Query 026173
Match_columns 242
No_of_seqs 162 out of 1472
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2289 Rhomboid family protei 100.0 1.5E-38 3.3E-43 278.1 5.0 225 1-235 58-285 (316)
2 PTZ00101 rhomboid-1 protease; 100.0 1E-31 2.2E-36 233.2 18.1 163 31-199 75-240 (278)
3 PRK10907 intramembrane serine 99.9 1.9E-25 4E-30 194.4 13.4 142 52-199 128-270 (276)
4 PF01694 Rhomboid: Rhomboid fa 99.9 3.8E-25 8.3E-30 174.8 4.2 144 55-202 2-145 (145)
5 KOG2290 Rhomboid family protei 99.9 1.2E-24 2.7E-29 194.6 7.4 193 3-201 392-587 (652)
6 COG0705 Membrane associated se 99.9 2.8E-23 6.1E-28 176.8 12.8 143 58-203 67-215 (228)
7 KOG2632 Rhomboid family protei 99.7 4.3E-17 9.3E-22 138.2 6.5 147 50-196 44-195 (258)
8 PF08551 DUF1751: Eukaryotic i 98.4 1.8E-07 3.9E-12 69.6 3.8 82 58-139 7-95 (99)
9 KOG2980 Integral membrane prot 98.1 1.8E-06 3.8E-11 75.2 3.2 145 56-202 152-304 (310)
10 PF04511 DER1: Der1-like famil 97.9 0.00013 2.9E-09 60.8 10.4 68 48-115 31-102 (197)
11 KOG2890 Predicted membrane pro 97.5 0.00029 6.2E-09 61.6 6.5 140 57-202 65-218 (326)
12 KOG0858 Predicted membrane pro 97.0 0.00053 1.2E-08 58.1 2.8 67 48-114 42-112 (239)
13 KOG4463 Uncharacterized conser 95.0 0.0051 1.1E-07 52.9 -0.6 60 55-115 47-106 (323)
14 COG5291 Predicted membrane pro 87.0 0.36 7.9E-06 41.4 1.7 45 52-96 53-99 (313)
15 KOG2290 Rhomboid family protei 76.8 0.98 2.1E-05 42.1 0.6 35 30-64 252-286 (652)
16 PF00220 Hormone_4: Neurohypop 76.2 1.4 3E-05 18.2 0.6 8 2-9 2-9 (9)
17 PF04892 VanZ: VanZ like famil 63.5 61 0.0013 24.4 9.2 37 164-200 88-129 (133)
18 COG4452 CreD Inner membrane pr 61.8 1.4E+02 0.0029 27.7 11.7 116 88-208 314-431 (443)
19 PF06946 Phage_holin_5: Phage 59.1 68 0.0015 23.4 7.5 56 142-197 21-78 (93)
20 COG1296 AzlC Predicted branche 58.5 1.2E+02 0.0026 26.1 11.4 61 133-198 169-229 (238)
21 COG4769 Predicted membrane pro 54.8 54 0.0012 26.7 6.3 25 175-199 139-163 (181)
22 PF09527 ATPase_gene1: Putativ 53.7 57 0.0012 20.9 5.7 41 73-113 8-49 (55)
23 PF07301 DUF1453: Protein of u 53.0 1.2E+02 0.0025 24.2 8.2 30 177-206 54-83 (148)
24 COG0705 Membrane associated se 51.4 8.8 0.00019 32.2 1.5 72 55-145 136-207 (228)
25 PF07895 DUF1673: Protein of u 50.3 28 0.00061 29.1 4.4 14 185-198 83-96 (205)
26 PF03419 Peptidase_U4: Sporula 46.8 1E+02 0.0022 27.0 7.6 35 73-107 11-45 (293)
27 PRK11715 inner membrane protei 40.4 3.2E+02 0.007 25.7 11.4 114 88-206 320-435 (436)
28 PF06123 CreD: Inner membrane 39.5 3.3E+02 0.0072 25.6 11.3 114 88-206 314-429 (430)
29 COG2056 Predicted permease [Ge 39.2 50 0.0011 30.4 4.4 27 181-207 195-221 (444)
30 PF02652 Lactate_perm: L-lacta 37.7 2.4E+02 0.0053 27.2 9.1 20 75-94 100-119 (522)
31 PRK10720 uracil transporter; P 36.8 2.1E+02 0.0045 26.7 8.3 23 182-204 390-412 (428)
32 PRK00183 hypothetical protein; 34.0 25 0.00055 28.2 1.6 16 1-16 1-18 (157)
33 PHA03239 envelope glycoprotein 29.2 3.8E+02 0.0083 25.2 8.6 17 126-142 257-273 (429)
34 PF14898 DUF4491: Domain of un 29.2 1.5E+02 0.0032 21.7 4.6 42 74-116 5-52 (94)
35 PF13829 DUF4191: Domain of un 29.0 2.1E+02 0.0045 24.4 6.3 34 167-200 40-73 (224)
36 PHA03237 envelope glycoprotein 27.0 3E+02 0.0066 25.8 7.5 16 126-141 251-266 (424)
37 PRK15060 L-dehydroascorbate tr 26.3 3.1E+02 0.0067 25.7 7.6 21 177-197 164-185 (425)
38 PF09889 DUF2116: Uncharacteri 26.1 25 0.00053 23.5 0.2 22 220-241 31-52 (59)
39 PF11119 DUF2633: Protein of u 25.9 77 0.0017 21.1 2.5 20 219-238 2-21 (59)
40 TIGR00341 conserved hypothetic 24.4 4.4E+02 0.0095 23.8 7.9 28 179-206 268-295 (325)
41 PF13105 DUF3959: Protein of u 24.2 4.2E+02 0.0091 22.0 7.4 21 181-201 134-154 (239)
42 KOG4112 Signal peptidase subun 23.4 3.1E+02 0.0066 20.1 6.4 8 167-174 37-44 (101)
43 PRK15038 autoinducer 2 import 23.0 1.6E+02 0.0035 26.3 4.9 18 99-116 212-229 (330)
44 COG5336 Uncharacterized protei 22.6 2.7E+02 0.0058 21.1 5.1 42 74-115 51-93 (116)
45 PF04246 RseC_MucC: Positive r 22.5 2.7E+02 0.0059 21.1 5.6 16 184-199 100-115 (135)
46 TIGR02230 ATPase_gene1 F0F1-AT 22.5 3E+02 0.0065 20.3 5.4 42 73-114 50-92 (100)
47 COG3105 Uncharacterized protei 22.0 1.1E+02 0.0025 23.7 3.1 22 179-200 7-28 (138)
48 PF06645 SPC12: Microsomal sig 21.3 2.9E+02 0.0063 19.1 6.6 21 179-199 33-53 (76)
49 PRK10862 SoxR reducing system 21.2 2.7E+02 0.0058 22.1 5.4 25 184-208 107-131 (154)
50 PF12732 YtxH: YtxH-like prote 20.7 1.2E+02 0.0026 20.6 2.9 19 181-199 3-21 (74)
51 PHA03242 envelope glycoprotein 20.5 7.2E+02 0.016 23.4 9.0 17 126-142 248-264 (428)
No 1
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=278.11 Aligned_cols=225 Identities=49% Similarity=0.819 Sum_probs=199.8
Q ss_pred CCcCCCCCCCC---CCcchhccccccceeccCCCCCCCCCCHHHHHHccccCcccccccCceeeeeeeccccccHHHHHH
Q 026173 1 MYVNNCPKNLG---EDRCVFHDHLGRFSFQPRSENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLT 77 (242)
Q Consensus 1 ~~~~~~p~~~~---~~~~~~~~~~~~f~~~~~~~n~~l~p~~~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~ 77 (242)
|+.|+||.+.. +..|+-..++++|.+++.++||..+|+..++...++..-+....++|+||++||+|+|+|+.||.+
T Consensus 58 ~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~ 137 (316)
T KOG2289|consen 58 MYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLL 137 (316)
T ss_pred eeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHH
Confidence 68899998555 667883459999999999999999999989999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 026173 78 NSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCV 157 (242)
