Query 026174
Match_columns 242
No_of_seqs 273 out of 2465
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1162 Predicted GTPases [Gen 99.9 7.3E-22 1.6E-26 172.0 6.9 166 22-223 77-253 (301)
2 KOG2484 GTPase [General functi 99.8 6E-22 1.3E-26 176.2 4.7 148 42-201 152-311 (435)
3 COG1161 Predicted GTPases [Gen 99.8 2.2E-20 4.7E-25 166.8 10.3 163 23-203 21-193 (322)
4 PRK12288 GTPase RsgA; Reviewed 99.8 2.7E-20 5.9E-25 167.5 6.5 169 21-223 116-294 (347)
5 KOG2485 Conserved ATP/GTP bind 99.8 1.5E-19 3.2E-24 156.9 8.5 162 23-202 33-211 (335)
6 KOG1424 Predicted GTP-binding 99.8 8.6E-20 1.9E-24 166.8 7.1 156 45-204 183-376 (562)
7 cd04178 Nucleostemin_like Nucl 99.8 6.6E-19 1.4E-23 144.0 9.5 148 44-197 7-172 (172)
8 PRK12289 GTPase RsgA; Reviewed 99.8 1.8E-19 3.9E-24 162.3 4.8 157 23-218 87-255 (352)
9 PRK09563 rbgA GTPase YlqF; Rev 99.8 2.5E-18 5.4E-23 151.4 11.2 158 26-201 14-180 (287)
10 TIGR03596 GTPase_YlqF ribosome 99.8 3.1E-18 6.7E-23 150.0 11.1 158 26-201 11-177 (276)
11 KOG2423 Nucleolar GTPase [Gene 99.7 7E-19 1.5E-23 156.5 4.8 132 45-202 222-367 (572)
12 cd01858 NGP_1 NGP-1. Autoanti 99.7 1.3E-17 2.7E-22 134.0 7.6 115 57-197 40-157 (157)
13 TIGR00157 ribosome small subun 99.7 6.3E-18 1.4E-22 145.6 5.9 162 22-223 33-208 (245)
14 PRK00098 GTPase RsgA; Reviewed 99.7 6.4E-18 1.4E-22 149.5 4.2 165 22-223 77-253 (298)
15 cd01857 HSR1_MMR1 HSR1/MMR1. 99.7 3.2E-17 7E-22 129.4 7.5 98 57-200 43-141 (141)
16 cd01849 YlqF_related_GTPase Yl 99.7 7.9E-17 1.7E-21 129.1 9.7 135 45-197 8-155 (155)
17 PRK01889 GTPase RsgA; Reviewed 99.7 6.5E-18 1.4E-22 152.8 2.8 143 21-200 108-260 (356)
18 cd01854 YjeQ_engC YjeQ/EngC. 99.7 2.8E-17 6E-22 144.7 4.8 165 20-223 73-250 (287)
19 cd01856 YlqF YlqF. Proteins o 99.6 4.1E-15 8.8E-20 121.1 10.7 118 62-198 53-171 (171)
20 COG1159 Era GTPase [General fu 99.6 1.8E-15 4E-20 131.1 8.6 95 139-237 6-100 (298)
21 COG0486 ThdF Predicted GTPase 99.6 1.5E-15 3.3E-20 138.5 5.1 98 135-237 213-311 (454)
22 PF03193 DUF258: Protein of un 99.6 5.6E-15 1.2E-19 119.0 6.9 112 74-221 2-122 (161)
23 COG1116 TauB ABC-type nitrate/ 99.6 3E-15 6.4E-20 127.2 5.4 115 127-241 17-139 (248)
24 COG3839 MalK ABC-type sugar tr 99.5 7.7E-15 1.7E-19 130.8 4.0 115 128-242 18-143 (338)
25 cd01855 YqeH YqeH. YqeH is an 99.5 6E-14 1.3E-18 115.9 7.9 105 62-197 68-190 (190)
26 COG2884 FtsE Predicted ATPase 99.5 3E-14 6.6E-19 116.4 5.1 122 121-242 10-147 (223)
27 COG1160 Predicted GTPases [Gen 99.5 7.1E-14 1.5E-18 127.3 7.6 159 62-240 119-278 (444)
28 cd01859 MJ1464 MJ1464. This f 99.5 9.8E-14 2.1E-18 111.0 7.5 113 57-197 42-156 (156)
29 PF02421 FeoB_N: Ferrous iron 99.5 1.8E-13 4E-18 109.9 8.7 89 141-234 2-90 (156)
30 PF01926 MMR_HSR1: 50S ribosom 99.5 5.3E-13 1.2E-17 101.4 10.3 92 141-235 1-92 (116)
31 PRK13796 GTPase YqeH; Provisio 99.4 2.9E-13 6.4E-18 123.0 8.5 123 45-199 78-222 (365)
32 COG1126 GlnQ ABC-type polar am 99.4 3.8E-14 8.3E-19 118.0 2.3 115 127-241 16-145 (240)
33 COG1160 Predicted GTPases [Gen 99.4 7.7E-13 1.7E-17 120.7 9.1 95 140-238 4-99 (444)
34 KOG1423 Ras-like GTPase ERA [C 99.4 5.5E-13 1.2E-17 115.9 7.5 99 136-234 69-167 (379)
35 COG1120 FepC ABC-type cobalami 99.4 2.8E-13 6.1E-18 116.7 5.0 114 128-241 17-147 (258)
36 COG3842 PotA ABC-type spermidi 99.4 1.5E-13 3.2E-18 123.2 3.3 114 128-241 20-145 (352)
37 COG1084 Predicted GTPase [Gene 99.4 2E-12 4.2E-17 113.5 10.0 97 137-237 166-262 (346)
38 TIGR03597 GTPase_YqeH ribosome 99.4 1.3E-12 2.9E-17 118.5 8.7 107 62-200 97-217 (360)
39 COG1136 SalX ABC-type antimicr 99.4 2.3E-13 5E-18 115.1 3.0 115 128-242 20-152 (226)
40 PRK00093 GTP-binding protein D 99.4 5.6E-12 1.2E-16 116.8 12.2 102 137-239 171-272 (435)
41 TIGR00436 era GTP-binding prot 99.4 3.5E-12 7.6E-17 111.3 10.2 93 141-237 2-94 (270)
42 PRK03003 GTP-binding protein D 99.4 6.8E-12 1.5E-16 117.7 12.6 157 62-239 153-310 (472)
43 COG1135 AbcC ABC-type metal io 99.4 4.2E-13 9.1E-18 117.1 4.1 114 128-241 21-150 (339)
44 TIGR03594 GTPase_EngA ribosome 99.4 7.1E-12 1.5E-16 115.8 12.5 157 62-239 114-271 (429)
45 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 3.8E-13 8.2E-18 115.5 3.3 114 128-241 19-148 (254)
46 COG4525 TauB ABC-type taurine 99.3 1.9E-12 4E-17 106.6 6.6 114 128-241 20-141 (259)
47 TIGR00450 mnmE_trmE_thdF tRNA 99.3 9.2E-13 2E-17 122.4 3.9 99 134-237 198-297 (442)
48 PRK05291 trmE tRNA modificatio 99.3 1.2E-12 2.5E-17 122.1 4.0 97 135-236 211-308 (449)
49 COG1122 CbiO ABC-type cobalt t 99.3 3.5E-12 7.6E-17 109.1 5.8 115 128-242 19-148 (235)
50 PRK09518 bifunctional cytidyla 99.3 3.1E-11 6.7E-16 118.5 12.8 159 62-239 390-549 (712)
51 PRK00089 era GTPase Era; Revie 99.3 2.3E-11 5.1E-16 107.0 10.1 95 139-237 5-99 (292)
52 TIGR03156 GTP_HflX GTP-binding 99.3 1E-10 2.2E-15 105.9 14.3 95 138-237 188-283 (351)
53 KOG1191 Mitochondrial GTPase [ 99.3 2E-11 4.3E-16 112.0 8.9 103 133-239 262-365 (531)
54 PRK15494 era GTPase Era; Provi 99.3 2.4E-11 5.3E-16 109.4 9.4 93 141-237 54-146 (339)
55 COG1125 OpuBA ABC-type proline 99.2 2.4E-12 5.2E-17 109.7 2.4 115 127-241 15-144 (309)
56 COG1118 CysA ABC-type sulfate/ 99.2 5.8E-12 1.3E-16 109.8 4.3 113 129-241 18-146 (345)
57 COG3840 ThiQ ABC-type thiamine 99.2 3.8E-12 8.2E-17 103.7 2.6 109 133-241 19-138 (231)
58 COG1117 PstB ABC-type phosphat 99.2 2.5E-12 5.4E-17 107.1 1.5 118 125-242 19-159 (253)
59 PRK11058 GTPase HflX; Provisio 99.2 2.4E-10 5.3E-15 105.8 14.2 92 140-236 198-290 (426)
60 PRK11650 ugpC glycerol-3-phosp 99.2 4.9E-12 1.1E-16 114.6 2.8 115 128-242 19-144 (356)
61 COG2262 HflX GTPases [General 99.2 1.9E-10 4.1E-15 103.8 12.8 128 105-237 156-286 (411)
62 COG3638 ABC-type phosphate/pho 99.2 5.1E-12 1.1E-16 106.6 2.4 117 125-241 16-156 (258)
63 cd01853 Toc34_like Toc34-like 99.2 1.3E-10 2.8E-15 100.4 10.9 99 133-232 25-124 (249)
64 PRK11432 fbpC ferric transport 99.2 7.5E-12 1.6E-16 113.2 3.1 114 129-242 22-146 (351)
65 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9.5E-11 2.1E-15 97.3 9.5 92 141-234 2-95 (196)
66 PRK12298 obgE GTPase CgtA; Rev 99.2 4.6E-11 9.9E-16 109.4 8.0 93 135-233 155-248 (390)
67 cd01900 YchF YchF subfamily. 99.2 4.4E-11 9.6E-16 104.5 7.2 87 142-234 1-104 (274)
68 TIGR03265 PhnT2 putative 2-ami 99.2 9.7E-12 2.1E-16 112.6 3.0 114 129-242 20-144 (353)
69 PRK09601 GTP-binding protein Y 99.2 8.3E-11 1.8E-15 106.2 8.9 89 140-234 3-108 (364)
70 TIGR02314 ABC_MetN D-methionin 99.2 1E-11 2.2E-16 111.9 3.0 114 128-241 20-149 (343)
71 TIGR01186 proV glycine betaine 99.2 9E-12 1.9E-16 113.1 2.6 115 128-242 8-139 (363)
72 COG4175 ProV ABC-type proline/ 99.2 1.1E-11 2.3E-16 108.6 2.8 114 128-241 43-173 (386)
73 PTZ00258 GTP-binding protein; 99.2 8.4E-11 1.8E-15 107.2 8.3 91 137-233 19-126 (390)
74 PRK09452 potA putrescine/sperm 99.2 1.3E-11 2.8E-16 112.6 2.9 114 129-242 30-154 (375)
75 COG1124 DppF ABC-type dipeptid 99.2 2E-11 4.4E-16 103.4 3.8 113 128-242 22-151 (252)
76 TIGR00960 3a0501s02 Type II (G 99.2 1.5E-11 3.3E-16 103.5 2.7 114 128-241 18-147 (216)
77 TIGR03258 PhnT 2-aminoethylpho 99.2 1.7E-11 3.7E-16 111.3 3.2 115 128-242 20-147 (362)
78 TIGR01188 drrA daunorubicin re 99.1 1.5E-11 3.3E-16 109.0 2.7 114 128-241 8-133 (302)
79 cd03265 ABC_DrrA DrrA is the A 99.1 1.8E-11 4E-16 103.3 2.9 114 128-241 15-140 (220)
80 PRK13537 nodulation ABC transp 99.1 2E-11 4.3E-16 108.5 3.2 115 128-242 22-148 (306)
81 cd03259 ABC_Carb_Solutes_like 99.1 2E-11 4.2E-16 102.6 2.9 114 128-241 15-139 (213)
82 COG0218 Predicted GTPase [Gene 99.1 1.7E-10 3.8E-15 95.3 8.4 97 138-237 23-121 (200)
83 COG1131 CcmA ABC-type multidru 99.1 2.6E-11 5.7E-16 107.1 3.4 115 127-241 19-145 (293)
84 TIGR01166 cbiO cobalt transpor 99.1 2.7E-11 5.9E-16 100.0 3.2 115 128-242 7-137 (190)
85 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 2.4E-11 5.3E-16 102.3 3.0 114 128-241 19-149 (218)
86 TIGR02673 FtsE cell division A 99.1 2.5E-11 5.3E-16 102.0 2.9 114 128-241 17-146 (214)
87 cd01898 Obg Obg subfamily. Th 99.1 1.1E-10 2.4E-15 93.5 6.5 89 141-235 2-91 (170)
88 PRK11000 maltose/maltodextrin 99.1 2.4E-11 5.2E-16 110.6 3.0 114 128-241 18-142 (369)
89 PRK11607 potG putrescine trans 99.1 2.7E-11 5.8E-16 110.6 3.1 114 129-242 35-159 (377)
90 cd04164 trmE TrmE (MnmE, ThdF, 99.1 5.7E-10 1.2E-14 87.6 10.2 95 139-237 1-95 (157)
91 cd03293 ABC_NrtD_SsuB_transpor 99.1 2.9E-11 6.2E-16 102.1 2.9 114 128-241 19-140 (220)
92 PRK11629 lolD lipoprotein tran 99.1 2.9E-11 6.4E-16 103.0 2.9 114 128-241 24-154 (233)
93 TIGR02211 LolD_lipo_ex lipopro 99.1 3.3E-11 7.1E-16 101.7 3.1 114 128-241 20-150 (221)
94 cd03263 ABC_subfamily_A The AB 99.1 3E-11 6.4E-16 101.9 2.5 114 128-241 17-142 (220)
95 TIGR03594 GTPase_EngA ribosome 99.1 3.6E-10 7.8E-15 104.5 9.9 91 142-237 2-93 (429)
96 PRK12299 obgE GTPase CgtA; Rev 99.1 1.6E-10 3.4E-15 103.9 7.2 97 133-235 152-249 (335)
97 COG4181 Predicted ABC-type tra 99.1 7E-11 1.5E-15 95.5 4.3 114 128-241 25-155 (228)
98 TIGR01288 nodI ATP-binding ABC 99.1 3.7E-11 8.1E-16 106.5 3.1 114 128-241 19-144 (303)
99 cd03225 ABC_cobalt_CbiO_domain 99.1 3.8E-11 8.3E-16 100.6 3.0 114 128-241 16-143 (211)
100 TIGR03608 L_ocin_972_ABC putat 99.1 3.5E-11 7.6E-16 100.4 2.7 114 128-241 13-143 (206)
101 cd03261 ABC_Org_Solvent_Resist 99.1 4.2E-11 9.1E-16 102.1 3.1 114 128-241 15-145 (235)
102 cd03301 ABC_MalK_N The N-termi 99.1 4.2E-11 9.1E-16 100.5 3.0 114 128-241 15-139 (213)
103 cd03266 ABC_NatA_sodium_export 99.1 3.1E-11 6.7E-16 101.7 2.1 114 128-241 20-145 (218)
104 PRK10851 sulfate/thiosulfate t 99.1 4.4E-11 9.5E-16 108.3 3.3 114 128-241 17-145 (353)
105 PRK12296 obgE GTPase CgtA; Rev 99.1 2.2E-10 4.8E-15 107.4 8.0 97 132-234 152-248 (500)
106 PRK11153 metN DL-methionine tr 99.1 4.1E-11 8.9E-16 108.1 2.9 114 128-241 20-149 (343)
107 PRK13637 cbiO cobalt transport 99.1 5.4E-11 1.2E-15 104.7 3.6 114 128-241 22-153 (287)
108 PRK10070 glycine betaine trans 99.1 4.4E-11 9.6E-16 109.8 3.1 114 128-241 43-173 (400)
109 cd01878 HflX HflX subfamily. 99.1 3E-09 6.5E-14 88.4 13.6 96 137-237 39-135 (204)
110 COG4152 ABC-type uncharacteriz 99.1 2.5E-11 5.5E-16 103.0 1.0 116 127-242 16-140 (300)
111 PRK10584 putative ABC transpor 99.1 6.4E-11 1.4E-15 100.5 3.2 114 128-241 25-155 (228)
112 PRK13650 cbiO cobalt transport 99.1 5.5E-11 1.2E-15 104.2 2.9 114 128-241 22-149 (279)
113 KOG1489 Predicted GTP-binding 99.1 1.2E-10 2.5E-15 102.0 4.8 98 133-236 190-288 (366)
114 PRK11248 tauB taurine transpor 99.1 6E-11 1.3E-15 102.7 2.9 114 128-241 16-137 (255)
