Query 026172
Match_columns 242
No_of_seqs 295 out of 1918
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 109.2 6.2 49 141-189 51-99 (138)
2 3ng2_A RNF4, snurf, ring finge 99.4 5.7E-14 2E-18 98.0 3.7 55 140-194 7-68 (71)
3 2djb_A Polycomb group ring fin 99.4 1.2E-13 4.1E-18 97.1 4.6 55 139-193 11-66 (72)
4 1t1h_A Gspef-atpub14, armadill 99.4 1.5E-13 5.2E-18 97.8 4.3 52 139-190 4-56 (78)
5 2egp_A Tripartite motif-contai 99.4 1.1E-13 3.8E-18 98.5 3.1 57 139-195 8-71 (79)
6 2ysl_A Tripartite motif-contai 99.4 4.2E-13 1.5E-17 94.1 5.2 51 139-189 16-69 (73)
7 3lrq_A E3 ubiquitin-protein li 99.4 8.8E-14 3E-18 104.1 1.5 50 141-190 20-71 (100)
8 2ea6_A Ring finger protein 4; 99.4 2.2E-13 7.7E-18 94.2 3.2 50 139-188 11-67 (69)
9 2csy_A Zinc finger protein 183 99.4 4.7E-13 1.6E-17 96.0 5.0 50 139-188 11-60 (81)
10 2ecy_A TNF receptor-associated 99.4 4E-13 1.4E-17 92.7 4.4 51 139-189 11-62 (66)
11 2d8t_A Dactylidin, ring finger 99.4 2.9E-13 9.9E-18 94.8 3.7 50 140-189 12-61 (71)
12 2xeu_A Ring finger protein 4; 99.4 1.8E-13 6.2E-18 93.3 2.4 50 142-191 2-58 (64)
13 1iym_A EL5; ring-H2 finger, ub 99.4 3.8E-13 1.3E-17 89.3 3.7 48 141-188 3-54 (55)
14 2ecw_A Tripartite motif-contai 99.4 5.2E-13 1.8E-17 95.9 4.6 53 139-191 15-73 (85)
15 2yur_A Retinoblastoma-binding 99.3 4.2E-13 1.4E-17 94.9 4.0 50 139-188 11-63 (74)
16 2kiz_A E3 ubiquitin-protein li 99.3 8.9E-13 3E-17 91.6 5.3 53 139-191 10-65 (69)
17 2ckl_A Polycomb group ring fin 99.3 3.5E-13 1.2E-17 102.0 3.3 52 139-190 11-63 (108)
18 2ecv_A Tripartite motif-contai 99.3 6.2E-13 2.1E-17 95.4 4.5 57 139-195 15-77 (85)
19 2ct2_A Tripartite motif protei 99.3 9.8E-13 3.3E-17 95.3 5.1 51 139-189 11-68 (88)
20 2l0b_A E3 ubiquitin-protein li 99.3 1.3E-12 4.3E-17 96.1 5.1 49 140-188 37-88 (91)
21 2ect_A Ring finger protein 126 99.3 9E-13 3.1E-17 93.7 4.0 54 139-192 11-67 (78)
22 2ecm_A Ring finger and CHY zin 99.3 7.4E-13 2.5E-17 87.8 3.3 47 142-188 4-54 (55)
23 3ztg_A E3 ubiquitin-protein li 99.3 1.4E-12 4.9E-17 95.6 5.0 50 139-188 9-61 (92)
24 2ecn_A Ring finger protein 141 99.3 6.1E-13 2.1E-17 92.7 2.6 51 139-190 11-61 (70)
25 2kr4_A Ubiquitin conjugation f 99.3 1.3E-12 4.5E-17 95.0 4.3 51 139-189 10-60 (85)
26 1chc_A Equine herpes virus-1 r 99.3 9.7E-13 3.3E-17 91.1 3.3 48 142-189 4-52 (68)
27 2y43_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 98.1 3.3 49 141-189 20-69 (99)
28 3fl2_A E3 ubiquitin-protein li 99.3 6.2E-13 2.1E-17 103.0 2.5 50 140-189 49-99 (124)
29 1x4j_A Ring finger protein 38; 99.3 9.5E-13 3.3E-17 93.1 2.8 50 140-189 20-72 (75)
30 2ep4_A Ring finger protein 24; 99.3 2E-12 6.7E-17 91.0 4.2 52 139-190 11-65 (74)
31 2ysj_A Tripartite motif-contai 99.3 2.5E-12 8.4E-17 87.8 4.4 45 139-183 16-63 (63)
32 2kre_A Ubiquitin conjugation f 99.3 2.6E-12 9E-17 96.4 4.4 51 139-189 25-75 (100)
33 2ecl_A Ring-box protein 2; RNF 99.3 4E-12 1.4E-16 91.6 4.9 49 141-189 13-76 (81)
34 1g25_A CDK-activating kinase a 99.3 2.7E-12 9.3E-17 88.2 3.8 51 142-192 2-58 (65)
35 1wgm_A Ubiquitin conjugation f 99.2 3.8E-12 1.3E-16 95.1 4.2 51 139-189 18-69 (98)
36 1v87_A Deltex protein 2; ring- 99.2 4.2E-12 1.4E-16 96.7 4.4 48 142-189 24-94 (114)
37 2ecj_A Tripartite motif-contai 99.2 7.6E-12 2.6E-16 83.6 5.1 45 139-183 11-58 (58)
38 1jm7_A BRCA1, breast cancer ty 99.2 3.6E-12 1.2E-16 96.5 3.6 53 142-194 20-75 (112)
39 4ap4_A E3 ubiquitin ligase RNF 99.2 4.1E-12 1.4E-16 98.4 3.3 57 141-197 5-68 (133)
40 1z6u_A NP95-like ring finger p 99.2 4.7E-12 1.6E-16 101.6 3.5 51 140-190 75-126 (150)
41 3l11_A E3 ubiquitin-protein li 99.2 2.5E-12 8.6E-17 98.2 1.0 50 140-189 12-62 (115)
42 3hct_A TNF receptor-associated 99.2 8.7E-12 3E-16 95.8 3.6 51 139-189 14-65 (118)
43 1e4u_A Transcriptional repress 99.2 2.5E-11 8.4E-16 87.0 5.3 52 139-190 7-63 (78)
44 1rmd_A RAG1; V(D)J recombinati 99.2 8.9E-12 3E-16 95.3 2.6 50 140-189 20-70 (116)
45 2ckl_B Ubiquitin ligase protei 99.2 9.3E-12 3.2E-16 100.9 2.7 49 140-188 51-101 (165)
46 3dpl_R Ring-box protein 1; ubi 99.1 3.2E-11 1.1E-15 91.4 4.4 47 142-188 36-100 (106)
47 1jm7_B BARD1, BRCA1-associated 99.1 5.6E-12 1.9E-16 96.7 0.1 47 141-189 20-67 (117)
48 1bor_A Transcription factor PM 99.1 1.3E-11 4.4E-16 82.7 1.8 46 141-189 4-49 (56)
49 3knv_A TNF receptor-associated 99.1 1.7E-11 5.7E-16 97.5 2.4 50 139-188 27-77 (141)
50 2vje_A E3 ubiquitin-protein li 99.1 2E-11 6.9E-16 84.0 2.5 49 141-189 6-57 (64)
51 4ap4_A E3 ubiquitin ligase RNF 99.1 2.5E-11 8.6E-16 93.9 2.1 51 141-191 70-127 (133)
52 2c2l_A CHIP, carboxy terminus 99.1 3.3E-11 1.1E-15 104.4 3.0 51 139-189 204-255 (281)
53 4ic3_A E3 ubiquitin-protein li 99.1 1.8E-11 6.1E-16 86.6 0.7 44 142-189 23-67 (74)
54 2f42_A STIP1 homology and U-bo 99.1 2.5E-10 8.4E-15 94.1 7.5 51 139-189 102-153 (179)
55 2vje_B MDM4 protein; proto-onc 99.1 4.3E-11 1.5E-15 82.1 2.5 49 141-189 5-56 (63)
56 2yu4_A E3 SUMO-protein ligase 99.0 4.8E-11 1.6E-15 88.2 2.3 49 140-188 4-62 (94)
57 2y1n_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 105.7 4.7 49 142-190 331-380 (389)
58 3hcs_A TNF receptor-associated 99.0 1.8E-10 6.1E-15 93.7 3.2 51 139-189 14-65 (170)
59 2ecg_A Baculoviral IAP repeat- 98.9 1.6E-10 5.3E-15 81.8 1.2 44 142-189 24-68 (75)
60 4a0k_B E3 ubiquitin-protein li 98.9 1.5E-10 5E-15 89.2 0.2 47 142-188 47-111 (117)
61 2ea5_A Cell growth regulator w 98.8 1.4E-09 4.7E-14 75.7 3.2 45 141-189 13-58 (68)
62 2yho_A E3 ubiquitin-protein li 98.8 6.1E-10 2.1E-14 79.8 1.3 45 142-190 17-62 (79)
63 2d8s_A Cellular modulator of i 98.8 1.6E-09 5.5E-14 77.8 3.4 49 140-188 12-69 (80)
64 3htk_C E3 SUMO-protein ligase 98.8 1.4E-09 4.9E-14 94.1 3.2 54 139-192 177-235 (267)
65 2ct0_A Non-SMC element 1 homol 98.8 8.8E-09 3E-13 72.9 5.1 49 141-189 13-64 (74)
66 3t6p_A Baculoviral IAP repeat- 98.6 2.9E-09 9.8E-14 96.2 -0.1 46 141-190 293-339 (345)
67 2bay_A PRE-mRNA splicing facto 98.6 8.1E-09 2.8E-13 70.3 2.2 47 144-190 4-51 (61)
68 1wim_A KIAA0161 protein; ring 98.6 1.9E-08 6.5E-13 73.9 2.7 45 142-186 4-61 (94)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.2E-07 1.5E-11 61.5 4.3 48 141-188 4-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.3 8.2E-08 2.8E-12 86.0 0.9 48 141-188 306-372 (381)
71 3vk6_A E3 ubiquitin-protein li 98.2 9.3E-07 3.2E-11 65.4 3.4 48 145-192 3-52 (101)
72 3nw0_A Non-structural maintena 97.4 0.00015 5.1E-09 62.1 4.5 49 142-190 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0031 1.1E-07 46.1 3.1 33 142-174 2-37 (101)
74 3m62_A Ubiquitin conjugation f 92.6 0.095 3.3E-06 52.7 4.6 52 139-190 887-939 (968)
75 2ko5_A Ring finger protein Z; 91.3 0.11 3.7E-06 37.8 2.4 45 142-188 27-72 (99)
76 2lri_C Autoimmune regulator; Z 89.3 0.34 1.1E-05 32.8 3.5 46 142-187 11-60 (66)
77 1weo_A Cellulose synthase, cat 85.8 1.2 3.9E-05 32.0 4.6 49 142-190 15-71 (93)
78 2cs3_A Protein C14ORF4, MY039 85.4 0.64 2.2E-05 32.7 3.0 35 141-175 13-51 (93)
79 3u5n_A E3 ubiquitin-protein li 82.0 0.53 1.8E-05 38.7 1.7 47 141-187 5-55 (207)
80 2l5u_A Chromodomain-helicase-D 81.2 1.1 3.9E-05 29.4 2.9 47 139-185 7-57 (61)
81 1wil_A KIAA1045 protein; ring 80.3 2.1 7.1E-05 30.4 4.0 44 140-183 12-73 (89)
82 1z2q_A LM5-1; membrane protein 78.0 1.5 5.1E-05 30.8 2.8 38 135-172 13-54 (84)
83 3o36_A Transcription intermedi 76.9 1.1 3.8E-05 36.0 2.1 46 142-187 3-52 (184)
84 1z60_A TFIIH basal transcripti 76.6 2.4 8.2E-05 28.0 3.3 40 144-183 16-58 (59)
85 3ql9_A Transcriptional regulat 75.9 5.3 0.00018 30.5 5.6 46 140-185 54-110 (129)
86 2lbm_A Transcriptional regulat 75.9 5.6 0.00019 30.9 5.8 46 140-185 60-116 (142)
87 3t7l_A Zinc finger FYVE domain 75.1 1.8 6E-05 30.9 2.6 37 137-173 14-54 (90)
88 1mm2_A MI2-beta; PHD, zinc fin 74.9 0.74 2.5E-05 30.4 0.5 46 141-186 7-56 (61)
89 2yql_A PHD finger protein 21A; 70.1 0.53 1.8E-05 30.5 -1.2 46 140-185 6-55 (56)
90 1joc_A EEA1, early endosomal a 69.8 1.9 6.5E-05 32.6 1.8 36 137-172 63-102 (125)
91 2ro1_A Transcription intermedi 69.5 2.3 7.8E-05 34.5 2.3 44 143-186 2-49 (189)
92 1x4u_A Zinc finger, FYVE domai 69.4 2.3 7.9E-05 29.7 2.0 37 135-171 6-46 (84)
93 2yw8_A RUN and FYVE domain-con 69.2 2.1 7.1E-05 29.9 1.7 36 137-172 13-52 (82)
94 3i2d_A E3 SUMO-protein ligase 66.9 5 0.00017 36.1 4.1 47 142-188 248-299 (371)
95 2l43_A N-teminal domain from h 66.9 2 7E-05 30.5 1.3 49 140-188 22-77 (88)
96 2jmo_A Parkin; IBR, E3 ligase, 66.0 0.57 1.9E-05 32.7 -1.8 20 160-181 55-74 (80)
97 4fo9_A E3 SUMO-protein ligase 65.3 5.7 0.00019 35.6 4.2 47 142-188 214-265 (360)
98 2pv0_B DNA (cytosine-5)-methyl 65.0 11 0.00038 34.0 6.0 61 119-185 75-147 (386)
99 2zet_C Melanophilin; complex, 64.1 1.5 5.2E-05 34.5 0.2 44 142-186 67-117 (153)
100 2k16_A Transcription initiatio 61.4 2.4 8.3E-05 28.8 0.8 48 141-188 16-70 (75)
101 3a1b_A DNA (cytosine-5)-methyl 60.3 17 0.00056 28.7 5.6 46 140-185 76-133 (159)
102 1f62_A Transcription factor WS 60.0 4.7 0.00016 25.1 2.0 41 145-185 2-49 (51)
103 1fp0_A KAP-1 corepressor; PHD 58.9 3.6 0.00012 29.3 1.4 46 141-186 23-72 (88)
104 1vfy_A Phosphatidylinositol-3- 57.7 5.3 0.00018 27.1 2.0 29 143-171 11-43 (73)
105 3zyq_A Hepatocyte growth facto 56.8 4.2 0.00014 33.8 1.7 32 141-172 162-197 (226)
106 3mpx_A FYVE, rhogef and PH dom 56.4 2.3 8E-05 38.2 0.0 37 138-174 370-410 (434)
107 1dvp_A HRS, hepatocyte growth 55.6 4.2 0.00014 33.5 1.5 32 141-172 159-194 (220)
108 2puy_A PHD finger protein 21A; 55.1 1.6 5.6E-05 28.4 -0.9 46 142-187 4-53 (60)
109 1xwh_A Autoimmune regulator; P 54.4 1.8 6.2E-05 28.9 -0.8 46 141-186 6-55 (66)
110 2gmg_A Hypothetical protein PF 54.3 3.5 0.00012 30.4 0.7 27 155-186 67-93 (105)
111 1y02_A CARP2, FYVE-ring finger 53.6 1.3 4.6E-05 33.4 -1.8 45 141-185 17-65 (120)
112 4g9i_A Hydrogenase maturation 52.3 6.2 0.00021 38.9 2.3 47 142-188 105-189 (772)
113 1wfk_A Zinc finger, FYVE domai 51.5 5.9 0.0002 28.0 1.5 32 141-172 7-42 (88)
114 2ysm_A Myeloid/lymphoid or mix 51.5 4.2 0.00014 29.7 0.7 44 141-184 5-55 (111)
115 2d8v_A Zinc finger FYVE domain 50.9 6.7 0.00023 26.4 1.6 33 141-174 6-39 (67)
116 3ttc_A HYPF, transcriptional r 50.7 6.1 0.00021 38.2 1.9 22 166-187 70-99 (657)
117 2fiy_A Protein FDHE homolog; F 48.8 1.9 6.5E-05 37.8 -1.8 46 141-186 180-231 (309)
118 1wd2_A Ariadne-1 protein homol 48.6 1.9 6.6E-05 28.4 -1.4 33 144-176 7-47 (60)
119 1zbd_B Rabphilin-3A; G protein 48.4 5.5 0.00019 30.5 1.0 30 141-170 53-87 (134)
120 3vth_A Hydrogenase maturation 47.1 7.3 0.00025 38.3 1.8 47 142-188 110-194 (761)
121 2e6r_A Jumonji/ARID domain-con 42.2 3.4 0.00012 29.5 -1.0 48 139-186 12-66 (92)
122 1wen_A Inhibitor of growth fam 40.7 16 0.00054 24.6 2.3 46 141-187 14-66 (71)