Q Consensus 78 N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~ 157 (242)
||+.+..+|..+|..+|.+|+.++|+++|++|+++++++.++. ++|||||++||++|+.++.+..||..++.+..
T Consensus 138 N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~-----~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~~ 212 (316)
T KOG2289|consen 138 NMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNS-----ISVGASGGVFALLGAHLSNLLTNWTIMKNKFA 212 (316)
T ss_pred HHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCC-----ceecccHHHHHHHHHHHHHHHhhHHHhcchHH
Confidence 9999999999999999999999999999999999999999988 89999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCccCCCCCCCCCCCCCCCccchhhHHHHHHHH
Q 026173 158 SITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSGPYIAPGYELNHKKPKYQCHQKLLWVIS 235 (242)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~ 235 (242)
.+..+++++.+++..|+.|.+++++|+||++.|..+++....+.+..+....... -|++.|++..|...|+..
T Consensus 213 ~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~-----~~~~~~~~~~q~~~w~~~ 285 (316)
T KOG2289|consen 213 ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV-----LRVFSKRLPYQLLLWIVL 285 (316)
T ss_pred HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee-----eeccccccccchHHHHHH
Confidence 8888888889999999999999999999999999999999999888887765554 234444444444444433
No 2
>PTZ00101 rhomboid-1 protease; Provisional
Probab=100.00 E-value=1e-31 Score=233.24 Aligned_cols=163 Identities=31% Similarity=0.519 Sum_probs=133.4
Q ss_pred CCCCCCCCHHHHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhH
Q 026173 31 ENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGG 110 (242)
Q Consensus 31 ~n~~l~p~~~~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~ 110 (242)
++..++|+++.+.++|+++++.+ .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|+++|+.|+
T Consensus 75 ~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~ 153 (278)
T PTZ00101 75 PADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGN 153 (278)
T ss_pred ccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 34457899999999999998655 68999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--HHHhc-CChhhHHHHHHHH
Q 026173 111 LLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVN--MAIGF-MPGIDNMAHIGGF 187 (242)
Q Consensus 111 l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~aHlgG~ 187 (242)
+++..+.+.. .++||||++||++|+.++.....|...+.+......++.+.++. +.... .|++|+.||+||+
T Consensus 154 l~s~~~~~~~-----~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~ 228 (278)
T PTZ00101 154 ILSSSVTYCP-----IKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGL 228 (278)
T ss_pred HHHHHHccCC-----cEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 9998877665 78999999999999998877777665544333322222222222 22222 3789999999999
Q ss_pred HHHHHHHHHHhh
Q 026173 188 VAGILLGFILLL 199 (242)
Q Consensus 188 l~G~~~g~~~~~ 199 (242)
++|+++|..+.+
T Consensus 229 i~G~llg~~~~~ 240 (278)
T PTZ00101 229 LSGISMGILYNS 240 (278)
T ss_pred HHHHHHHHHHHh
Confidence 999999998755
No 3
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.93 E-value=1.9e-25 Score=194.40 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=106.9
Q ss_pred cccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechH
Q 026173 52 LVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGAS 131 (242)
Q Consensus 52 ~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaS 131 (242)
....++||||++|++|+|.|+.|+++||+++|.+|..+|+.+|++|++.+|+++++.|++...++.+. ..+|+|
T Consensus 128 ~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~------~~gGaS 201 (276)
T PRK10907 128 DPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGP------WFGGLS 201 (276)
T ss_pred cccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccc------hhhHHH
Confidence 34468999999999999999999999999999999999999999999999999999999998877543 578999
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173 132 GALFGLLGASLSEIITNWTL-YTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 132 g~i~Gl~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~ 199 (242)
|+++|++|+....-...... ...+...+...++++++.....+.+++++.||++|+++|+++|+...+
T Consensus 202 GvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 202 GVVYALMGYVWLRGERDPQSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999864321111000 000112222223333222222234689999999999999999988754
No 4
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.91 E-value=3.8e-25 Score=174.83 Aligned_cols=144 Identities=43% Similarity=0.700 Sum_probs=105.3
Q ss_pred ccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHH
Q 026173 55 YDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGAL 134 (242)
Q Consensus 55 ~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i 134 (242)
+++|+||++||+|+|.|+.|++.|++.++.+|..+|+.+|++++..+|+.+++.+++.+.++.+... +.+|+||++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~----~~~G~Sg~~ 77 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQ----PYVGASGAV 77 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S---------SSHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhcccccccccc----ccCCCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999988876652 689999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173 135 FGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQ 202 (242)
