Query 026172
Match_columns 242
No_of_seqs 295 out of 1918
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.8 1.8E-19 4E-24 162.8 4.8 223 13-237 2-270 (344)
2 PHA02929 N1R/p28-like protein; 99.2 4.8E-12 1E-16 109.6 3.7 56 141-196 172-235 (238)
3 PF13920 zf-C3HC4_3: Zinc fing 99.2 6.2E-12 1.3E-16 83.4 2.9 47 143-189 2-49 (50)
4 PF13639 zf-RING_2: Ring finge 99.2 3.5E-12 7.6E-17 82.3 1.4 41 144-184 1-44 (44)
5 PLN03208 E3 ubiquitin-protein 99.2 1.3E-11 2.9E-16 103.1 4.4 53 138-190 13-81 (193)
6 PF15227 zf-C3HC4_4: zinc fing 99.2 1.3E-11 2.9E-16 79.0 3.2 38 146-183 1-42 (42)
7 PHA02926 zinc finger-like prot 99.1 2.9E-11 6.3E-16 102.4 3.4 56 141-196 168-238 (242)
8 PF13923 zf-C3HC4_2: Zinc fing 99.1 5.5E-11 1.2E-15 74.8 2.7 38 146-183 1-39 (39)
9 KOG0823 Predicted E3 ubiquitin 99.1 6.8E-11 1.5E-15 100.7 2.7 48 141-188 45-95 (230)
10 smart00504 Ubox Modified RING 99.0 2E-10 4.3E-15 79.3 3.2 47 143-189 1-47 (63)
11 TIGR00599 rad18 DNA repair pro 99.0 2.8E-10 6E-15 105.2 4.8 58 139-196 22-79 (397)
12 KOG0317 Predicted E3 ubiquitin 99.0 2.8E-10 6.1E-15 99.7 4.0 48 141-188 237-284 (293)
13 PF12678 zf-rbx1: RING-H2 zinc 99.0 3.5E-10 7.7E-15 81.0 3.1 42 143-184 19-73 (73)
14 COG5243 HRD1 HRD ubiquitin lig 99.0 6.4E-10 1.4E-14 100.3 5.2 49 140-188 284-345 (491)
15 KOG0287 Postreplication repair 98.9 3.7E-10 8.1E-15 100.7 2.4 86 139-230 19-104 (442)
16 PF00097 zf-C3HC4: Zinc finger 98.9 7.8E-10 1.7E-14 70.0 2.9 38 146-183 1-41 (41)
17 cd00162 RING RING-finger (Real 98.9 1.7E-09 3.7E-14 68.5 2.9 43 145-187 1-45 (45)
18 KOG0320 Predicted E3 ubiquitin 98.8 1.7E-09 3.6E-14 88.8 2.7 48 142-189 130-179 (187)
19 COG5432 RAD18 RING-finger-cont 98.8 3.9E-09 8.5E-14 92.5 3.8 86 140-228 22-107 (391)
20 PF14634 zf-RING_5: zinc-RING 98.8 5.4E-09 1.2E-13 67.4 3.1 41 145-185 1-44 (44)
21 KOG4628 Predicted E3 ubiquitin 98.8 6.8E-09 1.5E-13 94.1 4.7 46 144-189 230-279 (348)
22 smart00184 RING Ring finger. E 98.7 9.4E-09 2E-13 62.8 3.1 38 146-183 1-39 (39)
23 PF12861 zf-Apc11: Anaphase-pr 98.7 1.3E-08 2.8E-13 74.3 3.5 49 140-188 18-82 (85)
24 PF04564 U-box: U-box domain; 98.7 8.8E-09 1.9E-13 73.7 2.3 49 142-190 3-52 (73)
25 KOG2164 Predicted E3 ubiquitin 98.7 9.3E-09 2E-13 96.3 2.9 47 143-189 186-237 (513)
26 COG5540 RING-finger-containing 98.6 2.1E-08 4.5E-13 88.5 2.8 47 142-188 322-372 (374)
27 PF13445 zf-RING_UBOX: RING-ty 98.6 2E-08 4.2E-13 64.5 1.9 35 146-181 1-43 (43)
28 COG5574 PEX10 RING-finger-cont 98.6 2.6E-08 5.6E-13 86.4 2.5 48 141-188 213-262 (271)
29 KOG0802 E3 ubiquitin ligase [P 98.5 5.8E-08 1.2E-12 94.0 1.8 47 141-187 289-340 (543)
30 KOG2177 Predicted E3 ubiquitin 98.4 8.4E-08 1.8E-12 83.3 2.0 47 139-185 9-55 (386)
31 KOG4172 Predicted E3 ubiquitin 98.4 5.6E-08 1.2E-12 64.7 0.6 47 144-190 8-56 (62)
32 TIGR00570 cdk7 CDK-activating 98.3 1.5E-06 3.1E-11 77.9 5.8 51 143-193 3-59 (309)
33 PF14835 zf-RING_6: zf-RING of 98.2 1.4E-07 3E-12 65.2 -1.2 50 141-192 5-55 (65)
34 KOG0978 E3 ubiquitin ligase in 98.1 8.4E-07 1.8E-11 86.8 1.6 47 143-189 643-690 (698)
35 KOG4265 Predicted E3 ubiquitin 98.1 1.8E-06 4E-11 78.0 2.8 49 141-189 288-337 (349)
36 KOG4159 Predicted E3 ubiquitin 98.0 2.4E-06 5.1E-11 79.4 2.6 51 139-189 80-130 (398)
37 KOG1002 Nucleotide excision re 98.0 3.1E-06 6.8E-11 79.8 3.0 101 74-188 481-586 (791)
38 KOG0824 Predicted E3 ubiquitin 98.0 3.3E-06 7.1E-11 74.7 1.9 48 142-189 6-54 (324)
39 KOG0828 Predicted E3 ubiquitin 97.9 3.7E-06 8E-11 78.7 2.1 48 141-188 569-634 (636)
40 KOG1785 Tyrosine kinase negati 97.9 5.7E-06 1.2E-10 75.7 1.9 46 144-189 370-417 (563)
41 KOG0311 Predicted E3 ubiquitin 97.8 3.9E-06 8.6E-11 75.7 0.2 49 140-188 40-90 (381)
42 COG5219 Uncharacterized conser 97.8 8E-06 1.7E-10 81.4 2.1 50 139-188 1465-1523(1525)
43 COG5194 APC11 Component of SCF 97.7 1.8E-05 3.9E-10 56.8 2.1 30 159-188 52-81 (88)
44 KOG2660 Locus-specific chromos 97.7 2.8E-05 6E-10 69.7 3.6 92 139-230 11-107 (331)
45 PF11793 FANCL_C: FANCL C-term 97.7 8.9E-06 1.9E-10 57.7 -0.3 46 143-188 2-66 (70)
46 KOG1734 Predicted RING-contain 97.6 1.7E-05 3.6E-10 69.3 0.9 48 141-188 222-281 (328)
47 KOG1493 Anaphase-promoting com 97.6 1.3E-05 2.8E-10 57.1 0.1 47 142-188 19-81 (84)
48 KOG0804 Cytoplasmic Zn-finger 97.6 3.4E-05 7.3E-10 71.7 1.8 48 139-188 171-222 (493)
49 COG5152 Uncharacterized conser 97.5 3.7E-05 8.1E-10 64.4 1.4 52 144-199 197-248 (259)
50 KOG0297 TNF receptor-associate 97.5 4.7E-05 1E-09 71.0 2.0 49 140-188 18-67 (391)
51 KOG2879 Predicted E3 ubiquitin 97.4 0.00068 1.5E-08 59.5 7.4 51 138-188 234-287 (298)
52 KOG0827 Predicted E3 ubiquitin 97.3 0.00012 2.5E-09 67.0 2.3 41 144-184 5-52 (465)
53 smart00744 RINGv The RING-vari 97.3 0.0002 4.3E-09 47.2 2.8 40 145-184 1-49 (49)
54 KOG1813 Predicted E3 ubiquitin 97.3 0.00012 2.5E-09 64.9 1.7 45 144-188 242-286 (313)
55 PF11789 zf-Nse: Zinc-finger o 97.3 0.00016 3.4E-09 49.2 1.9 42 141-182 9-53 (57)
56 KOG4692 Predicted E3 ubiquitin 97.2 0.00057 1.2E-08 62.0 4.9 49 141-189 420-468 (489)
57 PHA03096 p28-like protein; Pro 97.1 0.00022 4.8E-09 63.7 1.9 43 144-186 179-232 (284)
58 KOG4275 Predicted E3 ubiquitin 97.0 0.00017 3.6E-09 63.8 -0.4 45 142-190 299-344 (350)
59 KOG0825 PHD Zn-finger protein 96.9 0.00024 5.3E-09 70.0 0.2 53 142-194 122-177 (1134)
60 KOG2930 SCF ubiquitin ligase, 96.8 0.00071 1.5E-08 51.0 1.9 28 159-186 79-106 (114)
61 KOG1814 Predicted E3 ubiquitin 96.7 0.0019 4.2E-08 59.7 4.6 44 142-185 183-237 (445)
62 KOG4739 Uncharacterized protei 96.6 0.0012 2.6E-08 57.1 2.4 53 144-198 4-58 (233)
63 KOG1571 Predicted E3 ubiquitin 96.6 0.0018 3.9E-08 58.9 3.5 47 140-189 302-348 (355)
64 COG5236 Uncharacterized conser 96.6 0.0017 3.6E-08 58.9 3.2 52 139-190 57-110 (493)
65 KOG1645 RING-finger-containing 96.5 0.0016 3.5E-08 60.1 2.3 47 142-188 3-56 (463)
66 PF14447 Prok-RING_4: Prokaryo 96.4 0.0017 3.6E-08 43.6 1.6 46 142-189 6-51 (55)
67 KOG4185 Predicted E3 ubiquitin 96.4 0.0025 5.5E-08 56.9 2.9 44 144-187 4-54 (296)
68 KOG2114 Vacuolar assembly/sort 95.9 0.0031 6.8E-08 62.9 1.4 66 117-185 810-880 (933)
69 KOG1941 Acetylcholine receptor 95.9 0.0042 9.2E-08 57.2 2.1 46 140-185 362-413 (518)
70 KOG1001 Helicase-like transcri 95.8 0.0033 7.2E-08 62.5 0.9 48 144-192 455-504 (674)
71 KOG1428 Inhibitor of type V ad 95.7 0.0083 1.8E-07 63.0 3.4 54 142-195 3485-3551(3738)
72 PF10367 Vps39_2: Vacuolar sor 95.7 0.0089 1.9E-07 44.9 2.7 34 138-171 73-108 (109)
73 KOG3002 Zn finger protein [Gen 95.5 0.0082 1.8E-07 54.1 2.3 45 141-188 46-91 (299)
74 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.026 5.6E-07 49.8 5.0 50 140-190 110-163 (260)
75 PF14570 zf-RING_4: RING/Ubox 95.1 0.021 4.6E-07 37.3 2.7 42 146-187 1-47 (48)
76 KOG4367 Predicted Zn-finger pr 95.1 0.012 2.5E-07 55.1 2.0 35 141-175 2-36 (699)
77 KOG3039 Uncharacterized conser 95.1 0.018 3.9E-07 50.1 2.9 49 142-190 220-272 (303)
78 PHA02825 LAP/PHD finger-like p 95.0 0.034 7.4E-07 45.3 4.1 47 141-188 6-59 (162)
79 COG5222 Uncharacterized conser 94.9 0.016 3.4E-07 51.8 2.1 42 144-185 275-318 (427)
80 PF07800 DUF1644: Protein of u 94.9 0.022 4.7E-07 46.4 2.7 34 142-175 1-47 (162)
81 PF05290 Baculo_IE-1: Baculovi 94.7 0.03 6.6E-07 44.3 2.9 49 142-190 79-134 (140)
82 KOG4445 Uncharacterized conser 94.5 0.019 4.2E-07 51.3 1.6 47 142-188 114-186 (368)
83 KOG3800 Predicted E3 ubiquitin 94.4 0.056 1.2E-06 48.1 4.3 46 145-190 2-53 (300)
84 KOG0826 Predicted E3 ubiquitin 93.8 0.035 7.5E-07 50.2 1.9 45 142-186 299-344 (357)
85 PHA02862 5L protein; Provision 93.8 0.066 1.4E-06 43.0 3.2 44 144-188 3-53 (156)
86 KOG2034 Vacuolar sorting prote 93.0 0.076 1.7E-06 53.6 3.1 36 139-174 813-850 (911)
87 KOG2932 E3 ubiquitin ligase in 93.0 0.045 9.7E-07 49.1 1.3 46 143-190 90-136 (389)
88 KOG3268 Predicted E3 ubiquitin 93.0 0.084 1.8E-06 43.9 2.8 45 144-188 166-228 (234)
89 KOG3970 Predicted E3 ubiquitin 92.8 0.086 1.9E-06 45.4 2.6 48 141-188 48-105 (299)
90 KOG1100 Predicted E3 ubiquitin 92.6 0.055 1.2E-06 46.3 1.3 40 145-188 160-200 (207)
91 PF08746 zf-RING-like: RING-li 92.5 0.14 3.1E-06 32.6 2.8 38 146-183 1-43 (43)
92 PF03854 zf-P11: P-11 zinc fin 92.5 0.051 1.1E-06 35.3 0.7 37 153-189 10-47 (50)
93 PF10272 Tmpp129: Putative tra 92.2 0.12 2.6E-06 47.7 3.0 28 162-189 312-352 (358)
94 PF05883 Baculo_RING: Baculovi 91.9 0.089 1.9E-06 41.8 1.6 33 143-175 26-67 (134)
95 KOG1952 Transcription factor N 91.9 0.12 2.6E-06 52.0 2.8 47 142-188 190-247 (950)
96 KOG1940 Zn-finger protein [Gen 91.6 0.11 2.4E-06 46.2 2.0 44 142-185 157-204 (276)
97 COG5175 MOT2 Transcriptional r 91.5 0.13 2.8E-06 46.8 2.4 49 142-190 13-66 (480)
98 KOG0298 DEAD box-containing he 91.2 0.056 1.2E-06 56.5 -0.3 45 141-185 1151-1196(1394)
99 KOG4362 Transcriptional regula 90.2 0.078 1.7E-06 52.4 -0.3 47 142-188 20-69 (684)
100 PF12906 RINGv: RING-variant d 89.9 0.17 3.8E-06 32.8 1.3 38 146-183 1-47 (47)
101 COG5220 TFB3 Cdk activating ki 89.9 0.14 3E-06 44.5 1.0 47 142-188 9-64 (314)
102 KOG3161 Predicted E3 ubiquitin 89.1 0.18 3.8E-06 49.5 1.2 38 142-181 10-51 (861)
103 KOG2817 Predicted E3 ubiquitin 89.0 0.25 5.5E-06 45.7 2.1 43 144-186 335-383 (394)
