Query 026171
Match_columns 242
No_of_seqs 119 out of 155
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09366 DUF1997: Protein of u 100.0 7.4E-46 1.6E-50 310.6 18.6 156 76-236 2-158 (158)
2 PF06240 COXG: Carbon monoxide 97.9 0.00022 4.7E-09 58.1 10.8 128 76-221 10-138 (140)
3 cd07823 SRPBCC_5 Ligand-bindin 97.3 0.013 2.7E-07 47.4 13.4 133 75-222 11-144 (146)
4 cd05018 CoxG Carbon monoxide d 96.5 0.15 3.2E-06 39.8 13.2 129 76-222 14-143 (144)
5 COG3427 Carbon monoxide dehydr 94.5 0.88 1.9E-05 38.4 11.6 126 76-227 14-140 (146)
6 PF10604 Polyketide_cyc2: Poly 67.6 51 0.0011 24.9 12.8 31 76-108 15-46 (139)
7 cd08861 OtcD1_ARO-CYC_like N-t 67.0 57 0.0012 25.2 10.4 126 76-222 12-140 (142)
8 PHA02135 hypothetical protein 59.6 7.6 0.00017 31.1 2.3 23 217-239 68-90 (122)
9 cd08871 START_STARD10-like Lip 59.5 1.2E+02 0.0025 26.2 11.6 145 76-241 61-214 (222)
10 cd07824 SRPBCC_6 Ligand-bindin 53.0 39 0.00084 26.9 5.5 40 181-221 102-145 (146)
11 cd08862 SRPBCC_Smu440-like Lig 47.6 1.2E+02 0.0026 22.9 12.3 37 76-114 14-55 (138)
12 cd08904 START_STARD6-like Lipi 45.3 2.1E+02 0.0046 25.0 10.6 65 76-143 59-129 (204)
13 PF11485 DUF3211: Protein of u 40.5 29 0.00064 28.9 3.0 43 76-125 14-58 (136)
14 PRK02899 adaptor protein; Prov 31.3 35 0.00076 29.8 2.1 45 98-142 1-77 (197)
15 cd08866 SRPBCC_11 Ligand-bindi 26.0 3E+02 0.0066 21.1 12.2 26 197-222 117-142 (144)
16 PRK02315 adaptor protein; Prov 24.0 56 0.0012 29.2 2.1 45 98-142 1-76 (233)
17 PF15264 TSSC4: Tumour suppres 24.0 31 0.00068 27.9 0.5 19 76-94 52-72 (115)
18 PF03364 Polyketide_cyc: Polyk 22.1 1.5E+02 0.0032 22.5 4.0 35 182-218 95-129 (130)
No 1
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=7.4e-46 Score=310.59 Aligned_cols=156 Identities=35% Similarity=0.611 Sum_probs=151.6
Q ss_pred cchHHHhcCCCce-EEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171 76 YHISEFLSHPSGI-QAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES 154 (242)
Q Consensus 76 ~~l~eYL~~p~r~-~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~ 154 (242)
++|++||++|+|| ++|+|++ ++|+||||+|||+|+|++||+|+|+|+|+|+|++++++|.+++.+|+|+|++.+++
T Consensus 2 ~~l~~YL~~~~r~~~~~~d~~---~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l~G~~~~~~ 78 (158)
T PF09366_consen 2 APLAEYLSDPQRWFSALFDPM---RIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCELRGSPLVEQ 78 (158)
T ss_pred CchHHHHhCchhHHHHhcCHH---HcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEEeCCCcccc
Confidence 6899999999999 9999997 99999999999999999999999999999999999999999999999999998877
Q ss_pred cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026171 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDYDKWV 234 (242)
Q Consensus 155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~~DY~~W~ 234 (242)
|.+|+++++|.|+|.+.++.+.++|+++|+|++++ |++|+++|++++|+|||+||++|+++|++||+++|++||++|+
T Consensus 79 -~~~f~l~~~~~l~~~~~~~~t~l~~~~~l~V~v~~-P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~l~~Dy~~w~ 156 (158)
T PF09366_consen 79 -NDGFSLDLQASLYPEEPPGRTRLEGDADLSVSVEL-PPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQLQADYHRWA 156 (158)
T ss_pred -CCcEEEEEEEEEEEecCCCceEEEEEEEEEEEEEc-ChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998899999999999999999 9999999999999999999999999999999999999999998
Q ss_pred Hh
Q 026171 235 QQ 236 (242)
Q Consensus 235 ~~ 236 (242)
++
T Consensus 157 ~~ 158 (158)
T PF09366_consen 157 RE 158 (158)
T ss_pred hC
Confidence 74
No 2
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.86 E-value=0.00022 Score=58.12 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=75.4
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES 154 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~ 154 (242)
..+-++|.||+.+.+|++-= ..+|.+| +.|+.++. +++++..++ ...+++...++...+. .++.|.+.