123 3fyb_A Protein of unknown func 40.3 10 0.00035 27.6 1.2 12 164-175 41-52 (104)
124 2ku3_A Bromodomain-containing 40.2 8.3 0.00029 26.1 0.7 47 140-186 13-66 (71)
125 2o35_A Hypothetical protein DU 40.0 10 0.00035 27.6 1.2 12 164-175 42-53 (105)
126 1m3v_A FLIN4, fusion of the LI 38.6 17 0.00057 26.7 2.3 45 144-188 33-80 (122)
127 2lv9_A Histone-lysine N-methyl 38.1 6.9 0.00024 28.1 0.0 43 142-185 27-75 (98)
128 2ct7_A Ring finger protein 31; 37.1 2.5 8.7E-05 29.6 -2.4 17 157-173 45-61 (86)
129 1x62_A C-terminal LIM domain p 36.7 21 0.00071 23.8 2.4 40 141-188 13-52 (79)
130 1weu_A Inhibitor of growth fam 35.9 18 0.00062 25.7 2.0 46 141-187 34-86 (91)
131 1nyp_A Pinch protein; LIM doma 35.7 19 0.00065 23.0 2.0 37 144-188 6-42 (66)
132 1we9_A PHD finger family prote 34.7 6.5 0.00022 25.6 -0.5 46 141-186 4-58 (64)
133 3v43_A Histone acetyltransfera 34.7 52 0.0018 23.8 4.5 43 142-184 4-62 (112)
134 1wig_A KIAA1808 protein; LIM d 34.6 20 0.00068 23.7 2.0 37 144-188 6-42 (73)
135 1x64_A Alpha-actinin-2 associa 33.5 36 0.0012 23.2 3.3 40 141-188 23-62 (89)
136 1wyh_A SLIM 2, skeletal muscle 33.1 29 0.00099 22.4 2.6 37 144-188 6-44 (72)
137 2dar_A PDZ and LIM domain prot 32.5 15 0.00051 25.3 1.1 39 142-188 24-62 (90)
138 2cor_A Pinch protein; LIM doma 32.4 28 0.00095 23.3 2.5 39 142-188 14-52 (79)
139 1wev_A Riken cDNA 1110020M19; 31.9 3.1 0.00011 29.4 -2.7 47 142-188 15-74 (88)
140 1x6a_A LIMK-2, LIM domain kina 31.6 22 0.00076 23.7 1.9 37 144-188 16-52 (81)
141 2d8z_A Four and A half LIM dom 30.5 23 0.00079 22.8 1.8 37 144-188 6-42 (70)
142 2d8x_A Protein pinch; LIM doma 30.1 16 0.00056 23.7 0.9 37 144-188 6-42 (70)
143 1x4l_A Skeletal muscle LIM-pro 29.0 26 0.00089 22.7 1.8 37 144-188 6-46 (72)
144 2xjy_A Rhombotin-2; oncoprotei 28.9 26 0.0009 25.6 2.0 47 142-188 28-77 (131)
145 3mjh_B Early endosome antigen 27.5 15 0.00052 21.3 0.3 12 144-155 6-17 (34)
146 1rut_X Flinc4, fusion protein 27.3 19 0.00064 28.5 1.0 47 142-188 31-80 (188)
147 3ask_A E3 ubiquitin-protein li 27.3 11 0.00038 31.5 -0.5 41 145-185 176-224 (226)
148 3c6w_A P28ING5, inhibitor of g 27.0 11 0.00039 24.3 -0.3 43 142-185 8-57 (59)
149 3asl_A E3 ubiquitin-protein li 26.9 14 0.00049 24.8 0.1 41 145-185 20-68 (70)
150 3shb_A E3 ubiquitin-protein li 26.7 11 0.00037 26.0 -0.5 41 145-185 28-76 (77)
151 1x63_A Skeletal muscle LIM-pro 26.1 33 0.0011 22.8 2.0 37 144-188 16-54 (82)
152 3c5k_A HD6, histone deacetylas 26.0 27 0.00091 25.6 1.5 25 143-167 24-48 (109)
153 2yt5_A Metal-response element- 25.7 20 0.00068 23.3 0.7 46 141-186 4-61 (66)
154 2dlo_A Thyroid receptor-intera 25.5 22 0.00074 23.8 0.9 38 143-188 15-52 (81)
155 1x68_A FHL5 protein; four-and- 24.5 27 0.00092 23.0 1.2 37 144-188 6-46 (76)
156 1v6g_A Actin binding LIM prote 24.4 23 0.00078 23.7 0.8 37 144-188 16-52 (81)
157 2vnf_A ING 4, P29ING4, inhibit 24.2 13 0.00046 24.0 -0.4 43 142-185 9-58 (60)
158 2cur_A Skeletal muscle LIM-pro 24.0 23 0.00077 22.8 0.7 37 144-188 6-42 (69)
159 4gne_A Histone-lysine N-methyl 23.9 45 0.0015 24.3 2.4 46 140-188 12-64 (107)
160 2e6s_A E3 ubiquitin-protein li 23.5 13 0.00043 25.6 -0.7 41 145-185 28-76 (77)
161 2cu8_A Cysteine-rich protein 2 23.4 25 0.00087 23.1 0.9 38 143-188 9-47 (76)
162 2cuq_A Four and A half LIM dom 23.3 36 0.0012 22.5 1.7 37 144-188 16-52 (80)
163 2kgg_A Histone demethylase jar 23.0 36 0.0012 21.1 1.5 40 145-184 4-52 (52)
164 2csz_A Synaptotagmin-like prot 22.7 40 0.0014 23.2 1.7 31 140-170 22-57 (76)
165 2xqn_T Testin, TESS; metal-bin 22.4 59 0.002 23.5 2.9 45 142-188 29-74 (126)
166 2jrp_A Putative cytoplasmic pr 21.7 5.1 0.00017 28.1 -3.0 40 144-188 3-42 (81)
167 2lcq_A Putative toxin VAPC6; P 21.5 24 0.0008 27.4 0.5 27 158-190 135-161 (165)
168 2jvx_A NF-kappa-B essential mo 20.7 24 0.00082 19.5 0.3 12 177-188 3-14 (28)
169 2ri7_A Nucleosome-remodeling f 20.7 17 0.0006 28.3 -0.5 45 141-186 6-59 (174)
170 2kwj_A Zinc finger protein DPF 20.6 37 0.0013 24.7 1.4 39 145-183 3-58 (114)
171 1x4k_A Skeletal muscle LIM-pro 20.4 33 0.0011 22.1 1.0 37 144-188 6-44 (72)
172 2jne_A Hypothetical protein YF 20.4 5.2 0.00018 29.1 -3.3 42 144-190 33-74 (101)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=1.2e-13 Score=109.16 Aligned_cols=49 Identities=37% Similarity=0.879 Sum_probs=45.6
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+++..|+||++.+.+|+.++|||.||..|+..|+..+.+||+||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4567899999999999999999999999999999999999999999864
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=5.7e-14 Score=97.96 Aligned_cols=55 Identities=25% Similarity=0.657 Sum_probs=47.8
Q ss_pred CCccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCC
Q 026172 140 IEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD 194 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~ 194 (242)
.+++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++...+...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 35678999999999877 78999999999999999998899999999987554443
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=97.07 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=48.2
Q ss_pred cCCccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccccCC
Q 026172 139 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG 193 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~ 193 (242)
..+++..|+||++.+.+++.+ +|||.||..|+.+|+.....||+||.++...++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 456778999999999999875 9999999999999999899999999998754443
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.5e-13 Score=97.76 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=46.9
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~~ 190 (242)
...++..|+||++.+.+|+.++|||+||..|+.+|+.. ..+||.||.++...
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45678999999999999999999999999999999986 88999999988643
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=98.48 Aligned_cols=57 Identities=30% Similarity=0.592 Sum_probs=48.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-------CCCCcCcccccccccCCCc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVNSGDL 195 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-------~~~CP~CR~~l~~~~~~~~ 195 (242)
..+++..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||.++.......+
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 45678999999999999999999999999999999875 6799999999875444433
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=94.07 Aligned_cols=51 Identities=35% Similarity=0.834 Sum_probs=45.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~CR~~l~~ 189 (242)
...++..|+||++.+.+++.++|||.||..|+..|+. ....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567789999999999999999999999999999996 56799999998864
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.37 E-value=8.8e-14 Score=104.15 Aligned_cols=50 Identities=32% Similarity=0.770 Sum_probs=45.4
Q ss_pred CccCeeccccccccccee-cCCCCcchHHHHHHHhccC-CCCcCcccccccc
Q 026172 141 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 190 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~~ 190 (242)
.++..|+||++.+.+|+. ++|||.||..|+.+|+... ..||.||.++...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 466899999999999998 9999999999999999976 7999999998643
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=94.19 Aligned_cols=50 Identities=28% Similarity=0.752 Sum_probs=45.1
Q ss_pred cCCccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
...++..|+||++.+.++ +.++|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 445778999999999876 78899999999999999998999999999876
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=96.03 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=45.9
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+.+....|+||++.+.+++.++|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999999999999999999999999998999999999885
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4e-13 Score=92.68 Aligned_cols=51 Identities=24% Similarity=0.663 Sum_probs=45.6
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~ 189 (242)
...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4457789999999999999999999999999999994 67899999998864
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.9e-13 Score=94.82 Aligned_cols=50 Identities=28% Similarity=0.692 Sum_probs=45.9
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
..++..|+||++.+.+++.++|||.||..|+.+|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34668999999999999999999999999999999988999999999874
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=93.29 Aligned_cols=50 Identities=28% Similarity=0.755 Sum_probs=44.4
Q ss_pred ccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172 142 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 191 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~ 191 (242)
++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 457899999999876 77899999999999999999999999999987543
No 13
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=3.8e-13 Score=89.27 Aligned_cols=48 Identities=25% Similarity=0.681 Sum_probs=41.9
Q ss_pred CccCeeccccccccc---ceecC-CCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 141 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~---~v~~~-CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+++.+|+||++.+.. ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 466899999999886 55555 9999999999999999999999998764
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=5.2e-13 Score=95.85 Aligned_cols=53 Identities=38% Similarity=0.668 Sum_probs=47.0
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc------CCCCcCccccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVN 191 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~ 191 (242)
...++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 45677899999999999999999999999999999886 789999999987543
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=4.2e-13 Score=94.89 Aligned_cols=50 Identities=32% Similarity=0.607 Sum_probs=44.6
Q ss_pred cCCccCeecccccccccceecC-CCCcchHHHHHHHhccC--CCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~~~--~~CP~CR~~l~ 188 (242)
...++..|+||++.+.+++.++ |||.||..|+..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4567789999999999999998 99999999999999854 79999999754
No 16
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=8.9e-13 Score=91.57 Aligned_cols=53 Identities=28% Similarity=0.652 Sum_probs=44.8
Q ss_pred cCCccCeecccccccc---cceecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172 139 DIEREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 191 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~---~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~ 191 (242)