104 KOG1815 Predicted E3 ubiquitin 87.1 0.47 1E-05 45.1 2.7 35 141-175 68-103 (444)
105 PF02891 zf-MIZ: MIZ/SP-RING z 85.9 0.48 1E-05 31.1 1.5 42 144-186 3-50 (50)
106 PF14569 zf-UDP: Zinc-binding 85.4 0.86 1.9E-05 32.8 2.6 53 142-194 8-68 (80)
107 KOG1812 Predicted E3 ubiquitin 84.6 0.6 1.3E-05 43.6 2.1 34 142-175 145-182 (384)
108 KOG3899 Uncharacterized conser 84.2 0.61 1.3E-05 41.7 1.8 28 161-188 325-365 (381)
109 KOG0309 Conserved WD40 repeat- 83.2 0.74 1.6E-05 46.1 2.1 26 157-182 1044-1069(1081)
110 KOG3113 Uncharacterized conser 79.9 2.9 6.2E-05 36.8 4.3 61 142-207 110-174 (293)
111 KOG3039 Uncharacterized conser 79.5 1.5 3.3E-05 38.4 2.5 37 139-175 39-75 (303)
112 PLN02638 cellulose synthase A 79.5 2.4 5.2E-05 44.3 4.3 58 142-200 16-81 (1079)
113 KOG0825 PHD Zn-finger protein 77.9 1.1 2.4E-05 45.1 1.3 47 142-188 95-154 (1134)
114 KOG3053 Uncharacterized conser 76.2 1.9 4.2E-05 37.9 2.2 56 140-195 17-89 (293)
115 KOG3579 Predicted E3 ubiquitin 74.4 1.5 3.3E-05 39.1 1.2 34 142-175 267-304 (352)
116 KOG0827 Predicted E3 ubiquitin 74.0 0.37 8.1E-06 44.7 -2.8 46 144-189 197-246 (465)
117 PLN02189 cellulose synthase 73.3 2.7 5.9E-05 43.8 2.8 57 142-199 33-97 (1040)
118 KOG1812 Predicted E3 ubiquitin 71.4 1.8 3.8E-05 40.5 0.9 42 142-183 305-351 (384)
119 KOG0269 WD40 repeat-containing 70.5 3.9 8.3E-05 41.2 3.0 44 144-187 780-827 (839)
120 PLN02436 cellulose synthase A 70.2 3.5 7.6E-05 43.2 2.8 57 142-199 35-99 (1094)
121 PF10571 UPF0547: Uncharacteri 70.0 2.7 5.9E-05 23.8 1.1 21 145-165 2-24 (26)
122 KOG3842 Adaptor protein Pellin 70.0 4 8.7E-05 37.1 2.8 48 141-188 339-414 (429)
123 COG5183 SSM4 Protein involved 69.7 3.8 8.2E-05 41.7 2.8 48 142-189 11-67 (1175)
124 KOG2113 Predicted RNA binding 69.2 4.1 8.8E-05 37.0 2.6 47 139-187 339-386 (394)
125 COG5109 Uncharacterized conser 69.1 2.8 6.1E-05 38.0 1.6 43 143-185 336-384 (396)
126 PLN02915 cellulose synthase A 68.8 4.1 9E-05 42.5 2.9 58 142-200 14-79 (1044)
127 PLN02400 cellulose synthase 68.6 3.5 7.7E-05 43.2 2.4 58 142-200 35-100 (1085)
128 TIGR00622 ssl1 transcription f 66.1 5.3 0.00012 30.8 2.4 41 144-184 56-110 (112)
129 KOG2231 Predicted E3 ubiquitin 65.4 4.7 0.0001 40.2 2.5 46 145-190 2-54 (669)
130 PF01363 FYVE: FYVE zinc finge 64.7 1.9 4.1E-05 29.7 -0.3 35 139-173 5-43 (69)
131 PF04216 FdhE: Protein involve 63.3 1.5 3.2E-05 39.2 -1.3 45 141-185 170-219 (290)
132 PF07975 C1_4: TFIIH C1-like d 62.3 7.8 0.00017 25.6 2.3 27 158-184 24-50 (51)
133 PF04710 Pellino: Pellino; In 61.8 2.6 5.7E-05 39.3 0.0 46 143-188 328-401 (416)
134 smart00064 FYVE Protein presen 60.1 8.6 0.00019 26.2 2.4 34 141-174 8-45 (68)
135 PF07191 zinc-ribbons_6: zinc- 58.2 1 2.3E-05 31.8 -2.5 43 143-190 1-43 (70)
136 TIGR01562 FdhE formate dehydro 58.1 2.4 5.3E-05 38.4 -0.9 45 142-186 183-233 (305)
137 COG0068 HypF Hydrogenase matur 58.0 7.2 0.00016 39.1 2.3 48 141-188 99-184 (750)
138 KOG4718 Non-SMC (structural ma 57.8 6.8 0.00015 33.6 1.8 44 144-187 182-226 (235)
139 KOG2068 MOT2 transcription fac 57.6 8 0.00017 35.3 2.3 45 144-188 250-298 (327)
140 KOG1829 Uncharacterized conser 56.4 5.4 0.00012 39.2 1.1 24 159-185 535-558 (580)
141 KOG4185 Predicted E3 ubiquitin 54.6 2.2 4.8E-05 38.0 -1.7 44 143-186 207-265 (296)
142 PRK03564 formate dehydrogenase 53.3 4.1 8.8E-05 37.0 -0.2 44 142-185 186-234 (309)
143 PF10146 zf-C4H2: Zinc finger- 52.3 12 0.00025 32.6 2.4 29 165-193 196-224 (230)
144 smart00647 IBR In Between Ring 50.9 3.2 6.8E-05 27.7 -1.1 17 159-175 44-60 (64)
145 KOG4451 Uncharacterized conser 50.7 12 0.00027 32.5 2.3 27 166-192 252-278 (286)
146 PF06844 DUF1244: Protein of u 50.7 8.9 0.00019 26.7 1.2 12 164-175 11-22 (68)
147 PF14446 Prok-RING_1: Prokaryo 49.1 14 0.00031 24.7 1.9 30 143-172 5-38 (54)
148 PRK04023 DNA polymerase II lar 47.8 10 0.00022 39.6 1.5 45 142-188 625-674 (1121)
149 PF04710 Pellino: Pellino; In 47.5 6.2 0.00013 36.9 0.0 43 144-189 278-340 (416)
150 PF10497 zf-4CXXC_R1: Zinc-fin 47.2 22 0.00047 27.0 3.0 25 162-186 37-70 (105)
151 KOG0824 Predicted E3 ubiquitin 45.9 7.3 0.00016 35.2 0.2 53 142-194 104-157 (324)
152 cd00065 FYVE FYVE domain; Zinc 45.0 16 0.00034 23.9 1.7 30 144-173 3-36 (57)
153 PF02318 FYVE_2: FYVE-type zin 44.7 8.9 0.00019 29.6 0.5 44 142-185 53-102 (118)
154 KOG1356 Putative transcription 43.5 6.8 0.00015 39.9 -0.4 45 143-187 229-281 (889)
155 smart00132 LIM Zinc-binding do 43.3 15 0.00033 21.3 1.3 34 146-187 2-37 (39)
156 KOG0801 Predicted E3 ubiquitin 42.6 8 0.00017 31.9 -0.1 26 142-167 176-204 (205)
157 KOG2066 Vacuolar assembly/sort 42.5 24 0.00052 35.9 3.1 41 142-183 783-830 (846)
158 PF06906 DUF1272: Protein of u 42.2 26 0.00057 23.6 2.4 43 145-189 7-53 (57)
159 KOG3799 Rab3 effector RIM1 and 41.6 16 0.00035 29.2 1.5 46 139-188 61-118 (169)
160 KOG1609 Protein involved in mR 40.8 24 0.00053 31.1 2.8 46 143-188 78-134 (323)
161 PF13240 zinc_ribbon_2: zinc-r 39.1 5.1 0.00011 21.9 -1.2 10 176-185 12-21 (23)
162 COG4647 AcxC Acetone carboxyla 38.7 14 0.00029 29.4 0.7 22 146-167 60-81 (165)
163 KOG2807 RNA polymerase II tran 38.0 23 0.00049 32.5 2.0 43 142-184 329-374 (378)
164 PF05605 zf-Di19: Drought indu 37.5 18 0.00038 23.7 1.0 36 143-185 2-39 (54)
165 PF09723 Zn-ribbon_8: Zinc rib 36.7 7.7 0.00017 24.3 -0.8 30 159-189 9-39 (42)
166 KOG1842 FYVE finger-containing 36.4 30 0.00065 33.0 2.7 42 132-173 169-214 (505)
167 PLN02195 cellulose synthase A 34.8 28 0.00061 36.4 2.4 46 143-188 6-59 (977)
168 PF13901 DUF4206: Domain of un 33.5 27 0.00059 29.5 1.8 39 142-185 151-197 (202)
169 COG3813 Uncharacterized protei 33.4 36 0.00078 24.2 2.1 26 162-189 28-53 (84)
170 PF11023 DUF2614: Protein of u 33.4 30 0.00065 26.7 1.8 25 158-188 72-96 (114)
171 PF10083 DUF2321: Uncharacteri 32.2 14 0.0003 30.2 -0.2 70 162-234 27-122 (158)
172 TIGR00143 hypF [NiFe] hydrogen 31.0 26 0.00057 35.5 1.5 24 165-188 120-151 (711)
173 KOG0241 Kinesin-like protein [ 30.2 38 0.00082 35.6 2.4 19 4-22 653-671 (1714)
174 PF14353 CpXC: CpXC protein 29.2 33 0.00072 26.5 1.5 45 144-188 2-49 (128)
175 PF04423 Rad50_zn_hook: Rad50 28.6 20 0.00044 23.4 0.2 11 179-189 22-32 (54)
176 PF00628 PHD: PHD-finger; Int 28.2 9 0.00019 24.5 -1.6 40 145-184 1-49 (51)
177 KOG0802 E3 ubiquitin ligase [P 28.1 36 0.00078 33.2 1.8 45 141-189 477-521 (543)
178 PF14311 DUF4379: Domain of un 27.4 45 0.00097 21.8 1.7 9 175-183 47-55 (55)
179 COG2835 Uncharacterized conser 27.3 13 0.00028 25.4 -0.9 11 178-188 9-19 (60)
180 COG3492 Uncharacterized protei 26.7 34 0.00073 25.5 1.0 12 164-175 42-53 (104)
181 smart00290 ZnF_UBP Ubiquitin C 26.5 40 0.00087 21.3 1.3 23 146-168 2-24 (50)
182 PF13719 zinc_ribbon_5: zinc-r 26.0 37 0.00081 20.5 1.0 10 145-154 4-13 (37)
183 PF06937 EURL: EURL protein; 25.8 56 0.0012 29.1 2.4 38 144-181 31-74 (285)
184 KOG1819 FYVE finger-containing 24.3 25 0.00053 34.1 -0.1 34 137-170 895-932 (990)
185 KOG1815 Predicted E3 ubiquitin 24.0 32 0.00069 32.7 0.6 45 144-188 164-237 (444)
186 PRK11595 DNA utilization prote 23.4 64 0.0014 27.6 2.3 37 145-186 7-43 (227)
187 PLN02248 cellulose synthase-li 23.4 70 0.0015 34.1 2.9 32 160-191 149-180 (1135)
188 PF13717 zinc_ribbon_4: zinc-r 23.1 45 0.00097 20.1 1.0 10 145-154 4-13 (36)
189 PF01485 IBR: IBR domain; Int 22.5 9.3 0.0002 25.3 -2.5 31 145-175 20-60 (64)
190 PRK14714 DNA polymerase II lar 22.3 37 0.00079 36.6 0.7 46 143-188 667-720 (1337)
191 cd00350 rubredoxin_like Rubred 21.7 68 0.0015 18.8 1.5 11 176-186 16-26 (33)
192 KOG1140 N-end rule pathway, re 20.4 98 0.0021 34.6 3.4 32 157-188 1147-1198(1738)
193 KOG1818 Membrane trafficking a 20.2 39 0.00084 33.7 0.4 45 139-183 161-217 (634)
194 PF07503 zf-HYPF: HypF finger; 20.2 80 0.0017 19.1 1.6 22 165-186 1-30 (35)
195 KOG2979 Protein involved in DN 20.1 59 0.0013 28.8 1.4 42 144-185 177-221 (262)
196 smart00531 TFIIE Transcription 20.0 77 0.0017 25.2 2.0 14 176-189 122-135 (147)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-19 Score=162.77 Aligned_cols=223 Identities=28% Similarity=0.425 Sum_probs=169.2
Q ss_pred HHhhhhhHhhhhhCCCCCCCceeeeEEeeccc-hhHHHHhHhhcchhhhhhcchheeeeeeec-cCCCcccchhhh--hc
Q 026172 13 EADIQLANTLASEYPREYDGACLQMRLSYSQA-AHTFLFLVQWIDCRLAGALGLLRILIYKAY-ADGKTTMCTRER--KA 88 (242)
Q Consensus 13 ~~~i~~an~l~~~~~~~~~g~~~qm~ls~~p~-a~~~l~~v~~~~~~la~~~gl~riliy~v~-~dg~~~~~~~~r--k~ 88 (242)
+.+++++ |++..+|+++.+..-+||+++++. ..+...++.|+++..++ .|+.++++|..+ .++...++...+ ..
T Consensus 2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~ 79 (344)
T KOG1039|consen 2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLT 79 (344)
T ss_pred ccccccc-hhhhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchh
Confidence 4678888 999999999999999999999999 78888889999988777 788889999888 888888888777 67
Q ss_pred hHHHHHhhhhhh---------HHHhhhcCCChHHH----------HHHHHhHHHHhhhccccc--------CCCccccCC
Q 026172 89 SIKEFYGVIFPS---------LLQLQRGITDVEDK----------KQKEICDAKYKKKGRMDK--------GKLSEIDIE 141 (242)
Q Consensus 89 sl~efy~~i~~s---------l~ql~~~~~~~~~~----------~~~~~~~e~~~~~~~~~~--------~~~~~~~~~ 141 (242)
..+++++..+++ +.+.+.+...+... .+...+...++..+.... ++.......
