Query 026171
Match_columns 242
No_of_seqs 119 out of 155
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9v_A Uncharacterized protein 95.8 0.15 5.1E-06 40.8 11.9 134 76-230 20-153 (161)
2 2ns9_A Hypothetical protein AP 93.1 2.2 7.7E-05 32.5 13.2 128 76-222 26-154 (157)
3 2pcs_A Conserved protein; stru 92.3 3.2 0.00011 32.1 13.4 129 76-223 16-147 (162)
4 3ggn_A Uncharacterized protein 81.3 17 0.00057 28.2 10.3 37 76-114 17-53 (155)
5 1t17_A Conserved hypothetical 69.8 33 0.0011 25.8 12.3 126 76-230 15-146 (148)
6 2yjl_A EXSB, exoenzyme S synth 19.0 1.2E+02 0.0041 23.7 4.0 50 89-151 34-85 (125)
7 2kha_A Beta-1,3-glucan-binding 18.1 1.3E+02 0.0044 23.7 4.1 36 84-123 6-44 (130)
8 3ie4_A GRAM-negative binding p 17.5 1.3E+02 0.0044 22.8 3.9 25 99-123 7-34 (107)
9 2kew_A Uncharacterized protein 14.0 1.1E+02 0.0039 23.0 2.8 34 76-112 23-56 (152)
10 2or7_A T-cell immunoglobulin a 13.3 1.2E+02 0.0042 21.2 2.7 31 99-132 80-110 (115)
No 1
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=95.79 E-value=0.15 Score=40.77 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=73.4
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCcccccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVESQ 155 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~~ 155 (242)
..+=+++.|.++|-++.+.= +-.+..+++.|+..+..+++-+..+.=....++...+++..|.++.. .|
T Consensus 20 e~v~~lv~Dve~w~~~yp~~--~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~~I~~~~~--~g------- 88 (161)
T 3p9v_A 20 DEVFDLLADVPKSASHFPKV--DKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAGKITWSPI--KG------- 88 (161)
T ss_dssp HHHHHHHTCHHHHHTTSTTE--EEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTTEEEEEEC--TT-------
T ss_pred HHHHHHHhChhhhHhhCCCe--EEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCCEEEEEEe--cC-------
Confidence 66889999999975555432 34467788877776644443322222222334444343445554322 12
Q ss_pred ccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026171 156 NDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQDY 230 (242)
Q Consensus 156 n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~~DY 230 (242)
.|...+.|.-+....++++ ..+++.+.+++ +.|+. ++++.+...+++.+.++|...|...+.+=|
T Consensus 89 --~~~~~l~g~w~f~p~~~g~---t~V~~~~~~e~-~~pl~----~ll~~~~~~~~~~~~~~~v~af~~ra~~~~ 153 (161)
T 3p9v_A 89 --EGNGVVSGSWTLSAKGDNA---TAVKFQTSAEL-TVPLP----SLLKLAISPVIKHEFNSLVDTYMANLKKAF 153 (161)
T ss_dssp --STTEEEEEEEEEEESSSSC---EEEEEEEEEEE-EECSC----GGGHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred --ccceeEEEEEEEEECCCCe---EEEEEEEEEEE-cCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456655554433332 23334444444 22222 556777888888888888888877765433
No 2
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=93.10 E-value=2.2 Score=32.47 Aligned_cols=128 Identities=10% Similarity=0.063 Sum_probs=62.1
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCCccccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGSDIVES 154 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~~~v~~ 154 (242)
..+=+++.||+.+..+++.- ..++ ++++.|+..+. +++.+.....- .+++...+.+..+.+. ....|..