....+..|+||++.+. .++.++|||.||..|+.+|+..+.+||+||.++....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3456688999999885 4567899999999999999998899999999987543
No 17
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.34 E-value=3.5e-13 Score=101.96 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=47.1
Q ss_pred cCCccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
...++..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 456778999999999999886 9999999999999999899999999998753
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.2e-13 Score=95.43 Aligned_cols=57 Identities=33% Similarity=0.688 Sum_probs=48.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc------CCCCcCcccccccccCCCc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDL 195 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~------~~~CP~CR~~l~~~~~~~~ 195 (242)
...++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++.......+
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 45677899999999999999999999999999999876 8899999999875444333
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.8e-13 Score=95.31 Aligned_cols=51 Identities=33% Similarity=0.737 Sum_probs=45.6
Q ss_pred cCCccCeeccccccccc----ceecCCCCcchHHHHHHHhccC---CCCcCccccccc
Q 026172 139 DIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~---~~CP~CR~~l~~ 189 (242)
...++.+|+||++.+.+ ++.++|||.||..|+.+|+... ..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 55677899999999998 8889999999999999999864 899999998764
No 20
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=96.15 Aligned_cols=49 Identities=29% Similarity=0.621 Sum_probs=43.7
Q ss_pred CCccCeeccccccccc---ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 140 IEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.+++..|+||++.+.. ++.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4567899999999886 666889999999999999999999999999875
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=9e-13 Score=93.74 Aligned_cols=54 Identities=31% Similarity=0.598 Sum_probs=45.7
Q ss_pred cCCccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCcccccccccC
Q 026172 139 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~ 192 (242)
...++.+|+||++.+..+ ..++|||.||..|+.+|+....+||+||.++...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 445678999999998754 456899999999999999989999999999875433
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=7.4e-13 Score=87.75 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=42.1
Q ss_pred ccCeeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
++..|+||++.+.+ ++.++|||.||..|+.+|+....+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999999865 678899999999999999998899999998764
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=95.55 Aligned_cols=50 Identities=30% Similarity=0.589 Sum_probs=44.6
Q ss_pred cCCccCeecccccccccceecC-CCCcchHHHHHHHhc--cCCCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
...++..|+||++.+.+|+.++ |||+||..|+..|+. ....||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5567899999999999999999 999999999999986 3479999999873
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.1e-13 Score=92.68 Aligned_cols=51 Identities=33% Similarity=0.920 Sum_probs=45.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
...++..|+||++.+.+ +.++|||.||..|+.+|+.+...||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 34567899999999999 8889999999999999999999999999998743
No 25
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.30 E-value=1.3e-12 Score=95.05 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=47.1
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
...+++.|+||++.+.+||.++|||+||..||..|+....+||+||.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456789999999999999999999999999999999988999999998874
No 26
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=9.7e-13 Score=91.05 Aligned_cols=48 Identities=29% Similarity=0.783 Sum_probs=43.7
Q ss_pred ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 567899999999985 788999999999999999989999999999874
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=8.8e-13 Score=98.14 Aligned_cols=49 Identities=27% Similarity=0.707 Sum_probs=44.9
Q ss_pred CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.++..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4568999999999999876 899999999999999999999999999874
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.30 E-value=6.2e-13 Score=103.00 Aligned_cols=50 Identities=30% Similarity=0.658 Sum_probs=44.6
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~ 189 (242)
.+++..|+||++.+.+|+.++|||.||..|+..|+. +...||.||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346689999999999999999999999999999997 45599999999864
No 29
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.5e-13 Score=93.06 Aligned_cols=50 Identities=22% Similarity=0.595 Sum_probs=43.8
Q ss_pred CCccCeecccccccccc---eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
..++..|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34668999999998865 667899999999999999989999999998763
No 30
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=91.04 Aligned_cols=52 Identities=23% Similarity=0.637 Sum_probs=44.0
Q ss_pred cCCccCeecccccccccce---ecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v---~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
+...+..|+||++.+..+. .++|||.||..|+.+|+....+||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4456789999999988653 348999999999999999888999999988643
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=87.81 Aligned_cols=45 Identities=36% Similarity=0.841 Sum_probs=40.9
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhc---cCCCCcCc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC 183 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~---~~~~CP~C 183 (242)
..+++..|+||++.+.+++.++|||.||..|+.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567889999999999999999999999999999997 56799998
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=2.6e-12 Score=96.37 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=47.1
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
...++..|+||++.+.+||.++|||+||..||.+|+....+||+||.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456789999999999999999999999999999999988999999999874
No 33
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=91.57 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=41.7
Q ss_pred CccCeeccccccccc--------------c-eecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCK--------------I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~--------------~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.++..|+||++.+.+ + ++++|||.||..||.+|+..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356789999999865 2 445799999999999999999999999998764
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.7e-12 Score=88.19 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=42.4
Q ss_pred ccCeeccccc-ccccc----eecCCCCcchHHHHHHHhc-cCCCCcCcccccccccC
Q 026172 142 REEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 142 ~~~~C~ICl~-~~~~~----v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~~~ 192 (242)
++..|+||++ .+.++ +.++|||.||..|+.+|+. ....||.||.++...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 4578999999 78777 4689999999999999965 56789999999875433
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.24 E-value=3.8e-12 Score=95.15 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=47.0
Q ss_pred cCCccCeecccccccccceecCCC-CcchHHHHHHHhccCCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
...+++.|+||++.+.+||.++|| |+||..||.+|+....+||+||.++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 446789999999999999999999 999999999999988999999999874
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.24 E-value=4.2e-12 Score=96.67 Aligned_cols=48 Identities=29% Similarity=0.626 Sum_probs=41.0
Q ss_pred ccCeecccccccccce------------------ecCCCCcchHHHHHHHh-----ccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v------------------~~~CgH~fC~~Ci~~w~-----~~~~~CP~CR~~l~~ 189 (242)
.+..|+||++.+..+. .++|||.||..||..|+ ....+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4569999999986543 68999999999999999 457899999998863
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.6e-12 Score=83.60 Aligned_cols=45 Identities=33% Similarity=0.959 Sum_probs=40.2
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHh---ccCCCCcCc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR---ARSQSCPFC 183 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~---~~~~~CP~C 183 (242)
...++..|+||++.+.+++.++|||.||..|+.+|+ .....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 445778999999999999999999999999999994 467899998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.6e-12 Score=96.50 Aligned_cols=53 Identities=26% Similarity=0.693 Sum_probs=45.4
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhccC---CCCcCcccccccccCCC
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNSGD 194 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~---~~CP~CR~~l~~~~~~~ 194 (242)
+...|+||++.+.+++.++|||.||..|+..|+... ..||.||.++.......
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 457899999999999999999999999999999854 49999999987544333
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4.1e-12 Score=98.42 Aligned_cols=57 Identities=26% Similarity=0.712 Sum_probs=48.9
Q ss_pred CccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCcccccccccCCCccc
Q 026172 141 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 197 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~~ 197 (242)
.++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++.......++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccccc
Confidence 3668999999999987 88999999999999999999999999999987555444433
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.21 E-value=4.7e-12 Score=101.64 Aligned_cols=51 Identities=29% Similarity=0.637 Sum_probs=45.3
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCcccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV 190 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~~ 190 (242)
..++..|+||++.+.+|+.++|||.||..|+..|+... ..||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 44678999999999999999999999999999999854 5999999998743
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.19 E-value=2.5e-12 Score=98.22 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=45.1