T Consensus 80 ~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s 159 (344)
T KOG1039|consen 80 AIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKS 159 (344)
T ss_pred hhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCcc
Confidence 888888888777 32333222222111 112222233333322221 111122224
Q ss_pred ccCeecccccccccce--------ecCCCCcchHHHHHHHhc--c-----CCCCcCcccccccccCCCccccCCchhhhh
Q 026172 142 REEECGICLEICCKIV--------LPDCNHSMCMRCYRNWRA--R-----SQSCPFCRDSLRRVNSGDLWIYTSEDDIVD 206 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v--------~~~CgH~fC~~Ci~~w~~--~-----~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d 206 (242)
.+..|+||++...+.. +++|.|.||.+||+.|.. + ++.||+||.+...+++..+|+.++..+...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~l 239 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKL 239 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeeccccccc
Confidence 5889999999987654 489999999999999984 4 689999999999999999999999988888
Q ss_pred hhhhcHHHHHHHHHhHhcCCCCCCCcceecc
Q 026172 207 LASISRENLKRLFMYIDKLPFITPNPTLVSY 237 (242)
Q Consensus 207 ~~~~~~e~l~rl~~~i~~lp~~~p~~~~~~~ 237 (242)
+.++.++.-.+...|++..+...|..-...|
T Consensus 240 i~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y 270 (344)
T KOG1039|consen 240 IEEYEAEMSAKDCKYFSQGLGSCPFGSKCFY 270 (344)
T ss_pred HHHHHHHhhccchhhhcCCCCCCCCCCcccc
Confidence 8888777777889999999999998655544
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.23 E-value=4.8e-12 Score=109.58 Aligned_cols=56 Identities=30% Similarity=0.905 Sum_probs=47.7
Q ss_pred CccCeeccccccccc--------ceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcc
Q 026172 141 EREEECGICLEICCK--------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW 196 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~--------~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~ 196 (242)
.++.+|+||++.+.+ +++++|+|.||..|+.+|+....+||+||.++..+.....|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 456899999998764 35679999999999999999999999999999877666554
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.22 E-value=6.2e-12 Score=83.40 Aligned_cols=47 Identities=36% Similarity=0.863 Sum_probs=42.4
Q ss_pred cCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+..|.||++...+++..+|||. ||..|+.+|......||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5789999999999999999999 9999999999999999999999874
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.21 E-value=3.5e-12 Score=82.33 Aligned_cols=41 Identities=44% Similarity=0.996 Sum_probs=35.3
Q ss_pred Ceecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172 144 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR 184 (242)
Q Consensus 144 ~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR 184 (242)
.+|+||++.+. .++.++|||.||.+|+.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999985 446788999999999999999999999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.20 E-value=1.3e-11 Score=103.05 Aligned_cols=53 Identities=26% Similarity=0.774 Sum_probs=45.5
Q ss_pred ccCCccCeecccccccccceecCCCCcchHHHHHHHhc----------------cCCCCcCcccccccc
Q 026172 138 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----------------RSQSCPFCRDSLRRV 190 (242)
Q Consensus 138 ~~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----------------~~~~CP~CR~~l~~~ 190 (242)
.+..++.+|+||++.+.++++++|||.||..|+.+|+. ....||.||.++...
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 35557799999999999999999999999999999974 235899999998743
No 6
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=1.3e-11 Score=78.97 Aligned_cols=38 Identities=37% Similarity=0.837 Sum_probs=30.3
Q ss_pred ecccccccccceecCCCCcchHHHHHHHhcc----CCCCcCc
Q 026172 146 CGICLEICCKIVLPDCNHSMCMRCYRNWRAR----SQSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~----~~~CP~C 183 (242)
|+||++.+.+|+.++|||+||..|+.+|+.. ...||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999998873 2579987
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=99.13 E-value=2.9e-11 Score=102.40 Aligned_cols=56 Identities=36% Similarity=0.986 Sum_probs=46.0
Q ss_pred CccCeeccccccccc---------ceecCCCCcchHHHHHHHhcc------CCCCcCcccccccccCCCcc
Q 026172 141 EREEECGICLEICCK---------IVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLW 196 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~---------~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~~~~~~ 196 (242)
.++.+|+||++...+ +++++|+|.||..||..|... ..+||+||..+..+.++..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 466899999998532 477899999999999999873 35699999999887776654
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=5.5e-11 Score=74.81 Aligned_cols=38 Identities=34% Similarity=0.951 Sum_probs=34.1
Q ss_pred ecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCc
Q 026172 146 CGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~C 183 (242)
|+||++.+.++ +.++|||.||..|+.+|++....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 679999999999999999989999988
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.8e-11 Score=100.67 Aligned_cols=48 Identities=29% Similarity=0.800 Sum_probs=44.3
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~ 188 (242)
....+|.||++.-.+||++.|||.||..|+.+|+. .++.||+|++.++
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 45689999999999999999999999999999997 6789999999876
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.02 E-value=2e-10 Score=79.25 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=43.2
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+..|+||.+.+.+|+.++|||+||..|+.+|+....+||+|+.+++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 35799999999999999999999999999999888999999988753
No 11
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=2.8e-10 Score=105.24 Aligned_cols=58 Identities=26% Similarity=0.669 Sum_probs=49.7
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW 196 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~ 196 (242)
.++....|+||++.+..|++++|||.||..|+..|+.....||.||..+.......++
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccch
Confidence 4567789999999999999999999999999999999888999999998754444443
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.8e-10 Score=99.65 Aligned_cols=48 Identities=29% Similarity=0.857 Sum_probs=44.7
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+....|.+|++....|..+||||.||..||..|......||+||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 445799999999999999999999999999999999899999999886
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.97 E-value=3.5e-10 Score=80.97 Aligned_cols=42 Identities=33% Similarity=0.923 Sum_probs=35.0
Q ss_pred cCeeccccccccc-------------ceecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172 143 EEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRARSQSCPFCR 184 (242)
Q Consensus 143 ~~~C~ICl~~~~~-------------~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR 184 (242)
+..|+||++.+.+ .+..+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999999842 24568999999999999999999999997
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.4e-10 Score=100.26 Aligned_cols=49 Identities=29% Similarity=0.793 Sum_probs=42.4
Q ss_pred CCccCeecccccccc-------------cceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 140 IEREEECGICLEICC-------------KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~-------------~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..++..|.||++.+. .|..++|||.+|.+|++.|.+++++||+||.|+-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 357789999999843 2467899999999999999999999999999953
No 15
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.93 E-value=3.7e-10 Score=100.65 Aligned_cols=86 Identities=24% Similarity=0.580 Sum_probs=64.1
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccCCchhhhhhhhhcHHHHHHH
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRL 218 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~e~l~rl 218 (242)
.+..-++|.||.+.|..|+++||+|+||.-||+.++.....||.|+.++.....+.++++ ++++.-....+.. |
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il---~Eiv~S~~~~R~~---L 92 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRIL---DEIVKSLNFARNH---L 92 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHH---HHHHHHHHHHHHH---H
Confidence 344568999999999999999999999999999999999999999999886655555443 4666665554544 4
Q ss_pred HHhHhcCCCCCC
Q 026172 219 FMYIDKLPFITP 230 (242)
Q Consensus 219 ~~~i~~lp~~~p 230 (242)
+.++.--|..+|
T Consensus 93 l~fl~~~~~p~P 104 (442)
T KOG0287|consen 93 LQFLLESPAPSP 104 (442)
T ss_pred HHHHhcCCCCCc
Confidence 444443343344
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.92 E-value=7.8e-10 Score=70.00 Aligned_cols=38 Identities=47% Similarity=1.065 Sum_probs=35.6
Q ss_pred ecccccccccce-ecCCCCcchHHHHHHHhc--cCCCCcCc
Q 026172 146 CGICLEICCKIV-LPDCNHSMCMRCYRNWRA--RSQSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~--~~~~CP~C 183 (242)
|+||++.+.+++ .++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999988 78899988
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.86 E-value=1.7e-09 Score=68.51 Aligned_cols=43 Identities=40% Similarity=0.987 Sum_probs=36.5
Q ss_pred eecccccccccce-ecCCCCcchHHHHHHHhcc-CCCCcCccccc
Q 026172 145 ECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR-SQSCPFCRDSL 187 (242)
Q Consensus 145 ~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l 187 (242)
+|+||++.+..++ .++|||.||..|+..|... ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999996554 4569999999999999986 88899998753
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.7e-09 Score=88.75 Aligned_cols=48 Identities=27% Similarity=0.749 Sum_probs=42.1
Q ss_pred ccCeecccccccccc--eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~--v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
....|+|||+.+.+. +-++|||.||..||+..+.....||+|+..++.
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 447899999998854 558999999999999999999999999987663
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.79 E-value=3.9e-09 Score=92.53 Aligned_cols=86 Identities=20% Similarity=0.406 Sum_probs=65.7
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccCCchhhhhhhhhcHHHHHHHH
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLF 219 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~~~~~~e~l~rl~ 219 (242)
+..-+.|-||-+.+..|+.++|||.||.-||+..+....-||.||.+....-.... ....++.+-.+..+..++.++
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~---s~~~ei~es~~~~r~~l~~~L 98 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGS---SGSREINESHARNRDLLRKVL 98 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccc---hhHHHHHHhhhhccHHHHHHH
Confidence 34457899999999999999999999999999999999999999998764433332 334566666666666666666
Q ss_pred HhHhcCCCC
Q 026172 220 MYIDKLPFI 228 (242)
Q Consensus 220 ~~i~~lp~~ 228 (242)
.....+|..
T Consensus 99 ~~~~~~p~p 107 (391)
T COG5432 99 ESLCRLPRP 107 (391)
T ss_pred hcccCCCCc
Confidence 655656654
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=5.4e-09 Score=67.44 Aligned_cols=41 Identities=34% Similarity=0.985 Sum_probs=36.2
Q ss_pred eecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 145 ECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
+|+||++.+. .+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999993 4678999999999999999877899999984
No 21
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6.8e-09 Score=94.10 Aligned_cols=46 Identities=30% Similarity=0.803 Sum_probs=39.6
Q ss_pred Ceecccccccccc---eecCCCCcchHHHHHHHhccC-CCCcCccccccc
Q 026172 144 EECGICLEICCKI---VLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 189 (242)
Q Consensus 144 ~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~ 189 (242)
..|+||+|.+.+. ..+||+|.||..||.+|+.+. ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999999954 558999999999999999865 569999987753
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.73 E-value=9.4e-09 Score=62.82 Aligned_cols=38 Identities=39% Similarity=1.037 Sum_probs=34.8
Q ss_pred ecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCc
Q 026172 146 CGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~C 183 (242)
|+||++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988888899999999999999998 67789987
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.70 E-value=1.3e-08 Score=74.34 Aligned_cols=49 Identities=29% Similarity=0.811 Sum_probs=40.0
Q ss_pred CCccCeeccccccccc-------------ceecCCCCcchHHHHHHHhcc---CCCCcCcccccc
Q 026172 140 IEREEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~-------------~v~~~CgH~fC~~Ci~~w~~~---~~~CP~CR~~l~ 188 (242)
..++..|+||...|.. .+.-.|+|.||..||.+|++. ...||+||++..
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3457899999988771 244579999999999999983 579999999865
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.69 E-value=8.8e-09 Score=73.67 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=40.6
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~~ 190 (242)
+++.|+|+.+.+.+|+.+++||+|+..||.+|+.. ..+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56889999999999999999999999999999997 99999999988743
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.3e-09 Score=96.29 Aligned_cols=47 Identities=32% Similarity=0.732 Sum_probs=42.5
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhc-----cCCCCcCccccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRR 189 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~l~~ 189 (242)
+..||||++....++.+.|||.||..||.+++. +-..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 789999999999999999999999999999776 45799999998874
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-08 Score=88.50 Aligned_cols=47 Identities=30% Similarity=0.768 Sum_probs=41.2
Q ss_pred ccCeecccccccccc---eecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~ 188 (242)
...+|+|||+.+.+. +.+||.|.||..|+.+|+. -+..||+||.+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 347999999998743 5689999999999999998 6899999999876
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.60 E-value=2e-08 Score=64.53 Aligned_cols=35 Identities=29% Similarity=0.800 Sum_probs=21.8
Q ss_pred eccccccccc----ceecCCCCcchHHHHHHHhcc----CCCCc
Q 026172 146 CGICLEICCK----IVLPDCNHSMCMRCYRNWRAR----SQSCP 181 (242)
Q Consensus 146 C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~----~~~CP 181 (242)
|+||.+ +.. |+.++|||+||.+|+.++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 776 888889999999999999873 45666
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.6e-08 Score=86.41 Aligned_cols=48 Identities=27% Similarity=0.693 Sum_probs=42.8
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHH-HhccCCC-CcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQS-CPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~-w~~~~~~-CP~CR~~l~ 188 (242)
..+..|.||++....+..++|||.||..|+.. |-.+... ||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 56789999999999999999999999999999 8776555 999999765
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.8e-08 Score=93.98 Aligned_cols=47 Identities=38% Similarity=0.725 Sum_probs=42.6
Q ss_pred CccCeeccccccccc-----ceecCCCCcchHHHHHHHhccCCCCcCccccc
Q 026172 141 EREEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~-----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l 187 (242)
..+..|.||++.+.. +..++|||.||..|++.|+++..+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457899999999987 67889999999999999999999999999943
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.4e-08 Score=83.26 Aligned_cols=47 Identities=36% Similarity=0.752 Sum_probs=42.5
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
...++..|+||++.+..+.+++|||+||..|+..++.....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34578999999999999998999999999999998777789999994
No 31
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.6e-08 Score=64.66 Aligned_cols=47 Identities=38% Similarity=0.808 Sum_probs=41.1
Q ss_pred CeecccccccccceecCCCCc-chHHHHHH-HhccCCCCcCcccccccc
Q 026172 144 EECGICLEICCKIVLPDCNHS-MCMRCYRN-WRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~-w~~~~~~CP~CR~~l~~~ 190 (242)
.+|.||+|...+.++..|||. +|..|-.+ |...+..||+||++++.+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 789999999999999899997 89999866 555889999999998743
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=1.5e-06 Score=77.92 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=38.0
Q ss_pred cCeecccccc--cccc---eecCCCCcchHHHHHHHh-ccCCCCcCcccccccccCC
Q 026172 143 EEECGICLEI--CCKI---VLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLRRVNSG 193 (242)
Q Consensus 143 ~~~C~ICl~~--~~~~---v~~~CgH~fC~~Ci~~w~-~~~~~CP~CR~~l~~~~~~ 193 (242)
+..||+|... +..- ...+|||.||..|+...+ .....||.|+.++...+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4679999994 2221 122799999999999954 5677999999998765443
No 33
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.22 E-value=1.4e-07 Score=65.17 Aligned_cols=50 Identities=30% Similarity=0.692 Sum_probs=26.9
Q ss_pred CccCeecccccccccce-ecCCCCcchHHHHHHHhccCCCCcCcccccccccC
Q 026172 141 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~ 192 (242)
++-..|++|.+.+.+|+ +..|.|.||..|+.+-+. ..||+|+.|....+.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 45578999999999997 579999999999977544 459999888654333
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.4e-07 Score=86.81 Aligned_cols=47 Identities=23% Similarity=0.653 Sum_probs=42.9
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 189 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~ 189 (242)
-..|++|.....+.+.+.|||.||..|+..... +...||.|..++..