T Consensus 26 e~Vw~~l~D~~~~~~w~p~~--~~~~-~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~i~~~-~~~~~~~---- 95 (157)
T 2ns9_A 26 EEVFEFLTDPKRFSRAFPGF--KSVE-VEDGSFTIELRLSLGPLRGDARV--RASFEDLEKPSKATVK-GSGRGAG---- 95 (157)
T ss_dssp HHHHHHHTCHHHHGGGSTTE--EEEE-EETTEEEEEEEEESSSSEEEEEE--EEEEEEEETTTEEEEE-EEEECSS----
T ss_pred HHHHHHHcCHHHHHhhCCCc--eEEE-ECCCEEEEEEEEEEcceeEEEEE--EEEEEecCCCcEEEEE-EEecCCC----
Confidence 67889999998885555432 3667 78888887753 12222233332 2333211122344332 1222311
Q ss_pred cccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHH
Q 026171 155 QNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLL 222 (242)
Q Consensus 155 ~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl 222 (242)
..|....+-.+.+ .++++.+.... .+++ +.++..+...++..+.+.++++.+++++.++
T Consensus 96 --~~~~~~~~~~l~~--~~~gT~v~~~~----~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~ 154 (157)
T 2ns9_A 96 --STLDFTLRFAVEP--SGGGSRVSWVF----EGNV-GGLAASMGGRVLDSLARRMINDVISGVKREL 154 (157)
T ss_dssp --EEEEEEEEEEEEE--ETTEEEEEEEE----EEEE-EEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccEEEEEEEEEEe--CCCcEEEEEEE----EEEE-CcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333323433 22444444433 3444 4445444555666666666666665555443
No 3
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=92.25 E-value=3.2 Score=32.10 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=66.3
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEec-CceeEeEEEEEEEEE-EEEEcCCCCeEEEEeeEEeCCcccc
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLP-KVQFLNFEAAPVMDL-RVTPTDKDCTVQLLSCKFEGSDIVE 153 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~-~~~ff~~eVePvv~l-rV~~~~~~~~v~l~sc~l~G~~~v~ 153 (242)
..+=+++.||+.+..+++.- ..++.++++.|+..+. +++.+..++...+.+ ++.+ ...+.+...- .|.+
T Consensus 16 e~Vw~~l~D~e~~~~w~p~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~--- 86 (162)
T 2pcs_A 16 EEVWSKLMDPSILSKCIMGC--KSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKP---PYHYKLLVNG-EGGP--- 86 (162)
T ss_dssp HHHHHHHTCHHHHHHHSTTE--EEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEET---TTEEEEEEEE-EETT---
T ss_pred HHHHHHhcCHHHHHhhCCCc--eEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCC---CcEEEEEEEe-cCCC---
Confidence 67899999999885555432 3677778888877652 122233333333222 2233 2244332111 1111
Q ss_pred ccccceeeeEEEEEEEee-cCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHH
Q 026171 154 SQNDRFSAFMINHMTWNT-NDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLL 223 (242)
Q Consensus 154 ~~n~~F~l~m~~~L~~~~-~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~ 223 (242)
..+. +.+.++... .++.+.+.. .+.+++ ..++..++..++..+.+.++++.+++++.++.
T Consensus 87 ---~~~~--~~~~~~l~~~~~~gT~v~~----~~~~~~-~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e 147 (162)
T 2pcs_A 87 ---GFVN--AEGVIDLTPINDECTQLTY----TYSAEV-GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIA 147 (162)
T ss_dssp ---EEEE--EEEEEEEEESSSSEEEEEE----EEEEEE-ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccEE--EEEEEEEEecCCCcEEEEE----EEEEEE-CCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111 233333333 223344443 334455 45666666677777777777777776666554
No 4
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=81.28 E-value=17 Score=28.16 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.9
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEecC
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVLPK 114 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l~~ 114 (242)
..+=+|+.||+.+-..++.- ..++.++++.++..+..