T Consensus 10 ~~vw~~l~D~~~l~~ciPG~--~~~e~~~-~~~~~~~~v~vG~i~~~~--~g~~~~~~~~~~~~~~---~~~~g~g~--- 78 (140)
T PF06240_consen 10 EKVWAFLSDPENLARCIPGV--ESIEKVG-DEYKGKVKVKVGPIKGTF--DGEVRITEIDPPESYT---LEFEGRGR--- 78 (140)
T ss_dssp HHHHHHHT-HHHHHHHSTTE--EEEEEEC-TEEEEEEEEESCCCEEEE--EEEEEEEEEETTTEEE---EEEEEEEC---
T ss_pred HHHHHHhcCHHHHHhhCCCc--EEeeecC-cEEEEEEEEEeccEEEEE--EEEEEEEEcCCCcceE---eeeeccCC---
Confidence 67899999999998888764 5899999 99998887 666666666 4444443322332222 34445442
Q ss_pred cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHH
Q 026171 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPL 221 (242)
Q Consensus 155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~r 221 (242)
...++++..-.+.....++ +.+.++++++ + ..++..+..++++.+.+.+++++...+...
T Consensus 79 -~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~----~-~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 79 -GGGSSASANITLSLEDDGG-TRVTWSADVE----V-GGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp -TCCEEEEEEEEEEECCCTC-EEEEEEEEEE----E-ECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccceEEEEEEEEEcCCCCC-cEEEEEEEEE----E-ccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333333344333333 6777776554 5 455665666666666666666666655544
No 3
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.26 E-value=0.013 Score=47.37 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=76.3
Q ss_pred ccchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcC-CCCeEEEEeeEEeCCcccc
Q 026171 75 AYHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTD-KDCTVQLLSCKFEGSDIVE 153 (242)
Q Consensus 75 ~~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~-~~~~v~l~sc~l~G~~~v~ 153 (242)
+..+=++|.||+++-+|.+.- ..++.+++++|+.++ ++++.++...=...+++...+ .+..+.+. ..|.+.-
T Consensus 11 pe~vw~~l~D~~~~~~~~pg~--~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~- 83 (146)
T cd07823 11 PDRVWALLLDIERVAPCLPGA--SLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAARRAVLE---ATGKDAR- 83 (146)
T ss_pred HHHHHHHhcCHHHHHhcCCCc--eeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCcEEEEE---EEEecCC-
Confidence 478999999999997787643 378888999998776 445544443333444554433 33344332 2232100
Q ss_pred ccccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171 154 SQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL 222 (242)
Q Consensus 154 ~~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl 222 (242)
.. ......+.-.|.+ .++.+.+.++++++++.-+ ..+...++++..+.++++.++.++.++
T Consensus 84 ~~-g~~~~~~~~~l~~--~~~gT~v~~~~~~~~~g~l-----~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 84 GQ-GTAEATVTLRLSP--AGGGTRVTVDTDLALTGKL-----AQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred Cc-ceEEEEEEEEEEe--cCCcEEEEEEEEEEEeeEh-----HHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0112222222443 3456777777766554444 445567777777777777777777664
No 4
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.46 E-value=0.15 Score=39.83 Aligned_cols=129 Identities=10% Similarity=0.145 Sum_probs=70.8
Q ss_pred cchHHHhcCCCceEEec-CCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171 76 YHISEFLSHPSGIQAML-NTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES 154 (242)
Q Consensus 76 ~~l~eYL~~p~r~~all-dp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~ 154 (242)
..+-++|.|++.+..++ ..+ .++.++++.|.+.+. .++..+...=....++...+.+..+.+.. .|.+.