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~ 189 (242)
..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999999999999999999999999999975 7899999999863
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=8.7e-12 Score=95.82 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=45.6
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~~ 189 (242)
..+++..|+||++.+.+++.++|||.||..|+.+|+..+ .+||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 556778999999999999999999999999999999854 499999998863
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.17 E-value=2.5e-11 Score=87.01 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=42.3
Q ss_pred cCCccCeecccccccc--cceecC--CCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~--~~v~~~--CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~ 190 (242)
..+++..|+||++.+. ++...+ |||.||..|+.+++. ....||.||.++...
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4567889999999885 344444 999999999999874 578999999998743
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.16 E-value=8.9e-12 Score=95.28 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=45.2
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 189 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~ 189 (242)
..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456899999999999999999999999999999985 7899999999874
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=9.3e-12 Score=100.95 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=44.1
Q ss_pred CCccCeecccccccccceec-CCCCcchHHHHHHHhcc-CCCCcCcccccc
Q 026172 140 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~ 188 (242)
..++..|+||++.+.+++.+ +|||.||..|+..|+.. ...||.||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34667999999999999876 99999999999999986 889999999985
No 46
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.13 E-value=3.2e-11 Score=91.35 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=41.5
Q ss_pred ccCeecccccccccc------------------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~------------------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
++..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 567899999998754 44799999999999999999999999999864
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=5.6e-12 Score=96.73 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=42.9
Q ss_pred CccCeecccccccccceec-CCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.++..|+||++.+.+|+.+ +|||+||..|+..|+. ..||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 4568999999999999988 9999999999999987 899999999864
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=1.3e-11 Score=82.65 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=41.0
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
.++..|+||++.+.+++.++|||+||..|+..| ...||+||.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 466889999999999999999999999999774 6799999998763
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=1.7e-11 Score=97.47 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=45.1
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhccC-CCCcCcccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR 188 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~-~~CP~CR~~l~ 188 (242)
..+++..|+||++.+.+|+.++|||.||..|+.+|+... ..||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 556789999999999999999999999999999999854 59999999864
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=2e-11 Score=84.03 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=44.1
Q ss_pred CccCeecccccccccceec--CCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~--~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+++.+|.||++...+++.+ +|||. ||..|+..|...+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3567899999999999876 99999 8999999999988999999999864
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=2.5e-11 Score=93.91 Aligned_cols=51 Identities=27% Similarity=0.751 Sum_probs=45.5
Q ss_pred CccCeecccccccccc-------eecCCCCcchHHHHHHHhccCCCCcCccccccccc
Q 026172 141 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 191 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~-------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~~ 191 (242)
++...|+||++.+.++ +.++|||.||..|+.+|+..+++||+||.++...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4668899999999876 78899999999999999999999999999987543
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=3.3e-11 Score=104.40 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=45.3
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~ 189 (242)
+..++..|+||++.+.+||.++|||+||..||..|+.. +.+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44577999999999999999999999999999999984 4569999999864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=1.8e-11 Score=86.62 Aligned_cols=44 Identities=30% Similarity=0.745 Sum_probs=40.7
Q ss_pred ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 55789999999999999999999 999999998 899999999874
No 54
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.07 E-value=2.5e-10 Score=94.13 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=45.8
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~ 189 (242)
...+++.|+||++.+.+||.++|||+||..||..|+.. +.+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45678999999999999999999999999999999975 4579999998874
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=4.3e-11 Score=82.10 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=43.3
Q ss_pred CccCeecccccccccceec--CCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~--~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+.+..|.||++...+++++ ||||. ||..|+.+|...+..||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3557899999999988766 99998 9999999999888999999999864
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.8e-11 Score=88.24 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=42.5
Q ss_pred CCccCeecccccccccceecC-CCCcchHHHHHHHhcc------CCCCcC--cccc-cc
Q 026172 140 IEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR------SQSCPF--CRDS-LR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~-CgH~fC~~Ci~~w~~~------~~~CP~--CR~~-l~ 188 (242)
..+++.|+||++.+.+||.++ |||+||..||..|+.. ..+||+ |+.. +.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 356789999999999999985 9999999999999974 369999 9866 55
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=1.5e-10 Score=105.73 Aligned_cols=49 Identities=33% Similarity=0.845 Sum_probs=44.8
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc-cCCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~ 190 (242)
....|+||++.+.+++.++|||.||..|+..|.. ...+||+||.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3478999999999999999999999999999998 789999999998754
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.98 E-value=1.8e-10 Score=93.69 Aligned_cols=51 Identities=27% Similarity=0.553 Sum_probs=45.7
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhcc-CCCCcCccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR 189 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~-~~~CP~CR~~l~~ 189 (242)
..+++..|+||++.+.+|+.++|||+||..|+.+|+.. ..+||.||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 55678999999999999999999999999999999874 4599999998864
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.6e-10 Score=81.80 Aligned_cols=44 Identities=30% Similarity=0.757 Sum_probs=39.1
Q ss_pred ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
++..|+||++.+.+++.++|||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 44689999999999999999999 99999965 3899999999864
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.91 E-value=1.5e-10 Score=89.18 Aligned_cols=47 Identities=23% Similarity=0.613 Sum_probs=1.1
Q ss_pred ccCeecccccccccc------------------eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~------------------v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.+..|+||++.+.++ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999998752 23589999999999999999999999999864
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=75.72 Aligned_cols=45 Identities=31% Similarity=0.804 Sum_probs=40.4
Q ss_pred CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~ 189 (242)
+++..|.||++...+++++||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 456899999999999999999999 99999984 4899999999874
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.83 E-value=6.1e-10 Score=79.79 Aligned_cols=45 Identities=31% Similarity=0.696 Sum_probs=40.2
Q ss_pred ccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999999999999999999 999999887 4999999998753
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=77.84 Aligned_cols=49 Identities=20% Similarity=0.554 Sum_probs=40.8
Q ss_pred CCccCeecccccccc--cceecCCC-----CcchHHHHHHHhccC--CCCcCcccccc
Q 026172 140 IEREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~--~~v~~~Cg-----H~fC~~Ci~~w~~~~--~~CP~CR~~l~ 188 (242)
..++..|.||++.+. +++.++|+ |.||..|+.+|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 346679999998875 45668896 999999999999854 69999999876
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.4e-09 Score=94.14 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=45.4
Q ss_pred cCCccCeeccccccccccee-cCCCCcchHHHHHHHhcc--CCCCcC--cccccccccC
Q 026172 139 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPF--CRDSLRRVNS 192 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~-~~CgH~fC~~Ci~~w~~~--~~~CP~--CR~~l~~~~~ 192 (242)
....+..||||++.+.+||. ..|||+||..||.+|+.. ...||. ||..+...+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 34567899999999999997 499999999999999874 468999 9998764433
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=8.8e-09 Score=72.87 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=41.2
Q ss_pred CccCeecccccccccce-ecCCCCcchHHHHHHHhccC--CCCcCccccccc
Q 026172 141 EREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR 189 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~~--~~CP~CR~~l~~ 189 (242)
+...+|+||.+.+.... ...|+|.||..|+.+|+..+ .+||+||.+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45578999999988543 45899999999999999866 899999988763
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=2.9e-09 Score=96.23 Aligned_cols=46 Identities=26% Similarity=0.828 Sum_probs=41.5
Q ss_pred CccCeecccccccccceecCCCCc-chHHHHHHHhccCCCCcCcccccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~-fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
+++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++...