115 PRK13536 nodulation factor exp 99.1 6.3E-11 1.4E-15 106.8 3.1 114 128-241 56-181 (340)
116 COG4604 CeuD ABC-type enteroch 99.1 2.3E-11 5E-16 100.3 0.2 115 127-241 15-144 (252)
117 cd03258 ABC_MetN_methionine_tr 99.1 6.6E-11 1.4E-15 100.7 3.0 114 128-241 20-149 (233)
118 cd03269 ABC_putative_ATPase Th 99.1 5.4E-11 1.2E-15 99.7 2.4 114 128-241 15-137 (210)
119 cd03292 ABC_FtsE_transporter F 99.1 5.7E-11 1.2E-15 99.7 2.5 114 128-241 16-145 (214)
120 cd03294 ABC_Pro_Gly_Bertaine T 99.1 6.8E-11 1.5E-15 103.1 3.1 114 128-241 39-169 (269)
121 TIGR03522 GldA_ABC_ATP gliding 99.1 6E-11 1.3E-15 105.1 2.7 114 128-241 17-142 (301)
122 cd03264 ABC_drug_resistance_li 99.1 4.6E-11 1E-15 100.2 1.9 113 128-241 15-139 (211)
123 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 6.5E-11 1.4E-15 101.1 2.8 114 128-241 16-141 (236)
124 PRK10908 cell division protein 99.1 6.6E-11 1.4E-15 100.0 2.8 114 128-241 17-146 (222)
125 PRK13651 cobalt transporter AT 99.1 7.3E-11 1.6E-15 104.9 3.1 114 128-241 22-174 (305)
126 TIGR03415 ABC_choXWV_ATP choli 99.1 7E-11 1.5E-15 107.9 2.8 114 128-241 39-173 (382)
127 cd03218 ABC_YhbG The ABC trans 99.1 8.6E-11 1.9E-15 99.9 3.2 114 128-241 15-142 (232)
128 cd03235 ABC_Metallic_Cations A 99.1 7.4E-11 1.6E-15 99.1 2.7 114 128-241 14-141 (213)
129 COG1127 Ttg2A ABC-type transpo 99.1 1.7E-10 3.6E-15 97.7 4.8 114 128-241 23-154 (263)
130 PRK13635 cbiO cobalt transport 99.1 9.5E-11 2.1E-15 102.8 3.4 114 128-241 22-149 (279)
131 PRK13647 cbiO cobalt transport 99.0 8E-11 1.7E-15 103.0 2.8 114 128-241 20-147 (274)
132 cd04163 Era Era subfamily. Er 99.0 1.7E-09 3.8E-14 85.1 10.1 94 139-236 3-96 (168)
133 PRK13636 cbiO cobalt transport 99.0 1.1E-10 2.4E-15 102.5 3.5 114 128-241 21-150 (283)
134 cd01896 DRG The developmentall 99.0 7.1E-10 1.5E-14 94.8 8.3 90 141-236 2-91 (233)
135 cd03295 ABC_OpuCA_Osmoprotecti 99.0 1.1E-10 2.3E-15 100.1 3.0 114 128-241 16-144 (242)
136 cd03296 ABC_CysA_sulfate_impor 99.0 1.2E-10 2.5E-15 99.7 3.1 114 128-241 17-145 (239)
137 PRK13641 cbiO cobalt transport 99.0 1.3E-10 2.9E-15 102.2 3.5 114 128-241 22-154 (287)
138 PRK13640 cbiO cobalt transport 99.0 1.2E-10 2.6E-15 102.2 3.1 114 128-241 22-152 (282)
139 PRK13638 cbiO cobalt transport 99.0 1.4E-10 3E-15 101.1 3.4 114 128-241 16-145 (271)
140 cd03226 ABC_cobalt_CbiO_domain 99.0 8.3E-11 1.8E-15 98.3 1.9 110 128-241 15-135 (205)
141 PRK13644 cbiO cobalt transport 99.0 1.3E-10 2.9E-15 101.6 3.3 114 128-241 17-145 (274)
142 PRK13646 cbiO cobalt transport 99.0 1.2E-10 2.5E-15 102.5 2.8 114 128-241 22-154 (286)
143 TIGR00991 3a0901s02IAP34 GTP-b 99.0 1.6E-09 3.4E-14 95.8 9.9 92 137-231 36-127 (313)
144 PRK13643 cbiO cobalt transport 99.0 1.6E-10 3.6E-15 101.7 3.6 114 128-241 21-153 (288)
145 cd03262 ABC_HisP_GlnQ_permease 99.0 1.6E-10 3.4E-15 96.9 3.4 114 128-241 15-144 (213)
146 cd01895 EngA2 EngA2 subfamily. 99.0 2.1E-09 4.5E-14 85.6 9.7 97 140-237 3-99 (174)
147 PRK12297 obgE GTPase CgtA; Rev 99.0 7.3E-10 1.6E-14 102.4 7.7 96 134-235 153-249 (424)
148 cd03219 ABC_Mj1267_LivG_branch 99.0 1.5E-10 3.2E-15 98.7 3.0 114 128-241 15-152 (236)
149 TIGR03598 GTPase_YsxC ribosome 99.0 2.2E-09 4.8E-14 87.6 9.7 99 137-238 16-116 (179)
150 cd01894 EngA1 EngA1 subfamily. 99.0 1.4E-09 3.1E-14 85.5 8.3 91 143-237 1-91 (157)
151 PRK13652 cbiO cobalt transport 99.0 1.6E-10 3.5E-15 101.2 3.1 114 128-241 19-146 (277)
152 PRK03003 GTP-binding protein D 99.0 1.2E-09 2.5E-14 102.7 9.0 96 137-237 36-132 (472)
153 PRK00093 GTP-binding protein D 99.0 2E-09 4.3E-14 99.8 10.4 93 140-237 2-95 (435)
154 PRK13632 cbiO cobalt transport 99.0 1.5E-10 3.4E-15 100.9 2.9 114 128-241 24-151 (271)
155 PRK13548 hmuV hemin importer A 99.0 1.6E-10 3.5E-15 100.1 2.9 114 128-241 17-143 (258)
156 cd01881 Obg_like The Obg-like 99.0 4E-10 8.6E-15 90.6 4.9 86 144-235 1-87 (176)
157 PRK13649 cbiO cobalt transport 99.0 2.1E-10 4.7E-15 100.4 3.5 114 128-241 22-154 (280)
158 PRK13634 cbiO cobalt transport 99.0 1.9E-10 4.2E-15 101.4 3.1 114 128-241 22-154 (290)
159 PRK09493 glnQ glutamine ABC tr 99.0 2E-10 4.4E-15 98.2 2.9 115 128-242 16-146 (240)
160 PRK10895 lipopolysaccharide AB 99.0 2E-10 4.3E-15 98.3 2.7 114 128-241 18-146 (241)
161 PRK13633 cobalt transporter AT 99.0 2.6E-10 5.6E-15 100.0 3.4 114 128-241 25-153 (280)
162 PRK13648 cbiO cobalt transport 99.0 2.7E-10 5.8E-15 99.3 3.4 114 128-241 24-151 (269)
163 TIGR02729 Obg_CgtA Obg family 99.0 9E-10 2E-14 98.8 6.8 97 133-235 151-248 (329)
164 cd03267 ABC_NatA_like Similar 99.0 2.3E-10 4.9E-15 97.9 2.8 114 128-241 36-162 (236)
165 PRK13639 cbiO cobalt transport 99.0 2.7E-10 5.8E-15 99.6 3.2 114 128-241 17-146 (275)
166 PRK11124 artP arginine transpo 99.0 2.6E-10 5.7E-15 97.6 3.0 114 128-241 17-150 (242)
167 TIGR01184 ntrCD nitrate transp 99.0 2.3E-10 4.9E-15 97.5 2.5 112 130-241 2-123 (230)
168 cd03298 ABC_ThiQ_thiamine_tran 99.0 3.9E-10 8.5E-15 94.5 3.8 111 131-241 16-137 (211)
169 PRK11831 putative ABC transpor 99.0 2.6E-10 5.7E-15 99.4 2.8 114 128-241 22-152 (269)
170 TIGR01277 thiQ thiamine ABC tr 99.0 3.4E-10 7.3E-15 95.2 3.2 112 130-241 15-137 (213)
171 cd03260 ABC_PstB_phosphate_tra 99.0 2.9E-10 6.3E-15 96.4 2.7 114 128-241 15-150 (227)
172 PRK11264 putative amino-acid A 99.0 4E-10 8.7E-15 96.9 3.6 114 128-241 18-153 (250)
173 PF04548 AIG1: AIG1 family; I 99.0 3.9E-09 8.5E-14 88.9 9.5 91 141-233 2-94 (212)
174 TIGR02770 nickel_nikD nickel i 99.0 3.9E-10 8.4E-15 96.0 3.4 113 129-241 2-134 (230)
175 COG0370 FeoB Fe2+ transport sy 99.0 3E-09 6.6E-14 101.3 9.6 90 140-234 4-93 (653)
176 TIGR02324 CP_lyasePhnL phospho 99.0 4.2E-10 9.2E-15 95.2 3.5 114 128-241 23-158 (224)
177 PRK15079 oligopeptide ABC tran 99.0 3.1E-10 6.8E-15 101.9 2.8 114 128-241 36-170 (331)
178 PRK09554 feoB ferrous iron tra 99.0 2.8E-09 6.1E-14 105.1 9.7 95 140-235 4-98 (772)
179 PRK13642 cbiO cobalt transport 99.0 3.6E-10 7.7E-15 99.0 3.0 114 128-241 22-149 (277)
180 COG1163 DRG Predicted GTPase [ 99.0 8.4E-10 1.8E-14 97.0 5.3 93 139-237 63-155 (365)
181 TIGR02315 ABC_phnC phosphonate 98.9 4.2E-10 9E-15 96.3 3.2 114 128-241 17-154 (243)
182 cd03300 ABC_PotA_N PotA is an 98.9 4.9E-10 1.1E-14 95.4 3.5 114 128-241 15-139 (232)
183 TIGR02769 nickel_nikE nickel i 98.9 4.4E-10 9.6E-15 97.7 3.2 114 128-241 26-159 (265)
184 PRK09518 bifunctional cytidyla 98.9 2.9E-09 6.2E-14 104.7 9.2 95 139-237 275-369 (712)
185 COG4559 ABC-type hemin transpo 98.9 3.1E-10 6.7E-15 94.6 2.0 114 128-241 16-144 (259)
186 PRK13645 cbiO cobalt transport 98.9 4.3E-10 9.3E-15 99.0 3.0 114 128-241 26-159 (289)
187 cd03299 ABC_ModC_like Archeal 98.9 4.8E-10 1E-14 95.8 3.2 114 128-241 14-138 (235)
188 COG0411 LivG ABC-type branched 98.9 1.8E-10 3.9E-15 97.7 0.5 114 128-241 19-158 (250)
189 TIGR03005 ectoine_ehuA ectoine 98.9 4.4E-10 9.5E-15 96.9 2.9 114 128-241 15-155 (252)
190 TIGR00972 3a0107s01c2 phosphat 98.9 5.6E-10 1.2E-14 95.9 3.5 114 128-241 16-153 (247)
191 cd01899 Ygr210 Ygr210 subfamil 98.9 2.6E-09 5.6E-14 95.4 7.7 87 142-234 1-111 (318)
192 cd03268 ABC_BcrA_bacitracin_re 98.9 3E-10 6.6E-15 95.0 1.6 110 128-241 15-135 (208)
193 cd03256 ABC_PhnC_transporter A 98.9 5.3E-10 1.2E-14 95.5 3.1 114 128-241 16-153 (241)
194 cd04171 SelB SelB subfamily. 98.9 5.3E-09 1.1E-13 82.9 8.5 84 141-236 2-88 (164)
195 PRK09602 translation-associate 98.9 2.9E-09 6.2E-14 97.8 7.9 88 141-234 3-114 (396)
196 PRK13631 cbiO cobalt transport 98.9 6.7E-10 1.4E-14 99.4 3.6 114 128-241 41-185 (320)
197 PRK10619 histidine/lysine/argi 98.9 6.8E-10 1.5E-14 96.0 3.5 115 128-242 20-162 (257)
198 PRK10771 thiQ thiamine transpo 98.9 6.9E-10 1.5E-14 94.5 3.5 111 131-241 17-138 (232)
199 TIGR01189 ccmA heme ABC export 98.9 3.8E-10 8.1E-15 93.9 1.7 110 128-241 15-136 (198)
200 COG1137 YhbG ABC-type (unclass 98.9 8.8E-11 1.9E-15 97.0 -2.3 115 127-241 18-148 (243)
201 PRK13546 teichoic acids export 98.9 6.8E-10 1.5E-14 96.7 3.1 112 127-241 38-152 (264)
202 PRK13538 cytochrome c biogenes 98.9 4.5E-10 9.7E-15 93.9 1.9 111 128-241 16-138 (204)
203 PF00005 ABC_tran: ABC transpo 98.9 2E-10 4.4E-15 89.4 -0.3 102 130-241 2-117 (137)
204 PRK10261 glutathione transport 98.9 6E-10 1.3E-14 107.9 2.8 114 128-241 31-177 (623)
205 PRK10762 D-ribose transporter 98.9 8E-10 1.7E-14 104.4 3.4 114 128-241 19-150 (501)
206 PRK09536 btuD corrinoid ABC tr 98.9 6.7E-10 1.4E-14 102.1 2.6 114 128-241 18-148 (402)
207 cd01897 NOG NOG1 is a nucleola 98.9 1E-08 2.2E-13 82.0 9.2 92 141-236 2-93 (168)
208 PRK00454 engB GTP-binding prot 98.9 1.2E-08 2.6E-13 83.8 9.9 96 138-236 23-120 (196)
209 cd03224 ABC_TM1139_LivF_branch 98.9 4.9E-10 1.1E-14 94.5 1.5 112 128-241 15-141 (222)
210 PRK11247 ssuB aliphatic sulfon 98.9 7.3E-10 1.6E-14 96.1 2.6 108 128-241 27-142 (257)
211 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.9 5.1E-10 1.1E-14 95.0 1.6 113 127-241 36-151 (224)
212 TIGR02982 heterocyst_DevA ABC 98.9 6E-10 1.3E-14 94.1 2.0 114 128-241 20-150 (220)
213 COG1134 TagH ABC-type polysacc 98.9 6.1E-10 1.3E-14 94.6 2.0 107 127-236 41-151 (249)
214 PRK15112 antimicrobial peptide 98.9 8.4E-10 1.8E-14 96.1 2.9 114 128-241 28-158 (267)
215 PRK13545 tagH teichoic acids e 98.9 8.7E-10 1.9E-14 103.8 3.0 114 128-241 39-152 (549)
216 PRK11308 dppF dipeptide transp 98.9 9.5E-10 2.1E-14 98.6 3.0 115 128-242 30-164 (327)
217 COG1123 ATPase components of v 98.9 1.2E-09 2.6E-14 102.5 3.8 116 127-242 305-439 (539)
218 TIGR03411 urea_trans_UrtD urea 98.9 1E-09 2.2E-14 93.9 3.0 114 128-241 17-152 (242)
219 COG3596 Predicted GTPase [Gene 98.9 3.9E-09 8.5E-14 91.0 6.5 98 133-235 33-130 (296)
220 TIGR00993 3a0901s04IAP86 chlor 98.9 1.5E-08 3.2E-13 97.1 10.9 95 136-232 115-211 (763)
221 TIGR03269 met_CoM_red_A2 methy 98.9 9.3E-10 2E-14 104.4 2.9 114 128-241 15-177 (520)
222 PRK14247 phosphate ABC transpo 98.9 1.7E-09 3.7E-14 93.0 4.1 114 128-241 18-155 (250)
223 TIGR00968 3a0106s01 sulfate AB 98.9 1.1E-09 2.3E-14 93.8 2.8 114 128-241 15-139 (237)
224 cd03257 ABC_NikE_OppD_transpor 98.9 1.2E-09 2.6E-14 92.4 3.0 114 128-241 20-154 (228)
225 TIGR02142 modC_ABC molybdenum 98.9 1.4E-09 3E-14 98.6 3.3 109 131-241 15-140 (354)
226 PRK10261 glutathione transport 98.9 1.1E-09 2.5E-14 106.0 2.9 115 128-242 339-473 (623)
227 PRK13549 xylose transporter AT 98.9 1.6E-09 3.6E-14 102.4 3.9 114 128-241 20-152 (506)
228 PRK10575 iron-hydroxamate tran 98.8 1.3E-09 2.8E-14 94.8 2.8 114 128-241 26-156 (265)
