLYKKHNIKSSASFVQVFVTLPIFLIIYRIVTTLRPIK 248

Query: 202 AV 203
           A+
Sbjct: 249 AI 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,608,321
Number of Sequences: 539616
Number of extensions: 3276865
Number of successful extensions: 6791
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6785
Number of HSP's gapped (non-prelim): 11
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)