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 479999999999999999999999999998766 89999999998873
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.8e-06 Score=77.97 Aligned_cols=49 Identities=33% Similarity=0.821 Sum_probs=44.1
Q ss_pred CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+...+|.||+....+.+++||.|. .|..|.+...-+...||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 345799999999999999999997 8999999987788999999999874
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.4e-06 Score=79.36 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=46.9
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
....+.+|.||+..+..|+.++|||+||..|+.+-+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346789999999999999999999999999999988899999999999875
No 37
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.02 E-value=3.1e-06 Score=79.78 Aligned_cols=101 Identities=22% Similarity=0.483 Sum_probs=70.8
Q ss_pred ccCCCcccchhhhhchHHHHHhhhhhhHHHhhhcCCChHHHHHHHHhHHHHhhhcccccCCCccccCCccCeeccccccc
Q 026172 74 YADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEIC 153 (242)
Q Consensus 74 ~~dg~~~~~~~~rk~sl~efy~~i~~sl~ql~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~ 153 (242)
|.|...+.+++-...++-..|+.||..+.++...... ...-.|+++.. + ..+...+.+|.+|.+.-
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDH--------P~LVl~S~~~n-----~-~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADH--------PDLVLYSANAN-----L-PDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccC--------cceeeehhhcC-----C-CccccCceeecccCChh
Confidence 5566777777777777777788888887666532221 11122222211 1 11334678999999999
Q ss_pred ccceecCCCCcchHHHHHHHhc-----cCCCCcCcccccc
Q 026172 154 CKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLR 188 (242)
Q Consensus 154 ~~~v~~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~l~ 188 (242)
.+++..+|.|.||..|+..+.. .+.+||.|-..++
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 9999999999999999988875 4689999977765
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.3e-06 Score=74.75 Aligned_cols=48 Identities=25% Similarity=0.557 Sum_probs=41.6
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~ 189 (242)
...+|+||+....-|+.+.|+|.||.-||+.-.. ...+|++||.++..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 3468999999999999999999999999988544 56779999999873
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.7e-06 Score=78.67 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=39.9
Q ss_pred CccCeeccccccccc-----------------ceecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCK-----------------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~-----------------~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~ 188 (242)
++...|+|||..+.- -+++||.|.||..|+.+|.. .+-.||.||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 456899999987651 24569999999999999999 5669999999986
No 40
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.87 E-value=5.7e-06 Score=75.71 Aligned_cols=46 Identities=35% Similarity=0.926 Sum_probs=41.5
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhc--cCCCCcCccccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRR 189 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~~ 189 (242)
.-|.||-+.-.+...-+|||..|..|+..|.. .+++||+||..++-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 57999999999988888999999999999985 48999999998873
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.9e-06 Score=75.66 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=41.1
Q ss_pred CCccCeecccccccccce-ecCCCCcchHHHHHHHhc-cCCCCcCcccccc
Q 026172 140 IEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~ 188 (242)
+..+..|+||++++...+ ...|+|.||..||..-+. ..+.||.||..+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 346689999999999654 568999999999977554 7899999999875
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.82 E-value=8e-06 Score=81.43 Aligned_cols=50 Identities=28% Similarity=0.747 Sum_probs=41.6
Q ss_pred cCCccCeecccccccc-------cceecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 139 DIEREEECGICLEICC-------KIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~-------~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
..+...+|+||...+. ...++.|.|.||..|+-+|+. .+.+||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4567789999998765 224567999999999999987 6789999998876
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.72 E-value=1.8e-05 Score=56.78 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=27.4
Q ss_pred cCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 159 PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
--|.|.||..||.+|+.....||++|++..
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 359999999999999999999999998764
No 44
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.71 E-value=2.8e-05 Score=69.75 Aligned_cols=92 Identities=18% Similarity=0.378 Sum_probs=63.9
Q ss_pred cCCccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcccc-CCchhhhhh--hhhcHHH
Q 026172 139 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY-TSEDDIVDL--ASISREN 214 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~-~~~~~~~d~--~~~~~e~ 214 (242)
++.....|.+|-..+.++.+ +-|-|+||.+||...+.....||.|...+....+..+.-. ...++++-. .-....+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE 90 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQERE 90 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHH
Confidence 44567899999999998854 6899999999999999999999999998876544333211 112222211 1134567
Q ss_pred HHHHHHhHhcCC-CCCC
Q 026172 215 LKRLFMYIDKLP-FITP 230 (242)
Q Consensus 215 l~rl~~~i~~lp-~~~p 230 (242)
+++.-+|...-| .++|
T Consensus 91 ~k~~rdFy~~~~~~d~~ 107 (331)
T KOG2660|consen 91 MKRRRDFYKSRPLVDVP 107 (331)
T ss_pred HHHHHHHHHhCCCcccC
Confidence 777777777776 4443
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.66 E-value=8.9e-06 Score=57.68 Aligned_cols=46 Identities=30% Similarity=0.855 Sum_probs=23.7
Q ss_pred cCeecccccccc-c-----cee--cCCCCcchHHHHHHHhcc-----------CCCCcCcccccc
Q 026172 143 EEECGICLEICC-K-----IVL--PDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~-~-----~v~--~~CgH~fC~~Ci~~w~~~-----------~~~CP~CR~~l~ 188 (242)
+.+|+||+.... . .+. ..|++.||..|+.+|+.. ...||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998754 2 122 389999999999999861 136999999886
No 46
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.7e-05 Score=69.33 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=39.3
Q ss_pred CccCeeccccccccc----------ceecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCK----------IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~----------~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
.++..|+||-..+.. ...++|+|+||..||+.|.. +.++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 356789999876652 34689999999999999976 7899999988664
No 47
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=1.3e-05 Score=57.07 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=36.8
Q ss_pred ccCeeccccccccc------------c-eecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172 142 REEECGICLEICCK------------I-VLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~------------~-v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~ 188 (242)
.++.|+||.-.|.. | +.--|.|.|+..||.+|+. ....||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34589999988772 1 2235999999999999987 4579999998764
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.55 E-value=3.4e-05 Score=71.65 Aligned_cols=48 Identities=31% Similarity=0.676 Sum_probs=38.6
Q ss_pred cCCccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
...+...|+||+|.+..- +...|.|+||..|+..|. ..+||+||-...
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 445668999999998743 446899999999999995 478999997544
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.51 E-value=3.7e-05 Score=64.43 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=44.2
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccC
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT 199 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~ 199 (242)
+.|.||-+.+..|+.+.|||.||..|...-......|-+|-.... ...|+..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~----G~f~V~~ 248 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY----GRFWVVS 248 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc----cceeHHh
Confidence 689999999999999999999999999888888999999966532 3456654
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.49 E-value=4.7e-05 Score=71.02 Aligned_cols=49 Identities=29% Similarity=0.727 Sum_probs=45.0
Q ss_pred CCccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 140 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.+++..|++|+..+.+|+. +.|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 4577899999999999998 499999999999999999999999988776
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00068 Score=59.55 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=42.3
Q ss_pred ccCCccCeeccccccccccee-cCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 138 IDIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 138 ~~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
.....+.+|++|-+....|.. .+|||.||..|+..-.. .+.+||.|..+..
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 345677999999999998865 46999999999988655 5799999987765
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00012 Score=67.04 Aligned_cols=41 Identities=29% Similarity=0.781 Sum_probs=31.3
Q ss_pred Ceecccccccccc----eecCCCCcchHHHHHHHhcc--C-CCCcCcc
Q 026172 144 EECGICLEICCKI----VLPDCNHSMCMRCYRNWRAR--S-QSCPFCR 184 (242)
Q Consensus 144 ~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~--~-~~CP~CR 184 (242)
..|.||.+.+... ..-.|||.||..|+.+|++. + ..||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4799996554421 12249999999999999983 3 6899998
No 53
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.32 E-value=0.0002 Score=47.19 Aligned_cols=40 Identities=20% Similarity=0.663 Sum_probs=30.9
Q ss_pred eeccccc--ccccceecCCC-----CcchHHHHHHHhc--cCCCCcCcc
Q 026172 145 ECGICLE--ICCKIVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCR 184 (242)
Q Consensus 145 ~C~ICl~--~~~~~v~~~Cg-----H~fC~~Ci~~w~~--~~~~CP~CR 184 (242)
.|-||++ .-.++...||. |.+|..|+.+|+. +..+||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 23345667785 8899999999996 466999994
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00012 Score=64.91 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=41.4
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+.|-||...+..||.+.|+|.||..|...-+.++..|++|-+.+.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 579999999999999999999999999888888999999977654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.26 E-value=0.00016 Score=49.23 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=30.3
Q ss_pred CccCeeccccccccccee-cCCCCcchHHHHHHHhc--cCCCCcC
Q 026172 141 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPF 182 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~--~~~~CP~ 182 (242)
.....|||.+..+.+|+. ..|||+|....|.+|+. +...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 345889999999999977 59999999999999994 5789998
No 56
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00057 Score=62.02 Aligned_cols=49 Identities=22% Similarity=0.606 Sum_probs=44.7
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.++..|+||.......+..||+|.-|..||.+.+.+.+.|-+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5778999999998889999999999999999999999999999887753
No 57
>PHA03096 p28-like protein; Provisional
Probab=97.12 E-value=0.00022 Score=63.67 Aligned_cols=43 Identities=28% Similarity=0.542 Sum_probs=32.6
Q ss_pred Ceeccccccccc--------ceecCCCCcchHHHHHHHhc---cCCCCcCcccc
Q 026172 144 EECGICLEICCK--------IVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDS 186 (242)
Q Consensus 144 ~~C~ICl~~~~~--------~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~ 186 (242)
-.|+||++.... .++..|.|.||..|+..|.. ...+||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 679999997652 36789999999999999986 23455555443
No 58
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00017 Score=63.82 Aligned_cols=45 Identities=31% Similarity=0.844 Sum_probs=38.1
Q ss_pred ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
...-|.||++...+.++++|||. -|.+|-... ..||+||+-+.++
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rv 344 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHH
Confidence 36789999999999999999995 799996554 5999999977643
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.90 E-value=0.00024 Score=69.95 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=43.2
Q ss_pred ccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCC
Q 026172 142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 194 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~ 194 (242)
....|++|+..+.+. ...+|+|.||..|+..|.....+||+||..+.++...+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 446788888877754 23579999999999999999999999999888665544
No 60
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00071 Score=50.98 Aligned_cols=28 Identities=25% Similarity=0.727 Sum_probs=25.7
Q ss_pred cCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172 159 PDCNHSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
-.|.|.||..||.+|+.....||+|...
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 3699999999999999999999999765
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0019 Score=59.66 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=34.5
Q ss_pred ccCeeccccccccc---ceecCCCCcchHHHHHHHhc--------cCCCCcCccc
Q 026172 142 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~--------~~~~CP~CR~ 185 (242)
.-..|.||++.... .+.+||+|.||..|...+.. ..-.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34789999998775 36789999999999999876 2456776644
No 62
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0012 Score=57.06 Aligned_cols=53 Identities=23% Similarity=0.612 Sum_probs=36.7
Q ss_pred Ceecccccccc-cc-eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCcccc
Q 026172 144 EECGICLEICC-KI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY 198 (242)
Q Consensus 144 ~~C~ICl~~~~-~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~ 198 (242)
..|..|..... ++ .++.|+|+||..|...-. ...||+|+.++.-+....+.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~slp~ 58 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRSLPT 58 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccccch
Confidence 35777776555 22 568999999999975432 2399999999876555554333
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0018 Score=58.93 Aligned_cols=47 Identities=28% Similarity=0.700 Sum_probs=35.8
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
......|.||++...+.+..+|||.-| |..-.. ...+||+||..+..
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 344578999999999999999999865 554322 34559999998764
No 64
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.60 E-value=0.0017 Score=58.95 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=43.2
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHh--ccCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR--ARSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~--~~~~~CP~CR~~l~~~ 190 (242)
..+++..|.||-+.+.-..++||+|.+|.-|..+.. ...+.||+||.....+
T Consensus 57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 445668899999999988889999999999997654 4889999999865533
No 65
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0016 Score=60.07 Aligned_cols=47 Identities=26% Similarity=0.678 Sum_probs=38.6
Q ss_pred ccCeecccccccccc-----eecCCCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI-----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-----v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
....|+||++.+.-+ +.+.|||.|-..||++|+. ....||.|...-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 347899999988743 6689999999999999996 3568999977544
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.43 E-value=0.0017 Score=43.61 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=37.0
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.+..|-.|...-...++++|||..|..|..-+ +-+.||+|-.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 44677788888778888999999999997554 56899999887753
No 67
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0025 Score=56.92 Aligned_cols=44 Identities=32% Similarity=0.757 Sum_probs=37.3
Q ss_pred Ceecccccccc------cceecCCCCcchHHHHHHHhc-cCCCCcCccccc
Q 026172 144 EECGICLEICC------KIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSL 187 (242)
Q Consensus 144 ~~C~ICl~~~~------~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l 187 (242)
..|.||-+.+. .|..+.|||++|..|+..... ....||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999988 356678999999999998776 567889999985
No 68
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.0031 Score=62.88 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=46.2
Q ss_pred HHHhHHHHhhhcccccCCCccccC----CccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 117 KEICDAKYKKKGRMDKGKLSEIDI----EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 117 ~~~~~e~~~~~~~~~~~~~~~~~~----~~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
.+...++|.+..++-+..+..... -....|..|-..+.-| |...|||.||.+|+. .+...||-|+.