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 456899999999999999999999 999999988 7999999998743
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=8.1e-09 Score=70.33 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred Ceecccccccccceec-CCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 144 EECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~-~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
..|+||++.+.+|+.. +|||+|+..||.+|+..+.+||+.+.++...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 6799999999999998 9999999999999998778899999998744
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.9e-08 Score=73.87 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=37.2
Q ss_pred ccCeeccccccccccee---cCCCCcchHHHHHHHhcc--------CCCCcC--cccc
Q 026172 142 REEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR--------SQSCPF--CRDS 186 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~---~~CgH~fC~~Ci~~w~~~--------~~~CP~--CR~~ 186 (242)
+..+|+||++.+..+.. .+|||.||..|+.+++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 56789999999887644 379999999999998751 358999 9987
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.34 E-value=4.2e-07 Score=61.52 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=39.3
Q ss_pred CccCeecccccccccceecCCC--C---cchHHHHHHHhc--cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~Cg--H---~fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
+++..|.||++...++...||. | .||..|+.+|+. ++.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4667899999886666667765 4 799999999987 4789999998764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.34 E-value=8.2e-08 Score=85.99 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=39.0
Q ss_pred CccCeeccccccccc-ce-------ecCCCCcchHHHHHHHhccC-----------CCCcCcccccc
Q 026172 141 EREEECGICLEICCK-IV-------LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~-~v-------~~~CgH~fC~~Ci~~w~~~~-----------~~CP~CR~~l~ 188 (242)
+...+|+||++.+.+ .. .+.|||.||..|+.+|+... .+||.||++++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456799999998775 21 24899999999999999732 57999999987
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=9.3e-07 Score=65.43 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=39.7
Q ss_pred eeccccccccc-ceecCCCCcchHHHHHHHhc-cCCCCcCcccccccccC
Q 026172 145 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNS 192 (242)
Q Consensus 145 ~C~ICl~~~~~-~v~~~CgH~fC~~Ci~~w~~-~~~~CP~CR~~l~~~~~ 192 (242)
.|++|--.+.. ....||+|+||.+|+..|.. +.++||.|+.++.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 58888888774 45678999999999999975 67999999999985543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.35 E-value=0.00015 Score=62.05 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=40.1
Q ss_pred ccCeecccccccccce-ecCCCCcchHHHHHHHhcc--CCCCcCcccccccc
Q 026172 142 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v-~~~CgH~fC~~Ci~~w~~~--~~~CP~CR~~l~~~ 190 (242)
.-..|.||.+...... ..+|+|.||..|+..|+.. +..||.|+.+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3578999999988654 4679999999999999874 45999998876543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.16 E-value=0.0031 Score=46.05 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.3
Q ss_pred ccCeecccccc-ccccee--cCCCCcchHHHHHHHh
Q 026172 142 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRNWR 174 (242)
Q Consensus 142 ~~~~C~ICl~~-~~~~v~--~~CgH~fC~~Ci~~w~ 174 (242)
++..|+||.+. +.+++. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 45789999975 566766 8999999999999843
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.63 E-value=0.095 Score=52.70 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=46.6
Q ss_pred cCCccCeecccccccccceecCCC-CcchHHHHHHHhccCCCCcCcccccccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~Cg-H~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
+..++..|||-.+.+.+||.++.| ++|=..+|.+|+..+.+||+=|.+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 456789999999999999999997 6999999999999889999999988743
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.34 E-value=0.11 Score=37.79 Aligned_cols=45 Identities=29% Similarity=0.629 Sum_probs=37.0
Q ss_pred ccCeecccccccccceecCC-CCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVLPDC-NHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~C-gH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.-..|..|.-... .+..| .|..|.+|+.-.+..+..||+|..++.
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4467888876555 44456 599999999999999999999999886
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.32 E-value=0.34 Score=32.78 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=33.5
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 187 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l 187 (242)
....|.||.+.-.-...-.|...||..|+...+. ....||.|....
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4567999987543223347899999999987665 467999997643
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.77 E-value=1.2 Score=32.01 Aligned_cols=49 Identities=27% Similarity=0.700 Sum_probs=37.2
Q ss_pred ccCeeccccccccc-----c--eecCCCCcchHHHHHH-HhccCCCCcCcccccccc
Q 026172 142 REEECGICLEICCK-----I--VLPDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 142 ~~~~C~ICl~~~~~-----~--v~~~CgH~fC~~Ci~~-w~~~~~~CP~CR~~l~~~ 190 (242)
....|.||-+..-. + ..-.|+-..|..|++- ..+.++.||-|+...++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 44689999998541 1 2346888899999966 455899999999998754
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.39 E-value=0.64 Score=32.74 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=28.5
Q ss_pred CccCeecccccccccceecCC----CCcchHHHHHHHhc
Q 026172 141 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA 175 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~C----gH~fC~~Ci~~w~~ 175 (242)
...+.|.+|.+.+++.....| .|.||.-|-+....
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456899999999998754444 79999999988876
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.96 E-value=0.53 Score=38.73 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=33.2
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 187 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l 187 (242)
..+..|.+|...-.-...-.|...||..|+.+-+. +...||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35567999986543223346888999999876544 467999998653
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.23 E-value=1.1 Score=29.44 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=32.6
Q ss_pred cCCccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccc
Q 026172 139 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 185 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~ 185 (242)
+...+..|.+|...-.-...-.|...||..|+..-+. ....||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3446678999987432222346888999999976433 5678999964
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=80.28 E-value=2.1 Score=30.41 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=30.6
Q ss_pred CCccCeeccccccccccee--cCCCCcchHHHHHHHhc----------------cCCCCcCc
Q 026172 140 IEREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRA----------------RSQSCPFC 183 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~--~~CgH~fC~~Ci~~w~~----------------~~~~CP~C 183 (242)
...+..|.||--.-..... --|+-+||..|+++--. ...+||.|
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 3467889999854433222 23789999999998611 35699999
No 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.99 E-value=1.5 Score=30.77 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.5
Q ss_pred CccccCCccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 135 LSEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 135 ~~~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
..|....+...|.+|...|.-. ..-.||+.||..|...
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3455566778999999998732 3458999999999644
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.94 E-value=1.1 Score=35.98 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=32.3
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 187 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l 187 (242)
.+..|.+|.+.-.-...-.|...||..|+.+-+. +...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4467999986533223346888999999866444 467899998653
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.63 E-value=2.4 Score=27.98 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=31.2
Q ss_pred Ceecccccccccce---ecCCCCcchHHHHHHHhccCCCCcCc
Q 026172 144 EECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC 183 (242)
Q Consensus 144 ~~C~ICl~~~~~~v---~~~CgH~fC~~Ci~~w~~~~~~CP~C 183 (242)
..|--|...+.+.. .+.|++.||.+|=.=..+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999886543 57899999999955445567789988
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.91 E-value=5.3 Score=30.51 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHh-----------ccCCCCcCccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 185 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~-----------~~~~~CP~CR~ 185 (242)
...+..|.||.+--.-...-.|-..||..|+.+-+ .....|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556799999764433334788999999998641 24579999954
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=75.85 E-value=5.6 Score=30.88 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=33.9
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHh-----------ccCCCCcCccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR-----------ARSQSCPFCRD 185 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~-----------~~~~~CP~CR~ 185 (242)
...+..|.+|.+--.-...-.|-.+||..|+.+-+ .....||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34568899999866533344788999999998643 24678999963
No 87
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.11 E-value=1.8 Score=30.86 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=27.0
Q ss_pred cccCCccCeecccccccccc----eecCCCCcchHHHHHHH
Q 026172 137 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNW 173 (242)
Q Consensus 137 ~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w 173 (242)
+....+...|.+|...|.-. ..-.||+.||..|...+
T Consensus 14 W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 44445567899999988732 34689999999996543
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.87 E-value=0.74 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=31.3
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCcccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~ 186 (242)
..+..|.||.+.-.-...-.|...||..|+..-+. ....||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45677999987432222346888899999875333 45689999654
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.09 E-value=0.53 Score=30.48 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=30.1
Q ss_pred CCccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccc
Q 026172 140 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 185 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~ 185 (242)
...+..|.+|...-.-...-.|...||..|+.+-+. ....||.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345678999998533223347888899999875332 3456777743
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.79 E-value=1.9 Score=32.65 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=26.3
Q ss_pred cccCCccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 137 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 137 ~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
|....+...|.+|...|.-. ..-.||+.||..|...