229 PRK15056 manganese/iron transp 98.8 2.3E-09 4.9E-14 93.6 4.3 114 128-241 22-151 (272)
230 cd03231 ABC_CcmA_heme_exporter 98.8 1.3E-09 2.7E-14 91.0 2.3 108 128-241 15-134 (201)
231 TIGR03740 galliderm_ABC gallid 98.8 1E-09 2.3E-14 92.8 1.8 110 128-241 15-133 (223)
232 PRK09700 D-allose transporter 98.8 1.8E-09 4E-14 102.1 3.6 114 128-241 20-154 (510)
233 TIGR03873 F420-0_ABC_ATP propo 98.8 1.5E-09 3.3E-14 93.8 2.8 114 128-241 16-146 (256)
234 PRK11231 fecE iron-dicitrate t 98.8 1.3E-09 2.8E-14 94.2 2.3 114 128-241 17-147 (255)
235 cd03297 ABC_ModC_molybdenum_tr 98.8 2E-09 4.3E-14 90.5 3.4 108 131-241 16-140 (214)
236 PRK13539 cytochrome c biogenes 98.8 8.8E-10 1.9E-14 92.4 1.2 110 128-241 17-136 (207)
237 PRK10253 iron-enterobactin tra 98.8 1.8E-09 3.9E-14 93.9 3.1 115 128-242 22-153 (265)
238 COG0536 Obg Predicted GTPase [ 98.8 4.2E-09 9.1E-14 93.2 5.4 97 133-235 153-250 (369)
239 KOG0410 Predicted GTP binding 98.8 3.5E-08 7.7E-13 86.8 11.1 96 135-236 174-271 (410)
240 PRK03695 vitamin B12-transport 98.8 1.9E-09 4.1E-14 92.9 3.1 112 128-241 11-135 (248)
241 PRK11288 araG L-arabinose tran 98.8 2E-09 4.3E-14 101.7 3.5 114 128-241 19-149 (501)
242 PRK13543 cytochrome c biogenes 98.8 1.4E-09 3E-14 91.7 2.1 111 128-241 26-146 (214)
243 PRK14267 phosphate ABC transpo 98.8 2.1E-09 4.5E-14 92.7 3.1 114 128-241 19-158 (253)
244 PRK10744 pstB phosphate transp 98.8 2.4E-09 5.2E-14 92.8 3.5 114 128-241 28-165 (260)
245 PRK14268 phosphate ABC transpo 98.8 2.2E-09 4.7E-14 93.0 3.2 114 128-241 27-163 (258)
246 cd01879 FeoB Ferrous iron tran 98.8 1.2E-08 2.5E-13 80.6 7.1 87 144-235 1-87 (158)
247 PRK14241 phosphate transporter 98.8 2E-09 4.4E-14 93.1 2.8 115 128-242 19-158 (258)
248 PRK11022 dppD dipeptide transp 98.8 2.1E-09 4.5E-14 96.4 3.0 114 128-241 22-162 (326)
249 TIGR01978 sufC FeS assembly AT 98.8 2.3E-09 5E-14 91.6 3.1 114 128-241 15-153 (243)
250 PRK11144 modC molybdate transp 98.8 1.9E-09 4.2E-14 97.6 2.8 106 131-242 16-138 (352)
251 PRK04213 GTP-binding protein; 98.8 2.3E-08 5.1E-13 82.8 8.9 90 139-234 9-102 (201)
252 PRK10982 galactose/methyl gala 98.8 2.7E-09 5.9E-14 100.5 3.7 114 128-241 13-143 (491)
253 PRK10247 putative ABC transpor 98.8 2.2E-09 4.8E-14 91.1 2.7 112 128-241 22-146 (225)
254 TIGR02323 CP_lyasePhnK phospho 98.8 2.8E-09 6E-14 91.9 3.2 113 129-241 19-157 (253)
255 PRK15439 autoinducer 2 ABC tra 98.8 3.2E-09 7E-14 100.5 4.0 110 128-241 26-149 (510)
256 PRK11701 phnK phosphonate C-P 98.8 3.2E-09 6.8E-14 91.9 3.5 114 128-241 21-160 (258)
257 cd04166 CysN_ATPS CysN_ATPS su 98.8 8.3E-09 1.8E-13 86.5 6.0 85 141-237 1-115 (208)
258 TIGR03771 anch_rpt_ABC anchore 98.8 3.8E-09 8.2E-14 89.6 3.9 107 135-241 2-122 (223)
259 PRK14273 phosphate ABC transpo 98.8 3.1E-09 6.7E-14 91.7 3.3 114 128-241 22-159 (254)
260 TIGR02868 CydC thiol reductant 98.8 1.8E-09 3.8E-14 102.6 1.9 108 129-242 351-480 (529)
261 COG4619 ABC-type uncharacteriz 98.8 8.7E-10 1.9E-14 89.0 -0.3 113 127-241 17-142 (223)
262 PRK13540 cytochrome c biogenes 98.8 1.7E-09 3.7E-14 90.1 1.3 109 128-241 16-136 (200)
263 PRK13547 hmuV hemin importer A 98.8 3.7E-09 8E-14 92.5 3.1 114 128-241 16-154 (272)
264 PRK09473 oppD oligopeptide tra 98.8 3.3E-09 7.2E-14 95.2 2.8 114 128-241 31-170 (330)
265 PRK09544 znuC high-affinity zi 98.8 2.7E-09 5.8E-14 92.3 2.0 110 128-241 19-129 (251)
266 PRK10418 nikD nickel transport 98.8 5.1E-09 1.1E-13 90.5 3.7 112 128-241 18-149 (254)
267 PRK14250 phosphate ABC transpo 98.8 3.9E-09 8.3E-14 90.5 2.9 110 128-241 18-140 (241)
268 TIGR03269 met_CoM_red_A2 methy 98.8 3.3E-09 7.1E-14 100.7 2.6 114 128-242 299-437 (520)
269 PRK15177 Vi polysaccharide exp 98.8 2.2E-09 4.8E-14 90.5 1.2 41 129-169 3-43 (213)
270 PRK14269 phosphate ABC transpo 98.8 5.4E-09 1.2E-13 89.8 3.6 114 128-241 17-151 (246)
271 TIGR01257 rim_protein retinal- 98.8 3E-09 6.4E-14 113.4 2.4 116 127-242 1953-2080(2272)
272 COG0012 Predicted GTPase, prob 98.8 1E-08 2.2E-13 92.0 5.3 90 139-234 2-109 (372)
273 PRK14235 phosphate transporter 98.8 3.9E-09 8.4E-14 91.9 2.7 114 128-241 34-172 (267)
274 PRK10762 D-ribose transporter 98.8 4.4E-09 9.6E-14 99.4 3.2 113 129-241 268-404 (501)
275 PRK15134 microcin C ABC transp 98.8 4.6E-09 1E-13 99.9 3.4 113 128-241 301-434 (529)
276 PRK14242 phosphate transporter 98.7 4.7E-09 1E-13 90.4 3.0 114 128-241 21-158 (253)
277 PLN03211 ABC transporter G-25; 98.7 6E-09 1.3E-13 101.5 4.0 115 127-241 82-215 (659)
278 TIGR01257 rim_protein retinal- 98.7 3.9E-09 8.5E-14 112.5 2.9 115 128-242 945-1071(2272)
279 PRK11300 livG leucine/isoleuci 98.7 3.7E-09 8.1E-14 91.1 2.3 115 128-242 20-163 (255)
280 COG4167 SapF ABC-type antimicr 98.7 8.6E-09 1.9E-13 84.4 4.2 114 127-242 27-159 (267)
281 PRK10419 nikE nickel transport 98.7 5.3E-09 1.1E-13 91.2 3.2 114 128-241 27-160 (268)
282 TIGR03410 urea_trans_UrtE urea 98.7 2.8E-09 6.1E-14 90.5 1.4 111 128-241 15-140 (230)
283 PRK09700 D-allose transporter 98.7 8.6E-09 1.9E-13 97.6 4.8 114 128-241 278-418 (510)
284 PRK09984 phosphonate/organopho 98.7 5E-09 1.1E-13 90.8 2.8 114 128-241 19-161 (262)
285 COG4586 ABC-type uncharacteriz 98.7 4.9E-09 1.1E-13 90.4 2.6 115 125-240 36-164 (325)
286 TIGR02633 xylG D-xylose ABC tr 98.7 5.9E-09 1.3E-13 98.4 3.3 114 128-241 16-150 (500)
287 PRK14270 phosphate ABC transpo 98.7 6.6E-09 1.4E-13 89.5 3.3 114 128-241 19-156 (251)
288 PRK10938 putative molybdenum t 98.7 7.8E-09 1.7E-13 97.4 4.1 113 128-241 18-144 (490)
289 PRK14246 phosphate ABC transpo 98.7 7.9E-09 1.7E-13 89.5 3.8 114 128-241 25-162 (257)
290 COG4555 NatA ABC-type Na+ tran 98.7 3.1E-09 6.7E-14 88.0 1.0 115 127-241 16-142 (245)
291 cd00880 Era_like Era (E. coli 98.7 4.3E-08 9.4E-13 76.0 7.5 90 144-238 1-91 (163)
292 PRK11819 putative ABC transpor 98.7 5.4E-09 1.2E-13 100.0 2.7 111 128-241 339-454 (556)
293 PRK14259 phosphate ABC transpo 98.7 7.2E-09 1.6E-13 90.4 3.2 113 128-241 28-163 (269)
294 cd03234 ABCG_White The White s 98.7 6.5E-09 1.4E-13 88.1 2.8 114 128-241 22-152 (226)
295 PRK14254 phosphate ABC transpo 98.7 6.8E-09 1.5E-13 91.3 2.8 112 129-241 55-189 (285)
296 PRK13549 xylose transporter AT 98.7 8.2E-09 1.8E-13 97.6 3.5 114 128-241 277-414 (506)
297 TIGR00955 3a01204 The Eye Pigm 98.7 9E-09 1.9E-13 99.7 3.8 115 127-241 39-175 (617)
298 TIGR02633 xylG D-xylose ABC tr 98.7 8.6E-09 1.9E-13 97.3 3.6 114 128-241 275-412 (500)
299 PRK15134 microcin C ABC transp 98.7 7.2E-09 1.6E-13 98.6 3.1 114 128-241 24-165 (529)
300 cd01876 YihA_EngB The YihA (En 98.7 8.7E-08 1.9E-12 75.6 8.8 91 142-235 2-94 (170)
301 PRK15439 autoinducer 2 ABC tra 98.7 1.1E-08 2.4E-13 96.9 4.2 113 129-241 279-412 (510)
302 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 6.3E-08 1.4E-12 77.2 8.0 84 141-237 2-88 (168)
303 PRK11614 livF leucine/isoleuci 98.7 4.3E-09 9.4E-14 89.8 1.1 112 128-241 20-146 (237)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 8E-09 1.7E-13 98.8 3.1 110 129-241 338-452 (552)
305 PRK11288 araG L-arabinose tran 98.7 9.3E-09 2E-13 97.2 3.3 114 128-241 268-405 (501)
306 PRK13541 cytochrome c biogenes 98.7 6.1E-09 1.3E-13 86.4 1.7 106 131-241 18-132 (195)
307 PRK14275 phosphate ABC transpo 98.7 7.5E-09 1.6E-13 91.1 2.3 113 129-241 55-191 (286)
308 cd01861 Rab6 Rab6 subfamily. 98.7 1.1E-07 2.3E-12 75.4 8.7 83 141-236 2-86 (161)
309 PRK15064 ABC transporter ATP-b 98.7 8.6E-09 1.9E-13 98.0 2.8 113 128-241 16-164 (530)
310 PRK14274 phosphate ABC transpo 98.7 9.7E-09 2.1E-13 88.9 2.8 114 128-241 27-164 (259)
311 PRK15064 ABC transporter ATP-b 98.7 8.5E-09 1.8E-13 98.1 2.6 107 129-241 335-447 (530)
312 KOG0061 Transporter, ABC super 98.7 1.4E-08 3.1E-13 98.1 4.1 115 127-241 44-179 (613)
313 COG4148 ModC ABC-type molybdat 98.7 3.4E-08 7.4E-13 85.6 6.0 105 132-242 17-138 (352)
314 PRK14256 phosphate ABC transpo 98.7 1.3E-08 2.8E-13 87.7 3.4 114 128-241 19-157 (252)
315 PF00350 Dynamin_N: Dynamin fa 98.7 1.1E-07 2.5E-12 76.2 8.6 45 187-239 101-145 (168)
316 cd03248 ABCC_TAP TAP, the Tran 98.7 6.1E-09 1.3E-13 88.2 1.2 112 128-241 29-159 (226)
317 PRK14237 phosphate transporter 98.7 1.3E-08 2.8E-13 88.6 3.2 114 128-241 35-172 (267)
318 PRK14251 phosphate ABC transpo 98.7 1.2E-08 2.5E-13 87.9 2.9 114 128-241 19-156 (251)
319 PF05049 IIGP: Interferon-indu 98.7 1.5E-07 3.3E-12 85.4 10.1 90 137-236 33-126 (376)
320 cd01889 SelB_euk SelB subfamil 98.7 6.2E-08 1.3E-12 79.9 7.0 85 141-237 2-106 (192)
321 PRK10636 putative ABC transpor 98.7 1.4E-08 3.1E-13 98.7 3.6 110 129-241 328-439 (638)
322 PRK14240 phosphate transporter 98.7 1.6E-08 3.4E-13 87.0 3.4 114 128-241 18-155 (250)
323 TIGR00956 3a01205 Pleiotropic 98.7 1.7E-08 3.7E-13 105.5 4.3 116 127-242 777-911 (1394)
324 cd03237 ABC_RNaseL_inhibitor_d 98.7 1.3E-08 2.8E-13 87.8 2.8 103 133-241 19-124 (246)
325 cd04160 Arfrp1 Arfrp1 subfamil 98.7 8.8E-08 1.9E-12 76.4 7.5 82 142-235 2-86 (167)
326 PRK11160 cysteine/glutathione 98.6 9.3E-09 2E-13 98.7 2.1 108 129-242 356-485 (574)
327 PRK15093 antimicrobial peptide 98.6 1.1E-08 2.4E-13 91.9 2.4 114 128-241 22-167 (330)
328 PRK14272 phosphate ABC transpo 98.6 1.8E-08 3.9E-13 86.7 3.6 114 128-241 19-157 (252)
329 COG4136 ABC-type uncharacteriz 98.6 3.9E-08 8.4E-13 78.2 5.1 112 129-241 18-143 (213)
330 PRK11819 putative ABC transpor 98.6 1.4E-08 3E-13 97.3 3.0 112 128-241 22-172 (556)
331 PRK14258 phosphate ABC transpo 98.6 2.3E-08 4.9E-13 86.8 4.0 114 128-241 22-159 (261)
332 COG0410 LivF ABC-type branched 98.6 8.7E-09 1.9E-13 86.9 1.4 112 128-240 18-144 (237)
333 PRK14257 phosphate ABC transpo 98.6 1.8E-08 3.8E-13 90.5 3.4 115 128-242 97-235 (329)
334 PLN03073 ABC transporter F fam 98.6 1.7E-08 3.7E-13 99.1 3.6 110 129-241 525-636 (718)
335 cd00881 GTP_translation_factor 98.6 7E-08 1.5E-12 78.2 6.7 84 142-237 2-100 (189)
336 PRK11147 ABC transporter ATPas 98.6 1.3E-08 2.8E-13 98.9 2.6 110 129-241 335-449 (635)
337 cd03251 ABCC_MsbA MsbA is an e 98.6 1.5E-08 3.2E-13 86.2 2.6 41 128-168 17-57 (234)
338 PRK14249 phosphate ABC transpo 98.6 2.1E-08 4.6E-13 86.3 3.6 114 128-241 19-156 (251)
339 PRK15467 ethanolamine utilizat 98.6 1.1E-07 2.3E-12 76.4 7.5 77 141-237 3-79 (158)
340 PRK14244 phosphate ABC transpo 98.6 1.5E-08 3.3E-13 87.2 2.7 114 128-241 20-158 (251)
341 cd03245 ABCC_bacteriocin_expor 98.6 1.2E-08 2.6E-13 85.9 2.0 41 128-168 19-59 (220)
342 PRK14271 phosphate ABC transpo 98.6 1.9E-08 4.2E-13 88.0 3.2 114 128-241 36-172 (276)