T Consensus 810 d~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 810 DEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 344456666655544433332222 2336899999999977 567899999999988 57899999976
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.93 E-value=0.0042 Score=57.15 Aligned_cols=46 Identities=33% Similarity=0.629 Sum_probs=37.0
Q ss_pred CCccCeecccccccccc----eecCCCCcchHHHHHHHhc--cCCCCcCccc
Q 026172 140 IEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRD 185 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~ 185 (242)
.+-++.|..|-+.+-.. --+||.|.||.+|+..++. ...+||.||.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34568899999987622 2378999999999999887 4789999994
No 70
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.78 E-value=0.0033 Score=62.45 Aligned_cols=48 Identities=25% Similarity=0.755 Sum_probs=40.0
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhc--cCCCCcCcccccccccC
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~~~~~ 192 (242)
..|.+|++ ...++.++|||.||..|+...+. ....||.||..+.....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 77788899999999999988766 34479999998874433
No 71
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.73 E-value=0.0083 Score=62.99 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=40.4
Q ss_pred ccCeecccccccc---cceecCCCCcchHHHHHHHhcc----------CCCCcCcccccccccCCCc
Q 026172 142 REEECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR----------SQSCPFCRDSLRRVNSGDL 195 (242)
Q Consensus 142 ~~~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~----------~~~CP~CR~~l~~~~~~~~ 195 (242)
.+..|-||+..-- ..+.+.|+|.||..|.+..+++ -.+||+|..++...-..++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDL 3551 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDL 3551 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHH
Confidence 4567888886532 3478999999999999776552 3599999999886655554
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.69 E-value=0.0089 Score=44.89 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=27.7
Q ss_pred ccCCccCeecccccccccc--eecCCCCcchHHHHH
Q 026172 138 IDIEREEECGICLEICCKI--VLPDCNHSMCMRCYR 171 (242)
Q Consensus 138 ~~~~~~~~C~ICl~~~~~~--v~~~CgH~fC~~Ci~ 171 (242)
....++..|++|...+... +..||||.||..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4556778899999998854 457899999999974
No 73
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.52 E-value=0.0082 Score=54.07 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=37.4
Q ss_pred CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.+-++||||.+.+..|+.- +=||.-|..|-.+ .+..||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCccccccc
Confidence 4558999999999988753 3389999999754 5799999999987
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.39 E-value=0.026 Score=49.82 Aligned_cols=50 Identities=16% Similarity=0.384 Sum_probs=40.4
Q ss_pred CCccCeeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 140 IEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
......|||....+.. ..+.+|||+|+..++.+.. ....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 3566899999998863 3456999999999999974 467899999998743
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.13 E-value=0.021 Score=37.34 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=21.6
Q ss_pred ecccccccccc--eec--CCCCcchHHHHHHHhc-cCCCCcCccccc
Q 026172 146 CGICLEICCKI--VLP--DCNHSMCMRCYRNWRA-RSQSCPFCRDSL 187 (242)
Q Consensus 146 C~ICl~~~~~~--v~~--~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l 187 (242)
|++|.+.+... ... +||+..|..|+.+-.. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887422 222 6899999999999886 689999999874
No 76
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.12 E-value=0.012 Score=55.05 Aligned_cols=35 Identities=29% Similarity=0.686 Sum_probs=31.9
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~ 175 (242)
++++.|+||...+.+|+.++|+|..|..|.+..+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999987654
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.018 Score=50.12 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=42.6
Q ss_pred ccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 142 REEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
....|+||.+.+... ++-+|||+||..|+++.......||+|-.+++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 457899999998853 5679999999999999999999999999888744
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.98 E-value=0.034 Score=45.34 Aligned_cols=47 Identities=21% Similarity=0.551 Sum_probs=35.9
Q ss_pred CccCeecccccccccceecCCCC-----cchHHHHHHHhc--cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
..+..|-||.+..... .-||.. .-|.+|+++|.. +...|+.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4667999999886533 345643 349999999987 6789999998765
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.88 E-value=0.016 Score=51.80 Aligned_cols=42 Identities=21% Similarity=0.558 Sum_probs=35.8
Q ss_pred Ceecccccccccceec-CCCCcchHHHHHHHh-ccCCCCcCccc
Q 026172 144 EECGICLEICCKIVLP-DCNHSMCMRCYRNWR-ARSQSCPFCRD 185 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~-~~~~~CP~CR~ 185 (242)
+.|+.|-..+..++.+ -|+|.||..||..-+ ...+.||.|-.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999999988776 679999999998754 47899999943
No 80
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.86 E-value=0.022 Score=46.40 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=24.9
Q ss_pred ccCeecccccccccceecCCC------------Cc-chHHHHHHHhc
Q 026172 142 REEECGICLEICCKIVLPDCN------------HS-MCMRCYRNWRA 175 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~Cg------------H~-fC~~Ci~~w~~ 175 (242)
++..|+||||..-+.|++-|. .. -|..|+.++..
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356899999999988887552 22 26789988754
No 81
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.66 E-value=0.03 Score=44.27 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=38.9
Q ss_pred ccCeecccccccccceec----CCCCcchHHHHHHHhc---cCCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIVLP----DCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~----~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~~~ 190 (242)
.--+|.||.|.-.+...+ =||-..|..|....|. ....||.|+.+++..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 557999999987765433 2899999999988555 578999999998743
No 82
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.45 E-value=0.019 Score=51.25 Aligned_cols=47 Identities=26% Similarity=0.687 Sum_probs=37.3
Q ss_pred ccCeecccccccccc---eecCCCCcchHHHHHHHhc-----------------------cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA-----------------------RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~-----------------------~~~~CP~CR~~l~ 188 (242)
....|.||+--|.+. ..+.|-|.||..|+.+++. ....||+||..++
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 446899999888743 5688999999999977764 1247999999887
No 83
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.056 Score=48.06 Aligned_cols=46 Identities=24% Similarity=0.582 Sum_probs=34.3
Q ss_pred eecccccccc-cc----eecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172 145 ECGICLEICC-KI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 190 (242)
Q Consensus 145 ~C~ICl~~~~-~~----v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~ 190 (242)
.|++|-...- .| ..-+|+|..|.+|+...+. +...||-|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 5888876422 22 2238999999999999877 788999998776543
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.035 Score=50.16 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=37.1
Q ss_pred ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172 142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
+...|+||+..-..| ++.--|-+||..|+-++....+.||+=-.|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 447899999998877 444469999999999999999999975444
No 85
>PHA02862 5L protein; Provisional
Probab=93.76 E-value=0.066 Score=43.00 Aligned_cols=44 Identities=20% Similarity=0.708 Sum_probs=34.7
Q ss_pred CeecccccccccceecCCCC-----cchHHHHHHHhc--cCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
..|=||.+.-.+.+ -||.. .-|..|+.+|+. +...||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999999876554 44643 469999999997 6789999998765
No 86
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=0.076 Score=53.61 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.9
Q ss_pred cCCccCeeccccccccc-c-eecCCCCcchHHHHHHHh
Q 026172 139 DIEREEECGICLEICCK-I-VLPDCNHSMCMRCYRNWR 174 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~-~-v~~~CgH~fC~~Ci~~w~ 174 (242)
..+....|.+|.-.+.. | ++.+|||.||..|+.+-.
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 55678899999988663 3 567899999999997753
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.045 Score=49.15 Aligned_cols=46 Identities=26% Similarity=0.661 Sum_probs=33.7
Q ss_pred cCeecccccccc-cceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 143 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 143 ~~~C~ICl~~~~-~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
-..|.-|--.+. -..+.+|.|+||.+|.+. ...+.||.|-..+.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 456777766555 235678999999999754 2368999998877644
No 88
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.084 Score=43.90 Aligned_cols=45 Identities=27% Similarity=0.700 Sum_probs=32.4
Q ss_pred Ceecccccccccc-------eecCCCCcchHHHHHHHhcc------C-----CCCcCcccccc
Q 026172 144 EECGICLEICCKI-------VLPDCNHSMCMRCYRNWRAR------S-----QSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~------~-----~~CP~CR~~l~ 188 (242)
..|+||...--+. -...||..||.-|+..|+.. + ..||.|..|+.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4566666543322 22479999999999999872 2 38999998876
No 89
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.086 Score=45.40 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=39.3
Q ss_pred CccCeeccccccccc--ceecCCCCcchHHHHHHHhc--------cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~--~v~~~CgH~fC~~Ci~~w~~--------~~~~CP~CR~~l~ 188 (242)
.....|..|-..+.. .+.+.|-|.||.+|+..|.. .+-.||.|..++-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 355789999998874 47789999999999999976 3679999987763
No 90
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.055 Score=46.27 Aligned_cols=40 Identities=30% Similarity=0.725 Sum_probs=33.1
Q ss_pred eecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccc
Q 026172 145 ECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 145 ~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.|-.|.+.-..++++||.|. +|..|-.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999999999899999985 89999543 467999988754
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.49 E-value=0.14 Score=32.59 Aligned_cols=38 Identities=29% Similarity=0.739 Sum_probs=22.5
Q ss_pred eccccccccccee-c--CCCCcchHHHHHHHhccC--CCCcCc
Q 026172 146 CGICLEICCKIVL-P--DCNHSMCMRCYRNWRARS--QSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~~v~-~--~CgH~fC~~Ci~~w~~~~--~~CP~C 183 (242)
|.+|.+.....+. . .|+=.+|..|+..++... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788888776654 3 599999999999988743 379987
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.48 E-value=0.051 Score=35.34 Aligned_cols=37 Identities=30% Similarity=0.713 Sum_probs=24.9
Q ss_pred cccceecCCC-CcchHHHHHHHhccCCCCcCccccccc
Q 026172 153 CCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 153 ~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
|.+..+..|. |..|..|+...+.++..||+|..+++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3344456685 899999999999999999999988763
No 93
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.21 E-value=0.12 Score=47.68 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHhc-------------cCCCCcCccccccc
Q 026172 162 NHSMCMRCYRNWRA-------------RSQSCPFCRDSLRR 189 (242)
Q Consensus 162 gH~fC~~Ci~~w~~-------------~~~~CP~CR~~l~~ 189 (242)
.-..|..|+-+|+. ++..||.||+.+.-
T Consensus 312 RPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 312 RPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred cchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 34569999998875 35699999998763
No 94
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.93 E-value=0.089 Score=41.79 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=25.7
Q ss_pred cCeeccccccccc--ce-ecCCC------CcchHHHHHHHhc
Q 026172 143 EEECGICLEICCK--IV-LPDCN------HSMCMRCYRNWRA 175 (242)
Q Consensus 143 ~~~C~ICl~~~~~--~v-~~~Cg------H~fC~~Ci~~w~~ 175 (242)
..+|.||++.+.+ ++ -.+|| |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5899999999886 43 23454 7899999999954
No 95
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=91.86 E-value=0.12 Score=52.02 Aligned_cols=47 Identities=28% Similarity=0.686 Sum_probs=36.7
Q ss_pred ccCeeccccccccc--c--eecCCCCcchHHHHHHHhc-------cCCCCcCcccccc
Q 026172 142 REEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~--~--v~~~CgH~fC~~Ci~~w~~-------~~~~CP~CR~~l~ 188 (242)
+..+|.||.+.+.. + ...+|-|+||..||+.|.. ....||.|.....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44799999999873 2 2346889999999999975 3578999985544
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.59 E-value=0.11 Score=46.20 Aligned_cols=44 Identities=30% Similarity=0.686 Sum_probs=36.3
Q ss_pred ccCeecccccccc----cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 142 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~----~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
.+..||||.+.+. .+..++|||..+..|++...-.+-+||+|-+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3455999999765 4567899999999999998776699999977
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.52 E-value=0.13 Score=46.81 Aligned_cols=49 Identities=29% Similarity=0.653 Sum_probs=36.1
Q ss_pred ccCeecccccccc--ccee--cCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172 142 REEECGICLEICC--KIVL--PDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~--~~v~--~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~ 190 (242)
++.-|+.|++.+. +... -+||...|.-|+....+ -...||-||......