T Consensus 14 e~v~~~l~D~~~~~~w~p~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 83 (144)
T cd05018 14 EEVWAALNDPEVLARCIPGCE---SLEKIGPNEYEATVK-LKVGPVKGTFKGKVELSDLDPPESYTITG---EGKGG--- 83 (144)
T ss_pred HHHHHHhcCHHHHHhhccchh---hccccCCCeEEEEEE-EEEccEEEEEEEEEEEEecCCCcEEEEEE---EEcCC---
Confidence 67899999999995555 444 788888888877653 22221111111233443323333333331 22110
Q ss_pred cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL 222 (242)
Q Consensus 155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl 222 (242)
..+ ..+.+..+....++++.++.. +.+++ +.++..+|..++......++++.++.|+.++
T Consensus 84 --~~~-~~~~~~~~l~~~~~gT~v~~~----~~~~~-~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 84 --AGF-VKGTARVTLEPDGGGTRLTYT----ADAQV-GGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred --Cce-EEEEEEEEEEecCCcEEEEEE----EEEEE-ccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011 122322333223334444444 44445 5677788888888888888888888887764
No 5
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=94.51 E-value=0.88 Score=38.36 Aligned_cols=126 Identities=11% Similarity=0.123 Sum_probs=70.2
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEE-cCCCCeEEEEeeEEeCCccccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTP-TDKDCTVQLLSCKFEGSDIVES 154 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~-~~~~~~v~l~sc~l~G~~~v~~ 154 (242)
..+-++|.+|+...+|++-= +.+|..|| +|.+++. +++=-+.-+=-.-++... .+.... ..+.|.+--..
T Consensus 14 e~Vw~~L~dpe~~a~ciPG~--qs~e~~g~-e~~~~v~-l~ig~l~~~~~g~~~~~~v~~~~~~-----~~i~g~G~~~~ 84 (146)
T COG3427 14 EAVWEFLNDPEQVAACIPGV--QSVETNGD-EYTAKVK-LKIGPLKGTFSGRVRFVNVDEPPRS-----ITINGSGGGAA 84 (146)
T ss_pred HHHHHHhcCHHHHHhhcCCc--ceeeecCC-eEEEEEE-EeecceeEEEEEEEEEccccCCCcE-----EEEEeeccccc
Confidence 56889999999998888874 68998888 8887764 222222222222222222 223333 33444430000
Q ss_pred cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026171 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLL 227 (242)
Q Consensus 155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~ 227 (242)
=..++.+ ...-...+.++.+.|.++.++.. ++...|..+|+.+++.+..+|-+.|.
T Consensus 85 g~~~~~~----~v~l~~~g~gt~v~w~~~~~~gg-------------~laqlGsr~i~~~~~kli~~~~~~l~ 140 (146)
T COG3427 85 GFADGTV----DVQLEPSGEGTRVNWFADANVGG-------------KLAQLGSRLIDSVARKLINRFFDCLS 140 (146)
T ss_pred ceeeeee----EEEEEEcCCCcEEEEEEEccccH-------------HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0112222 23333334458898888776653 44466777777777766666655543
No 6
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=67.56 E-value=51 Score=24.90 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=20.9
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEcc-CCeE
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLD-TNTY 108 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lg-d~~f 108 (242)
..+=+|++++..+..-.+. +..++.++ ++.+
T Consensus 15 e~V~~~l~d~~~~~~w~~~--~~~~~~~~~~~~~ 46 (139)
T PF10604_consen 15 EAVWDLLSDPENWPRWWPG--VKSVELLSGGGPG 46 (139)
T ss_dssp HHHHHHHTTTTGGGGTSTT--EEEEEEEEECSTE
T ss_pred HHHHHHHhChhhhhhhhhc--eEEEEEccccccc
Confidence 6789999999999543332 24677776 5553
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=66.98 E-value=57 Score=25.22 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=60.9
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEcc--CCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCcccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLD--TNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVE 153 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lg--d~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~ 153 (242)
..+=+|++|++++-...+.. .++.++ ++.-++.+-+.++-|....-+.... ..+++..|........|.