343 PRK10535 macrolide transporter 98.6 1.8E-08 3.8E-13 98.2 3.2 114 128-241 23-153 (648)
344 cd03244 ABCC_MRP_domain2 Domai 98.6 1.4E-08 3E-13 85.6 2.1 41 128-168 19-59 (221)
345 TIGR00092 GTP-binding protein 98.6 6.7E-08 1.4E-12 87.5 6.6 90 140-234 3-109 (368)
346 cd03214 ABC_Iron-Siderophores_ 98.6 5.7E-09 1.2E-13 85.6 -0.3 39 128-166 14-52 (180)
347 cd03250 ABCC_MRP_domain1 Domai 98.6 1.9E-08 4.1E-13 83.9 2.8 56 128-186 20-75 (204)
348 TIGR01187 potA spermidine/putr 98.6 1.5E-08 3.2E-13 90.8 2.2 99 144-242 1-110 (325)
349 COG1101 PhnK ABC-type uncharac 98.6 6.4E-09 1.4E-13 87.0 -0.2 116 127-242 20-158 (263)
350 PRK14248 phosphate ABC transpo 98.6 2E-08 4.3E-13 87.4 2.9 114 128-241 36-173 (268)
351 PRK14239 phosphate transporter 98.6 2.2E-08 4.8E-13 86.1 3.1 114 128-241 20-157 (252)
352 PRK14261 phosphate ABC transpo 98.6 2.9E-08 6.4E-13 85.5 3.8 114 128-241 21-158 (253)
353 PRK13409 putative ATPase RIL; 98.6 1.6E-08 3.6E-13 97.3 2.4 105 129-241 355-462 (590)
354 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 2.7E-08 5.8E-13 95.2 3.8 68 128-196 20-90 (552)
355 COG4608 AppF ABC-type oligopep 98.6 3.1E-08 6.7E-13 85.5 3.8 91 127-241 27-118 (268)
356 COG4161 ArtP ABC-type arginine 98.6 1.2E-08 2.6E-13 82.1 1.0 115 127-241 16-150 (242)
357 TIGR02857 CydD thiol reductant 98.6 1.7E-08 3.6E-13 95.9 2.1 107 129-241 338-467 (529)
358 PRK14262 phosphate ABC transpo 98.6 2.7E-08 5.8E-13 85.6 3.2 114 128-241 18-155 (250)
359 COG1132 MdlB ABC-type multidru 98.6 2.1E-08 4.6E-13 96.1 2.8 111 128-242 344-475 (567)
360 COG3845 ABC-type uncharacteriz 98.6 7.4E-08 1.6E-12 88.9 6.1 112 129-240 20-149 (501)
361 cd03252 ABCC_Hemolysin The ABC 98.6 1E-08 2.2E-13 87.4 0.4 41 128-168 17-57 (237)
362 PRK10982 galactose/methyl gala 98.6 3.6E-08 7.8E-13 92.9 4.1 114 128-241 263-400 (491)
363 COG4988 CydD ABC-type transpor 98.6 2.8E-08 6.1E-13 93.4 3.2 96 127-228 335-442 (559)
364 TIGR00958 3a01208 Conjugate Tr 98.6 1.6E-08 3.4E-13 99.5 1.6 109 128-242 496-627 (711)
365 TIGR03797 NHPM_micro_ABC2 NHPM 98.6 1.7E-08 3.8E-13 98.7 1.9 107 128-241 468-597 (686)
366 cd01884 EF_Tu EF-Tu subfamily. 98.6 1.6E-07 3.4E-12 78.3 7.4 88 139-238 2-104 (195)
367 COG1123 ATPase components of v 98.6 3.9E-08 8.4E-13 92.5 4.1 114 128-241 24-163 (539)
368 cd04104 p47_IIGP_like p47 (47- 98.6 2.2E-07 4.9E-12 77.2 8.3 59 140-199 2-64 (197)
369 PRK14245 phosphate ABC transpo 98.6 2.8E-08 6E-13 85.5 2.9 114 128-241 18-155 (250)
370 PRK14238 phosphate transporter 98.6 2.4E-08 5.2E-13 87.2 2.4 114 128-241 39-176 (271)
371 cd01851 GBP Guanylate-binding 98.6 2.3E-07 5E-12 78.9 8.4 90 139-232 7-101 (224)
372 PRK14236 phosphate transporter 98.6 3.9E-08 8.5E-13 85.8 3.7 113 129-241 41-177 (272)
373 PRK14263 phosphate ABC transpo 98.6 3.3E-08 7.2E-13 85.8 3.3 113 128-241 23-158 (261)
374 cd03254 ABCC_Glucan_exporter_l 98.6 2.3E-08 4.9E-13 84.8 2.1 41 128-168 18-58 (229)
375 COG0488 Uup ATPase components 98.6 3.3E-08 7.2E-13 93.7 3.4 109 130-241 339-448 (530)
376 PRK14253 phosphate ABC transpo 98.6 3.5E-08 7.7E-13 84.8 3.3 114 128-241 18-154 (249)
377 PRK11174 cysteine/glutathione 98.6 3.2E-08 7E-13 95.1 3.4 108 128-242 365-495 (588)
378 cd04155 Arl3 Arl3 subfamily. 98.6 3.6E-07 7.8E-12 73.4 8.9 82 137-234 12-93 (173)
379 TIGR03796 NHPM_micro_ABC1 NHPM 98.6 1.9E-08 4E-13 98.9 1.6 109 128-242 494-625 (710)
380 PRK10636 putative ABC transpor 98.6 3.7E-08 8.1E-13 95.8 3.6 113 128-241 16-158 (638)
381 PRK11176 lipid transporter ATP 98.6 2.1E-08 4.5E-13 96.3 1.8 109 129-242 359-490 (582)
382 PRK13657 cyclic beta-1,2-gluca 98.6 2E-08 4.3E-13 96.6 1.7 69 129-197 351-431 (588)
383 PRK14260 phosphate ABC transpo 98.6 3.5E-08 7.5E-13 85.5 2.9 114 128-241 22-159 (259)
384 cd00154 Rab Rab family. Rab G 98.6 2.7E-07 5.9E-12 71.9 7.8 82 141-235 2-85 (159)
385 COG2274 SunT ABC-type bacterio 98.6 1.4E-08 3.1E-13 99.1 0.5 73 128-200 488-572 (709)
386 PRK10790 putative multidrug tr 98.6 1.8E-08 3.9E-13 97.0 1.2 108 128-242 356-486 (592)
387 TIGR00231 small_GTP small GTP- 98.6 1.9E-07 4.2E-12 72.3 6.8 57 140-197 2-60 (161)
388 PRK10938 putative molybdenum t 98.5 3.1E-08 6.8E-13 93.3 2.4 114 128-241 275-410 (490)
389 PRK14243 phosphate transporter 98.5 3.8E-08 8.3E-13 85.5 2.7 36 128-163 25-60 (264)
390 cd03238 ABC_UvrA The excision 98.5 7.8E-08 1.7E-12 78.9 4.4 34 128-161 10-43 (176)
391 TIGR03375 type_I_sec_LssB type 98.5 2.2E-08 4.7E-13 98.2 1.1 107 129-241 481-610 (694)
392 TIGR02203 MsbA_lipidA lipid A 98.5 2.4E-08 5.2E-13 95.5 1.3 109 129-242 348-479 (571)
393 COG1129 MglA ABC-type sugar tr 98.5 6.7E-08 1.5E-12 90.3 4.2 115 127-241 22-154 (500)
394 smart00178 SAR Sar1p-like memb 98.5 5.3E-07 1.2E-11 73.9 9.1 83 137-235 15-97 (184)
395 TIGR00954 3a01203 Peroxysomal 98.5 2.8E-08 6E-13 97.0 1.7 113 128-241 467-591 (659)
396 COG0444 DppD ABC-type dipeptid 98.5 7E-08 1.5E-12 85.1 4.0 114 128-241 20-162 (316)
397 cd03253 ABCC_ATM1_transporter 98.5 3.6E-08 7.7E-13 84.0 2.0 41 128-168 16-56 (236)
398 cd04159 Arl10_like Arl10-like 98.5 5.4E-07 1.2E-11 70.3 8.5 78 142-234 2-79 (159)
399 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 2.3E-08 5.1E-13 85.3 0.7 41 128-168 18-58 (238)
400 cd01866 Rab2 Rab2 subfamily. 98.5 3.1E-07 6.6E-12 73.9 7.2 84 140-236 5-90 (168)
401 PRK14266 phosphate ABC transpo 98.5 5.1E-08 1.1E-12 83.8 2.8 115 128-242 18-156 (250)
402 cd03236 ABC_RNaseL_inhibitor_d 98.5 9.6E-08 2.1E-12 82.8 4.4 108 128-241 16-148 (255)
403 cd01863 Rab18 Rab18 subfamily. 98.5 3.6E-07 7.9E-12 72.4 7.4 84 141-236 2-86 (161)
404 PRK14255 phosphate ABC transpo 98.5 6.7E-08 1.4E-12 83.2 3.3 114 128-241 20-157 (252)
405 PRK14265 phosphate ABC transpo 98.5 5.9E-08 1.3E-12 84.9 2.9 37 128-164 35-71 (274)
406 KOG0057 Mitochondrial Fe/S clu 98.5 4.1E-08 8.9E-13 91.6 2.0 107 128-241 367-496 (591)
407 cd00879 Sar1 Sar1 subfamily. 98.5 8.8E-07 1.9E-11 72.5 9.7 82 138-235 18-99 (190)
408 KOG1490 GTP-binding protein CR 98.5 1.5E-07 3.2E-12 87.0 5.5 100 136-239 165-264 (620)
409 cd03289 ABCC_CFTR2 The CFTR su 98.5 2.9E-08 6.3E-13 87.0 0.9 107 128-242 19-148 (275)
410 cd03290 ABCC_SUR1_N The SUR do 98.5 5.2E-08 1.1E-12 82.1 2.3 41 128-168 16-56 (218)
411 PRK14252 phosphate ABC transpo 98.5 6.2E-08 1.3E-12 84.2 2.9 37 128-164 31-67 (265)
412 TIGR00437 feoB ferrous iron tr 98.5 3.5E-07 7.7E-12 88.1 8.3 85 146-235 1-85 (591)
413 TIGR02528 EutP ethanolamine ut 98.5 5.2E-07 1.1E-11 70.3 7.8 77 141-238 2-78 (142)
414 cd01891 TypA_BipA TypA (tyrosi 98.5 3.8E-07 8.3E-12 75.3 7.4 85 140-236 3-102 (194)
415 cd01886 EF-G Elongation factor 98.5 3.1E-07 6.7E-12 80.3 7.1 85 142-238 2-103 (270)
416 PRK09580 sufC cysteine desulfu 98.5 1.3E-07 2.8E-12 81.1 4.6 36 128-163 16-51 (248)
417 CHL00131 ycf16 sulfate ABC tra 98.5 1.1E-07 2.3E-12 81.8 4.0 35 128-162 22-56 (252)
418 TIGR02204 MsbA_rel ABC transpo 98.5 4.3E-08 9.4E-13 93.9 1.7 108 128-241 355-485 (576)
419 cd01860 Rab5_related Rab5-rela 98.5 5.1E-07 1.1E-11 71.6 7.6 82 140-235 2-86 (163)
420 cd04157 Arl6 Arl6 subfamily. 98.5 6.3E-07 1.4E-11 70.9 8.0 79 142-236 2-82 (162)
421 smart00175 RAB Rab subfamily o 98.5 9.4E-07 2E-11 70.0 9.0 83 141-236 2-86 (164)
422 PLN03140 ABC transporter G fam 98.5 7.7E-08 1.7E-12 100.8 3.3 115 127-241 894-1028(1470)
423 PF00009 GTP_EFTU: Elongation 98.5 4.2E-07 9E-12 74.8 7.1 88 139-238 3-109 (188)
424 cd04119 RJL RJL (RabJ-Like) su 98.5 1.2E-06 2.7E-11 69.3 9.3 82 141-235 2-85 (168)
425 COG4133 CcmA ABC-type transpor 98.5 4.5E-08 9.8E-13 80.3 0.9 111 128-241 17-139 (209)
426 COG1119 ModF ABC-type molybden 98.5 1.6E-07 3.5E-12 80.0 4.2 111 128-241 46-180 (257)
427 cd03291 ABCC_CFTR1 The CFTR su 98.5 7.5E-08 1.6E-12 84.7 2.3 55 128-185 52-106 (282)
428 cd04154 Arl2 Arl2 subfamily. 98.5 1.2E-06 2.5E-11 70.8 9.0 81 139-235 14-94 (173)
429 cd04142 RRP22 RRP22 subfamily. 98.4 8E-07 1.7E-11 74.0 8.2 91 141-236 2-94 (198)
430 PRK10789 putative multidrug tr 98.4 7.4E-08 1.6E-12 92.4 2.2 41 128-168 330-370 (569)
431 PLN03118 Rab family protein; P 98.4 6.4E-07 1.4E-11 75.0 7.6 58 138-197 13-72 (211)
432 PRK12317 elongation factor 1-a 98.4 3.7E-07 7.9E-12 84.7 6.5 86 137-234 4-119 (425)
433 cd04156 ARLTS1 ARLTS1 subfamil 98.4 8E-07 1.7E-11 70.3 7.7 79 142-236 2-81 (160)
434 PLN03140 ABC transporter G fam 98.4 2.1E-07 4.5E-12 97.7 5.4 118 125-242 177-346 (1470)
435 PRK10522 multidrug transporter 98.4 1.3E-07 2.8E-12 90.4 3.5 104 128-241 338-458 (547)
436 CHL00071 tufA elongation facto 98.4 5.2E-07 1.1E-11 83.4 7.4 90 137-238 10-114 (409)
437 cd04145 M_R_Ras_like M-Ras/R-R 98.4 6.4E-07 1.4E-11 71.0 7.0 83 140-236 3-87 (164)
438 COG4598 HisP ABC-type histidin 98.4 1.5E-07 3.2E-12 77.1 3.2 114 125-241 18-161 (256)
439 cd01864 Rab19 Rab19 subfamily. 98.4 1.1E-06 2.4E-11 70.1 8.4 84 140-236 4-89 (165)
440 cd04113 Rab4 Rab4 subfamily. 98.4 7.8E-07 1.7E-11 70.6 7.4 84 141-237 2-87 (161)
441 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 1.6E-06 3.4E-11 69.2 9.2 83 140-235 3-87 (166)
442 PRK14264 phosphate ABC transpo 98.4 1.2E-07 2.6E-12 84.2 3.0 36 129-164 61-96 (305)
443 TIGR01842 type_I_sec_PrtD type 98.4 1.7E-07 3.7E-12 89.4 4.1 41 128-168 333-373 (544)
444 KOG0059 Lipid exporter ABCA1 a 98.4 1E-07 2.2E-12 95.9 2.6 115 128-242 580-708 (885)
445 KOG1491 Predicted GTP-binding 98.4 5.5E-07 1.2E-11 79.8 6.8 92 137-234 18-126 (391)
446 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.4 1.2E-06 2.6E-11 71.0 8.5 81 139-235 15-95 (174)
447 TIGR00956 3a01205 Pleiotropic 98.4 1.8E-07 3.9E-12 98.0 4.4 115 127-241 75-218 (1394)
448 cd04170 EF-G_bact Elongation f 98.4 6.7E-07 1.4E-11 77.9 7.3 84 142-237 2-102 (268)
449 cd00878 Arf_Arl Arf (ADP-ribos 98.4 1.1E-06 2.5E-11 69.4 8.0 78 142-235 2-79 (158)
450 cd01868 Rab11_like Rab11-like. 98.4 1.5E-06 3.3E-11 69.2 8.8 83 140-235 4-88 (165)
451 cd01890 LepA LepA subfamily. 98.4 4.3E-07 9.3E-12 73.4 5.7 85 141-237 2-105 (179)
452 COG0488 Uup ATPase components 98.4 1.5E-07 3.3E-12 89.3 3.2 58 128-186 18-75 (530)
453 COG4778 PhnL ABC-type phosphon 98.4 7.5E-08 1.6E-12 78.1 0.7 113 129-241 27-161 (235)
454 cd04161 Arl2l1_Arl13_like Arl2 98.4 1.6E-06 3.5E-11 69.9 8.5 78 142-235 2-79 (167)
455 PLN03130 ABC transporter C fam 98.4 1E-07 2.2E-12 100.9 1.9 108 128-242 1254-1384(1622)
456 cd01867 Rab8_Rab10_Rab13_like 98.4 1.2E-06 2.5E-11 70.4 7.6 85 140-237 4-90 (167)
457 TIGR01193 bacteriocin_ABC ABC- 98.4 1.1E-07 2.4E-12 93.4 1.9 69 129-197 490-570 (708)