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3345999999866 3322 36899999999877655 467999999977643
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.19 E-value=0.056 Score=56.50 Aligned_cols=45 Identities=33% Similarity=0.794 Sum_probs=39.5
Q ss_pred CccCeecccccccc-cceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 141 EREEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 141 ~~~~~C~ICl~~~~-~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
.+...|.||.+.+. ......|||.+|..|...|...+..||.|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34568999999988 5566779999999999999999999999974
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.18 E-value=0.078 Score=52.45 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=39.7
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~ 188 (242)
...+|+||...+.+++.+.|-|.||..|+..-+. ....||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 5589999999999999999999999999866443 4679999987654
No 100
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.88 E-value=0.17 Score=32.79 Aligned_cols=38 Identities=26% Similarity=0.714 Sum_probs=24.2
Q ss_pred eccccccccc--ceecCCCC-----cchHHHHHHHhc--cCCCCcCc
Q 026172 146 CGICLEICCK--IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFC 183 (242)
Q Consensus 146 C~ICl~~~~~--~v~~~CgH-----~fC~~Ci~~w~~--~~~~CP~C 183 (242)
|-||++.-.+ +...||+- ..|..|+.+|+. +..+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688876553 34566643 469999999998 67789887
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.87 E-value=0.14 Score=44.52 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=35.3
Q ss_pred ccCeecccccccc-cc-----eecCCCCcchHHHHHHHhc-cCCCCc--Ccccccc
Q 026172 142 REEECGICLEICC-KI-----VLPDCNHSMCMRCYRNWRA-RSQSCP--FCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~-~~-----v~~~CgH~fC~~Ci~~w~~-~~~~CP--~CR~~l~ 188 (242)
.+..||||...-- .| +.|.|-|.+|.+|+.+.++ +...|| -|..-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 4568999997532 22 3356999999999999877 577999 7866554
No 102
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=0.18 Score=49.48 Aligned_cols=38 Identities=32% Similarity=0.709 Sum_probs=30.6
Q ss_pred ccCeecccccccc----cceecCCCCcchHHHHHHHhccCCCCc
Q 026172 142 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCP 181 (242)
Q Consensus 142 ~~~~C~ICl~~~~----~~v~~~CgH~fC~~Ci~~w~~~~~~CP 181 (242)
+-..|+||+..|. .|+.+-|||+.|..|++... ..+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 4578999988776 57889999999999998754 45677
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.25 Score=45.75 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=34.0
Q ss_pred Ceecccccccc---cceecCCCCcchHHHHHHHhcc---CCCCcCcccc
Q 026172 144 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDS 186 (242)
Q Consensus 144 ~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~---~~~CP~CR~~ 186 (242)
+.|||=.+.-. .|+.+.|||+.+..-+.+...+ +..||.|-..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 68998766544 5788899999999999997662 4799999543
No 104
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=0.47 Score=45.05 Aligned_cols=35 Identities=29% Similarity=0.780 Sum_probs=30.7
Q ss_pred CccCeeccccccccc-ceecCCCCcchHHHHHHHhc
Q 026172 141 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~-~v~~~CgH~fC~~Ci~~w~~ 175 (242)
....+|.||.+.... ...+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 456899999999985 67789999999999999876
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.94 E-value=0.48 Score=31.14 Aligned_cols=42 Identities=19% Similarity=0.517 Sum_probs=20.5
Q ss_pred Ceeccccccccccee-cCCCCcchHHHHHHHhc-----cCCCCcCcccc
Q 026172 144 EECGICLEICCKIVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS 186 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~-----~~~~CP~CR~~ 186 (242)
+.|++....+..|+. ..|.|.-|.+= ..|+. ....||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 579999999998876 68999865322 23333 45789999764
No 106
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=85.36 E-value=0.86 Score=32.79 Aligned_cols=53 Identities=23% Similarity=0.638 Sum_probs=21.9
Q ss_pred ccCeecccccccc-----cc--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCC
Q 026172 142 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGD 194 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~ 194 (242)
....|.||-+..- ++ ..-.|+-..|..|++- ....++.||.|+.+.++..-..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp 68 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSP 68 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCC
Confidence 3467999998765 22 2346788889999965 4458999999999887654443
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=0.6 Score=43.60 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=25.7
Q ss_pred ccCeecccc-ccccc---ceecCCCCcchHHHHHHHhc
Q 026172 142 REEECGICL-EICCK---IVLPDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 142 ~~~~C~ICl-~~~~~---~v~~~CgH~fC~~Ci~~w~~ 175 (242)
...+|.||. +.... .....|+|.||..|+.+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 467899999 44332 12467999999999998876
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.17 E-value=0.61 Score=41.74 Aligned_cols=28 Identities=29% Similarity=0.696 Sum_probs=22.9
Q ss_pred CCCcchHHHHHHHhc-------------cCCCCcCcccccc
Q 026172 161 CNHSMCMRCYRNWRA-------------RSQSCPFCRDSLR 188 (242)
Q Consensus 161 CgH~fC~~Ci~~w~~-------------~~~~CP~CR~~l~ 188 (242)
|....|.+|+.+|+. ++-+||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 456689999998875 4679999999876
No 109
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.19 E-value=0.74 Score=46.15 Aligned_cols=26 Identities=23% Similarity=0.585 Sum_probs=23.2
Q ss_pred eecCCCCcchHHHHHHHhccCCCCcC
Q 026172 157 VLPDCNHSMCMRCYRNWRARSQSCPF 182 (242)
Q Consensus 157 v~~~CgH~fC~~Ci~~w~~~~~~CP~ 182 (242)
+...|+|..|..|...|++....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 45689999999999999998888885
No 110
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.87 E-value=2.9 Score=36.81 Aligned_cols=61 Identities=16% Similarity=0.308 Sum_probs=45.4
Q ss_pred ccCeeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccccCCchhhhhh
Q 026172 142 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDL 207 (242)
Q Consensus 142 ~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~d~ 207 (242)
....|+|---.+.. ..+..|||+|-.+-+.+. ....|++|.+.+. -.+..+++...|.+|.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~---~~dvIvlNg~~E~~dl 174 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ---EDDVIVLNGTEEDVDL 174 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc---ccCeEeeCCCHHHHHH
Confidence 45789987666553 356789999999888776 4789999999876 3456666766665665
No 111
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.50 E-value=1.5 Score=38.41 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~ 175 (242)
.+.+..-|+.|+..+.+|+..+=||.||..||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3445677899999999999999999999999988753
No 112
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=79.46 E-value=2.4 Score=44.35 Aligned_cols=58 Identities=28% Similarity=0.579 Sum_probs=41.6
Q ss_pred ccCeeccccccccc-----c--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCCccccCC
Q 026172 142 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTS 200 (242)
Q Consensus 142 ~~~~C~ICl~~~~~-----~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 200 (242)
....|.||-+.... + ..-.|+-..|..|++- ..+.++.||.|+...++.. ...++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCcc
Confidence 33589999998651 2 3446888899999944 4458999999999988654 34455554
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.85 E-value=1.1 Score=45.14 Aligned_cols=47 Identities=11% Similarity=0.343 Sum_probs=33.8
Q ss_pred ccCeecccccccccc-------eecCCCCcchHHHHHHHhc------cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~------~~~~CP~CR~~l~ 188 (242)
+...|.+|...+..+ .+-.|+|.||..||..|.. ....|++|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 345667766666542 2235999999999999987 3568999987654
No 114
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=1.9 Score=37.95 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCccCeecccccccccce----ecCC-----CCcchHHHHHHHhc--------cCCCCcCcccccccccCCCc
Q 026172 140 IEREEECGICLEICCKIV----LPDC-----NHSMCMRCYRNWRA--------RSQSCPFCRDSLRRVNSGDL 195 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v----~~~C-----gH~fC~~Ci~~w~~--------~~~~CP~CR~~l~~~~~~~~ 195 (242)
.+.|..|=||+..-++-. .-|| .|-.|..|+..|.. +..+||.|+....-+-+...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~ 89 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLG 89 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccC
Confidence 456678899998766431 2245 35689999999987 34689999987665444443
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=1.5 Score=39.09 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=28.8
Q ss_pred ccCeecccccccccceecCC----CCcchHHHHHHHhc
Q 026172 142 REEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 175 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~C----gH~fC~~Ci~~w~~ 175 (242)
..+.|.+|.|.+++.....| .|.||.-|-++...
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34899999999998876666 79999999988775
No 116
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.02 E-value=0.37 Score=44.65 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=39.3
Q ss_pred Ceeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 144 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 144 ~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
..|.||.+.+.. .....|||.++..|+++|+.....||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 579999987663 3457799999999999999999999999998764
No 117
>PLN02189 cellulose synthase
Probab=73.34 E-value=2.7 Score=43.77 Aligned_cols=57 Identities=25% Similarity=0.657 Sum_probs=40.5
Q ss_pred ccCeecccccccc-----cc--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCCccccC
Q 026172 142 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYT 199 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 199 (242)
....|.||-+... ++ ..-.|+-..|..|++- ..+.++.||.|+...++.+ ...++..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k-gs~~v~g 97 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK-GSPRVEG 97 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCC
Confidence 3358999999865 12 3346888899999954 3448999999999988655 3334444
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=1.8 Score=40.50 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=31.2
Q ss_pred ccCeeccccccccc-----ceecCCCCcchHHHHHHHhccCCCCcCc
Q 026172 142 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFC 183 (242)
Q Consensus 142 ~~~~C~ICl~~~~~-----~v~~~CgH~fC~~Ci~~w~~~~~~CP~C 183 (242)
.-..|+.|.-.+.. .+.=.|||-||..|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 34678888877652 1333499999999999998887777655
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.52 E-value=3.9 Score=41.17 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=35.0
Q ss_pred Ceecccccccccc--eecCCCCcchHHHHHHHhccCCCCcC--ccccc
Q 026172 144 EECGICLEICCKI--VLPDCNHSMCMRCYRNWRARSQSCPF--CRDSL 187 (242)
Q Consensus 144 ~~C~ICl~~~~~~--v~~~CgH~fC~~Ci~~w~~~~~~CP~--CR~~l 187 (242)
..|.+|-..+... -..-|||..|..|+.+|+.....||. |-..-
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccc
Confidence 4688888777644 34579999999999999999999998 75443
No 120
>PLN02436 cellulose synthase A
Probab=70.25 E-value=3.5 Score=43.15 Aligned_cols=57 Identities=23% Similarity=0.599 Sum_probs=40.0
Q ss_pred ccCeecccccccc-----cc--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCCccccC
Q 026172 142 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYT 199 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~ 199 (242)
....|.||-+... ++ ..--|+-..|..|++- ..+.++.||.|+...++... ..++..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kg-s~~~~~ 99 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKG-SPRVEG 99 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccC-CCCcCC
Confidence 3358999999864 12 3345888899999954 34479999999999886553 334443
No 121
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.05 E-value=2.7 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=10.8
Q ss_pred eecccccccccc--eecCCCCcc
Q 026172 145 ECGICLEICCKI--VLPDCNHSM 165 (242)
Q Consensus 145 ~C~ICl~~~~~~--v~~~CgH~f 165 (242)
.||-|....... ..+.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 355565554422 335566655
No 122
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=69.97 E-value=4 Score=37.07 Aligned_cols=48 Identities=27% Similarity=0.685 Sum_probs=32.3
Q ss_pred CccCeecccccccc--------------c---c--eecCCCCcchHHHHHHHhc---------cCCCCcCcccccc
Q 026172 141 EREEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRA---------RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~--------------~---~--v~~~CgH~fC~~Ci~~w~~---------~~~~CP~CR~~l~ 188 (242)
..+.+|++|+..-. + | ...||||.--.+=..-|.. -...||+|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34679999997522 1 1 3358999765666666755 2569999987764
No 123
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=69.73 E-value=3.8 Score=41.65 Aligned_cols=48 Identities=19% Similarity=0.538 Sum_probs=37.1
Q ss_pred ccCeecccccccc--cceecCCCCc-----chHHHHHHHhc--cCCCCcCccccccc
Q 026172 142 REEECGICLEICC--KIVLPDCNHS-----MCMRCYRNWRA--RSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~--~~v~~~CgH~-----fC~~Ci~~w~~--~~~~CP~CR~~l~~ 189 (242)
+...|-||...-. +|..-||..+ .|.+|+..|.. +...|-+|..++..
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 5578999987644 5665567543 79999999998 67899999988763
No 124
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=69.19 E-value=4.1 Score=36.99 Aligned_cols=47 Identities=6% Similarity=-0.132 Sum_probs=37.9
Q ss_pred cCCccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSL 187 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l 187 (242)
.+-...+|.+|-+-....+..+|+|. ||..|.. ...+.+||.|....
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 44456889999998888888899995 9999986 56789999996643
No 125
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.06 E-value=2.8 Score=38.01 Aligned_cols=43 Identities=23% Similarity=0.553 Sum_probs=33.4
Q ss_pred cCeecccccccc---cceecCCCCcchHHHHHHHhc---cCCCCcCccc
Q 026172 143 EEECGICLEICC---KIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRD 185 (242)
Q Consensus 143 ~~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~ 185 (242)
-..||+=-+... .|+.+.|||..-..-+++... .++.||.|-.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 367887665544 578899999999999988765 4689999944
No 126
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=68.81 E-value=4.1 Score=42.52 Aligned_cols=58 Identities=21% Similarity=0.511 Sum_probs=41.5
Q ss_pred ccCeecccccccc-----cc--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCCccccCC
Q 026172 142 REEECGICLEICC-----KI--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTS 200 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 200 (242)
....|.||-+... ++ ..-.|+-..|..|++- ..+.++.||.|+...++.. ...++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 4467999999855 22 3346888899999944 3448999999999988654 44455554
No 127
>PLN02400 cellulose synthase
Probab=68.65 E-value=3.5 Score=43.17 Aligned_cols=58 Identities=24% Similarity=0.603 Sum_probs=41.0
Q ss_pred ccCeeccccccccc-----c--eecCCCCcchHHHHHH-HhccCCCCcCcccccccccCCCccccCC
Q 026172 142 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVNSGDLWIYTS 200 (242)
Q Consensus 142 ~~~~C~ICl~~~~~-----~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~~~~~~~~~~~ 200 (242)
....|.||-+.... + ..-.|+-..|..|++- ..+.++.||.|+...++.. ...++..+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~GD 100 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEGD 100 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCcc
Confidence 33589999998652 2 3446888899999943 3458999999999988654 34445443
No 128
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.15 E-value=5.3 Score=30.85 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=32.9
Q ss_pred Ceecccccccccc--------------eecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172 144 EECGICLEICCKI--------------VLPDCNHSMCMRCYRNWRARSQSCPFCR 184 (242)
Q Consensus 144 ~~C~ICl~~~~~~--------------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR 184 (242)
..|--|+..|.++ ....|++.||.+|=.-+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588898877643 1578999999999877888888899995
No 129
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.36 E-value=4.7 Score=40.20 Aligned_cols=46 Identities=28% Similarity=0.634 Sum_probs=38.0
Q ss_pred eecccccccccceecCCCC-cchHHHHHHHhc--c----CCCCcCcccccccc
Q 026172 145 ECGICLEICCKIVLPDCNH-SMCMRCYRNWRA--R----SQSCPFCRDSLRRV 190 (242)
Q Consensus 145 ~C~ICl~~~~~~v~~~CgH-~fC~~Ci~~w~~--~----~~~CP~CR~~l~~~ 190 (242)
.|+||-....-....+||| ..|..|..+... . ...||.||..+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999999998888899999 799999987644 3 67889999866543
No 130
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=64.70 E-value=1.9 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=18.5
Q ss_pred cCCccCeecccccccccc----eecCCCCcchHHHHHHH
Q 026172 139 DIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNW 173 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w 173 (242)
...+...|.+|...|.-. ..-.||+.||..|....
T Consensus 5 ~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 5 PDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp SGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 345668899999998632 33579999999997543
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=63.26 E-value=1.5 Score=39.18 Aligned_cols=45 Identities=24% Similarity=0.517 Sum_probs=23.6
Q ss_pred CccCeecccccccccceecCC-----CCcchHHHHHHHhccCCCCcCccc
Q 026172 141 EREEECGICLEICCKIVLPDC-----NHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~C-----gH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
.....||||-....-.++..= .|.+|.-|-..|......||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 345799999998664433222 456899999999988889999954
No 132
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=62.26 E-value=7.8 Score=25.65 Aligned_cols=27 Identities=26% Similarity=0.780 Sum_probs=16.4
Q ss_pred ecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172 158 LPDCNHSMCMRCYRNWRARSQSCPFCR 184 (242)
Q Consensus 158 ~~~CgH~fC~~Ci~~w~~~~~~CP~CR 184 (242)
.+.|++.||..|=.=..+.--.||-|-
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcChhhhccccCCcCCC
Confidence 368999999999544455678899883
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=61.84 E-value=2.6 Score=39.32 Aligned_cols=46 Identities=22% Similarity=0.641 Sum_probs=0.0
Q ss_pred cCeecccccccc--------------c---c--eecCCCCcchHHHHHHHhc---------cCCCCcCcccccc
Q 026172 143 EEECGICLEICC--------------K---I--VLPDCNHSMCMRCYRNWRA---------RSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~--------------~---~--v~~~CgH~fC~~Ci~~w~~---------~~~~CP~CR~~l~ 188 (242)
..+|++|+..-. + | ..-||||.--.+..+-|.. -...||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996522 1 1 3458999887888888876 1369999988876
No 134
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=58.17 E-value=1 Score=31.78 Aligned_cols=43 Identities=23% Similarity=0.489 Sum_probs=24.2
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
+..||.|...+.... +|.+|..|-.. ......||-|..++...