T Consensus 17 e~V~~~~~D~e~~p~w~p~~--~~v~~~~~~~~~~~~~~ 53 (155)
T 3ggn_A 17 EQLYAVWRDLPGLPLLMTHL--RSVEVLDDKRSRWTVEA 53 (155)
T ss_dssp HHHHHHHHCGGGHHHHSTTC--CEEEECSSSEEEEEEEC
T ss_pred HHHHHHHhCHHHhHHHhhhc--eEEEEecCCeeEEEEEe
Confidence 67889999999984444443 48888988888877653
No 5
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=69.81 E-value=33 Score=25.85 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=64.0
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccC------CeEEEEecCceeEeEEEEEEEEEEEEEcCCCCeEEEEeeEEeCC
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDT------NTYRCVLPKVQFLNFEAAPVMDLRVTPTDKDCTVQLLSCKFEGS 149 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd------~~fRl~l~~~~ff~~eVePvv~lrV~~~~~~~~v~l~sc~l~G~ 149 (242)
..+=++++|++++..+++.= ..++.++. +.++..+. +++.++... ...++...+..+.|.++.. .|
T Consensus 15 ~~v~~~v~D~~~~p~~~p~~--~~~~v~~~~~~~g~~~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~i~~~~~--~G- 86 (148)
T 1t17_A 15 DQLFELVGDVDAYPKFVPWI--TGMRTWNGRVDGAVSTVDAEAQ-VGFSFLREK--FATRVRRDKDARSIDVSLL--YG- 86 (148)
T ss_dssp HHHHHHHTTTTCCSSCCSSC--CCCCEEEEEEETTEEEEEEEEE-CSTTSSCCE--EEEEEEEETTTCEEEEEES--ST-
T ss_pred HHHHHHHHHHhhHHhhCCCc--CeeEEEEecCCCCCceEEEEEE-EEecceeEE--EEEEEEEcCCCcEEEEEEC--CC-
Confidence 67889999999886655443 24454432 33444443 444444332 2223333233335544432 23
Q ss_pred ccccccccceeeeEEEEEEEeecCCCceEEEEEEEEEEEEEeCCcceecchhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026171 150 DIVESQNDRFSAFMINHMTWNTNDSESFLEVEVKLKLCLEIYTRPFSLLPISAVERPGNLMMQALVDRLVPLLLRQLLQD 229 (242)
Q Consensus 150 ~~v~~~n~~F~l~m~~~L~~~~~~~~~~L~g~~~L~V~v~l~P~pf~llP~~lle~tGn~vL~~IL~~i~~rl~~qL~~D 229 (242)
+ | -.+.|..+....++ + ..+++.+.+++ +. +++...++.+++.+.+.|...|.+.+.+=
T Consensus 87 ~--------f-~~~~g~w~f~~~~~--g--t~v~~~~~~~~-~~-------~l~~~l~~~~~~~~~~~~~~~f~~r~~~~ 145 (148)
T 1t17_A 87 P--------F-KRLNNGWRFMPEGD--A--TRVEFVIEFAF-KS-------ALLDAMLAANVDRAAGKLIACFEARAQQL 145 (148)
T ss_dssp T--------S-SCEEEEEEEEEETT--E--EEEEEEEEECC-SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------h-hccEEEEEEEECCC--C--eEEEEEEEEEE-Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 11344444333222 1 34445555555 32 45566777777777777777776666544
Q ss_pred H
Q 026171 230 Y 230 (242)
Q Consensus 230 Y 230 (242)
|
T Consensus 146 ~ 146 (148)
T 1t17_A 146 H 146 (148)
T ss_dssp H
T ss_pred h
Confidence 4
No 6
>2yjl_A EXSB, exoenzyme S synthesis protein B; lipid-binding protein, pilotin; 1.81A {Pseudomonas aeruginosa}
Probab=18.98 E-value=1.2e+02 Score=23.73 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=33.3
Q ss_pred EEecCCCcCcceEEccCCeEEEEecCceeEeEEEEEEEEEEEEE-cCCCCeEEEE-eeEEeCCcc
Q 026171 89 QAMLNTSALQSFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTP-TDKDCTVQLL-SCKFEGSDI 151 (242)
Q Consensus 89 ~alldp~~~~rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~-~~~~~~v~l~-sc~l~G~~~ 151 (242)
+++.+. |+-.++.-.||+.|.|+-| ++++.+ +-.++.+.++ ...+.|+..
