Query 026173
Match_columns 242
No_of_seqs 162 out of 1472
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 9.3E-27 3.2E-31 190.6 15.1 151 42-199 29-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.4E-27 4.7E-32 197.9 6.6 156 41-203 33-189 (196)
3 4aps_A DI-OR tripeptide H+ sym 38.3 1.9E+02 0.0066 24.8 11.8 40 75-114 64-103 (491)
4 2jq5_A SEC-C motif; structural 18.8 36 0.0012 25.2 0.9 11 6-16 3-15 (128)
5 3qe7_A Uracil permease; uracil 18.7 1.2E+02 0.004 27.0 4.5 19 128-146 335-353 (429)
6 3o7q_A L-fucose-proton symport 14.2 5.3E+02 0.018 21.3 9.8 26 88-113 83-108 (438)
7 3ukw_C Bimax1 peptide; arm rep 13.2 1.2E+02 0.004 15.7 1.7 8 216-223 19-26 (28)
8 3hd7_B Syntaxin-1A; membrane p 12.2 75 0.0026 22.6 1.2 12 225-236 83-94 (109)
9 2l2t_A Receptor tyrosine-prote 11.0 2.8E+02 0.0097 16.4 3.5 33 176-208 5-43 (44)
10 2yvc_D Neprilysin; protein-pep 8.3 1.1E+02 0.0037 15.7 0.6 13 214-226 11-23 (26)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.94 E-value=9.3e-27 Score=190.61 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=112.5
Q ss_pred HHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCCC
Q 026173 42 LKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDESQ 121 (242)
Q Consensus 42 l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~~ 121 (242)
..++.+.+|. ...++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.++
T Consensus 29 ~~~~~~~~p~-~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~-- 105 (181)
T 2xov_A 29 VMLWLAWPFD-PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP-- 105 (181)
T ss_dssp HHHHHSSCCS-GGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred HHHhhcCChh-hccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 4455566663 4578999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCcceeechHHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173 122 QTLQISVGASGALFGLLGASLSEIITNWTL-YTNKCVSITMLILVIGVNMAIGFMPGIDNMAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 122 ~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~g~~~~~ 199 (242)
.++|+||+++|++++.......+.+. ...+........+.++..+.....+++|+.+|++|+++|++++..+.|
T Consensus 106 ----~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 106 ----WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp ----CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999875321111111 000112222222222222221123589999999999999999988765
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=1.4e-27 Score=197.91 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=114.2
Q ss_pred HHHHccccCcccccccCceeeeeeeccccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhhcccCCC
Q 026173 41 TLKKLGGLSRNLVVYDGEIYRFFSCMWLHANVIHLLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSCLHQDES 120 (242)
Q Consensus 41 ~l~~~G~~~~~~i~~~~q~wRllTs~f~H~~~~HL~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~l~~~~~ 120 (242)
.+.++.+..|.. +.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.++
T Consensus 33 ~~~~~~~~~p~~-~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~- 110 (196)
T 2nr9_A 33 DIMYLMHYPAYE-EQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGP- 110 (196)
T ss_dssp HHHHHHSCCCSG-GGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHhhcCCHhh-cccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 345556666644 478999999999999999999999999999999999999999999999999999999999887654
Q ss_pred CCCcceeechHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHhh
Q 026173 121 QQTLQISVGASGALFGLLGASLSEIITNWTLYTNKCVSITMLILVIGVNMAIG-FMPGIDNMAHIGGFVAGILLGFILLL 199 (242)
Q Consensus 121 ~~~~~~~vGaSg~i~Gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~~~g~~~~~ 199 (242)
.++|+||+++|++++....-..+.+....+........+.+...+... ..+++|+.||++|+++|++++..+.+
T Consensus 111 -----~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 111 -----AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp -----CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999997653221111110001111111111122222211 12489999999999999999998876
Q ss_pred cccC
Q 026173 200 RPQY 203 (242)
Q Consensus 200 ~~~~ 203 (242)
+++.