T Consensus 1 e~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-EEE
T ss_pred CCcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHHHH
Confidence 357999988866322 78888888765 33567899999888643
No 136
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=58.06 E-value=2.4 Score=38.40 Aligned_cols=45 Identities=18% Similarity=0.456 Sum_probs=33.7
Q ss_pred ccCeeccccccccccee-c---CCC--CcchHHHHHHHhccCCCCcCcccc
Q 026172 142 REEECGICLEICCKIVL-P---DCN--HSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~-~---~Cg--H~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
....||||-....-.++ . .=| |.+|..|-..|......||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34589999998753322 1 234 567999999999999999999653
No 137
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.04 E-value=7.2 Score=39.14 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=36.5
Q ss_pred CccCeecccccccccc----------eecCCCCcc--------------------hHHHHHHHhc--------cCCCCcC
Q 026172 141 EREEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPF 182 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~----------v~~~CgH~f--------------------C~~Ci~~w~~--------~~~~CP~ 182 (242)
.+-..|.-|++.+.+| ..++||-.| |..|-+.+.. +...||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 3457899999987754 457888887 9999988765 5679999
Q ss_pred cccccc
Q 026172 183 CRDSLR 188 (242)
Q Consensus 183 CR~~l~ 188 (242)
|--.+.
T Consensus 179 CGP~~~ 184 (750)
T COG0068 179 CGPHLF 184 (750)
T ss_pred cCCCeE
Confidence 955443
No 138
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=57.82 E-value=6.8 Score=33.61 Aligned_cols=44 Identities=23% Similarity=0.577 Sum_probs=36.7
Q ss_pred Ceecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccccc
Q 026172 144 EECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187 (242)
Q Consensus 144 ~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l 187 (242)
..|.+|....... ..-+|+-.++..|+..++.+...||.|..-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 5899999986654 4578888999999999999999999995543
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=57.63 E-value=8 Score=35.28 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=35.9
Q ss_pred Ceeccccccccc---c-eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCK---I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~---~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|+||-+.... . +-.+||+..|..|...-......||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 689999997642 1 22478999999999888889999999996654
No 140
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=56.35 E-value=5.4 Score=39.20 Aligned_cols=24 Identities=29% Similarity=0.798 Sum_probs=18.4
Q ss_pred cCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 159 PDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
..|++.||..|+.. .+..||.|-.
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCchHH
Confidence 46999999999544 5666999943
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.61 E-value=2.2 Score=37.96 Aligned_cols=44 Identities=30% Similarity=0.641 Sum_probs=33.9
Q ss_pred cCeecccccccc------cceecC--------CCCcchHHHHHHHhc-cCCCCcCcccc
Q 026172 143 EEECGICLEICC------KIVLPD--------CNHSMCMRCYRNWRA-RSQSCPFCRDS 186 (242)
Q Consensus 143 ~~~C~ICl~~~~------~~v~~~--------CgH~fC~~Ci~~w~~-~~~~CP~CR~~ 186 (242)
+..|.||...+. .|.++. |||..|..|+..-+. ....||+|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356999988777 234445 999999999988765 34799999874
No 142
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=53.30 E-value=4.1 Score=37.02 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=33.4
Q ss_pred ccCeeccccccccccee---cCCC--CcchHHHHHHHhccCCCCcCccc
Q 026172 142 REEECGICLEICCKIVL---PDCN--HSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~---~~Cg--H~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
....||||-....-.+. ..=| |..|..|-..|.-....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 56899999998653322 1234 45799999999999999999975
No 143
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=52.26 E-value=12 Score=32.61 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=23.5
Q ss_pred chHHHHHHHhccCCCCcCcccccccccCC
Q 026172 165 MCMRCYRNWRARSQSCPFCRDSLRRVNSG 193 (242)
Q Consensus 165 fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~ 193 (242)
-|.+|-.+...+...||+|++.-...++.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnpK 224 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNPK 224 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCCC
Confidence 39999999999999999998876544443
No 144
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=50.86 E-value=3.2 Score=27.70 Aligned_cols=17 Identities=41% Similarity=1.251 Sum_probs=14.4
Q ss_pred cCCCCcchHHHHHHHhc
Q 026172 159 PDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 159 ~~CgH~fC~~Ci~~w~~ 175 (242)
+.|+|.||..|...|..
T Consensus 44 ~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 44 PKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCeECCCCCCcCCC
Confidence 47999999999988854
No 145
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=50.72 E-value=12 Score=32.46 Aligned_cols=27 Identities=26% Similarity=0.776 Sum_probs=22.2
Q ss_pred hHHHHHHHhccCCCCcCcccccccccC
Q 026172 166 CMRCYRNWRARSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 166 C~~Ci~~w~~~~~~CP~CR~~l~~~~~ 192 (242)
|.+|-.+...+...||+|++.....++
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRSRNP 278 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhccccCCC
Confidence 899999988899999999887654444
No 146
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=50.71 E-value=8.9 Score=26.75 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=8.6
Q ss_pred cchHHHHHHHhc
Q 026172 164 SMCMRCYRNWRA 175 (242)
Q Consensus 164 ~fC~~Ci~~w~~ 175 (242)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 147
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=49.14 E-value=14 Score=24.70 Aligned_cols=30 Identities=20% Similarity=0.596 Sum_probs=24.2
Q ss_pred cCeecccccccc--c--ceecCCCCcchHHHHHH
Q 026172 143 EEECGICLEICC--K--IVLPDCNHSMCMRCYRN 172 (242)
Q Consensus 143 ~~~C~ICl~~~~--~--~v~~~CgH~fC~~Ci~~ 172 (242)
...|++|-+.+. + .+.+.||-.+|..|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 467999999995 2 35589999999999755
No 148
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.81 E-value=10 Score=39.64 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=34.1
Q ss_pred ccCeecccccccccceecCCCC-----cchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVLPDCNH-----SMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH-----~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
....|+-|-.......++.||. .||..| .+......||-|...+.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 3468999998877777889984 599999 33345578999987765
No 149
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=47.52 E-value=6.2 Score=36.90 Aligned_cols=43 Identities=30% Similarity=0.682 Sum_probs=0.0
Q ss_pred Ceecccccccc-------------cc-eecCCCCcchHHHHHHHhc------cCCCCcCccccccc
Q 026172 144 EECGICLEICC-------------KI-VLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSLRR 189 (242)
Q Consensus 144 ~~C~ICl~~~~-------------~~-v~~~CgH~fC~~Ci~~w~~------~~~~CP~CR~~l~~ 189 (242)
..|||=+..+. .| +-++|||++-. ..|-. +..+||+||..-+.
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCccccCCc
Confidence 56777765544 12 55789998665 34543 36799999986553
No 150
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=47.25 E-value=22 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHhc---------cCCCCcCcccc
Q 026172 162 NHSMCMRCYRNWRA---------RSQSCPFCRDS 186 (242)
Q Consensus 162 gH~fC~~Ci~~w~~---------~~~~CP~CR~~ 186 (242)
.=.||..|+..+.. ....||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 56799999977653 45789999873
No 151
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.92 E-value=7.3 Score=35.15 Aligned_cols=53 Identities=26% Similarity=0.516 Sum_probs=42.6
Q ss_pred ccCeeccccccccccee-cCCCCcchHHHHHHHhccCCCCcCcccccccccCCC
Q 026172 142 REEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 194 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~ 194 (242)
....|-+|...+..+.. -.|+|.||..|-..|.....-||.|+.....+....
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~aG~ 157 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLAGM 157 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCceeccC
Confidence 45678899988886644 359999999999999999999999998776544443
No 152
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.05 E-value=16 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=21.7
Q ss_pred Ceeccccccccc----ceecCCCCcchHHHHHHH
Q 026172 144 EECGICLEICCK----IVLPDCNHSMCMRCYRNW 173 (242)
Q Consensus 144 ~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w 173 (242)
..|.+|...|.. .....||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 468888776663 234579999999997654
No 153
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=44.73 E-value=8.9 Score=29.56 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=28.4
Q ss_pred ccCeecccccccc-----cceecCCCCcchHHHHHHH-hccCCCCcCccc
Q 026172 142 REEECGICLEICC-----KIVLPDCNHSMCMRCYRNW-RARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~v~~~CgH~fC~~Ci~~w-~~~~~~CP~CR~ 185 (242)
.+..|.+|...|. ..+...|+|.+|..|-..- ......|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 5678999988754 2356789999999996441 113446777754
No 154
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=43.52 E-value=6.8 Score=39.91 Aligned_cols=45 Identities=27% Similarity=0.719 Sum_probs=34.3
Q ss_pred cCeeccccccccc--ceecCCCCcchHHHHHHHhc------cCCCCcCccccc
Q 026172 143 EEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA------RSQSCPFCRDSL 187 (242)
Q Consensus 143 ~~~C~ICl~~~~~--~v~~~CgH~fC~~Ci~~w~~------~~~~CP~CR~~l 187 (242)
...|-.|...... -+...|||.+|..|++.|.- ....|++|+..-
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3678999987764 36789999999999999941 345777776543
No 155
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.35 E-value=15 Score=21.33 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=20.1
Q ss_pred eccccccccc--ceecCCCCcchHHHHHHHhccCCCCcCccccc
Q 026172 146 CGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 187 (242)
Q Consensus 146 C~ICl~~~~~--~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l 187 (242)
|..|.+.+.. .....=+..||..| ..|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 6667776654 23333355666666 6777776655
No 156
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.61 E-value=8 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=19.4
Q ss_pred ccCeecccccccccc---eecCCCCcchH
Q 026172 142 REEECGICLEICCKI---VLPDCNHSMCM 167 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~ 167 (242)
+.-+|.||+|.+... ..+||-..||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 457999999998843 45789776654
No 157
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=24 Score=35.93 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=29.9
Q ss_pred ccCeecccccccc-------cceecCCCCcchHHHHHHHhccCCCCcCc
Q 026172 142 REEECGICLEICC-------KIVLPDCNHSMCMRCYRNWRARSQSCPFC 183 (242)
Q Consensus 142 ~~~~C~ICl~~~~-------~~v~~~CgH~fC~~Ci~~w~~~~~~CP~C 183 (242)
.+..|.-|.+..- ..+...|||.||..|+.....++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 4458999998755 346678999999999977655444 5444
No 158
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=42.17 E-value=26 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.477 Sum_probs=27.1
Q ss_pred eecccccccccce--ecCCC--CcchHHHHHHHhccCCCCcCccccccc
Q 026172 145 ECGICLEICCKIV--LPDCN--HSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 145 ~C~ICl~~~~~~v--~~~Cg--H~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.|--|-..+.... -.-|. .+||..|....+ ...||.|...+.+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3555555444211 11254 379999998876 5789999887653
No 159
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.60 E-value=16 Score=29.19 Aligned_cols=46 Identities=28% Similarity=0.712 Sum_probs=26.8
Q ss_pred cCCccCeecccccc-cccceecCCCC-------cchHHHHHHHhcc----CCCCcCcccccc
Q 026172 139 DIEREEECGICLEI-CCKIVLPDCNH-------SMCMRCYRNWRAR----SQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~-~~~~v~~~CgH-------~fC~~Ci~~w~~~----~~~CP~CR~~l~ 188 (242)
...++..|.||... |.+. ||| .||..|--+...+ ...|-.|+....
T Consensus 61 Gv~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred ccCcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 55678899999975 5454 555 3445553222112 246777766543
No 160
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=40.85 E-value=24 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.573 Sum_probs=35.3
Q ss_pred cCeeccccccccc----ceecCCC-----CcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 143 EEECGICLEICCK----IVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~~----~v~~~Cg-----H~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
+..|-||...... +...+|. +..|..|+..|.. +...|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999996653 3455664 2369999999998 7899999987655
No 161
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.06 E-value=5.1 Score=21.92 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=4.6
Q ss_pred cCCCCcCccc
Q 026172 176 RSQSCPFCRD 185 (242)
Q Consensus 176 ~~~~CP~CR~ 185 (242)
..+-||.|-.
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 3444555543
No 162
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.70 E-value=14 Score=29.40 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=16.9
Q ss_pred ecccccccccceecCCCCcchH
Q 026172 146 CGICLEICCKIVLPDCNHSMCM 167 (242)
Q Consensus 146 C~ICl~~~~~~v~~~CgH~fC~ 167 (242)
=-||.+.-...+.-.|||+||.
T Consensus 60 lfi~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEEEecccccEEEEeccccccC
Confidence 3477777777677789999985
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=37.99 E-value=23 Score=32.49 Aligned_cols=43 Identities=19% Similarity=0.431 Sum_probs=30.4
Q ss_pred ccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCcc
Q 026172 142 REEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCR 184 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR 184 (242)
....|-.|.+..... ....|.|.||..|=.-..+.-..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 344588886655532 3467999999999665556667899985
No 164
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.46 E-value=18 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=20.9
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhc--cCCCCcCccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRD 185 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~ 185 (242)
...||.|.+.+... .+ ...|...-.. +...||+|..
T Consensus 2 ~f~CP~C~~~~~~~-~L------~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-SL------VEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHH-HH------HHHHHhHCcCCCCCccCCCchh
Confidence 46799998854432 22 2334333222 4678999965
No 165
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=36.66 E-value=7.7 Score=24.30 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=16.7
Q ss_pred cCCCCcchHHHHHHHhccCCCCcCccc-cccc
Q 026172 159 PDCNHSMCMRCYRNWRARSQSCPFCRD-SLRR 189 (242)
Q Consensus 159 ~~CgH~fC~~Ci~~w~~~~~~CP~CR~-~l~~ 189 (242)
..|||.|-...-..= .....||.|.. .+.+
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCCCceEE
Confidence 457776644221100 24678999987 5544
No 166
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=36.36 E-value=30 Score=32.97 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.4
Q ss_pred cCCCccccCCccCeecccccccccc----eecCCCCcchHHHHHHH
Q 026172 132 KGKLSEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNW 173 (242)
Q Consensus 132 ~~~~~~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w 173 (242)
+..++|.+......||+|-..|.-. ..--||-++|..|..-.