Q Consensus 135 ~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~ 202 (242)
+|++++.......+++....+..........+...+..+..+++++.+|++|+++|++++..+.+|++
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~~ 145 (145)
T PF01694_consen 78 FGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRPQ 145 (145)
T ss_dssp HHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred hHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999986655544333322111111111122233333346899999999999999999999887653
No 5
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-24 Score=194.56 Aligned_cols=193 Identities=27% Similarity=0.418 Sum_probs=167.0
Q ss_pred cCCCCCCCC-CCcchh-ccccccceeccCCCCCCCCCCHHHHHHccccCc-ccccccCceeeeeeeccccccHHHHHHHH
Q 026173 3 VNNCPKNLG-EDRCVF-HDHLGRFSFQPRSENSLFGPSTATLKKLGGLSR-NLVVYDGEIYRFFSCMWLHANVIHLLTNS 79 (242)
Q Consensus 3 ~~~~p~~~~-~~~~~~-~~~~~~f~~~~~~~n~~l~p~~~~l~~~G~~~~-~~i~~~~q~wRllTs~f~H~~~~HL~~N~ 79 (242)
+..=|||-+ .+.|-. +.++|.|.-..+.||..++++..++....|+-| -.--...|+||++||+|+|+|++|++..+
T Consensus 392 ItGRPCCI~~qG~CeIttreYCdFmrG~~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi 471 (652)
T KOG2290|consen 392 ITGRPCCIGTQGLCEITTREYCDFMRGYFHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSI 471 (652)
T ss_pred ecCCcceeccCceeeechHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHH
Confidence 344577777 555541 478999999999999999999999998766544 23335789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 026173 80 LAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSI 159 (242)
Q Consensus 80 ~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~ 159 (242)
..+..+-..+|+..|+.|+.++|++||+.||+.+..+.+.. +.||.||+=+|+++..++.++.+|+...+++..+
T Consensus 472 ~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~-----~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~ 546 (652)
T KOG2290|consen 472 CFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYR-----AEVGPAGSQFGILACLFVELFQSWQILERPWRAF 546 (652)
T ss_pred HHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccc-----cccCCcccccchHHHHHHHHHhhhHhhhhHHHHH
Confidence 99999999999999999999999999999999999999887 8999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 026173 160 TMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRP 201 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~ 201 (242)
.-++..+++..+ |+.|-+|+++|+.|++.|++.++++++.-
T Consensus 547 ~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi 587 (652)
T KOG2290|consen 547 FHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYI 587 (652)
T ss_pred HHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccc
Confidence 666665555444 89999999999999999999999998743
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.90 E-value=2.8e-23 Score=176.76 Aligned_cols=143 Identities=32% Similarity=0.522 Sum_probs=113.6
Q ss_pred ceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHHHHH
Q 026173 58 EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGALFGL 137 (242)
Q Consensus 58 q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i~Gl 137 (242)
|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.+++.+|+.+|+.+++.+..+.+... .+++||||+++|+
T Consensus 67 ~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~---~~~~GASG~i~gl 143 (228)
T COG0705 67 QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGG---APSLGASGAIFGL 143 (228)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHccccc---CcccchhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999888876652 2789999999999
Q ss_pred HHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHHHHhhcccC
Q 026173 138 LGASLSEIITNWTLYT---NKCVSITMLILVIGVNMAIGFMP---GIDNMAHIGGFVAGILLGFILLLRPQY 203 (242)
Q Consensus 138 ~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~v~~~aHlgG~l~G~~~g~~~~~~~~~ 203 (242)
++++.......+.... ........+...+..++..+... ++++.+|++|++.|.+++..+.++.+.
T Consensus 144 lga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~ 215 (228)
T COG0705 144 LGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRK 215 (228)
T ss_pred HHHHHHHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9998643222111111 22333444555555555555443 699999999999999999888765443
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.68 E-value=4.3e-17 Score=138.22 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=108.9
Q ss_pred cccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhHHhhhcccC----CCCCCc
Q 026173 50 RNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFG-FLRIGLLYVLSGFGGGLLSCLHQD----ESQQTL 124 (242)
Q Consensus 50 ~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G-~~~~l~lyl~~gi~g~l~~~l~~~----~~~~~~ 124 (242)
++...++.|.||++||+++|.+..|+++||+.+|..|..+|+.+| +.+++..+...++..+++..+... ....+.
T Consensus 44 ~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~ 123 (258)
T KOG2632|consen 44 PSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYV 123 (258)
T ss_pred CHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 346678999999999999999999999999999999999999999 888888888888888888877642 111112
Q ss_pred ceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 026173 125 QISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFI 196 (242)
Q Consensus 125 ~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~ 196 (242)
...+|.|+..|++++......-...+...........+.++..+....-..|+.|+.+|++|+++|+++++.