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 44444567899999988732 3458999999999643
No 91
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.47 E-value=2.3 Score=34.46 Aligned_cols=44 Identities=16% Similarity=0.393 Sum_probs=30.9
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCcccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 186 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~ 186 (242)
+..|.+|.+.-.-...-.|...||..|+.+=+. +...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 356999986644333446778899999865332 56789999765
No 92
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.42 E-value=2.3 Score=29.73 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=27.0
Q ss_pred CccccCCccCeecccccccccc----eecCCCCcchHHHHH
Q 026172 135 LSEIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYR 171 (242)
Q Consensus 135 ~~~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~ 171 (242)
..|....+...|.+|...|.-. ..-.||..||..|..
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3444556667899999988732 335799999999953
No 93
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.17 E-value=2.1 Score=29.86 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=25.7
Q ss_pred cccCCccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 137 EIDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 137 ~~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
|....+...|.+|...|.-. ..-.||..||..|...
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 33445567899999988732 3458999999999644
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=66.92 E-value=5 Score=36.05 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=34.7
Q ss_pred ccCeeccccccccccee-cCCCCcch--HHHHHHHhc--cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVL-PDCNHSMC--MRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~-~~CgH~fC--~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
-.+.||+-...+..|+. ..|.|.-| ..-+..... ....||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 34899999999998876 68999844 444444333 6789999988765
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=66.91 E-value=2 Score=30.46 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=33.1
Q ss_pred CCccCeecccccccc---cc--eecCCCCcchHHHHHHHh--ccCCCCcCcccccc
Q 026172 140 IEREEECGICLEICC---KI--VLPDCNHSMCMRCYRNWR--ARSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~---~~--v~~~CgH~fC~~Ci~~w~--~~~~~CP~CR~~l~ 188 (242)
.+.+..|.||...-. +. ..-.|.-.||..|+..-. .....||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 456688999997641 11 224688889999996532 25778999966543
No 96
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=66.03 E-value=0.57 Score=32.71 Aligned_cols=20 Identities=20% Similarity=0.835 Sum_probs=16.8
Q ss_pred CCCCcchHHHHHHHhccCCCCc
Q 026172 160 DCNHSMCMRCYRNWRARSQSCP 181 (242)
Q Consensus 160 ~CgH~fC~~Ci~~w~~~~~~CP 181 (242)
.|||.||..|...|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999999866 5664
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=65.32 E-value=5.7 Score=35.57 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=35.1
Q ss_pred ccCeeccccccccccee-cCCCCc--chHHHHHHHhc--cCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVL-PDCNHS--MCMRCYRNWRA--RSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~-~~CgH~--fC~~Ci~~w~~--~~~~CP~CR~~l~ 188 (242)
-.+.||+-...+..|+. ..|.|. |-..-+..... ....||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34789999999998865 689998 44444444433 5789999988765
No 98
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=65.02 E-value=11 Score=34.02 Aligned_cols=61 Identities=20% Similarity=0.416 Sum_probs=40.6
Q ss_pred HhHHHHhhhcccccCCCccccCCccCeecccccccccceec--CCCCcchHHHHHHHhc----------cCCCCcCccc
Q 026172 119 ICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLP--DCNHSMCMRCYRNWRA----------RSQSCPFCRD 185 (242)
Q Consensus 119 ~~~e~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~v~~--~CgH~fC~~Ci~~w~~----------~~~~CP~CR~ 185 (242)
.|.+.|....-. ..+...+..|.+|-+--.-...- +|...||..||...+. ....|=+|..
T Consensus 75 ~Ck~~y~~~~f~------~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 75 PCKDKFLDALFL------YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp HHHHHHHTTTTC------BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred HHHHHHhccCcc------cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 455555554421 11334567899999865433333 8999999999999874 3578988854
No 99
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.15 E-value=1.5 Score=34.51 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=31.4
Q ss_pred ccCeecccccccc-----cceecCCCCcchHHHHHHHhc--cCCCCcCcccc
Q 026172 142 REEECGICLEICC-----KIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDS 186 (242)
Q Consensus 142 ~~~~C~ICl~~~~-----~~v~~~CgH~fC~~Ci~~w~~--~~~~CP~CR~~ 186 (242)
.+..|.+|...|. ..+...|.|.+|..|-. |.. ....|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5789999999865 23567899999999962 322 35567777543
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.37 E-value=2.4 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=32.5
Q ss_pred CccCeecccccccccc-ee--cCCCCcchHHHHHHHhc----cCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKI-VL--PDCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~-v~--~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l~ 188 (242)
.+...|.||....... .+ -.|.-.||..|+..-.. ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3446799998765432 21 36888899999865332 4678999977654
No 101
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=60.26 E-value=17 Score=28.75 Aligned_cols=46 Identities=17% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCccCeeccccccccccee--cCCCCcchHHHHHHHhc----------cCCCCcCccc
Q 026172 140 IEREEECGICLEICCKIVL--PDCNHSMCMRCYRNWRA----------RSQSCPFCRD 185 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~--~~CgH~fC~~Ci~~w~~----------~~~~CP~CR~ 185 (242)
...+..|.||-+--.-... .+|...||..||...+. ....|=+|..
T Consensus 76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3456789999876432222 36889999999998875 2467888853
No 102
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.96 E-value=4.7 Score=25.10 Aligned_cols=41 Identities=22% Similarity=0.593 Sum_probs=26.9
Q ss_pred eeccccccccc--c-eecCCCCcchHHHHHHHhc----cCCCCcCccc
Q 026172 145 ECGICLEICCK--I-VLPDCNHSMCMRCYRNWRA----RSQSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~~--~-v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~ 185 (242)
.|.||...-.. . ..-.|...||..|+.+=+. ....||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47788764321 1 2246888999999965333 4567999965
No 103
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.86 E-value=3.6 Score=29.30 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=32.3
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCcccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~ 186 (242)
..+..|.+|...-.-...-.|.-.||..|+.+=+. ....||.|+..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45578999997643223346778899999966443 46789999754
No 104
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.75 E-value=5.3 Score=27.06 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=22.5
Q ss_pred cCeecccccccccc----eecCCCCcchHHHHH
Q 026172 143 EEECGICLEICCKI----VLPDCNHSMCMRCYR 171 (242)
Q Consensus 143 ~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~ 171 (242)
+..|.+|...|.-. ..-.||+.||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 46899999988732 335799999999953
No 105
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.85 E-value=4.2 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.6
Q ss_pred CccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 141 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
.+...|.+|...|.-- ..-.||+.||..|-..
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3456999999988732 4468999999999654
No 106
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.36 E-value=2.3 Score=38.23 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccCCccCeecccccccccc----eecCCCCcchHHHHHHHh
Q 026172 138 IDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWR 174 (242)
Q Consensus 138 ~~~~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~ 174 (242)
....+...|.+|...|.-. ..-.||+.||..|-....
T Consensus 370 ~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 370 VPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -----------------------------------------
T ss_pred CCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3344567899999988722 346899999999986643
No 107
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.59 E-value=4.2 Score=33.47 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=24.2
Q ss_pred CccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 141 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
.+...|.+|...|.-. ..-.||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3457999999988732 3468999999999643
No 108
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.12 E-value=1.6 Score=28.42 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=30.8
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL 187 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l 187 (242)
.+..|.+|...-.-...-.|...||..|+.+-+. ....||.|....
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4567999987532222347888999999875333 456788886543
No 109
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=54.44 E-value=1.8 Score=28.87 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=31.5
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhc----cCCCCcCcccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~ 186 (242)
..+..|.||.+.-.-...-.|...||..|+.+-+. ....||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35678999997533223347888999999875333 46689999653
No 110
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.34 E-value=3.5 Score=30.36 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=18.8
Q ss_pred cceecCCCCcchHHHHHHHhccCCCCcCcccc
Q 026172 155 KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 155 ~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
.+...+||+.|+ .-......||.|++.
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 445678999991 223356899999875
No 111
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=53.60 E-value=1.3 Score=33.43 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=28.9
Q ss_pred CccCeecccccccccc----eecCCCCcchHHHHHHHhccCCCCcCccc
Q 026172 141 EREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRD 185 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~ 185 (242)
.....|..|...|... ..-.||..||..|..........|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3456899999988732 34689999999997554444566777744
No 112
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=52.26 E-value=6.2 Score=38.85 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=36.1
Q ss_pred ccCeecccccccccc----------eecCCCCcc--------------------hHHHHHHHhc--------cCCCCcCc
Q 026172 142 REEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFC 183 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~----------v~~~CgH~f--------------------C~~Ci~~w~~--------~~~~CP~C 183 (242)
+--.|+-|+..+.+| .+++||-.| |..|-.++.. +...||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 446899999887754 456788777 9999999865 46799999
Q ss_pred ccccc
Q 026172 184 RDSLR 188 (242)
Q Consensus 184 R~~l~ 188 (242)
--.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 65554
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.52 E-value=5.9 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=24.1
Q ss_pred CccCeecccccccccc----eecCCCCcchHHHHHH
Q 026172 141 EREEECGICLEICCKI----VLPDCNHSMCMRCYRN 172 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~----v~~~CgH~fC~~Ci~~ 172 (242)
.+...|.+|...|... ..-.||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3456899999988732 3458999999999644
No 114
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.49 E-value=4.2 Score=29.70 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=30.5
Q ss_pred CccCeeccccccccc---ceecCCCCcchHHHHHHHhc----cCCCCcCcc
Q 026172 141 EREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA----RSQSCPFCR 184 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR 184 (242)
..+..|.||.+.-.. ..--.|+..||..|+..... ....||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 466789999876442 23367999999999976543 345666654
No 115
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.88 E-value=6.7 Score=26.40 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=25.7
Q ss_pred CccCeecccccccccceecCC-CCcchHHHHHHHh
Q 026172 141 EREEECGICLEICCKIVLPDC-NHSMCMRCYRNWR 174 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~C-gH~fC~~Ci~~w~ 174 (242)
++..-|.||.+. .......| |-.||..|++.-.