T Consensus 169 qsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i 214 (505)
T KOG1842|consen 169 QSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI 214 (505)
T ss_pred hccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhc
Confidence 3447788888889999999999833 23349999999997553
No 167
>PLN02195 cellulose synthase A
Probab=34.78 E-value=28 Score=36.39 Aligned_cols=46 Identities=17% Similarity=0.455 Sum_probs=34.6
Q ss_pred cCeecccccccc-----cc--eecCCCCcchHHHHHHH-hccCCCCcCcccccc
Q 026172 143 EEECGICLEICC-----KI--VLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~-----~~--v~~~CgH~fC~~Ci~~w-~~~~~~CP~CR~~l~ 188 (242)
...|.||-+... ++ ..-.|+-..|..|++-= .++++.||.|+...+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 357999998655 22 34568888999999442 347999999999877
No 168
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=33.51 E-value=27 Score=29.53 Aligned_cols=39 Identities=28% Similarity=0.678 Sum_probs=27.0
Q ss_pred ccCeecccccc-----ccc---ceecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 142 REEECGICLEI-----CCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~-----~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
....|.+|.+. |.. .....|+-.||..|+.+ ..||-|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 34678889863 111 13468999999999652 77999943
No 169
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.44 E-value=36 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHhccCCCCcCccccccc
Q 026172 162 NHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 162 gH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.|+||..|.+.-+ ...||.|-..+..
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 5789999998654 5789999887653
No 170
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.40 E-value=30 Score=26.72 Aligned_cols=25 Identities=24% Similarity=0.729 Sum_probs=17.7
Q ss_pred ecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 158 LPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 158 ~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.|+|+|. ...+.+...|+.|+.|++
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLT 96 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCc
Confidence 3567763 233556789999999987
No 171
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.20 E-value=14 Score=30.17 Aligned_cols=70 Identities=19% Similarity=0.431 Sum_probs=39.8
Q ss_pred CCcchHHHHHHHhccCCCCcCccccccccc-------CCCc---------------cccCC---chhhhh-hhhhcHHHH
Q 026172 162 NHSMCMRCYRNWRARSQSCPFCRDSLRRVN-------SGDL---------------WIYTS---EDDIVD-LASISRENL 215 (242)
Q Consensus 162 gH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~-------~~~~---------------~~~~~---~~~~~d-~~~~~~e~l 215 (242)
.+.||.+|-.+- -..||.|..++.-.- .... |.... ..++++ ..+++.++-
T Consensus 27 ~~~fC~kCG~~t---I~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~dek 103 (158)
T PF10083_consen 27 REKFCSKCGAKT---ITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEK 103 (158)
T ss_pred HHHHHHHhhHHH---HHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHH
Confidence 456888887664 357888877765110 0011 22211 123333 566777777
Q ss_pred HHHHHhHhcCCCCCCCcce
Q 026172 216 KRLFMYIDKLPFITPNPTL 234 (242)
Q Consensus 216 ~rl~~~i~~lp~~~p~~~~ 234 (242)
+.|..-+..|-.+-|....
T Consensus 104 e~~~~sl~dL~~d~PkT~v 122 (158)
T PF10083_consen 104 EQFKESLPDLTKDTPKTKV 122 (158)
T ss_pred HHHHhhhHHHhhcCCccHH
Confidence 7777777777777775543
No 172
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=31.01 E-value=26 Score=35.49 Aligned_cols=24 Identities=25% Similarity=0.865 Sum_probs=18.2
Q ss_pred chHHHHHHHhc--------cCCCCcCcccccc
Q 026172 165 MCMRCYRNWRA--------RSQSCPFCRDSLR 188 (242)
Q Consensus 165 fC~~Ci~~w~~--------~~~~CP~CR~~l~ 188 (242)
+|..|...+.. +..+||.|--.+.
T Consensus 120 ~C~~C~~ey~~p~~rr~h~~~~~C~~Cgp~l~ 151 (711)
T TIGR00143 120 LCPDCAKEYKDPLDRRFHAQPIACPRCGPQLN 151 (711)
T ss_pred CCHHHHHHhcCCccccCCCCCccCCCCCcEEE
Confidence 39999999854 3579999965554
No 173
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.24 E-value=38 Score=35.60 Aligned_cols=19 Identities=47% Similarity=0.576 Sum_probs=17.7
Q ss_pred chHHHHHHHHHhhhhhHhh
Q 026172 4 SFKDSLKALEADIQLANTL 22 (242)
Q Consensus 4 ~~~~~~~~~~~~i~~an~l 22 (242)
-|+.||+.|.+||-+||+|
T Consensus 653 mf~~SL~rLr~~iv~AN~L 671 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTL 671 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888
No 174
>PF14353 CpXC: CpXC protein
Probab=29.24 E-value=33 Score=26.48 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=23.0
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~ 188 (242)
.+||-|...+...+-+.-.-..-..=....+. ...+||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46777776665332221111112223333333 4679999987664
No 175
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.61 E-value=20 Score=23.44 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=5.8
Q ss_pred CCcCccccccc
Q 026172 179 SCPFCRDSLRR 189 (242)
Q Consensus 179 ~CP~CR~~l~~ 189 (242)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999888763
No 176
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.24 E-value=9 Score=24.47 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=24.5
Q ss_pred eecccccccccc---eecCCCCcchHHHHHHHhc------cCCCCcCcc
Q 026172 145 ECGICLEICCKI---VLPDCNHSMCMRCYRNWRA------RSQSCPFCR 184 (242)
Q Consensus 145 ~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~------~~~~CP~CR 184 (242)
.|.||....... .--.|+..||..|+..-.. ....||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 377787733322 1246888899999854322 356787774
No 177
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=36 Score=33.24 Aligned_cols=45 Identities=24% Similarity=0.745 Sum_probs=35.7
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+....|.+|.... .....+|. +..|+..|......||.|+..+..
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 3457899999988 44556677 678888899999999999887763
No 178
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.36 E-value=45 Score=21.84 Aligned_cols=9 Identities=44% Similarity=1.556 Sum_probs=6.8
Q ss_pred ccCCCCcCc
Q 026172 175 ARSQSCPFC 183 (242)
Q Consensus 175 ~~~~~CP~C 183 (242)
.+...||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 457888887
No 179
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=13 Score=25.42 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.0
Q ss_pred CCCcCcccccc
Q 026172 178 QSCPFCRDSLR 188 (242)
Q Consensus 178 ~~CP~CR~~l~ 188 (242)
-.||.||.++.
T Consensus 9 LaCP~~kg~L~ 19 (60)
T COG2835 9 LACPVCKGPLV 19 (60)
T ss_pred eeccCcCCcce
Confidence 46888888754
No 180
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.67 E-value=34 Score=25.47 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.6
Q ss_pred cchHHHHHHHhc
Q 026172 164 SMCMRCYRNWRA 175 (242)
Q Consensus 164 ~fC~~Ci~~w~~ 175 (242)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 181
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=26.47 E-value=40 Score=21.27 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=15.2
Q ss_pred ecccccccccceecCCCCcchHH
Q 026172 146 CGICLEICCKIVLPDCNHSMCMR 168 (242)
Q Consensus 146 C~ICl~~~~~~v~~~CgH~fC~~ 168 (242)
|..|......-+.+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 66677555444667799888843
No 182
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=25.97 E-value=37 Score=20.53 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=6.1
Q ss_pred eecccccccc
Q 026172 145 ECGICLEICC 154 (242)
Q Consensus 145 ~C~ICl~~~~ 154 (242)
.||-|...|.
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 5666666555
No 183
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.81 E-value=56 Score=29.11 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=23.0
Q ss_pred Ceeccccccccccee-cCCCC----cchHHHHHHHhc-cCCCCc
Q 026172 144 EECGICLEICCKIVL-PDCNH----SMCMRCYRNWRA-RSQSCP 181 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~-~~CgH----~fC~~Ci~~w~~-~~~~CP 181 (242)
..|.||++.....+- .+=-| .=|..|.++|.. -+..||
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 467777776554321 11122 236899999965 678888
No 184
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=24.33 E-value=25 Score=34.15 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=24.6
Q ss_pred cccCCccCeecccccccccc----eecCCCCcchHHHH
Q 026172 137 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCY 170 (242)
Q Consensus 137 ~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci 170 (242)
|+..++...|-.|.-.|... ..-+||-.||..|-
T Consensus 895 wipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs 932 (990)
T KOG1819|consen 895 WIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCS 932 (990)
T ss_pred cCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccc
Confidence 44455567788888777632 45789999999994
No 185
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=32 Score=32.70 Aligned_cols=45 Identities=22% Similarity=0.643 Sum_probs=30.5
Q ss_pred Ceecccccc---cccceecCCCCcchHHHHHHHhc--------------------------cCCCCcCcccccc
Q 026172 144 EECGICLEI---CCKIVLPDCNHSMCMRCYRNWRA--------------------------RSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~---~~~~v~~~CgH~fC~~Ci~~w~~--------------------------~~~~CP~CR~~l~ 188 (242)
..|+-.... ....+.-.|||.||..|...|.. ..+.||.|..++-
T Consensus 164 ~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~ie 237 (444)
T KOG1815|consen 164 PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIE 237 (444)
T ss_pred CCCCceeeccCCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchh
Confidence 455544442 33446678999999999877653 2357999988775
No 186
>PRK11595 DNA utilization protein GntX; Provisional
Probab=23.41 E-value=64 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=18.4
Q ss_pred eecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172 145 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 145 ~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
.|.+|-..+... .+..|..|...+......||.|-.+
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCc
Confidence 477776554311 1235666665543223456666544
No 187
>PLN02248 cellulose synthase-like protein
Probab=23.39 E-value=70 Score=34.08 Aligned_cols=32 Identities=22% Similarity=0.742 Sum_probs=27.1
Q ss_pred CCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172 160 DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 191 (242)
Q Consensus 160 ~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~ 191 (242)
.|++..|.+|+..-......||-|+.+.+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 57888999999998888899999999886433
No 188
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.06 E-value=45 Score=20.11 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.7
Q ss_pred eecccccccc
Q 026172 145 ECGICLEICC 154 (242)
Q Consensus 145 ~C~ICl~~~~ 154 (242)
+|+-|...+.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 4666665554
No 189
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.46 E-value=9.3 Score=25.27 Aligned_cols=31 Identities=26% Similarity=0.747 Sum_probs=17.7
Q ss_pred eecc--cccccc------c--ceecCCCCcchHHHHHHHhc
Q 026172 145 ECGI--CLEICC------K--IVLPDCNHSMCMRCYRNWRA 175 (242)
Q Consensus 145 ~C~I--Cl~~~~------~--~v~~~CgH~fC~~Ci~~w~~ 175 (242)
.|+- |-..+. . ...+.|++.||..|-..|..
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESCT
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccCC
Confidence 5655 666544 1 22355999999999888743
No 190
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.34 E-value=37 Score=36.56 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=31.1
Q ss_pred cCeecccccccccceecCCCCc-----chHHHHHHHhc---cCCCCcCcccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHS-----MCMRCYRNWRA---RSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~-----fC~~Ci~~w~~---~~~~CP~CR~~l~ 188 (242)
...|+-|-.......++.||+. .|..|-...-. ....||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 4689999887666677888855 38888654221 1347888877665
No 191
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.68 E-value=68 Score=18.78 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=7.6
Q ss_pred cCCCCcCcccc
Q 026172 176 RSQSCPFCRDS 186 (242)
Q Consensus 176 ~~~~CP~CR~~ 186 (242)
....||.|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45688888654
No 192
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=98 Score=34.56 Aligned_cols=32 Identities=28% Similarity=0.764 Sum_probs=23.4
Q ss_pred eecCCCCcchHHHHHHHhc--------------------cCCCCcCcccccc
Q 026172 157 VLPDCNHSMCMRCYRNWRA--------------------RSQSCPFCRDSLR 188 (242)
Q Consensus 157 v~~~CgH~fC~~Ci~~w~~--------------------~~~~CP~CR~~l~ 188 (242)
++-.|||.+|..|++.... ....||.|+.-..
T Consensus 1147 ~~s~c~h~mh~~c~~~~~~a~r~~~n~~~~~l~~~~se~~l~lCp~c~slsn 1198 (1738)
T KOG1140|consen 1147 VLSSCGHHMHYGCFKRYVQAKRFRENARTAPLCQHYSENGLFLCPLCKSLSN 1198 (1738)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHHhhhcCcccccccCCcccCCchHhhhh
Confidence 4446999999999988754 1247999976443
No 193
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=39 Score=33.70 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=33.5
Q ss_pred cCCccCeecccccccccc----eecCCCCcchHHHHHHHhc--------cCCCCcCc
Q 026172 139 DIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRA--------RSQSCPFC 183 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~--------~~~~CP~C 183 (242)
++.+..+|-.|...|... ..-+||-+||..|-..-+. ..+.|-.|
T Consensus 161 dW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 161 DWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred ccccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
Confidence 556668999999888732 4568999999999866543 24678888
No 194
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=20.17 E-value=80 Score=19.07 Aligned_cols=22 Identities=23% Similarity=0.664 Sum_probs=11.7
Q ss_pred chHHHHHHHhc--------cCCCCcCcccc
Q 026172 165 MCMRCYRNWRA--------RSQSCPFCRDS 186 (242)
Q Consensus 165 fC~~Ci~~w~~--------~~~~CP~CR~~ 186 (242)
+|..|.+.+.. ...+|+.|--.
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr 30 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPR 30 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-S
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCC
Confidence 47778777654 35689988443
No 195
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=20.08 E-value=59 Score=28.79 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.0
Q ss_pred Ceecccccccccce-ecCCCCcchHHHHHHHhcc--CCCCcCccc
Q 026172 144 EECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPFCRD 185 (242)
Q Consensus 144 ~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~--~~~CP~CR~ 185 (242)
..|||=...+..|+ ...|||.|=..-+.+.+.. ...||+--.
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 68998766666664 4799999999999998774 567776433
No 196
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.02 E-value=77 Score=25.25 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=11.1
Q ss_pred cCCCCcCccccccc
Q 026172 176 RSQSCPFCRDSLRR 189 (242)
Q Consensus 176 ~~~~CP~CR~~l~~ 189 (242)
+.+.||.|...+..
T Consensus 122 ~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 122 GTFTCPRCGEELEE 135 (147)
T ss_pred CcEECCCCCCEEEE
Confidence 44899999988764
Done!