T Consensus 12 ~~V~~~l~D~~~~p~~~p~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~i~~~~~~~~~~---- 82 (142)
T cd08861 12 EDVYDLLADAERWPEFLPTV---HVERLELDGGVERLRMWATAFDGSVHTWTSRRV--LDPEGRRIVFRQEEPPPP---- 82 (142)
T ss_pred HHHHHHHHhHHhhhccCCCc---eEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEE--EcCCCCEEEEEEeeCCCC----
Confidence 67889999999984433322 444443 3333344333333333332222111 212233343332211121
Q ss_pred ccccceeeeEEEEEEEeecC-CCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171 154 SQNDRFSAFMINHMTWNTND-SESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL 222 (242)
Q Consensus 154 ~~n~~F~l~m~~~L~~~~~~-~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl 222 (242)
| ..+.|..+....+ +. ..+.+.+.+++ +.++- ++..+++..-+..++..|+.++.+.
T Consensus 83 -----~-~~~~g~w~~~~~~~~~----t~Vt~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 83 -----V-ASMSGEWRFEPLGGGG----TRVTLRHDFTL-GIDSP-EAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred -----h-hhheeEEEEEECCCCc----EEEEEEEEEEE-CCCCc-hhHHHHHHHHccccHHHHHHHHHHh
Confidence 1 1133333333322 22 34555555555 33322 6777888888888888888887764
No 8
>PHA02135 hypothetical protein
Probab=59.56 E-value=7.6 Score=31.10 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 026171 217 RLVPLLLRQLLQDYDKWVQQKFE 239 (242)
Q Consensus 217 ~i~~rl~~qL~~DY~~W~~~q~~ 239 (242)
-+.+|..+.+..||++||++..-
T Consensus 68 f~~~ry~~e~~~d~r~wc~~npg 90 (122)
T PHA02135 68 FFIQRYNKENNKDWRKWCRENPG 90 (122)
T ss_pred HHHHHhhhhhhhHHHHHHhcCCC
Confidence 46789999999999999998643
No 9
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=59.47 E-value=1.2e+02 Score=26.25 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=70.6
Q ss_pred cchHHHhcCC---Cce-EEecCCCcCcceEEccCCeEEEEecCcee-EeEEEEEEEEEEEEEcCCCCeEEEE--eeEEeC
Q 026171 76 YHISEFLSHP---SGI-QAMLNTSALQSFQFLDTNTYRCVLPKVQF-LNFEAAPVMDLRVTPTDKDCTVQLL--SCKFEG 148 (242)
Q Consensus 76 ~~l~eYL~~p---~r~-~alldp~~~~rie~Lgd~~fRl~l~~~~f-f~~eVePvv~lrV~~~~~~~~v~l~--sc~l~G 148 (242)
..+-++|.++ ..| ..|...+ .++.++++...++.. +++ +.+.-.=.|.++.+-..+ +.+.+. ++.-..
T Consensus 61 e~~~~~l~D~~~r~~Wd~~~~e~~---~ie~~d~~~~i~y~~-~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~ 135 (222)
T cd08871 61 ETLYDVLHDPEYRKTWDSNMIESF---DICQLNPNNDIGYYS-AKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK 135 (222)
T ss_pred HHHHHHHHChhhhhhhhhhhceeE---EEEEcCCCCEEEEEE-eECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCC
Confidence 4566777775 333 4566665 789998775543321 111 112222234455554333 443333 443222
Q ss_pred Cccccccccce-eeeE-EEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHH
Q 026171 149 SDIVESQNDRF-SAFM-INHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQL 226 (242)
Q Consensus 149 ~~~v~~~n~~F-~l~m-~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL 226 (242)
.+ .+..+ ...+ .+.......+. +.+.++..+.. .|=-.||..++..++....-..+..| .+.