458 cd03233 ABC_PDR_domain1 The pl 98.4 1.1E-07 2.3E-12 79.5 1.3 37 128-164 22-58 (202)
459 PRK11147 ABC transporter ATPas 98.4 2E-07 4.4E-12 90.6 3.3 42 128-169 18-59 (635)
460 cd01862 Rab7 Rab7 subfamily. 98.4 2.6E-06 5.6E-11 68.1 9.2 83 141-236 2-86 (172)
461 TIGR01846 type_I_sec_HlyB type 98.4 1E-07 2.2E-12 93.6 1.2 41 129-169 473-513 (694)
462 cd01865 Rab3 Rab3 subfamily. 98.4 1.6E-06 3.4E-11 69.5 7.9 82 141-235 3-86 (165)
463 smart00173 RAS Ras subfamily o 98.4 8.3E-07 1.8E-11 70.6 6.2 56 141-198 2-59 (164)
464 smart00053 DYNc Dynamin, GTPas 98.4 2.3E-06 5E-11 73.5 9.3 24 140-163 27-50 (240)
465 cd04112 Rab26 Rab26 subfamily. 98.4 2.4E-06 5.2E-11 70.4 9.1 82 141-235 2-86 (191)
466 cd04158 ARD1 ARD1 subfamily. 98.4 1.5E-06 3.3E-11 70.0 7.8 78 142-235 2-79 (169)
467 PLN03232 ABC transporter C fam 98.4 1.5E-07 3.2E-12 99.3 2.3 108 128-242 1251-1381(1495)
468 cd04114 Rab30 Rab30 subfamily. 98.4 2.6E-06 5.6E-11 68.0 9.1 84 139-235 7-92 (169)
469 TIGR00475 selB selenocysteine- 98.4 1.4E-06 3.1E-11 83.9 8.8 86 141-238 2-89 (581)
470 cd00876 Ras Ras family. The R 98.4 1.6E-06 3.6E-11 68.1 7.8 80 142-235 2-83 (160)
471 TIGR01192 chvA glucan exporter 98.4 1.6E-07 3.5E-12 90.4 2.3 40 129-168 351-390 (585)
472 PRK12735 elongation factor Tu; 98.4 1.3E-06 2.9E-11 80.4 8.2 91 136-238 9-114 (396)
473 cd03223 ABCD_peroxisomal_ALDP 98.4 3.7E-07 8E-12 73.9 3.9 57 128-185 16-72 (166)
474 TIGR01194 cyc_pep_trnsptr cycl 98.4 2E-07 4.3E-12 89.3 2.6 107 128-241 357-479 (555)
475 COG4987 CydC ABC-type transpor 98.3 8.4E-08 1.8E-12 89.4 -0.1 97 127-229 352-460 (573)
476 cd04138 H_N_K_Ras_like H-Ras/N 98.3 1.6E-06 3.4E-11 68.3 7.2 55 141-197 3-59 (162)
477 cd04168 TetM_like Tet(M)-like 98.3 8.8E-07 1.9E-11 76.0 6.1 84 142-237 2-102 (237)
478 cd01882 BMS1 Bms1. Bms1 is an 98.3 1.6E-06 3.5E-11 73.8 7.6 84 134-237 34-118 (225)
479 cd04151 Arl1 Arl1 subfamily. 98.3 2.2E-06 4.7E-11 68.0 7.9 77 142-235 2-79 (158)
480 cd04140 ARHI_like ARHI subfami 98.3 1.5E-06 3.2E-11 69.6 6.7 25 140-164 2-26 (165)
481 cd04139 RalA_RalB RalA/RalB su 98.3 2.1E-06 4.6E-11 67.8 7.5 55 141-197 2-58 (164)
482 PF10662 PduV-EutP: Ethanolami 98.3 1.8E-06 3.8E-11 68.3 6.9 77 140-237 2-78 (143)
483 TIGR00957 MRP_assoc_pro multi 98.3 2.4E-07 5.3E-12 97.9 2.6 108 128-242 1301-1431(1522)
484 cd01893 Miro1 Miro1 subfamily. 98.3 2.1E-06 4.5E-11 68.9 7.4 82 141-236 2-84 (166)
485 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 4.4E-07 9.5E-12 71.9 3.4 87 128-221 15-117 (144)
486 PTZ00243 ABC transporter; Prov 98.3 2.3E-07 4.9E-12 98.1 2.2 107 129-242 1326-1455(1560)
487 cd04123 Rab21 Rab21 subfamily. 98.3 3.4E-06 7.4E-11 66.4 8.5 83 141-236 2-86 (162)
488 cd04169 RF3 RF3 subfamily. Pe 98.3 1.9E-06 4.1E-11 75.2 7.4 86 140-237 3-109 (267)
489 cd04149 Arf6 Arf6 subfamily. 98.3 3.9E-06 8.5E-11 67.8 8.8 81 138-235 8-89 (168)
490 cd04146 RERG_RasL11_like RERG/ 98.3 8.8E-07 1.9E-11 70.7 4.9 82 142-236 2-85 (165)
491 cd03213 ABCG_EPDR ABCG transpo 98.3 2E-07 4.4E-12 77.3 1.1 41 128-168 24-66 (194)
492 TIGR00487 IF-2 translation ini 98.3 2.6E-06 5.7E-11 82.0 8.8 91 136-239 84-175 (587)
493 PRK13409 putative ATPase RIL; 98.3 3.8E-07 8.3E-12 87.9 3.0 107 128-241 89-221 (590)
494 PLN03232 ABC transporter C fam 98.3 2.9E-07 6.3E-12 97.1 2.3 105 129-242 633-750 (1495)
495 KOG0065 Pleiotropic drug resis 98.3 6.3E-07 1.4E-11 91.0 4.5 113 128-240 806-937 (1391)
496 cd04125 RabA_like RabA-like su 98.3 2.7E-06 5.9E-11 69.6 7.5 83 141-236 2-86 (188)
497 cd04124 RabL2 RabL2 subfamily. 98.3 2.8E-06 6.1E-11 67.8 7.4 84 141-236 2-86 (161)
498 PTZ00265 multidrug resistance 98.3 2E-07 4.4E-12 97.9 0.8 38 128-165 1183-1220(1466)
499 COG4107 PhnK ABC-type phosphon 98.3 1.2E-06 2.6E-11 71.5 5.0 115 127-241 20-160 (258)
500 TIGR01271 CFTR_protein cystic 98.3 3.2E-07 6.9E-12 96.8 2.1 107 128-242 1234-1363(1490)
No 1
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=7.3e-22 Score=172.02 Aligned_cols=166 Identities=13% Similarity=0.067 Sum_probs=119.9
Q ss_pred cchHHHHh--hhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCChh--HHHHHHHHcCCeEEEeec-ccc
Q 026174 22 LNPLFIHR--FYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEP--TWDEKYRERTDRIVFGEE-AQK 95 (242)
Q Consensus 22 ~~~~~~~~--~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~~~--~w~~~~~~~~~~v~~~s~-~~~ 95 (242)
.+-|.... +.+..|.++. .+ ++|+++.++..+|++++ .||+||++.+... ++...|++.||.++++++ .+.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~--~~-ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~ 153 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNT--NL-LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153 (301)
T ss_pred ccccceEEEEEeccCCCCCH--HH-HHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence 33344443 4455566666 88 99999999999999999 7999999887555 799999999999999998 444
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce---eecCCCC
Q 026174 96 GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTN 172 (242)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~---~~~~~~~ 172 (242)
+...+ ...+ . +.+.+++|+||||||||+|.|.+.... .++...+
T Consensus 154 ~~~~l------------------~~~l--------------~-~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~ 200 (301)
T COG1162 154 GLEEL------------------AELL--------------A-GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLG 200 (301)
T ss_pred cHHHH------------------HHHh--------------c-CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCC
Confidence 54444 2222 2 446779999999999999999884433 3444444
Q ss_pred cccceEEEE-EeeCCceeEEeeccccch-hccCCCHHHHHHHHHHHHHHcCcc
Q 026174 173 TTTHEVLGV-MTKADTQICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 173 ~t~~~~~~~-~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
.++|+++.. ++..+....++|||||.. ...+...+++...+.++.+..+.+
T Consensus 201 rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~C 253 (301)
T COG1162 201 RGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQC 253 (301)
T ss_pred CCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCC
Confidence 555544333 444445778999999963 344677888888887777776654
No 2
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.85 E-value=6e-22 Score=176.18 Aligned_cols=148 Identities=21% Similarity=0.243 Sum_probs=113.8
Q ss_pred CCCCCCCCCCCCCCCccCccC------------CCCCCCCCCChhHHHHHHHHcCCeEEEeecccccccchhhhHHHHHH
Q 026174 42 TENDCDSVFDSSYFRIPTIDD------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERK 109 (242)
Q Consensus 42 ~~~daR~p~~s~~~~i~~~~~------------NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~~~~~~~~l~~~~~~~~~ 109 (242)
+..|||+|+++|++..|+++. ||+||+|.+.+++|+.||++.++++.|+++++.+..+. .....
T Consensus 152 eVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~----~~~~~ 227 (435)
T KOG2484|consen 152 EVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNS----KNLQS 227 (435)
T ss_pred EeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccc----ccccc
Confidence 334999999999999998772 99999999999999999999999999999965443322 00111
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCcee
Q 026174 110 HRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI 189 (242)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 189 (242)
..++....+-..+.... ....++...++||+|.|||||||+||+|...+.+.+|..||.|+..+...+ +..+
T Consensus 228 s~c~gae~l~~~lgny~-----~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i 299 (435)
T KOG2484|consen 228 SVCFGAETLMKVLGNYC-----RKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKI 299 (435)
T ss_pred chhhhHHHHHHHhcCcc-----cccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCc
Confidence 13333333333333210 145678899999999999999999999999999999999999998765433 4688
Q ss_pred EEeeccccchhc
Q 026174 190 CIFDTPGLMLNK 201 (242)
Q Consensus 190 ~liDtpG~~~~~ 201 (242)
.++|+||+++..
T Consensus 300 ~llDsPgiv~~~ 311 (435)
T KOG2484|consen 300 RLLDSPGIVPPS 311 (435)
T ss_pred eeccCCceeecC
Confidence 999999998653
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=166.76 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=119.1
Q ss_pred chHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCccC--------CCCCCCCCCChhHHHHHHHHc-CCeEEEeec-
Q 026174 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDD--------PQNNNAAKKQEPTWDEKYRER-TDRIVFGEE- 92 (242)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~~--------NK~DL~~~~~~~~w~~~~~~~-~~~v~~~s~- 92 (242)
-..+.+.+.......+...++.|||+|.+|+++.++.++. ||+||+|+...++|.+++.+. +...+++++
T Consensus 21 ~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~ 100 (322)
T COG1161 21 MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAK 100 (322)
T ss_pred hHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEee
Confidence 4456666666666666666777999999999999999774 999999999999999999988 566777777
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC
Q 026174 93 AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN 172 (242)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~ 172 (242)
.+.+...+.+.. ....+..++... -....+...+++++|.||||||||||+|+|.....++..||
T Consensus 101 ~~~~~~~i~~~~----------~~~~~~~i~~~~-----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG 165 (322)
T COG1161 101 SRQGGKKIRKAL----------EKLSEEKIKRLK-----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG 165 (322)
T ss_pred cccCccchHHHH----------HHHHHHHHHHHh-----hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc
Confidence 444444441111 111111111100 02234556889999999999999999999999999999999
Q ss_pred cccceEEEEEeeCCceeEEeeccccchhccC
Q 026174 173 TTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (242)
Q Consensus 173 ~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 203 (242)
+|++.+.-.+ ...++++||||+.++...
T Consensus 166 ~Tk~~q~i~~---~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 166 TTKGIQWIKL---DDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred eecceEEEEc---CCCeEEecCCCcCCCCcc
Confidence 9998775332 356889999999876543
No 4
>PRK12288 GTPase RsgA; Reviewed
Probab=99.81 E-value=2.7e-20 Score=167.49 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=119.1
Q ss_pred CcchHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCC---ChhHHHHHHHHcCCeEEEeec-ccc
Q 026174 21 RLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQK 95 (242)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~---~~~~w~~~~~~~~~~v~~~s~-~~~ 95 (242)
.||||+++.|+...+.+.++..+ .+|+++.++...++.++ .||+||++.+ ....|.++|+..++.++++|+ ++.