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 455679999998 33456789 7899999988765
No 116
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=50.66 E-value=6.1 Score=38.18 Aligned_cols=22 Identities=32% Similarity=0.877 Sum_probs=17.8
Q ss_pred hHHHHHHHhc--------cCCCCcCccccc
Q 026172 166 CMRCYRNWRA--------RSQSCPFCRDSL 187 (242)
Q Consensus 166 C~~Ci~~w~~--------~~~~CP~CR~~l 187 (242)
|..|..++.. +...||.|--.+
T Consensus 70 C~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 70 CPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp CHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred ChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 9999998865 568999995544
No 117
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=48.85 E-value=1.9 Score=37.84 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=35.5
Q ss_pred CccCeecccccccccceec----CCC--CcchHHHHHHHhccCCCCcCcccc
Q 026172 141 EREEECGICLEICCKIVLP----DCN--HSMCMRCYRNWRARSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~----~Cg--H~fC~~Ci~~w~~~~~~CP~CR~~ 186 (242)
.....||+|-....-.++. .=| |.+|..|-..|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999999987644332 244 468999999999999999999764
No 118
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.59 E-value=1.9 Score=28.38 Aligned_cols=33 Identities=27% Similarity=0.658 Sum_probs=22.2
Q ss_pred Ceecccccccccc------eecC--CCCcchHHHHHHHhcc
Q 026172 144 EECGICLEICCKI------VLPD--CNHSMCMRCYRNWRAR 176 (242)
Q Consensus 144 ~~C~ICl~~~~~~------v~~~--CgH~fC~~Ci~~w~~~ 176 (242)
..||-|...++.. .... |++.||..|..+|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888777632 2233 7888888888777653
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=48.40 E-value=5.5 Score=30.53 Aligned_cols=30 Identities=27% Similarity=0.689 Sum_probs=22.8
Q ss_pred CccCeecccccccc-----cceecCCCCcchHHHH
Q 026172 141 EREEECGICLEICC-----KIVLPDCNHSMCMRCY 170 (242)
Q Consensus 141 ~~~~~C~ICl~~~~-----~~v~~~CgH~fC~~Ci 170 (242)
..+..|.+|...+. ......|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 46688999999884 2255788888888884
No 120
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=47.05 E-value=7.3 Score=38.31 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=35.1
Q ss_pred ccCeecccccccccc----------eecCCCCcc--------------------hHHHHHHHhc--------cCCCCcCc
Q 026172 142 REEECGICLEICCKI----------VLPDCNHSM--------------------CMRCYRNWRA--------RSQSCPFC 183 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~----------v~~~CgH~f--------------------C~~Ci~~w~~--------~~~~CP~C 183 (242)
+--.|+-|+..+.+| ..++||-.| |..|...+.. +...||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 447899999887754 456777554 9999999865 46799999
Q ss_pred ccccc
Q 026172 184 RDSLR 188 (242)
Q Consensus 184 R~~l~ 188 (242)
--.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 55443
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.21 E-value=3.4 Score=29.50 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=32.2
Q ss_pred cCCccCeecccccccccc---eecCCCCcchHHHHHHHhc----cCCCCcCcccc
Q 026172 139 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRA----RSQSCPFCRDS 186 (242)
Q Consensus 139 ~~~~~~~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~----~~~~CP~CR~~ 186 (242)
...++..|.||...-... ..-.|...||..|+.+-+. ....||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 444567899999765321 2236888899999864332 45679999654
No 122
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=40.73 E-value=16 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.437 Sum_probs=28.6
Q ss_pred CccCeecccccccccceec--C--CC-CcchHHHHHHHh--ccCCCCcCccccc
Q 026172 141 EREEECGICLEICCKIVLP--D--CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 187 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~--~--Cg-H~fC~~Ci~~w~--~~~~~CP~CR~~l 187 (242)
.+...| ||.......++. . |. ..||..|+.--. .....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 455667 898864432221 3 65 589999985211 1567899997654
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.25 E-value=10 Score=27.56 Aligned_cols=12 Identities=25% Similarity=0.977 Sum_probs=10.5
Q ss_pred cchHHHHHHHhc
Q 026172 164 SMCMRCYRNWRA 175 (242)
Q Consensus 164 ~fC~~Ci~~w~~ 175 (242)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999975
No 124
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.19 E-value=8.3 Score=26.09 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCccCeecccccccc---cce--ecCCCCcchHHHHHHHh--ccCCCCcCcccc
Q 026172 140 IEREEECGICLEICC---KIV--LPDCNHSMCMRCYRNWR--ARSQSCPFCRDS 186 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~---~~v--~~~CgH~fC~~Ci~~w~--~~~~~CP~CR~~ 186 (242)
...+..|.||.+.-. +.+ .-.|.-.||..|+..-. .....||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 346678999987641 222 23788899999986432 256788888653
No 125
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.02 E-value=10 Score=27.57 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=10.6
Q ss_pred cchHHHHHHHhc
Q 026172 164 SMCMRCYRNWRA 175 (242)
Q Consensus 164 ~fC~~Ci~~w~~ 175 (242)
.||..|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999975
No 126
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.55 E-value=17 Score=26.68 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=34.4
Q ss_pred Ceeccccccccc---ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+.|..|...+.+ .....=|..||..|+.+.+.....|..|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 678889888852 234456778999999887665558999998886
No 127
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=38.09 E-value=6.9 Score=28.14 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.8
Q ss_pred ccCeeccccccccccee---cCCCCcchHHHHHHHhc---cCCCCcCccc
Q 026172 142 REEECGICLEICCKIVL---PDCNHSMCMRCYRNWRA---RSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~---~~CgH~fC~~Ci~~w~~---~~~~CP~CR~ 185 (242)
+...| ||........+ -.|.-.||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 78766543322 46888899999854222 3579999963
No 128
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.14 E-value=2.5 Score=29.62 Aligned_cols=17 Identities=41% Similarity=1.386 Sum_probs=14.5
Q ss_pred eecCCCCcchHHHHHHH
Q 026172 157 VLPDCNHSMCMRCYRNW 173 (242)
Q Consensus 157 v~~~CgH~fC~~Ci~~w 173 (242)
..+.|++.||..|-..|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 34569999999999988
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.67 E-value=21 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.5
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.....|.-|-+.+...++..-+..||..| +.|-.|+.+|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 34578999999887665555677788877 68889988875
No 130
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.86 E-value=18 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.444 Sum_probs=28.1
Q ss_pred CccCeeccccccccccee--cC--CC-CcchHHHHHHHh--ccCCCCcCccccc
Q 026172 141 EREEECGICLEICCKIVL--PD--CN-HSMCMRCYRNWR--ARSQSCPFCRDSL 187 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~--~~--Cg-H~fC~~Ci~~w~--~~~~~CP~CR~~l 187 (242)
.+...| ||.......++ =. |. ..||..|+.--. .....||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 344567 99886543221 13 55 579999985211 1467999997654
No 131
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.73 E-value=19 Score=22.99 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=26.6
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|+.|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 56888888777555555566777766 67888887775
No 132
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.73 E-value=6.5 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=30.7
Q ss_pred CccCeeccccccccc---cee-cCCCCcchHHHHHHHh-----ccCCCCcCcccc
Q 026172 141 EREEECGICLEICCK---IVL-PDCNHSMCMRCYRNWR-----ARSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~---~v~-~~CgH~fC~~Ci~~w~-----~~~~~CP~CR~~ 186 (242)
++...|++|.....+ .+. -.|..-||..|+.--. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999987642 221 3688889999984321 146789999654
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.73 E-value=52 Score=23.82 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=27.4
Q ss_pred ccCeecccccccc-------cc--eecCCCCcchHHHHHH-------HhccCCCCcCcc
Q 026172 142 REEECGICLEICC-------KI--VLPDCNHSMCMRCYRN-------WRARSQSCPFCR 184 (242)
Q Consensus 142 ~~~~C~ICl~~~~-------~~--v~~~CgH~fC~~Ci~~-------w~~~~~~CP~CR 184 (242)
....|.+|+..-. +. .-..|+..||..|+.. .......||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4467899986521 11 2257999999999842 123566777774
No 134
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.59 E-value=20 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=22.7
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|+-|...+...++..-+..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 35777777666544444566666665 56777766654
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.55 E-value=36 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.5
Q ss_pred CccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 141 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
.....|.-|.+.+...++..-+..||..| +.|-.|..+|.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 34468999999888665555677788877 78999988876
No 136
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.11 E-value=29 Score=22.42 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=26.2
Q ss_pred Ceecccccccc--cceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~--~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|.-|...+. +.++..-+..||..| ..|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 56888888777 345545677777777 67888877765
No 137
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.50 E-value=15 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=29.1
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
....|.-|-..+....+..-+..||..| +.|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3467999998887655555677777777 78889988876
No 138
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.38 E-value=28 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=29.1
Q ss_pred ccCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
....|.-|-..+....+..-+..||..| +.|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 3467999998887655555677777766 78899988876
No 139
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.92 E-value=3.1 Score=29.42 Aligned_cols=47 Identities=13% Similarity=0.400 Sum_probs=32.6
Q ss_pred ccCeecccccccc---ccee--cCCCCcchHHHHHHHh--------ccCCCCcCcccccc
Q 026172 142 REEECGICLEICC---KIVL--PDCNHSMCMRCYRNWR--------ARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~---~~v~--~~CgH~fC~~Ci~~w~--------~~~~~CP~CR~~l~ 188 (242)
.+..|.||...-. ..++ =.|...||..|+.+-+ .....||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4578999998643 2222 3688899999996533 25678999976544
No 140
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.60 E-value=22 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=26.7
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|.+.+....+..-+..||..| ..|-.|..++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888888877655555566777666 77888888774
No 141
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.52 E-value=23 Score=22.81 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=23.0
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|...+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 45777777666444444556666665 66777777664
No 142
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.12 E-value=16 Score=23.66 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=24.1
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|.+.+...++..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 56777777766544444455666666 67777877765
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.97 E-value=26 Score=22.74 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=24.4
Q ss_pred Ceeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|.-|-+.+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 467778777764 34444566677666 67777877765
No 144
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=28.88 E-value=26 Score=25.62 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=33.4
Q ss_pred ccCeeccccccccc---ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+-+.|..|...+.. .....=|..||..|+.+-......|..|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 44788888888752 233445778999998876544448999988775
No 145
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.47 E-value=15 Score=21.30 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=6.4
Q ss_pred Ceeccccccccc
Q 026172 144 EECGICLEICCK 155 (242)
Q Consensus 144 ~~C~ICl~~~~~ 155 (242)
..||+|+..+..