T Consensus 124 ~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 124 EGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred cccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 246999999999998864321111111111111223444555544444467999999999999999999984
No 8
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.45 E-value=1.8e-07 Score=69.57 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=65.7
Q ss_pred ceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcc-------cCCCCCCcceeech
Q 026173 58 EIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLH-------QDESQQTLQISVGA 130 (242)
Q Consensus 58 q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~-------~~~~~~~~~~~vGa 130 (242)
..||++|+.|++.++..++.|.+.++..|+.+|+.+|+++++-.....++.+|+...+. ..+...-+.+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 79999999999999999999999999999999999999999998888888888766653 12211011356677
Q ss_pred HHHHHHHHH
Q 026173 131 SGALFGLLG 139 (242)
Q Consensus 131 Sg~i~Gl~g 139 (242)
+|.+.|++.
T Consensus 87 ~~~~~g~lV 95 (99)
T PF08551_consen 87 MGVLAGFLV 95 (99)
T ss_pred HHhHhheEE
Confidence 777777643
No 9
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.12 E-value=1.8e-06 Score=75.22 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=92.9
Q ss_pred cCceeeeeeeccccccHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHH
Q 026173 56 DGEIYRFFSCMWLHANVIHLLTNSLAILFIGV-KLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGAL 134 (242)
Q Consensus 56 ~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~-~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i 134 (242)
.---|.+++|.|-|.+.+|+-.||+.++.+.. ...-..|.-.+..+|+.++..|......-. .......+..||||++
T Consensus 152 ~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~-v~~~~~gp~LGAsGav 230 (310)
T KOG2980|consen 152 KTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDK-VPTSWAGPSLGASGAV 230 (310)
T ss_pred cccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeecc-ccccccccccccchHH
Confidence 34556799999999999999999999888877 667788888999999966666655443321 1101112789999999
Q ss_pred HHHHHHHHHHHHhhhhhhh-----hhHHHHHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173 135 FGLLGASLSEIITNWTLYT-----NKCVSITMLILVIGVNMAIGFM--PGIDNMAHIGGFVAGILLGFILLLRPQ 202 (242)
Q Consensus 135 ~Gl~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~v~~~aHlgG~l~G~~~g~~~~~~~~ 202 (242)
+++++.. ..++++.+.+- -+......+-.+...++....+ ..-|+.+|++|-+.|...+.....|-+
T Consensus 231 ~ai~a~~-~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~ 304 (310)
T KOG2980|consen 231 YAILALD-CTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIR 304 (310)
T ss_pred HHHHHHH-hhcCcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHH
Confidence 9998877 34444433211 1111111111111111111111 245677999999999999988866443
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=97.90 E-value=0.00013 Score=60.79 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=50.5
Q ss_pred cCcccccccCceeeeeeeccccccH-HHHHHHHHHHHHHHHHHHHh-hhh--HHHHHHHHHHHHHhHHhhhc
Q 026173 48 LSRNLVVYDGEIYRFFSCMWLHANV-IHLLTNSLAILFIGVKLEED-FGF--LRIGLLYVLSGFGGGLLSCL 115 (242)
Q Consensus 48 ~~~~~i~~~~q~wRllTs~f~H~~~-~HL~~N~~~l~~~G~~lE~~-~G~--~~~l~lyl~~gi~g~l~~~l 115 (242)
.+++.+.++.|+||++|+.|.-++. .+.++|+..++..+..+|+. ++. ..++...+.+++.-.+.+.+
T Consensus 31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~ 102 (197)
T PF04511_consen 31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLL 102 (197)
T ss_pred ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667889999999999986544 79999999999999999998 333 35666655555555555543
No 11
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.48 E-value=0.00029 Score=61.58 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=90.9
Q ss_pred CceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhc-------ccCCCCCCcceeec
Q 026173 57 GEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCL-------HQDESQQTLQISVG 129 (242)
Q Consensus 57 ~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l-------~~~~~~~~~~~~vG 129 (242)
...|+++|+.|+-.+++..+.|.+.+..-|..+|+.||+..++..|.+.-...++.... +..+...-+.+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 47999999999999999999999999999999999999999988876554333322211 12222222236789
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHH-------HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 026173 130 ASGALFGLLGASLSEIITNWTLYTNKCV-------SITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQ 202 (242)
Q Consensus 130 aSg~i~Gl~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~ 202 (242)
..|.+.|++.++ -.+.+......-+.. .+..++..+++.+. .-...+.+..+..|...++.+++--+
T Consensus 145 ~~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~-----~f~~f~~l~s~~~g~~~sWtYLRfyq 218 (326)
T KOG2890|consen 145 TTGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII-----TFLVFASLPSITFGVLVSWTYLRFYQ 218 (326)
T ss_pred chHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH-----HHHHhhhhHHHHHhhhhhhhhheecc
Confidence 999999998876 344444322211111 11122222222221 23556677777888888888876433
No 12
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=96.97 E-value=0.00053 Score=58.12 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=53.7
Q ss_pred cCcccccccCceeeeeeecccccc-HHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhHHhhh
Q 026173 48 LSRNLVVYDGEIYRFFSCMWLHAN-VIHLLTNSLAILFIGVKLEEDF---GFLRIGLLYVLSGFGGGLLSC 114 (242)
Q Consensus 48 ~~~~~i~~~~q~wRllTs~f~H~~-~~HL~~N~~~l~~~G~~lE~~~---G~~~~l~lyl~~gi~g~l~~~ 114 (242)
.+++.++++.|+||++|+.+.-.. -+|.++||+.++.-..++|+-. .+..++.+.+.+++.-.+.+.