T Consensus 136 ~P----~~~g~VR~~~~~~g~~i~p~~~-----~~t~vt~~~~~--Dp~G~IP~~lvN~~~~~~~~~~l~~l-----~k~ 199 (222)
T cd08871 136 YP----PRKGFVRAISLLTGYLIRPTGP-----KGCTLTYVTQN--DPKGSLPKWVVNKATTKLAPKVMKKL-----HKA 199 (222)
T ss_pred CC----CCCCeEEeEEEccEEEEEECCC-----CCEEEEEEEec--CCCCCcCHHHHHHHHHHHhHHHHHHH-----HHH
Confidence 22 11121 2221 11111111111 12333333333 22235787777776665555555544 467
Q ss_pred HHHHHHHHHhhhhhc
Q 026171 227 LQDYDKWVQQKFEEF 241 (242)
Q Consensus 227 ~~DY~~W~~~q~~~~ 241 (242)
++.|..|+..+..||
T Consensus 200 ~~~y~~~~~~~~~~~ 214 (222)
T cd08871 200 ALKYPEWKAKNNPEF 214 (222)
T ss_pred HHHHHHHHHhcCCCC
Confidence 789999999998886
No 10
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=52.96 E-value=39 Score=26.86 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=27.6
Q ss_pred EEEEEEEEEEeCC----cceecchhhhhchHHHHHHHHHHHHHHH
Q 026171 181 EVKLKLCLEIYTR----PFSLLPISAVERPGNLMMQALVDRLVPL 221 (242)
Q Consensus 181 ~~~L~V~v~l~P~----pf~llP~~lle~tGn~vL~~IL~~i~~r 221 (242)
.+.+...++. +. ++..++.+++......+|+.++..++.+
T Consensus 102 ~vt~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 102 VVRYDWEVRT-TKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEEEEEEc-CHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 4566666666 55 4666777777777777777777777765
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=47.65 E-value=1.2e+02 Score=22.93 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=25.3
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCC-----eEEEEecC
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTN-----TYRCVLPK 114 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~-----~fRl~l~~ 114 (242)
..+=+|+.+++.+....+.- ..++.+++. .|++..+.
T Consensus 14 ~~Vw~~~~d~~~~~~w~~~~--~~~~~~~~~~~~G~~~~~~~~~ 55 (138)
T cd08862 14 ERVWAVLTDVENWPAWTPSV--ETVRLEGPPPAVGSSFKMKPPG 55 (138)
T ss_pred HHHHHHHHhhhhcccccCcc--eEEEEecCCCCCCcEEEEecCC
Confidence 67889999998885444431 267777655 78777653
No 12
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=45.34 E-value=2.1e+02 Score=25.02 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=42.4
Q ss_pred cchHHHhcCCC---ce-EEecCCCcCcceEEccCCeEEEEecCceeE-e-EEEEEEEEEEEEEcCCCCeEEEEe
Q 026171 76 YHISEFLSHPS---GI-QAMLNTSALQSFQFLDTNTYRCVLPKVQFL-N-FEAAPVMDLRVTPTDKDCTVQLLS 143 (242)
Q Consensus 76 ~~l~eYL~~p~---r~-~alldp~~~~rie~Lgd~~fRl~l~~~~ff-~-~eVePvv~lrV~~~~~~~~v~l~s 143 (242)
..+-+||.++. .| ..|...+ -+|+++++++.++-..-++. + +.=.=.|+++-|-..+++.+.+.+
T Consensus 59 e~v~~~l~~~e~r~~Wd~~~~~~~---iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~ 129 (204)
T cd08904 59 AKLIQFMYQPEHRIKWDKSLQVYK---MLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSS 129 (204)
T ss_pred HHHHHHHhccchhhhhccccccee---eEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEE
Confidence 56778888873 33 5677776 89999999998885544433 2 233336777776544556655543
No 13
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=40.46 E-value=29 Score=28.94 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=33.0
Q ss_pred cchHHHhcCCCce-EEecCC-CcCcceEEccCCeEEEEecCceeEeEEEEEE
Q 026171 76 YHISEFLSHPSGI-QAMLNT-SALQSFQFLDTNTYRCVLPKVQFLNFEAAPV 125 (242)
Q Consensus 76 ~~l~eYL~~p~r~-~alldp-~~~~rie~Lgd~~fRl~l~~~~ff~~eVePv 125 (242)
..|..+|+||.=. ..++++ + .++ .+++.|+|... |+++.++-.
T Consensus 14 e~v~~ILSDP~F~lp~l~p~ik---~v~-~~~~sF~~~g~---~~~~~~~~~ 58 (136)
T PF11485_consen 14 EVVLTILSDPEFVLPRLFPPIK---SVK-VEENSFRAEGK---FGGFPFEMK 58 (136)
T ss_dssp HHHHHHHT-HHHHHHHHSTTEE---EEE--STTEEEEEEE---ETTEEEEEE
T ss_pred HheEEEecCCccEecccCCceE---EEE-ecCCEEEEEEE---EeeEEEEEE
Confidence 6799999999988 999999 6 777 99999999988 444444333
No 14
>PRK02899 adaptor protein; Provisional
Probab=31.29 E-value=35 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=31.7
Q ss_pred cceEEccCCeEEEEecCcee-------------------------------EeEEEEEEEEEEEEEcC-CCCeEEEE
Q 026171 98 QSFQFLDTNTYRCVLPKVQF-------------------------------LNFEAAPVMDLRVTPTD-KDCTVQLL 142 (242)
Q Consensus 98 ~rie~Lgd~~fRl~l~~~~f-------------------------------f~~eVePvv~lrV~~~~-~~~~v~l~ 142 (242)
|++|++++|+.||++..-.. +||+..=-|.++|.|-+ +|..+.+.