T Consensus 6 FiCP~C~~~l~s 17 (34)
T 3mjh_B 6 FICPQCMKSLGS 17 (34)
T ss_dssp EECTTTCCEESS
T ss_pred cCCcHHHHHcCC
Confidence 455555555443
No 146
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.29 E-value=19 Score=28.53 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=28.9
Q ss_pred ccCeeccccccccc---ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~---~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+-+.|..|...+.. .....=|..||..|+.+-......|+.|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 34677777776653 333345677888887665432226777777664
No 147
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.25 E-value=11 Score=31.49 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=24.3
Q ss_pred eecccccccccc---eecCCCCcchHHHHHHHhc----c-CCCCcCccc
Q 026172 145 ECGICLEICCKI---VLPDCNHSMCMRCYRNWRA----R-SQSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~~~---v~~~CgH~fC~~Ci~~w~~----~-~~~CP~CR~ 185 (242)
.|.+|...-... ..-.|...||..|+.+=+. . ...||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577887642221 2236888999999975443 3 567999964
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.98 E-value=11 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=25.8
Q ss_pred ccCeeccccccccccee--cC--CC-CcchHHHHHHHh--ccCCCCcCccc
Q 026172 142 REEECGICLEICCKIVL--PD--CN-HSMCMRCYRNWR--ARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~--~~--Cg-H~fC~~Ci~~w~--~~~~~CP~CR~ 185 (242)
+..-| ||........+ =. |. ..||..|+.--. .....||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 44556 89886443222 23 66 689999985111 14568888854
No 149
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.91 E-value=14 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=25.7
Q ss_pred eeccccccccccee---cCCCCcchHHHHHHHhc----c-CCCCcCccc
Q 026172 145 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----R-SQSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~~~v~---~~CgH~fC~~Ci~~w~~----~-~~~CP~CR~ 185 (242)
.|.||...-....+ -.|...||..|+.+-+. + ...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677753222222 36888999999875333 3 568888864
No 150
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.66 E-value=11 Score=25.99 Aligned_cols=41 Identities=20% Similarity=0.441 Sum_probs=25.1
Q ss_pred eeccccccccccee---cCCCCcchHHHHHHHhc----cC-CCCcCccc
Q 026172 145 ECGICLEICCKIVL---PDCNHSMCMRCYRNWRA----RS-QSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~~~v~---~~CgH~fC~~Ci~~w~~----~~-~~CP~CR~ 185 (242)
.|.||...-....+ -.|...||..|+.+-+. .. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45566654332222 36788899999876443 23 68888864
No 151
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.09 E-value=33 Score=22.79 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=27.0
Q ss_pred Ceecccccccc--cceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICC--KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~--~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|...+. +.++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 57888988877 444444577777777 78888888775
No 152
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=26.01 E-value=27 Score=25.60 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.6
Q ss_pred cCeecccccccccceecCCCCcchH
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCM 167 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~ 167 (242)
...|..|...-..-+.+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999987766678999999984
No 153
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.73 E-value=20 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=31.4
Q ss_pred CccCeecccccccc---cc--eecCCCCcchHHHHHHHh-------ccCCCCcCcccc
Q 026172 141 EREEECGICLEICC---KI--VLPDCNHSMCMRCYRNWR-------ARSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~---~~--v~~~CgH~fC~~Ci~~w~-------~~~~~CP~CR~~ 186 (242)
..+..|.||..... .. ..-.|.-.||..|+..-+ .....||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997642 12 224788899999986522 256788888654
No 154
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.55 E-value=22 Score=23.80 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=25.5
Q ss_pred cCeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 143 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
...|+-|...+.+.++..-+..||..| ..|..|..++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 356778877776554444566666666 67888887775
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.50 E-value=27 Score=23.03 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.3
Q ss_pred Ceeccccccccc----ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~----~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|-..+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888887774 34444566677777 67888877765
No 156
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.38 E-value=23 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=26.4
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|+.|...+...++..-+..||..| +.|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 47888888877554444566677766 77888888775
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=24.16 E-value=13 Score=24.04 Aligned_cols=43 Identities=16% Similarity=0.475 Sum_probs=25.2
Q ss_pred ccCeecccccccccceec--C--CC-CcchHHHHHHHh--ccCCCCcCccc
Q 026172 142 REEECGICLEICCKIVLP--D--CN-HSMCMRCYRNWR--ARSQSCPFCRD 185 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~v~~--~--Cg-H~fC~~Ci~~w~--~~~~~CP~CR~ 185 (242)
+..-| ||.......++. . |. ..||..|+.--. .....||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34555 898864432221 3 55 579999985111 14668888854
No 158
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.98 E-value=23 Score=22.84 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=20.8
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|.-|.+.+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 45666666655433333455555555 56667766654
No 159
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.91 E-value=45 Score=24.34 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=28.7
Q ss_pred CCccCeecccccccccceec---CCCCcchHHHHHHHhc----cCCCCcCcccccc
Q 026172 140 IEREEECGICLEICCKIVLP---DCNHSMCMRCYRNWRA----RSQSCPFCRDSLR 188 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~~v~~---~CgH~fC~~Ci~~w~~----~~~~CP~CR~~l~ 188 (242)
...+..|.+|.+. .+.+.= .|-..||..|+. +. +...||.|...+.
T Consensus 12 ~~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC-CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 3466789999853 222222 477789999985 32 3567887765443
No 160
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.51 E-value=13 Score=25.60 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=26.3
Q ss_pred eecccccccccc-e--ecCCCCcchHHHHHHHhc----c-CCCCcCccc
Q 026172 145 ECGICLEICCKI-V--LPDCNHSMCMRCYRNWRA----R-SQSCPFCRD 185 (242)
Q Consensus 145 ~C~ICl~~~~~~-v--~~~CgH~fC~~Ci~~w~~----~-~~~CP~CR~ 185 (242)
.|.||...-... + .-.|...||..|+.+-+. . ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643222 1 236888999999875333 3 567888853
No 161
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=25 Score=23.13 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=26.2
Q ss_pred cCeecccccccc-cceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 143 EEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 143 ~~~C~ICl~~~~-~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
...|..|-+.+. ...+..-+..||..| ..|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 357888888876 333333566677766 77888888776
No 162
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.32 E-value=36 Score=22.50 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=25.3
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|.+.+....+..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 56888887776554444566666666 67888887774
No 163
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.00 E-value=36 Score=21.11 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=24.0
Q ss_pred eecccccccccc---ee-c-CCCCcchHHHHHH----HhccCCCCcCcc
Q 026172 145 ECGICLEICCKI---VL-P-DCNHSMCMRCYRN----WRARSQSCPFCR 184 (242)
Q Consensus 145 ~C~ICl~~~~~~---v~-~-~CgH~fC~~Ci~~----w~~~~~~CP~CR 184 (242)
.|.+|.....+. +. - .|.--||..|+.- -......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467787776432 22 2 4777788888721 112577888885
No 164
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.66 E-value=40 Score=23.21 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=22.8
Q ss_pred CCccCeeccccccccc-----ceecCCCCcchHHHH
Q 026172 140 IEREEECGICLEICCK-----IVLPDCNHSMCMRCY 170 (242)
Q Consensus 140 ~~~~~~C~ICl~~~~~-----~v~~~CgH~fC~~Ci 170 (242)
...+..|..|.+.+.- .+...|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3466889999998762 255788888887774
No 165
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.36 E-value=59 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=33.4
Q ss_pred ccCeecccccccccc-eecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 142 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 142 ~~~~C~ICl~~~~~~-v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
+-..|..|...+... ....=|..||..|+.+. ....|+.|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 347888898887753 33456778999998664 3578999988886
No 166
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.74 E-value=5.1 Score=28.12 Aligned_cols=40 Identities=23% Similarity=0.653 Sum_probs=18.1
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..||.|...+... =++.+|..|-..+.... -||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 4566666555421 11333444433322222 5666655553
No 167
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.54 E-value=24 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=16.0
Q ss_pred ecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 158 LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 158 ~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
...|||.|=.. .....||.|..++.++
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 35566665321 2235799998877654
No 168
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.73 E-value=24 Score=19.51 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=8.8
Q ss_pred CCCCcCcccccc
Q 026172 177 SQSCPFCRDSLR 188 (242)
Q Consensus 177 ~~~CP~CR~~l~ 188 (242)
..+||+|+....
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 357999987655
No 169
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.68 E-value=17 Score=28.33 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=29.6
Q ss_pred CccCeeccccccccc---ce-ecCCCCcchHHHHHHH-----hccCCCCcCcccc
Q 026172 141 EREEECGICLEICCK---IV-LPDCNHSMCMRCYRNW-----RARSQSCPFCRDS 186 (242)
Q Consensus 141 ~~~~~C~ICl~~~~~---~v-~~~CgH~fC~~Ci~~w-----~~~~~~CP~CR~~ 186 (242)
++...| +|.....+ .+ .-.|...||..|+.-- ......||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355678 99886531 22 2368889999998321 1257899999764
No 170
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.60 E-value=37 Score=24.73 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=23.8
Q ss_pred eecccccccc---------c-ceecCCCCcchHHHHHHH-------hccCCCCcCc
Q 026172 145 ECGICLEICC---------K-IVLPDCNHSMCMRCYRNW-------RARSQSCPFC 183 (242)
Q Consensus 145 ~C~ICl~~~~---------~-~v~~~CgH~fC~~Ci~~w-------~~~~~~CP~C 183 (242)
.|.+|+..-. + .....|+..||..|+... ......||.|
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 5788876431 1 122478889999998532 1245666666
No 171
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.43 E-value=33 Score=22.13 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=23.6
Q ss_pred Ceeccccccccc--ceecCCCCcchHHHHHHHhccCCCCcCcccccc
Q 026172 144 EECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 188 (242)
Q Consensus 144 ~~C~ICl~~~~~--~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~ 188 (242)
..|..|.+.+.. .++..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccC
Confidence 467888877763 23333556666666 67777877665
No 172
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.42 E-value=5.2 Score=29.07 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=29.0
Q ss_pred CeecccccccccceecCCCCcchHHHHHHHhccCCCCcCcccccccc
Q 026172 144 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 190 (242)
Q Consensus 144 ~~C~ICl~~~~~~v~~~CgH~fC~~Ci~~w~~~~~~CP~CR~~l~~~ 190 (242)
..||+|...+... =++.+|..|-.. ......||-|.+++...
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHHHH
Confidence 7899999877631 244457777543 33567899999988643
Done!