T Consensus 42 ~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 42 LNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred ecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999998866 6899999999999999999843 235777777777777665443
No 13
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0051 Score=52.92 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=51.3
Q ss_pred ccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhc
Q 026173 55 YDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCL 115 (242)
Q Consensus 55 ~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l 115 (242)
+..||||++.+.|...+--.++.-.+.++.+ ..+||.+|+.|+..+-+.++..+.++.+.
T Consensus 47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i 106 (323)
T KOG4463|consen 47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI 106 (323)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence 4589999999999999999998888887766 88999999999988888888777665554
No 14
>COG5291 Predicted membrane protein [Function unknown]
Probab=86.95 E-value=0.36 Score=41.39 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=36.6
Q ss_pred cccccCceeeeeeecccccc-HHHHHHHHHHHHHHHHHHHH-hhhhH
Q 026173 52 LVVYDGEIYRFFSCMWLHAN-VIHLLTNSLAILFIGVKLEE-DFGFL 96 (242)
Q Consensus 52 ~i~~~~q~wRllTs~f~H~~-~~HL~~N~~~l~~~G~~lE~-~~G~~ 96 (242)
..+++.||||++|+-..-++ -+..++|++.++--..++|+ .+++.
T Consensus 53 L~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~ 99 (313)
T COG5291 53 LFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS 99 (313)
T ss_pred hHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence 55688999999997776654 57999999999999999998 34444
No 15
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=76.76 E-value=0.98 Score=42.14 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.3
Q ss_pred CCCCCCCCCHHHHHHccccCcccccccCceeeeee
Q 026173 30 SENSLFGPSTATLKKLGGLSRNLVVYDGEIYRFFS 64 (242)
Q Consensus 30 ~~n~~l~p~~~~l~~~G~~~~~~i~~~~q~wRllT 64 (242)
++||+.||+.++|...|+.+.+-+.++.|.|..+-
T Consensus 252 QeN~WiGP~~~dLI~LGA~fSPCmrrd~q~~~~I~ 286 (652)
T KOG2290|consen 252 QENFWIGPSSADLIHLGAKFSPCMRRDPQVWSAIE 286 (652)
T ss_pred hcCCccCccHHHHHHhccccChhhhcChHHHHHHH
Confidence 58999999999999999999999999999998774
No 16
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=76.16 E-value=1.4 Score=18.19 Aligned_cols=8 Identities=50% Similarity=1.348 Sum_probs=6.2
Q ss_pred CcCCCCCC
Q 026173 2 YVNNCPKN 9 (242)
Q Consensus 2 ~~~~~p~~ 9 (242)
|++|||..
T Consensus 2 ~i~nCP~G 9 (9)
T PF00220_consen 2 YIRNCPIG 9 (9)
T ss_pred ccccCCCC
Confidence 67899963
No 17
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=63.55 E-value=61 Score=24.35 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHhhc
Q 026173 164 LVIGVNMAIGFMP-----GIDNMAHIGGFVAGILLGFILLLR 200 (242)
Q Consensus 164 ~~~~~~~~~~~~~-----~v~~~aHlgG~l~G~~~g~~~~~~ 200 (242)
..+..+....+.| -.|...+..|...|.++...+.++
T Consensus 88 ~sl~iE~~Q~~~~~r~~d~~Dv~~n~~G~~lG~~l~~~~~~~ 129 (133)
T PF04892_consen 88 FSLFIELIQLFLPGRSFDIDDVLANTLGALLGYLLYRLIRKR 129 (133)
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 357789999999999987777653
No 18
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=61.76 E-value=1.4e+02 Score=27.73 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=62.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCC--CCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 026173 88 KLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES--QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILV 165 (242)
Q Consensus 88 ~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~--~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (242)
.+|-.-|.+--..=|++-|+.=.+++.+...-+ .-......=+|.+..++.+.++......|+. ...+.+...
T Consensus 314 ifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~-----g~~f~~~L~ 388 (443)
T COG4452 314 IFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWRN-----GLLFFLALL 388 (443)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHH
Confidence 557666666667778888887777776642211 0001134557888888888887665555432 222233333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCccCC
Q 026173 166 IGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYVSG 208 (242)
Q Consensus 166 ~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~~~ 208 (242)
.+-.+.++.+..-|+.--+|..+.=.+++...+..++.+|..-
T Consensus 389 ~lygvm~glL~~edyALL~Gs~llf~~LaavM~lTRklDwy~~ 431 (443)
T COG4452 389 LLYGVMFGLLNSEDYALLLGSLLLFVALAAVMFLTRKLDWYQV 431 (443)
T ss_pred HHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHheeeecchhhc
Confidence 3334455555555544444443333344444455566666654
No 19
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=59.08 E-value=68 Score=23.42 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCh-hhHHH-HHHHHHHHHHHHHHH
Q 026173 142 LSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPG-IDNMA-HIGGFVAGILLGFIL 197 (242)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~a-HlgG~l~G~~~g~~~ 197 (242)
+...+......++++..++.+++-+++.+.....++ .+... -..|.++|+...-++
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 345555555556666666665555666665555543 33322 356778888776554
No 20
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=58.55 E-value=1.2e+02 Score=26.08 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q 026173 133 ALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILL 198 (242)
Q Consensus 133 ~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~ 198 (242)
--|.+-+.+++.+..+++..+........+....+..... + ..+.-+.|.++|++...+..
T Consensus 169 ldFal~a~Fi~L~~~~~k~~~~~~~~~~~~~~a~~~~~l~---~--~~~~v~~~~la~l~~~~l~~ 229 (238)
T COG1296 169 LDFALPALFIVLVIPQFKRRKTLLSVLASLVLALVALVLF---G--GPWAVLAGILAGLLAALLLA 229 (238)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---h--HHHHHHHHHHHHHHHHHHhc
Confidence 4444444455555666655444433333333332222221 2 44566777778777765543
No 21
>COG4769 Predicted membrane protein [Function unknown]
Probab=54.82 E-value=54 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=17.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhh
Q 026173 175 MPGIDNMAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 175 ~~~v~~~aHlgG~l~G~~~g~~~~~ 199 (242)
.|-....+-+.|...|++....+-.