T Consensus 116 ~iaANvD~vlIV~s~~p~~s~~~-Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 116 PIAANIDQIVIVSAVLPELSLNI-IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred eEEEEccEEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 37999999887776655554477 89999988888898888 6999998754 357899999999999999999 555
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC---C
Q 026174 96 GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---N 172 (242)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~---~ 172 (242)
+...+. ..+. +..++|+|+||||||||||+|++.....++..+ +
T Consensus 195 GideL~------------------~~L~---------------~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~ 241 (347)
T PRK12288 195 GLEELE------------------AALT---------------GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSG 241 (347)
T ss_pred CHHHHH------------------HHHh---------------hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCC
Confidence 555551 1111 224689999999999999999997666655443 3
Q ss_pred cccceEEEE-EeeCCceeEEeeccccc-hhccCCCHHHHHHHHHHHHHHcCcc
Q 026174 173 TTTHEVLGV-MTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 173 ~t~~~~~~~-~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
.++|++... ++..+....++||||+. +.+...+.+++...+.++.+..+-+
T Consensus 242 rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~C 294 (347)
T PRK12288 242 LGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTC 294 (347)
T ss_pred CCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCC
Confidence 334433222 33323345799999996 3444456667777666666655544
No 5
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=156.86 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=122.5
Q ss_pred chHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCccC--------CCCCCCCCCChhHHHHHHHHcCCeEEEeec-c
Q 026174 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTIDD--------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-A 93 (242)
Q Consensus 23 ~~~~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~~--------NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~ 93 (242)
-+.+++++....|..+...|.||||+|++|||+.++.++. ||+||+++.+.....++++.++....++.. .
T Consensus 33 makalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~ 112 (335)
T KOG2485|consen 33 MAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCN 112 (335)
T ss_pred HHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhh
Confidence 4568999999999999999999999999999999988662 999999988888999999877655433333 2
Q ss_pred ---cccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC-----Ccce
Q 026174 94 ---QKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG-----TKVA 165 (242)
Q Consensus 94 ---~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g-----~~~~ 165 (242)
.++...+ -..+....+++.......+....+.++|.||||||||||++.. .+..
T Consensus 113 ~~~~~~v~~l------------------~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a 174 (335)
T KOG2485|consen 113 KDCNKQVSPL------------------LKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAA 174 (335)
T ss_pred hhhhhccccH------------------HHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccce
Confidence 1223333 1112222233333455677889999999999999999999954 2455
Q ss_pred eecCCCCcccceEEEEEeeCCceeEEeeccccchhcc
Q 026174 166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (242)
Q Consensus 166 ~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 202 (242)
.+|..||.|++...-+.....+.++++||||+..+..
T Consensus 175 ~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 175 RVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred eccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 6889999999876655556667899999999987743
No 6
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.79 E-value=8.6e-20 Score=166.80 Aligned_cols=156 Identities=23% Similarity=0.294 Sum_probs=106.1
Q ss_pred CCCCCCCCCCCCccCccC------------CCCCCCCCCChhHHHHHHHHcCCeEEEeeccc---cccc-chh---hhHH
Q 026174 45 DCDSVFDSSYFRIPTIDD------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQ---KGKL-RIF---QEEE 105 (242)
Q Consensus 45 daR~p~~s~~~~i~~~~~------------NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~~~---~~~~-~l~---~~~~ 105 (242)
|||.|+-.+++.++..+. ||+||++++.+.+|..||+..+..++|.++.. .... .+. +..+
T Consensus 183 DARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d 262 (562)
T KOG1424|consen 183 DARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLD 262 (562)
T ss_pred ecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhccc
Confidence 999999999999988653 99999999999999999999999999999821 1111 110 0000
Q ss_pred HHHHHHH----HHHH-HHHHHHhhhhhhhhhhh--------------hhccCCcEEEEEcCCCCchhHHHHHHhCCccee
Q 026174 106 EERKHRA----LAKA-LLQAALERQEEEEEEVK--------------EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 106 ~~~~~~~----~~~~-~l~~~l~~~~~~l~~~~--------------~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
....... ..+. .+.... ...+++..+. ...+....||+||.|||||||+||+|+|.+...
T Consensus 263 ~~~~~~~~~~~~~~d~~i~r~~-~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVs 341 (562)
T KOG1424|consen 263 GVSRALGAIFVGEVDLKIARDK-GDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVS 341 (562)
T ss_pred chhhhccccccccchhhhhhhc-ccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceee
Confidence 0000000 0000 000000 0000111111 112334789999999999999999999999999
Q ss_pred ecCCCCcccceEEEEEeeCCceeEEeeccccchhccCC
Q 026174 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 167 ~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 204 (242)
++..||.|+|.++-++. ..+.|.|+||+++|.+..
T Consensus 342 VS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 342 VSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eecCCCCcceeEEEEcC---CCceecCCCCccccCCCc
Confidence 99999999998876554 678899999999886654
No 7
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.78 E-value=6.6e-19 Score=143.96 Aligned_cols=148 Identities=20% Similarity=0.283 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCCccCcc------------CCCCCCCCCCChhHHHHHHHHcCCeEEEeecccccccchhhhHHHHHHHH
Q 026174 44 NDCDSVFDSSYFRIPTID------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHR 111 (242)
Q Consensus 44 ~daR~p~~s~~~~i~~~~------------~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~~~~~~~~l~~~~~~~~~~~ 111 (242)
.|+|.|++++++.+..++ .||+||++++....|.++|++....+.|.+..+.....+.+..... .
T Consensus 7 vDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 83 (172)
T cd04178 7 LDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSVKV---E 83 (172)
T ss_pred EECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccccc---c
Confidence 389999999988887661 2999999999999999999999888888777443322221100000 0
Q ss_pred HHHHHHHHHHHhhhhhh----hhhh--hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC
Q 026174 112 ALAKALLQAALERQEEE----EEEV--KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA 185 (242)
Q Consensus 112 ~~~~~~l~~~l~~~~~~----l~~~--~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~ 185 (242)
.....++........+. +... .........++++|.||+|||||||+|.|.....++..|++|++.+...+
T Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--- 160 (172)
T cd04178 84 AASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--- 160 (172)
T ss_pred hhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---
Confidence 00001110000000000 0110 12234457899999999999999999999988889999999998765433
Q ss_pred CceeEEeecccc
Q 026174 186 DTQICIFDTPGL 197 (242)
Q Consensus 186 ~~~~~liDtpG~ 197 (242)
+..+.++||||+
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 256889999996
No 8
>PRK12289 GTPase RsgA; Reviewed
Probab=99.77 E-value=1.8e-19 Score=162.33 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=109.0
Q ss_pred chHHHHhhhhcC---CCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccc
Q 026174 23 NPLFIHRFYSAQ---PQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGK 97 (242)
Q Consensus 23 ~~~~~~~~~~~~---p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~ 97 (242)
++|+++.++... |.+++ .. ++|++..++...++.++ .||+||++.+..+.|.++|+..|+.++++|+ ++.+.
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~--~~-LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 87 VANADQILLVFALAEPPLDP--WQ-LSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhcCCEEEEEEECCCCCCCH--HH-HHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 678887655444 44433 44 68999888888898888 6999999877778999999999999999999 55555
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-----
Q 026174 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----- 172 (242)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----- 172 (242)
..|. ..+ . +..++|+|+||||||||||.|++.....++..++
T Consensus 164 ~eL~------------------~~L--------------~-~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rG 210 (352)
T PRK12289 164 EALL------------------EQL--------------R-NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRG 210 (352)
T ss_pred HHHh------------------hhh--------------c-cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCC
Confidence 5441 111 1 2347899999999999999999876555554443
Q ss_pred --cccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 173 --TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 173 --~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+|++.+ ++..+....++|||||..+....+..+....+.++-+
T Consensus 211 rHTT~~~~---l~~l~~g~~liDTPG~~~~~l~~~~~~l~~~F~e~~~ 255 (352)
T PRK12289 211 RHTTRHVE---LFELPNGGLLADTPGFNQPDLDCSPRELAHYFPEARQ 255 (352)
T ss_pred CCcCceeE---EEECCCCcEEEeCCCccccccccCHHHHHhhHHHHHH
Confidence 555443 3333334589999999765544455555544444433
No 9
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.77 E-value=2.5e-18 Score=151.38 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=109.4
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc--------CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-cccc
Q 026174 26 FIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID--------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKG 96 (242)
Q Consensus 26 ~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~--------~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~ 96 (242)
+++.+....-+-+....+.|+|.|++++++.++..+ .||+||++++..+.|.++|++.+..++++|+ .+.+
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 344444444455655566799999999998775533 3999998776678999999877778888888 5555
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccc
Q 026174 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176 (242)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~ 176 (242)
...+.+. ....+....... ........+..++++|.||||||||+|+|.+.....++..+++|++
T Consensus 94 i~~L~~~----------l~~~l~~~~~~~-----~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~ 158 (287)
T PRK09563 94 VKKILKA----------AKKLLKEKNERR-----KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA 158 (287)
T ss_pred HHHHHHH----------HHHHHHHHHhhh-----hhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE
Confidence 5555211 111111111100 0011234567899999999999999999999988889999999988
Q ss_pred eEEEEEeeCCceeEEeeccccchhc
Q 026174 177 EVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 177 ~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
.+...+ +..+.++||||+..+.
T Consensus 159 ~~~~~~---~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 159 QQWIKL---GKGLELLDTPGILWPK 180 (287)
T ss_pred EEEEEe---CCcEEEEECCCcCCCC
Confidence 654222 3568899999998664
No 10
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.76 E-value=3.1e-18 Score=149.96 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=107.8
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc--------CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-cccc
Q 026174 26 FIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID--------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKG 96 (242)
Q Consensus 26 ~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~--------~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~ 96 (242)
+++.+......-+....+.|+|.|++++++.+...+ .||+||++++....|.++|++.+..++++|+ .+.+
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 333444444455555566699999999998765433 3999998876678999999877778888888 5555
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccc
Q 026174 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH 176 (242)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~ 176 (242)
...+.+.. ...+....... ...........++++|.||||||||+|.|.+.....++..+++|+.
T Consensus 91 i~~L~~~i----------~~~~~~~~~~~-----~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~ 155 (276)
T TIGR03596 91 VKKIIKAA----------KKLLKEKNEKL-----KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG 155 (276)
T ss_pred HHHHHHHH----------HHHHHHhhhhh-----hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc
Confidence 55552111 11111110000 0011224567799999999999999999999888888999999988
Q ss_pred eEEEEEeeCCceeEEeeccccchhc
Q 026174 177 EVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 177 ~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
.+...+ +..+.++||||+..+.
T Consensus 156 ~~~~~~---~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 156 QQWIKL---SDGLELLDTPGILWPK 177 (276)
T ss_pred eEEEEe---CCCEEEEECCCcccCC
Confidence 654322 2467899999997654
No 11
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.75 E-value=7e-19 Score=156.52 Aligned_cols=132 Identities=24% Similarity=0.326 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCCccCccC------------CCCCCCCCCChhHHHHHHHHcCCeEEEeec-cc-ccccchhhhHHHHHHH
Q 026174 45 DCDSVFDSSYFRIPTIDD------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQ-KGKLRIFQEEEEERKH 110 (242)
Q Consensus 45 daR~p~~s~~~~i~~~~~------------NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~-~~~~~l~~~~~~~~~~ 110 (242)
|||+|+++|+..++..+. ||+||+|.+..+.|++.+....|++.|-++ ++ =|...+
T Consensus 222 DARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgal---------- 291 (572)
T KOG2423|consen 222 DARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGAL---------- 291 (572)
T ss_pred eccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHH----------
Confidence 999999999999998663 999999999999999999999999999988 32 233333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeE
Q 026174 111 RALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQIC 190 (242)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 190 (242)
..+.+++-.. ...+....||+||.||+||||+||.|...+++.+.+.+|.|+-.+ |+. .-..++
T Consensus 292 I~llRQf~kL-------------h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ--YIt-LmkrIf 355 (572)
T KOG2423|consen 292 IQLLRQFAKL-------------HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ--YIT-LMKRIF 355 (572)
T ss_pred HHHHHHHHhh-------------ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH--HHH-HHhcee
Confidence 1111111111 123567789999999999999999999999999999999997543 221 125789
Q ss_pred Eeeccccchhcc
Q 026174 191 IFDTPGLMLNKS 202 (242)
Q Consensus 191 liDtpG~~~~~~ 202 (242)
|||+||+..+..
T Consensus 356 LIDcPGvVyps~ 367 (572)
T KOG2423|consen 356 LIDCPGVVYPSS 367 (572)
T ss_pred EecCCCccCCCC
Confidence 999999987654
No 12
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.72 E-value=1.3e-17 Score=134.01 Aligned_cols=115 Identities=26% Similarity=0.303 Sum_probs=78.0
Q ss_pred ccCcc-CCCCCCCCCCChhHHHHHHHHcCCe-EEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 026174 57 IPTID-DPQNNNAAKKQEPTWDEKYRERTDR-IVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVK 133 (242)
Q Consensus 57 i~~~~-~NK~DL~~~~~~~~w~~~~~~~~~~-v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~ 133 (242)
.+.++ .||+||++++....|.++|++..+. ++..|+ .+.+...+.+ .+...++.
T Consensus 40 ~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~--------------~l~~~~~~--------- 96 (157)
T cd01858 40 KHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQ--------------LLRQFSKL--------- 96 (157)
T ss_pred CCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHH--------------HHHHHHhh---------
Confidence 34444 5999999887788999999876544 344555 3444444411 11111110
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeecccc
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
.....+..++++|+||||||||+|+|.+.....++..+++|++.+. + ..+..++++||||+
T Consensus 97 ~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~-~~~~~~~liDtPGi 157 (157)
T cd01858 97 HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--I-TLMKRIYLIDCPGV 157 (157)
T ss_pred hccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--E-EcCCCEEEEECcCC
Confidence 0012356788999999999999999999988889999999887543 2 22346789999996
No 13
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.72 E-value=6.3e-18 Score=145.62 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=109.6
Q ss_pred cchHHHHhh---hhcCCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCCh-hHHHHHHHHcCCeEEEeec-ccc
Q 026174 22 LNPLFIHRF---YSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQE-PTWDEKYRERTDRIVFGEE-AQK 95 (242)
Q Consensus 22 ~~~~~~~~~---~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~~-~~w~~~~~~~~~~v~~~s~-~~~ 95 (242)
.++|+++.+ ....|.++. +. ..|.....++..++.++ .||+||.+.... ..|.++|++.++.++++|+ ++.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~--~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSL--NQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred ccccCCEEEEEEECCCCCCCH--HH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 466766644 344577666 55 78888777778888877 699999875544 4899999999999999998 555
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC------
Q 026174 96 GKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------ 169 (242)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~------ 169 (242)
+..++. ..+ .+..++++|+||||||||||.|.+.....+++
T Consensus 110 gi~eLf------------------~~l---------------~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~ 156 (245)
T TIGR00157 110 GLKELI------------------EAL---------------QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLG 156 (245)
T ss_pred hHHHHH------------------hhh---------------cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCC
Confidence 544441 111 13467899999999999999999865544333
Q ss_pred -CCCcccceEEEEEeeCCceeEEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcc
Q 026174 170 -KTNTTTHEVLGVMTKADTQICIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 170 -~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
..++|++.+...+ ...+++||||+... ....+.+++...+.++.+..+.+
T Consensus 157 ~G~hTT~~~~l~~l----~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C 208 (245)
T TIGR00157 157 LGKHTTTHVELFHF----HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGEC 208 (245)
T ss_pred CCCCcCCceEEEEc----CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCC
Confidence 2345555443222 24589999999743 33456566666666655555433
No 14
>PRK00098 GTPase RsgA; Reviewed
Probab=99.70 E-value=6.4e-18 Score=149.52 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=112.0
Q ss_pred cchHHHHhhhhcCC-CCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCC-CChhHHHHHHHHcCCeEEEeec-ccccc
Q 026174 22 LNPLFIHRFYSAQP-QQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAK-KQEPTWDEKYRERTDRIVFGEE-AQKGK 97 (242)
Q Consensus 22 ~~~~~~~~~~~~~p-~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~-~~~~~w~~~~~~~~~~v~~~s~-~~~~~ 97 (242)
+|+|++..++.... ++...+.+ .+|++...+...++.++ .||+||++. +....|.++|++.++.++++|+ ++.+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~-idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDL-LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 57888886665443 23322255 68888877778888877 699999743 4566799999888999999998 54554
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC------
Q 026174 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------ 171 (242)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~------ 171 (242)
..+. . .+ .+..++++|+||||||||+|.|+|.....++..+
T Consensus 156 ~~L~------------------~--------------~l-~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G 202 (298)
T PRK00098 156 DELK------------------P--------------LL-AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRG 202 (298)
T ss_pred HHHH------------------h--------------hc-cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCC
Confidence 4440 1 11 2667899999999999999999997665555443
Q ss_pred -CcccceEEEEEeeCCceeEEeeccccc-hhccCCCHHHHHHHHHHHHHHcCcc
Q 026174 172 -NTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 172 -~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
++|++... ...+...+++||||+. ..+...+.+++...+.++.+..+-+
T Consensus 203 ~htT~~~~~---~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c 253 (298)
T PRK00098 203 KHTTTHVEL---YDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDC 253 (298)
T ss_pred CcccccEEE---EEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34443332 2223456899999996 3344456667766666665555543
No 15
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.70 E-value=3.2e-17 Score=129.45 Aligned_cols=98 Identities=29% Similarity=0.454 Sum_probs=77.6
Q ss_pred ccCcc-CCCCCCCCCCChhHHHHHHHHcCCeEEEeecccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 026174 57 IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEE 135 (242)
Q Consensus 57 i~~~~-~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~ 135 (242)
.+.++ .||+||++++....|.++|++.+..+++.|+.....