T Consensus 186 ~~~~ 189 (196)
T 2nr9_A 186 LRKN 189 (196)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=38.30 E-value=1.9e+02 Score=24.82 Aligned_cols=40 Identities=10% Similarity=-0.134 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhh
Q 026173 75 LLTNSLAILFIGVKLEEDFGFLRIGLLYVLSGFGGGLLSC 114 (242)
Q Consensus 75 L~~N~~~l~~~G~~lE~~~G~~~~l~lyl~~gi~g~l~~~ 114 (242)
.+.+.+.....|...++.+|.++.+.+-......+.+...
T Consensus 64 ~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 64 ASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 3444445555566655448999887766655555554443
No 4
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=18.77 E-value=36 Score=25.22 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=9.9
Q ss_pred CCCCCC--CCcch
Q 026173 6 CPKNLG--EDRCV 16 (242)
Q Consensus 6 ~p~~~~--~~~~~ 16 (242)
|||..+ ...||
T Consensus 3 CPCGSg~~Y~~CC 15 (128)
T 2jq5_A 3 CVCGSGKTYDDCC 15 (128)
T ss_dssp CSSSSSSCHHHHH
T ss_pred CCCCCCchHHHhC
Confidence 999999 77888
No 5
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=18.70 E-value=1.2e+02 Score=27.03 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=9.7
Q ss_pred echHHHHHHHHHHHHHHHH
Q 026173 128 VGASGALFGLLGASLSEII 146 (242)
Q Consensus 128 vGaSg~i~Gl~g~~~~~~~ 146 (242)
.|+.-.+||.+.+.....+
T Consensus 335 gg~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 335 GGVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444456666665543333
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.20 E-value=5.3e+02 Score=21.31 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=16.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHhh
Q 026173 88 KLEEDFGFLRIGLLYVLSGFGGGLLS 113 (242)
Q Consensus 88 ~lE~~~G~~~~l~lyl~~gi~g~l~~ 113 (242)
.+-+++|.++.+.+-......+.+..
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44568899988766655555555444
No 7
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=13.24 E-value=1.2e+02 Score=15.70 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=3.9
Q ss_pred CCCCCCcc
Q 026173 216 ELNHKKPK 223 (242)
Q Consensus 216 ~~~~~k~~ 223 (242)
+++|++|+
T Consensus 19 epprkrkr 26 (28)
T 3ukw_C 19 EPPRKRKR 26 (28)
T ss_dssp SCCSSCCC
T ss_pred Ccchhhhc
Confidence 44555444
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=12.19 E-value=75 Score=22.55 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=4.8
Q ss_pred hhhHHHHHHHHH
Q 026173 225 QCHQKLLWVISV 236 (242)
Q Consensus 225 ~~~~~~l~~~~~ 236 (242)
+.++++++++++
T Consensus 83 rkk~~i~l~~~~ 94 (109)
T 3hd7_B 83 RRKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCcceehHHHHH
Confidence 333444444333
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.99 E-value=2.8e+02 Score=16.35 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHH------HHHHhhcccCCccCC
Q 026173 176 PGIDNMAHIGGFVAGILL------GFILLLRPQYGYVSG 208 (242)
Q Consensus 176 ~~v~~~aHlgG~l~G~~~------g~~~~~~~~~~~~~~ 208 (242)
++.+..+-.+|.+.|++. ..+++.|++....+|
T Consensus 5 ~~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 5 QHARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CCCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
No 10
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=8.31 E-value=1.1e+02 Score=15.67 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCCCCCCccchh
Q 026173 214 GYELNHKKPKYQC 226 (242)
Q Consensus 214 ~~~~~~~k~~~~~ 226 (242)
+...++.|||.|+
T Consensus 11 dinapkpkkk~rw 23 (26)
T 2yvc_D 11 DINAPKPKKKQRX 23 (26)
T ss_pred cccCCCcchhhcc
Done!