T Consensus 139 lPll~flGivsG~~vg~~~~~~i~~ 163 (181)
T COG4769 139 LPLLIFLGIVSGTAVGILANTLIIT 163 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888887776644
No 22
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=53.73 E-value=57 Score=20.87 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHhHHhh
Q 026173 73 IHLLTNSLAILFIGVKLEEDFGF-LRIGLLYVLSGFGGGLLS 113 (242)
Q Consensus 73 ~HL~~N~~~l~~~G~~lE~~~G~-~~~l~lyl~~gi~g~l~~ 113 (242)
..++.++..=..+|..+++.+++ ..+..+.++-|+.+++.+
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 35667777778899999999999 566677777777776644
No 23
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=53.05 E-value=1.2e+02 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 026173 177 GIDNMAHIGGFVAGILLGFILLLRPQYGYV 206 (242)
Q Consensus 177 ~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~ 206 (242)
+..+.--+.+++.|.++++.+.+..+++..
T Consensus 54 ~~~~~~~l~A~~~G~lFs~~Li~ts~fEvr 83 (148)
T PF07301_consen 54 RPPWLEVLEAFLVGALFSYPLIKTSKFEVR 83 (148)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhceEEEE
Confidence 567778889999999999888776655444
No 24
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=51.45 E-value=8.8 Score=32.20 Aligned_cols=72 Identities=25% Similarity=0.223 Sum_probs=49.0
Q ss_pred ccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCCCCcceeechHHHH
Q 026173 55 YDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQQTLQISVGASGAL 134 (242)
Q Consensus 55 ~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~~~~~~~vGaSg~i 134 (242)
.++++|+++.+.++|....|...+... ..+...+++...+..+++......+ +.++.++-+
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~------~~va~~aHl 196 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG------PSVAWSAHL 196 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc------hHHHHHHHH
Confidence 466777777777777766666655544 4455567777777777766655433 468899999
Q ss_pred HHHHHHHHHHH
Q 026173 135 FGLLGASLSEI 145 (242)
Q Consensus 135 ~Gl~g~~~~~~ 145 (242)
.|+++..+...
T Consensus 197 ~G~i~G~l~~~ 207 (228)
T COG0705 197 GGLIGGLLLAA 207 (228)
T ss_pred HHHHHHHHHHH
Confidence 99998775443
No 25
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=50.32 E-value=28 Score=29.11 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 026173 185 GGFVAGILLGFILL 198 (242)
Q Consensus 185 gG~l~G~~~g~~~~ 198 (242)
.++++|++++..+.
T Consensus 83 ~~ll~g~~~~L~~~ 96 (205)
T PF07895_consen 83 LFLLAGLILSLYLY 96 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 26
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=46.85 E-value=1e+02 Score=27.03 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026173 73 IHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGF 107 (242)
Q Consensus 73 ~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi 107 (242)
..+++|.+.|+..+..+-+....+|.++--+++++
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll~~A~~Gal 45 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLLLGAAIGAL 45 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 46788999999999999888888887654444333
No 27
>PRK11715 inner membrane protein; Provisional
Probab=40.44 E-value=3.2e+02 Score=25.74 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=55.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCC--CCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 026173 88 KLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES--QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILV 165 (242)
Q Consensus 88 ~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~--~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (242)
.+|-.-+.+--.+=|++-|+.=.+++.+.-.-+ -.....+.=||.+..++++.++.....+++ ....+.....
T Consensus 320 lfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k-----~g~~~~~~L~ 394 (436)
T PRK11715 320 LFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWK-----RGLLFAAALA 394 (436)
T ss_pred HHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHH
Confidence 345444444446678888888777777653221 000113344667778888888766554443 2222222222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 026173 166 IGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYV 206 (242)
Q Consensus 166 ~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~ 206 (242)
.+..+.++.+..-|+.--+|..+.=.+++..+...|+.+|.
T Consensus 395 ~LYg~Ly~lLq~EDyALL~GSllLF~~La~vM~~TR~iDWy 435 (436)
T PRK11715 395 ALYGVLYGLLQSEDYALLLGSLLLFAVLALVMFLTRRIDWY 435 (436)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHheeeccccc
Confidence 22233333333444443334333333444555555555554
No 28
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.51 E-value=3.3e+02 Score=25.60 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCC--CCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 026173 88 KLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES--QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILV 165 (242)
Q Consensus 88 ~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~--~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (242)
.+|-.-+.+--.+=|++-|+.=.+++.+...-+ ......+.=||.+..++++.+......+++ ....+.....
T Consensus 314 lfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k-----~~~~~~~~L~ 388 (430)
T PF06123_consen 314 LFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWK-----RGLIFAGLLA 388 (430)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHH
Confidence 446555555556778888888777777653211 000113344667777888877665554433 2222222222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 026173 166 IGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLRPQYGYV 206 (242)
Q Consensus 166 ~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~~~~~~~ 206 (242)
.+..+.++++..-|+.--+|.++.=.+++..+.-.++-+|.
T Consensus 389 ~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRkiDWy 429 (430)
T PF06123_consen 389 ALYGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRKIDWY 429 (430)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeeccccc
Confidence 22233333333344443444433333445555555555654
No 29
>COG2056 Predicted permease [General function prediction only]
Probab=39.25 E-value=50 Score=30.39 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCccC
Q 026173 181 MAHIGGFVAGILLGFILLLRPQYGYVS 207 (242)
Q Consensus 181 ~aHlgG~l~G~~~g~~~~~~~~~~~~~ 207 (242)
+----|++.|++++.+...|+++.+..