T Consensus 43 k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~-------------------------------------- 84 (141)
T cd01857 43 KKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA-------------------------------------- 84 (141)
T ss_pred CcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc--------------------------------------
Confidence 33444 499999987778899999999998888888842110
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchh
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
.++++|+||||||||+|.|.+.....++..+++|++.+...+ +..++++||||+.+|
T Consensus 85 -----~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~DtpG~~~p 141 (141)
T cd01857 85 -----TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---TPTITLCDCPGLVFP 141 (141)
T ss_pred -----EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe---CCCEEEEECCCcCCC
Confidence 468999999999999999999888778888888888654333 246799999999754
No 16
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.70 E-value=7.9e-17 Score=129.14 Aligned_cols=135 Identities=24% Similarity=0.255 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCcc----------Ccc-CCCCCCCCCCChhHHHHHHHHc-CCeEEEeec-ccccccchhhhHHHHHHHH
Q 026174 45 DCDSVFDSSYFRIP----------TID-DPQNNNAAKKQEPTWDEKYRER-TDRIVFGEE-AQKGKLRIFQEEEEERKHR 111 (242)
Q Consensus 45 daR~p~~s~~~~i~----------~~~-~NK~DL~~~~~~~~w~~~~~~~-~~~v~~~s~-~~~~~~~l~~~~~~~~~~~ 111 (242)
|+|.|.++++..+. .++ .||+||++++....|..+|++. +..++++|+ ++.+...+.+....
T Consensus 8 D~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~----- 82 (155)
T cd01849 8 DARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTK----- 82 (155)
T ss_pred eccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHH-----
Confidence 55555555544443 333 4999999877778898777654 556788888 56666666222110
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEE
Q 026174 112 ALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICI 191 (242)
Q Consensus 112 ~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l 191 (242)
......+. ... ......+.+++++|.||+|||||+|.|++.....++..+++|+......+ +..+++
T Consensus 83 -----~~~~~~~~---~~~--~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l 149 (155)
T cd01849 83 -----QTNSNLKS---YAK--DGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKL 149 (155)
T ss_pred -----HhHHHHHH---HHh--ccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEE
Confidence 00000000 000 11134678899999999999999999999887778888999988765433 256889
Q ss_pred eecccc
Q 026174 192 FDTPGL 197 (242)
Q Consensus 192 iDtpG~ 197 (242)
+||||+
T Consensus 150 iDtPG~ 155 (155)
T cd01849 150 LDTPGI 155 (155)
T ss_pred EECCCC
Confidence 999996
No 17
>PRK01889 GTPase RsgA; Reviewed
Probab=99.69 E-value=6.5e-18 Score=152.85 Aligned_cols=143 Identities=15% Similarity=0.075 Sum_probs=103.2
Q ss_pred CcchHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCC-ChhHHHHHHHHcCCeEEEeec-ccccc
Q 026174 21 RLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKK-QEPTWDEKYRERTDRIVFGEE-AQKGK 97 (242)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~-~~~~w~~~~~~~~~~v~~~s~-~~~~~ 97 (242)
.||+|+++.++...+.+.++..+ ++|+++.++..++++++ .||+||++.. ....|...+ ..+++++++|+ ++.+.
T Consensus 108 ~iaANvD~vliV~s~~p~~~~~~-ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 108 LIAANVDTVFIVCSLNHDFNLRR-IERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL 185 (356)
T ss_pred eEEEeCCEEEEEEecCCCCChhH-HHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence 46999999888777665554467 89999999999999988 6999998752 122344444 56889999998 55555
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC------
Q 026174 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------ 171 (242)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~------ 171 (242)
..| ...+.++.+++++|+||+|||||+|.|+|...+.++...
T Consensus 186 ~~L--------------------------------~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g 233 (356)
T PRK01889 186 DVL--------------------------------AAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKG 233 (356)
T ss_pred HHH--------------------------------HHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCC
Confidence 444 223445788999999999999999999997666554332
Q ss_pred -CcccceEEEEEeeCCceeEEeeccccchh
Q 026174 172 -NTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 172 -~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
++|.+....++.+ ...++||||+...
T Consensus 234 ~~tt~~~~l~~l~~---~~~l~DtpG~~~~ 260 (356)
T PRK01889 234 RHTTTHRELHPLPS---GGLLIDTPGMREL 260 (356)
T ss_pred cchhhhccEEEecC---CCeecCCCchhhh
Confidence 3444444444443 3478999999543
No 18
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.68 E-value=2.8e-17 Score=144.71 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=111.2
Q ss_pred CCcchHHHHhhhhcC---CCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-cc
Q 026174 20 PRLNPLFIHRFYSAQ---PQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQ 94 (242)
Q Consensus 20 ~~~~~~~~~~~~~~~---p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~ 94 (242)
-.+++|+++.++... |.+++ .. .+|++...+...++.++ .||+||+++.....|..+|.+.++.++++|+ .+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~--~~-ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNP--RL-LDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCH--HH-HHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 346888888666555 33233 44 68888877777888877 6999998775556788888888999999999 45
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----
Q 026174 95 KGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK---- 170 (242)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~---- 170 (242)
.+...+ .. .+. +..++++|+||||||||+|.|.|.....++..
T Consensus 150 ~gi~~L------------------~~--------------~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~ 196 (287)
T cd01854 150 EGLDEL------------------RE--------------YLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKL 196 (287)
T ss_pred ccHHHH------------------Hh--------------hhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccC
Confidence 444444 11 111 36789999999999999999999766554433
Q ss_pred ---CCcccceEEEEEeeCCceeEEeeccccchhc-cCCCHHHHHHHHHHHHHHcCcc
Q 026174 171 ---TNTTTHEVLGVMTKADTQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 171 ---~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
.++|+..+. ........++||||+.... ..++..+....+.++.+..+.+
T Consensus 197 ~~g~~tT~~~~~---~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C 250 (287)
T cd01854 197 GRGRHTTTHREL---FPLPGGGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQC 250 (287)
T ss_pred CCCCcccceEEE---EEcCCCCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCC
Confidence 234444332 2222345799999996432 4556666666666655554443
No 19
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.61 E-value=4.1e-15 Score=121.15 Aligned_cols=118 Identities=25% Similarity=0.421 Sum_probs=80.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+||++++....|.++|+..+..++++|+ .+.+...+... +...+....... .....+.+.
T Consensus 53 lNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~--------------l~~~l~~~~~~~--~~~~~~~~~ 116 (171)
T cd01856 53 LNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKA--------------AKKLLKDIEKLK--AKGLLPRGI 116 (171)
T ss_pred EehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHH--------------HHHHHHHHhhhh--hcccCCCCe
Confidence 5999998766667899999988888899998 44555555211 111111000000 011123456
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 198 (242)
.++++|.+|+|||||+|.|.+.....++..+++|++.+...+. ..+.++||||++
T Consensus 117 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 7899999999999999999998776778888888876543232 567899999974
No 20
>COG1159 Era GTPase [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=131.14 Aligned_cols=95 Identities=35% Similarity=0.516 Sum_probs=82.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+++|.||||||||+|.|+|.+...+++.+.|||+...|....++.++.++||||++.+.+.+ -+.....+..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l----~~~m~~~a~~ 81 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHAL----GELMNKAARS 81 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHH----HHHHHHHHHH
Confidence 456899999999999999999999999999999999999999888777899999999998774332 2345677888
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.++-.|++++|+|+..++.
T Consensus 82 sl~dvDlilfvvd~~~~~~ 100 (298)
T COG1159 82 ALKDVDLILFVVDADEGWG 100 (298)
T ss_pred HhccCcEEEEEEeccccCC
Confidence 8999999999999988664
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.5e-15 Score=138.49 Aligned_cols=98 Identities=27% Similarity=0.384 Sum_probs=84.7
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHHH
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRV 213 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~i 213 (242)
.+..|..++++|.||||||||+|+|++...+.+++.+||||+....++.-.+-.+.++||.|+... .+.+ +..+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet-----~d~VE~iGI 287 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET-----DDVVERIGI 287 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC-----ccHHHHHHH
Confidence 457899999999999999999999999999999999999999888887777778899999999632 2223 4578
Q ss_pred HHHHHHcCcccccceeeecCCccc
Q 026174 214 ESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
++.++.+.-+|++++|+|.+.++.
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~ 311 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLD 311 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCc
Confidence 899999999999999999998644
No 22
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.56 E-value=5.6e-15 Score=118.98 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=68.3
Q ss_pred hHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCch
Q 026174 74 PTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK 152 (242)
Q Consensus 74 ~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGK 152 (242)
+.|.+.|++.||+++++++ .+.+...+ .. .++ +.+++++|+|||||
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l------------------~~--------------~l~-~k~~vl~G~SGvGK 48 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEEL------------------KE--------------LLK-GKTSVLLGQSGVGK 48 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHH------------------HH--------------HHT-TSEEEEECSTTSSH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHH------------------HH--------------Hhc-CCEEEEECCCCCCH
Confidence 6899999999999999999 55555555 22 223 36788999999999
Q ss_pred hHHHHHHhCCcceee---c----CCCCcccceEEEEEeeCCceeEEeeccccch-hccCCCHHHHHHHHHHHHHHcC
Q 026174 153 SSIINYMVGTKVAAV---S----RKTNTTTHEVLGVMTKADTQICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 153 STLin~L~g~~~~~~---~----~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
|||+|.|.+.....+ + ...++|++... +..+....++|||||.. .....+..++...+.++.+..+
T Consensus 49 SSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l---~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~ 122 (161)
T PF03193_consen 49 SSLINALLPEAKQKTGEISEKTGRGKHTTTHREL---FPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAG 122 (161)
T ss_dssp HHHHHHHHTSS----S--------------SEEE---EEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTT
T ss_pred HHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE---EecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccC
Confidence 999999998643332 2 23345544443 33345678999999963 3333565665544444444333
No 23
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3e-15 Score=127.20 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=95.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC-----CCcccceEEEEEeeCCcee---EEeeccccc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-----TNTTTHEVLGVMTKADTQI---CIFDTPGLM 198 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~---~liDtpG~~ 198 (242)
..++++++.+.+|+.++++|+||||||||+|.|.|...+..|.. +........++++|++..+ +++|+..+.
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~ 96 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG 96 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheeh
Confidence 35677899999999999999999999999999999988876542 2223335678899876533 688999888
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
....+.+..+.++++.++++.+||.++....-..+||+++|.+
T Consensus 97 l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV 139 (248)
T COG1116 97 LELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV 139 (248)
T ss_pred hhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH
Confidence 7777777777778999999999999999999999999999976
No 24
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.51 E-value=7.7e-15 Score=130.81 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=98.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCC---ceeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKAD---TQICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~---~~~~liDtpG 196 (242)
.+++++..+..|+.++++|||||||||||+.|+|...++.|..... ...+.+++++|.. +++++.|+.+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 5677899999999999999999999999999999988765543221 1234578888864 6889999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
|.....+.+.+++++++.++.+.+++.+++......+||+++|.|+
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVA 143 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVA 143 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHH
Confidence 9999888999999999999999999999999999999999998763
No 25
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.50 E-value=6e-14 Score=115.94 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCh----hHHHHH--HHHcC---CeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 026174 62 DPQNNNAAKKQE----PTWDEK--YRERT---DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEE 131 (242)
Q Consensus 62 ~NK~DL~~~~~~----~~w~~~--~~~~~---~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~ 131 (242)
.||+||++++.. +.|.+. ++..+ ..++++|+ .+.+...+.+ .+..
T Consensus 68 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~--------------~l~~----------- 122 (190)
T cd01855 68 GNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELIN--------------AIKK----------- 122 (190)
T ss_pred EEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHH--------------HHHH-----------
Confidence 699999876542 345411 13333 25788888 5555555511 1111
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--------eeecCCCCcccceEEEEEeeCCceeEEeecccc
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
.++.+..++++|.||||||||||+|.+... ..++..+++|++.+...+. ..++++||||+
T Consensus 123 ---~l~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 123 ---LAKKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred ---HhhcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 112456788999999999999999998532 3467778988886654332 36789999996
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.48 E-value=3e-14 Score=116.43 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=100.6
Q ss_pred HHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------C---cccceEEEEEeeCCc
Q 026174 121 ALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------N---TTTHEVLGVMTKADT 187 (242)
Q Consensus 121 ~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~---~t~~~~~~~~~~~~~ 187 (242)
.+....+.++++++.+++|+.+-++|+||+|||||++.|.+...++.|... . --.+.++|+++|+..
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 334455678899999999999999999999999999999997766544221 1 112356888998764
Q ss_pred ---eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 188 ---QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 188 ---~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
..+++|+..+.....+.+..++++++.++++.+|+.+.....-+.+||+++|.++
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRva 147 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVA 147 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHH
Confidence 4578999999888889999999999999999999999999999999999999764
No 27
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.48 E-value=7.1e-14 Score=127.34 Aligned_cols=159 Identities=25% Similarity=0.282 Sum_probs=109.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+|-. .......+||.-.....+.+|+ ++.|..+|+.. +-..+. ..+... ........
T Consensus 119 vNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~--------------v~~~l~-~~e~~~--~~~~~~~i 179 (444)
T COG1160 119 VNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDA--------------VLELLP-PDEEEE--EEEETDPI 179 (444)
T ss_pred EEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCHHHHHHH--------------HHhhcC-Cccccc--ccccCCce
Confidence 4999975 3333445666655566777777 88888877211 111110 000000 00003568
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.||||||||+|+|+|.....+++.+|+|++.....+..++..+.++||.|+.....-.+. -..-.+...+...
T Consensus 180 kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~-~E~~Sv~rt~~aI 258 (444)
T COG1160 180 KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES-VEKYSVARTLKAI 258 (444)
T ss_pred EEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccc-eEEEeehhhHhHH
Confidence 899999999999999999999999999999999999776666666778899999999643221111 1123456677788
Q ss_pred CcccccceeeecCCcccccc
Q 026174 221 NLFEVLMVVFDVHRHLTRFV 240 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~~~ 240 (242)
..++.++.|+|++.|.+.|.