T Consensus 1 MkiErInentIrv~it~~DL~eRgi~~~dL~~n~~k~e~lF~~mm~Ea~~e~~F~~~~pl~~qv~p~~~~gl~l~IT 77 (197)
T PRK02899 1 MRLERLNYNKIKIFLTFDDLSERGLTKEDLWRDAPKVHQLFRDMMQEANKELGFEADGPIAVEVFSLQAQGMVVIVT 77 (197)
T ss_pred CCeeEccCCeEEEEEeHHHHHHcCCCHHHHhcCcHHHHHHHHHHHHHhhhccCcccCCeEEEEEEecCCCcEEEEEE
Confidence 79999999999999864322 16766644888998876 44444444
No 15
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.04 E-value=3e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=-0.058 Sum_probs=17.7
Q ss_pred ecchhhhhchHHHHHHHHHHHHHHHH
Q 026171 197 LLPISAVERPGNLMMQALVDRLVPLL 222 (242)
Q Consensus 197 llP~~lle~tGn~vL~~IL~~i~~rl 222 (242)
.+|..++.......+..++.+|+.+.
T Consensus 117 ~~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 117 FAPVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777776554
No 16
>PRK02315 adaptor protein; Provisional
Probab=24.05 E-value=56 Score=29.23 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred cceEEccCCeEEEEecCceeE-------------------------------eEEEEEEEEEEEEEcCCCCeEEEE
Q 026171 98 QSFQFLDTNTYRCVLPKVQFL-------------------------------NFEAAPVMDLRVTPTDKDCTVQLL 142 (242)
Q Consensus 98 ~rie~Lgd~~fRl~l~~~~ff-------------------------------~~eVePvv~lrV~~~~~~~~v~l~ 142 (242)
|++||+++||-||++..-..- +|+..=-|.++|.|.++|..+.+.
T Consensus 1 MeiErInentIRv~it~~DL~eRGi~~~dL~~n~~k~e~fF~~mm~Ea~~e~~F~~~~pl~~qv~p~~~Glel~IT 76 (233)
T PRK02315 1 MEIERINENTIKVFITYDDLEERGFEREDLLYNREKIEEFFYSMMDEVDEEDDFADEGPLWFQVTPNEKGLEVFVT 76 (233)
T ss_pred CceEEecCCeEEEEecHHHHHHcCCCHHHHhcCcHHHHHHHHHHHHHhccccCcccCCeEEEEEEECCCCEEEEEE
Confidence 799999999999998643221 676664478899996554445444
No 17
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=24.04 E-value=31 Score=27.95 Aligned_cols=19 Identities=5% Similarity=0.263 Sum_probs=17.1
Q ss_pred cchHHHhcCCCce--EEecCC
Q 026171 76 YHISEFLSHPSGI--QAMLNT 94 (242)
Q Consensus 76 ~~l~eYL~~p~r~--~alldp 94 (242)
..+.+|+++|.+| |+|-|-
T Consensus 52 ~~vPDYv~nP~KwTkYSL~dv 72 (115)
T PF15264_consen 52 PGVPDYVRNPEKWTKYSLDDV 72 (115)
T ss_pred CCCCCCcCCcccceeeecCCC
Confidence 6799999999999 998775
No 18
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=22.12 E-value=1.5e+02 Score=22.54 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=19.5
Q ss_pred EEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHH
Q 026171 182 VKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRL 218 (242)
Q Consensus 182 ~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i 218 (242)
+.+.+.+++ .|-..+|..++...++..+.++++.+
T Consensus 95 ~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 95 TRVTYDYEV--DPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp EEEEEEEEE--ETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEE--ecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 334444444 33344566766666666666666655
Done!