T Consensus 195 ~ip~lgMi~GLl~ai~~~YrKpReY~~ 221 (444)
T COG2056 195 WIPGLGMIVGLLLAIFVSYRKPREYQT 221 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccccc
Confidence 334568899999999885555544443
No 30
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=37.71 E-value=2.4e+02 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 026173 75 LLTNSLAILFIGVKLEEDFG 94 (242)
Q Consensus 75 L~~N~~~l~~~G~~lE~~~G 94 (242)
-+--++.=|.||..+|-.-|
T Consensus 100 r~q~lli~~~Fg~flEgaaG 119 (522)
T PF02652_consen 100 RVQVLLIAFGFGAFLEGAAG 119 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34445566778888887644
No 31
>PRK10720 uracil transporter; Provisional
Probab=36.80 E-value=2.1e+02 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q 026173 182 AHIGGFVAGILLGFILLLRPQYG 204 (242)
Q Consensus 182 aHlgG~l~G~~~g~~~~~~~~~~ 204 (242)
+-..|.++|+++-.++..++|.+
T Consensus 390 gi~~g~~~ai~Lnlll~~~~~~~ 412 (428)
T PRK10720 390 GMALATIVGIGLSLIFKLISKLR 412 (428)
T ss_pred cHHHHHHHHHHHHHHhccccccc
Confidence 33445666666666665444433
No 32
>PRK00183 hypothetical protein; Provisional
Probab=33.97 E-value=25 Score=28.20 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=14.0
Q ss_pred CCcCCCCCCCC--CCcch
Q 026173 1 MYVNNCPKNLG--EDRCV 16 (242)
Q Consensus 1 ~~~~~~p~~~~--~~~~~ 16 (242)
|.++.|||..+ +..||
T Consensus 1 ~~~~~CPCGSg~~y~~CC 18 (157)
T PRK00183 1 MSVSICPCGSGDLLDACC 18 (157)
T ss_pred CCCCCCCCcCCChHHHHh
Confidence 78999999999 77788
No 33
>PHA03239 envelope glycoprotein M; Provisional
Probab=29.24 E-value=3.8e+02 Score=25.19 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=10.5
Q ss_pred eeechHHHHHHHHHHHH
Q 026173 126 ISVGASGALFGLLGASL 142 (242)
Q Consensus 126 ~~vGaSg~i~Gl~g~~~ 142 (242)
..+-.+..++|.+..+.
T Consensus 257 F~v~~~~~v~~ai~~F~ 273 (429)
T PHA03239 257 FGLDIPKATSGALSMFI 273 (429)
T ss_pred eeeehhHHHHHHHHHHH
Confidence 56666666666665553
No 34
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=29.19 E-value=1.5e+02 Score=21.74 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHhHHhhhcc
Q 026173 74 HLLTNSLAILFIGV------KLEEDFGFLRIGLLYVLSGFGGGLLSCLH 116 (242)
Q Consensus 74 HL~~N~~~l~~~G~------~lE~~~G~~~~l~lyl~~gi~g~l~~~l~ 116 (242)
.++.....+..+|. ..|.++|++ ...+|++.|+.....+...
T Consensus 5 Giiigi~tFliIG~fHpiVIk~EYyfg~~-~W~~FL~~Gi~~~~~Sl~~ 52 (94)
T PF14898_consen 5 GIIIGIATFLIIGLFHPIVIKGEYYFGTR-IWPIFLLAGIACIIASLFV 52 (94)
T ss_pred hHHHHHHHHHHHHccCeEEEEEEEecCCC-cHHHHHHHHHHHHHHHHHH
Confidence 34555555555554 348888984 7889999999988877654
No 35
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.02 E-value=2.1e+02 Score=24.42 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=22.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhc
Q 026173 167 GVNMAIGFMPGIDNMAHIGGFVAGILLGFILLLR 200 (242)
Q Consensus 167 ~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~~ 200 (242)
++.+..++.-+.-++--+.|++.|++.+++.+.|
T Consensus 40 ~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~r 73 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSR 73 (224)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444677888999999888887643
No 36
>PHA03237 envelope glycoprotein M; Provisional
Probab=26.97 E-value=3e+02 Score=25.80 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=9.4
Q ss_pred eeechHHHHHHHHHHH
Q 026173 126 ISVGASGALFGLLGAS 141 (242)
Q Consensus 126 ~~vGaSg~i~Gl~g~~ 141 (242)
..+-.+..++|.+..+
T Consensus 251 F~v~~~~~v~~ai~~F 266 (424)
T PHA03237 251 FHLTLWQTITVAIGVF 266 (424)
T ss_pred eeeehhHHHHHHHHHH
Confidence 5566666666655554
No 37
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=26.32 E-value=3.1e+02 Score=25.68 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=11.4
Q ss_pred hhhH-HHHHHHHHHHHHHHHHH
Q 026173 177 GIDN-MAHIGGFVAGILLGFIL 197 (242)
Q Consensus 177 ~v~~-~aHlgG~l~G~~~g~~~ 197 (242)
++|. .--++|++-|++++..+
T Consensus 164 ~~Si~~LF~AGiiPGll~~~~~ 185 (425)
T PRK15060 164 GLSISKLFMAGIAPGIMMGATL 185 (425)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 4443 23456666676665544
No 38
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.14 E-value=25 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=11.5
Q ss_pred CCccchhhHHHHHHHHHHHhHc
Q 026173 220 KKPKYQCHQKLLWVISVVVLFV 241 (242)
Q Consensus 220 ~k~~~~~~~~~l~~~~~~~~~~ 241 (242)
+++|.+..+++++.++.+++++
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666655554443
No 39
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=25.88 E-value=77 Score=21.10 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCCccchhhHHHHHHHHHHH
Q 026173 219 HKKPKYQCHQKLLWVISVVV 238 (242)
Q Consensus 219 ~~k~~~~~~~~~l~~~~~~~ 238 (242)
|+|+..+..+.+|++.+.++
T Consensus 2 r~k~~~~mtriVLLISfiIl 21 (59)
T PF11119_consen 2 RRKKNSRMTRIVLLISFIIL 21 (59)
T ss_pred CCcccchHHHHHHHHHHHHH
Confidence 57778888888887776643
No 40
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=24.43 E-value=4.4e+02 Score=23.81 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 026173 179 DNMAHIGGFVAGILLGFILLLRPQYGYV 206 (242)
Q Consensus 179 ~~~aHlgG~l~G~~~g~~~~~~~~~~~~ 206 (242)
-...++.|+..+-...+.+..-++.+|.