T Consensus 34 laVveG----R~l~Va~t~Yrv~mLPL~F---------s~rL~plq~aegeLYLRarLrw~g~~a 85 (125)
T 2yjl_A 34 YAVVQG----RMQTIAERRYRVSGLPLRY---------AFDLEVDRLEGEALYLRTELSWVGVAA 85 (125)
T ss_dssp EEEETT----EEEEEEEEEEEESSSCEEE---------EEEEEHHHHTTCCEEEEEEEEETTCCS
T ss_pred EEEECC----EEEEeEeeEEEeccCcEEE---------EEecChhhhcCccEEEEEEEeeCchHH
Confidence 778887 7888999999999999865 345544 2334455555 444455543
No 7
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=18.10 E-value=1.3e+02 Score=23.66 Aligned_cols=36 Identities=11% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCCce-EEecCCCcCcceEEccCCeEEEEec--CceeEeEEEE
Q 026171 84 HPSGI-QAMLNTSALQSFQFLDTNTYRCVLP--KVQFLNFEAA 123 (242)
Q Consensus 84 ~p~r~-~alldp~~~~rie~Lgd~~fRl~l~--~~~ff~~eVe 123 (242)
+|... |.+.++ ++|.+.+..||+.++ .+++|+|++.
T Consensus 6 ~~~~~~y~vP~~----~ve~l~PkGf~VSIpepGi~lFaFh~~ 44 (130)
T 2kha_A 6 QPRAQQYVVPSA----KLEAIYPRGLRVSIPDDGFSLFAFHGK 44 (130)
T ss_dssp -----CCCCCCC----EEEEETTTEEEEEEECCSCSEEEEEEE
T ss_pred CcceeEecCCCc----EEEEeCCCCEEEEEeCCCcEEEEEEEE
Confidence 45455 666666 899999999999985 5778888664
No 8
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=17.55 E-value=1.3e+02 Score=22.78 Aligned_cols=25 Identities=8% Similarity=0.412 Sum_probs=22.4
Q ss_pred ceEEccCCeEEEEecC---ceeEeEEEE
Q 026171 99 SFQFLDTNTYRCVLPK---VQFLNFEAA 123 (242)
Q Consensus 99 rie~Lgd~~fRl~l~~---~~ff~~eVe 123 (242)
++|.+.+..||+.++- +++|+|++.
T Consensus 7 ~ve~l~P~G~rvsipD~pgi~lf~fh~~ 34 (107)
T 3ie4_A 7 KIDVFYPKGFEVSIPDEEGITLFAFHGK 34 (107)
T ss_dssp EEEECSSSCEEEEEECCTTEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEcCCCCCEEEEEEEE
Confidence 8999999999999975 999999875
No 9
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=14.03 E-value=1.1e+02 Score=23.04 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred cchHHHhcCCCceEEecCCCcCcceEEccCCeEEEEe
Q 026171 76 YHISEFLSHPSGIQAMLNTSALQSFQFLDTNTYRCVL 112 (242)
Q Consensus 76 ~~l~eYL~~p~r~~alldp~~~~rie~Lgd~~fRl~l 112 (242)
..+=++|.+|+++..-+.+. ..+.-.++.|++.+
T Consensus 23 e~Vw~altd~~~~~~W~~~~---~~~~~~Gg~~~~~~ 56 (152)
T 2kew_A 23 QKVWETVSTSEGIAKWFMPN---DFQLKEGQEFHLQS 56 (152)
T ss_dssp HHHHHHSSSSHHHHHHHCSC---CCCSCSSCCBCSSS
T ss_pred HHHHHHHhCHHHHHHhcCCC---CCCCCCCCEEEEEe
Confidence 56788888987763333332 33333456777776
No 10
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=13.27 E-value=1.2e+02 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=20.8
Q ss_pred ceEEccCCeEEEEecCceeEeEEEEEEEEEEEEE
Q 026171 99 SFQFLDTNTYRCVLPKVQFLNFEAAPVMDLRVTP 132 (242)
Q Consensus 99 rie~Lgd~~fRl~l~~~~ff~~eVePvv~lrV~~ 132 (242)
.++.-|.++|.|.+..-+.++ +-.+.|.|.+
T Consensus 80 ~v~~~DsG~Y~C~v~~~~~~~---~~~v~L~V~~ 110 (115)
T 2or7_A 80 NTVVGDGGPYCCVVEIPGAFH---FVDYMLEVKP 110 (115)
T ss_dssp SCCGGGCEEEEEEECCTTSCE---EEEEEEEEES
T ss_pred cCCHHHCEEEEEEEECCCcee---EEEEEEEEcC
Confidence 344457899999998665544 5566666654
Done!