T Consensus 268 L~~~Nl~~I~la~~~vf~~~g~~p~~~~ 295 (325)
T TIGR00341 268 LTLINVAGLMAGSLAGVYVYGIRAYRYY 295 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 3467888888877776666544444433
No 41
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=24.17 E-value=4.2e+02 Score=22.04 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 026173 181 MAHIGGFVAGILLGFILLLRP 201 (242)
Q Consensus 181 ~aHlgG~l~G~~~g~~~~~~~ 201 (242)
.--++|++.|-+++..+.++.
T Consensus 134 llLvgGli~GGLlA~~~hRke 154 (239)
T PF13105_consen 134 LLLVGGLILGGLLAMLIHRKE 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456789999988888876543
No 42
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.36 E-value=3.1e+02 Score=20.15 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 026173 167 GVNMAIGF 174 (242)
Q Consensus 167 ~~~~~~~~ 174 (242)
++.++.|+
T Consensus 37 iVg~i~Gf 44 (101)
T KOG4112|consen 37 IVGFIYGF 44 (101)
T ss_pred HHHHHHHH
Confidence 33444444
No 43
>PRK15038 autoinducer 2 import system permease LsrD; Provisional
Probab=22.97 E-value=1.6e+02 Score=26.34 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhHHhhhcc
Q 026173 99 GLLYVLSGFGGGLLSCLH 116 (242)
Q Consensus 99 l~lyl~~gi~g~l~~~l~ 116 (242)
...|.++|..+++...+.
T Consensus 212 ~~afvisg~laglAG~l~ 229 (330)
T PRK15038 212 CALYAMTGLASAIAAVLL 229 (330)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678888888877766543
No 44
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=2.7e+02 Score=21.06 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHhhhc
Q 026173 74 HLLTNSLAILFIGVKLEEDFGFL-RIGLLYVLSGFGGGLLSCL 115 (242)
Q Consensus 74 HL~~N~~~l~~~G~~lE~~~G~~-~~l~lyl~~gi~g~l~~~l 115 (242)
.++..++.=..+|..+.++.|+. +.++++++-|.++++...+
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45566666677888899888876 6678888888888877665
No 45
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.45 E-value=2.7e+02 Score=21.15 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 026173 184 IGGFVAGILLGFILLL 199 (242)
Q Consensus 184 lgG~l~G~~~g~~~~~ 199 (242)
+.+.+.|++.++.+.+
T Consensus 100 ~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 100 ILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555655554
No 46
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.45 E-value=3e+02 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHhhh
Q 026173 73 IHLLTNSLAILFIGVKLEEDFGFL-RIGLLYVLSGFGGGLLSC 114 (242)
Q Consensus 73 ~HL~~N~~~l~~~G~~lE~~~G~~-~~l~lyl~~gi~g~l~~~ 114 (242)
++++.-++.=..+|..+.+.+++. .+.+++++.|++.++...
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 456666666677888999998863 455667777777666543
No 47
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.96 E-value=1.1e+02 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 026173 179 DNMAHIGGFVAGILLGFILLLR 200 (242)
Q Consensus 179 ~~~aHlgG~l~G~~~g~~~~~~ 200 (242)
.|..-+.|+++|+++|+++.+-
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888888888887653
No 48
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.33 E-value=2.9e+02 Score=19.13 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 026173 179 DNMAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 179 ~~~aHlgG~l~G~~~g~~~~~ 199 (242)
|..--+...++|.++..+..-
T Consensus 33 ~~~~~~~~~~~g~~~~~lv~v 53 (76)
T PF06645_consen 33 SFSYTFYIYGAGVVLTLLVVV 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 344455566666666665543
No 49
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.18 E-value=2.7e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCccCC
Q 026173 184 IGGFVAGILLGFILLLRPQYGYVSG 208 (242)
Q Consensus 184 lgG~l~G~~~g~~~~~~~~~~~~~~ 208 (242)
+.+.+.|+++++.+.++...+..++
T Consensus 107 ~~~~~~g~~~g~~~~r~~~~~~~~~ 131 (154)
T PRK10862 107 LCGALLGGVGGFLLARGLSRKLAAR 131 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555667777777766444333333
No 50
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.72 E-value=1.2e+02 Score=20.65 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026173 181 MAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 181 ~aHlgG~l~G~~~g~~~~~ 199 (242)
.+-+.|.++|.+.|+++-|
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3556788888888888765
No 51
>PHA03242 envelope glycoprotein M; Provisional
Probab=20.51 E-value=7.2e+02 Score=23.39 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=10.9
Q ss_pred eeechHHHHHHHHHHHH
Q 026173 126 ISVGASGALFGLLGASL 142 (242)
Q Consensus 126 ~~vGaSg~i~Gl~g~~~ 142 (242)
..+-.+..++|.+..+.
T Consensus 248 F~v~~~~~v~~ai~~F~ 264 (428)
T PHA03242 248 FHLSLPGTLVCLTAVFA 264 (428)
T ss_pred eeeehhHHHHHHHHHHH
Confidence 56667777777665553
Done!