T Consensus 259 ~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 259 ERADVVLLVIDATEGISEQD 278 (444)
T ss_pred hhcCEEEEEEECCCCchHHH
Confidence 88999999999999988764
No 28
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.48 E-value=9.8e-14 Score=111.00 Aligned_cols=113 Identities=27% Similarity=0.357 Sum_probs=76.1
Q ss_pred ccCcc-CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 026174 57 IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKE 134 (242)
Q Consensus 57 i~~~~-~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~ 134 (242)
.+.++ .||+|+++.+....|..+++..+..++++|+ ++.+...+. ..+...+.
T Consensus 42 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~--------------~~l~~~~~----------- 96 (156)
T cd01859 42 KKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILR--------------RTIKELAK----------- 96 (156)
T ss_pred CcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHH--------------HHHHHHHh-----------
Confidence 33344 5999998765566777666666777888888 555555551 11111111
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeecccc
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
.......++++|.||+|||||+|.+.+.....++..+++|++.+. + ..+..+.++||||+
T Consensus 97 ~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~~~DtpGi 156 (156)
T cd01859 97 IDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--V-KITSKIYLLDTPGV 156 (156)
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--E-EcCCCEEEEECcCC
Confidence 112356678999999999999999998776667777777765432 2 22346889999996
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.47 E-value=1.8e-13 Score=109.86 Aligned_cols=89 Identities=26% Similarity=0.418 Sum_probs=65.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.|+++|.||||||||+|+|+|.+ ..++..||+|.....+.+...+..+.++|+||++.. ...+.++ ....+++. .
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl-~~~s~ee--~v~~~~l~-~ 76 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL-SSKSEEE--RVARDYLL-S 76 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS-SSSSHHH--HHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccC-CCCCcHH--HHHHHHHh-h
Confidence 58999999999999999999998 568999999999888888777788999999998642 3333222 22333333 4
Q ss_pred CcccccceeeecCC
Q 026174 221 NLFEVLMVVFDVHR 234 (242)
Q Consensus 221 ~l~d~ll~v~D~~~ 234 (242)
+-.|++++|+|++.
T Consensus 77 ~~~D~ii~VvDa~~ 90 (156)
T PF02421_consen 77 EKPDLIIVVVDATN 90 (156)
T ss_dssp TSSSEEEEEEEGGG
T ss_pred cCCCEEEEECCCCC
Confidence 56899999999976
No 30
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=5.3e-13 Score=101.43 Aligned_cols=92 Identities=29% Similarity=0.459 Sum_probs=70.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+|+++|++|+|||||+|.|++.....++..+++|+....+........+.++||||+..... .......+..+++.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~---~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES---QDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH---HHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch---hhHHHHHHHHHHHHH
Confidence 47899999999999999999977777888899998875554445556778999999864321 111113566788888
Q ss_pred CcccccceeeecCCc
Q 026174 221 NLFEVLMVVFDVHRH 235 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g 235 (242)
.-.|++++|+|...+
T Consensus 78 ~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 78 SKSDLIIYVVDASNP 92 (116)
T ss_dssp CTESEEEEEEETTSH
T ss_pred HHCCEEEEEEECCCC
Confidence 889999999997663
No 31
>PRK13796 GTPase YqeH; Provisional
Probab=99.44 E-value=2.9e-13 Score=122.95 Aligned_cols=123 Identities=21% Similarity=0.250 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCccCcc--------CCCCCCCCCC----ChhHHHHHHH-HcCC---eEEEeec-ccccccchhhhHHHH
Q 026174 45 DCDSVFDSSYFRIPTID--------DPQNNNAAKK----QEPTWDEKYR-ERTD---RIVFGEE-AQKGKLRIFQEEEEE 107 (242)
Q Consensus 45 daR~p~~s~~~~i~~~~--------~NK~DL~~~~----~~~~w~~~~~-~~~~---~v~~~s~-~~~~~~~l~~~~~~~ 107 (242)
|++....+..+.+..+. .||+||++++ ....|.+.+. ..|. .++++|+ .+.+..++.+
T Consensus 78 D~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~----- 152 (365)
T PRK13796 78 DIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLE----- 152 (365)
T ss_pred ECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHH-----
Confidence 55555555555554322 3999998754 2456866654 4454 5788888 4455544411
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC-----cceeecCCCCcccceEEEEE
Q 026174 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVM 182 (242)
Q Consensus 108 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~-----~~~~~~~~~~~t~~~~~~~~ 182 (242)
...+ ...+..+.+||.+|||||||||+|.+. ....++..||+|+......+
T Consensus 153 ------------~I~~------------~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l 208 (365)
T PRK13796 153 ------------AIEK------------YREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL 208 (365)
T ss_pred ------------HHHH------------hcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc
Confidence 1100 012457889999999999999999854 24457889999987654222
Q ss_pred eeCCceeEEeeccccch
Q 026174 183 TKADTQICIFDTPGLML 199 (242)
Q Consensus 183 ~~~~~~~~liDtpG~~~ 199 (242)
+....++||||+..
T Consensus 209 ---~~~~~l~DTPGi~~ 222 (365)
T PRK13796 209 ---DDGSFLYDTPGIIH 222 (365)
T ss_pred ---CCCcEEEECCCccc
Confidence 23458999999963
No 32
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=3.8e-14 Score=118.02 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=92.6
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCC---ceeEEe
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKAD---TQICIF 192 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~---~~~~li 192 (242)
+.+++++..+.+|..++++||||+||||||++|.++..++.|.....+ .+..+|+++|.. ++++++
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 457778999999999999999999999999999998877765432211 224577888765 356777
Q ss_pred eccccch-hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|+.-+.+ ...+++.++.++.+.++|+.+|+.|.....-+.+||+++|.|
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRV 145 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRV 145 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHH
Confidence 7765542 344678899999999999999999999999999999999876
No 33
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=7.7e-13 Score=120.65 Aligned_cols=95 Identities=27% Similarity=0.416 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~i~~~l~ 218 (242)
..|+|||.||||||||+|.|+|.+.+.+++.||+||++.-+...+.+..+.++||.|+.... .+.+ +....+++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD----EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC----chHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999998877766666779999999996431 1223 445667888
Q ss_pred HcCcccccceeeecCCcccc
Q 026174 219 AVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~~ 238 (242)
.+..+|++++|+|.-.|.+.
T Consensus 80 Ai~eADvilfvVD~~~Git~ 99 (444)
T COG1160 80 AIEEADVILFVVDGREGITP 99 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCH
Confidence 88999999999999888763
No 34
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.40 E-value=5.5e-13 Score=115.91 Aligned_cols=99 Identities=41% Similarity=0.634 Sum_probs=85.8
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
......++++|+||||||||.|.+.|.+...++...++|++...|.+.....++.++||||++......-..........
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 34566789999999999999999999999999999999999999998887779999999999877665544455566777
Q ss_pred HHHHcCcccccceeeecCC
Q 026174 216 AWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~ 234 (242)
.+..+..+|++.+++|++.
T Consensus 149 ~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASA 167 (379)
T ss_pred HHHHHhhCCEEEEEEeccC
Confidence 8889999999999999984
No 35
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.39 E-value=2.8e-13 Score=116.66 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=88.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCC---ceeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~---~~~~liDt 194 (242)
.++++++.+++|..++|+||||||||||+++|+|...+..|.. +.....+..++++|.. ..+++.|.
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~ 96 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYEL 96 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeeh
Confidence 4677899999999999999999999999999999877665432 2223345788998863 36688888
Q ss_pred cccc--hhcc--CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLM--LNKS--GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~--~~~~--~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+. +... ....++.++.+.++++.+++.++....++.+||++||.+
T Consensus 97 V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 97 VLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred HhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 7664 1111 122444456899999999999999999999999999976
No 36
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.39 E-value=1.5e-13 Score=123.23 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=93.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------cceEEEEEeeCC---ceeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------THEVLGVMTKAD---TQICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------~~~~~~~~~~~~---~~~~liDtpG 196 (242)
.+++++..+.+|+.++++|||||||||++++|+|...++.|.....+ ..+.+++++|+. +++++.|+.+
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVa 99 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA 99 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhh
Confidence 46778999999999999999999999999999999888755322111 123567788875 6889999999
Q ss_pred cchhccC-CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~-~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|...... ...+++++++.++++.+++.++.....+.+||+++|.+
T Consensus 100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRV 145 (352)
T COG3842 100 FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRV 145 (352)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHH
Confidence 9877444 34566889999999999999999999999999999876
No 37
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=2e-12 Score=113.55 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=75.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
+...++.+.|+||||||||+++|++.+. .+.+.|+||+...+|++...+..+.++||||+...... +..+++.++-.+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~-ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE-ERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChH-HhcHHHHHHHHH
Confidence 3667788999999999999999999765 58999999999999998877778999999999754322 122334444444
Q ss_pred HHHcCcccccceeeecCCccc
Q 026174 217 WSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+.. +.++++|++|.+..+-
T Consensus 244 L~h--l~~~IlF~~D~Se~cg 262 (346)
T COG1084 244 LRH--LAGVILFLFDPSETCG 262 (346)
T ss_pred HHH--hcCeEEEEEcCccccC
Confidence 444 4599999999987654
No 38
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.38 E-value=1.3e-12 Score=118.46 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCCCCCCCCCC----hhHHHH-HHHHcCC---eEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 026174 62 DPQNNNAAKKQ----EPTWDE-KYRERTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132 (242)
Q Consensus 62 ~NK~DL~~~~~----~~~w~~-~~~~~~~---~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~ 132 (242)
.||+||++++. ...|.+ ++++.+. .++++|+ .+.+..++.+. ..+
T Consensus 97 ~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~-----------------l~~--------- 150 (360)
T TIGR03597 97 GNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK-----------------IKK--------- 150 (360)
T ss_pred EEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHH-----------------HHH---------
Confidence 49999987642 456653 4555664 4788888 55555555111 100
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCc-----ceeecCCCCcccceEEEEEeeCCceeEEeeccccchh
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
...+..++++|.+|||||||||+|++.. ...++..|++|+......+ +....++||||+...
T Consensus 151 ---~~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 151 ---ARNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred ---HhCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 0124678999999999999999999853 3567888999987543222 245689999999754
No 39
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=2.3e-13 Score=115.08 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=86.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C------------cccceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N------------TTTHEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~------------~t~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|+.++|+||||+|||||+|.|.+...++.+... + ..|...+|+++|..+ .++
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~lt 99 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLT 99 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCC
Confidence 46678999999999999999999999999999998877644311 1 123456899988654 345
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccc-eeeecCCcccccccC
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTRFVIC 242 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll-~v~D~~~g~~~~~i~ 242 (242)
+.++..+.....+.+....+..+..+++.+|+.+... .....+||+++|.|+
T Consensus 100 v~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 100 VLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 6666655444444444466788899999999998777 778889999998763
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=5.6e-12 Score=116.83 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=74.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
.....++++|.+|+|||||+|+|++.....++..+++|+......+...+..+.++||||+..........+ .......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e-~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVE-KYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHH-HHHHHHH
Confidence 346789999999999999999999987767788889988765444444556788999999854322111111 1123455
Q ss_pred HHHcCcccccceeeecCCccccc
Q 026174 217 WSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
+..+..+|.+++|+|+..|.+.+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~ 272 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQ 272 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHH
Confidence 66777889999999999886654
No 41
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.36 E-value=3.5e-12 Score=111.25 Aligned_cols=93 Identities=31% Similarity=0.490 Sum_probs=70.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+++++|.||||||||+|+|+|.+...++..+++|+....+.....+..+.++||||+..... .-.+.....+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~----~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH----SLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc----hHHHHHHHHHHHHH
Confidence 57899999999999999999998877889999999876665544445788999999975421 11122344556667
Q ss_pred CcccccceeeecCCccc
Q 026174 221 NLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~ 237 (242)
.-+|++++|+|++.+..
T Consensus 78 ~~aDvvl~VvD~~~~~~ 94 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNG 94 (270)
T ss_pred hhCCEEEEEEECCCCCc
Confidence 78999999999987543
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=6.8e-12 Score=117.70 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=94.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+|+...+. .....+.......+.+|+ ++.+..+++... .+. +....+. ........
T Consensus 153 ~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i-------------~~~-l~~~~~~----~~~~~~~~ 212 (472)
T PRK03003 153 ANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLDAV-------------LAA-LPEVPRV----GSASGGPR 212 (472)
T ss_pred EECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHHHH-------------Hhh-ccccccc----ccccccce
Confidence 49999965321 223333322234567888 677777663221 111 1110000 00112357
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|||||||+|.|++.....++..+++|+......+...+..+.++||||+..........+. .........+
T Consensus 213 kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~-~~~~~~~~~i 291 (472)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEY-YASLRTHAAI 291 (472)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHH-HHHHHHHHHH
Confidence 899999999999999999999876567788899887654444445556789999998533221111111 1111223445
Q ss_pred CcccccceeeecCCccccc
Q 026174 221 NLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~~ 239 (242)
.-+|++++|+|++.+.+.+
T Consensus 292 ~~ad~vilV~Da~~~~s~~ 310 (472)
T PRK03003 292 EAAEVAVVLIDASEPISEQ 310 (472)
T ss_pred hcCCEEEEEEeCCCCCCHH
Confidence 6789999999998876543
No 43
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=4.2e-13 Score=117.06 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=96.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-------------CcccceEEEEEeeCCce---eEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------------NTTTHEVLGVMTKADTQ---ICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~---~~l 191 (242)
.+++++..++.|.++|++|+||+|||||++++.++..|+.|... ....+..+|+++|..+. .++
T Consensus 21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV 100 (339)
T COG1135 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTV 100 (339)
T ss_pred eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchH
Confidence 56778999999999999999999999999999998887755332 11233568889887653 468
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.++..+.....+++.++++.++.++++.+|++|.....-..+||++.|.|
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH
Confidence 88998888888899999999999999999999999998899999998876
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.36 E-value=7.1e-12 Score=115.83 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=98.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+|+...+.. ..++++-....++.+|+ ++.+...+... +...+..... .........
T Consensus 114 vNK~D~~~~~~~--~~~~~~lg~~~~~~vSa~~g~gv~~ll~~--------------i~~~l~~~~~----~~~~~~~~~ 173 (429)
T TIGR03594 114 ANKIDGKKEDAV--AAEFYSLGFGEPIPISAEHGRGIGDLLDA--------------ILELLPEEEE----EEEEEDGPI 173 (429)
T ss_pred EECccCCccccc--HHHHHhcCCCCeEEEeCCcCCChHHHHHH--------------HHHhcCcccc----cccccCCce
Confidence 499999765432 23334333346888888 66665555211 1111111000 001112346
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|+|||||+|.|++.....+++.+++|+......+...+..+.++||||+.......+..+ .....+.+..+
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e-~~~~~~~~~~~ 252 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVE-KYSVLRTLKAI 252 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHH-HHHHHHHHHHH
Confidence 78999999999999999999987666778888988765555544556788999999854322111111 12234556677
Q ss_pred CcccccceeeecCCccccc
Q 026174 221 NLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~~ 239 (242)
..+|++++|+|+..|.+.+
T Consensus 253 ~~ad~~ilV~D~~~~~~~~ 271 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQ 271 (429)
T ss_pred HhCCEEEEEEECCCCccHH
Confidence 8889999999999876654
No 45
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=3.8e-13 Score=115.46 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=85.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----cc--ceEEEEEeeCCc-----eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TT--HEVLGVMTKADT-----QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~--~~~~~~~~~~~~-----~~~liDtp 195 (242)
.++++++.+.+|..++|+||||+|||||+++|+|...+..|..... .. ...++|++|... .+++.|..
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 5778899999999999999999999999999999777765543211 12 246899988431 33455554
Q ss_pred ccc--h--hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLM--L--NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~--~--~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
... . .......+..++.+.++++.+|+.++.-..+..+||+++|.|
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence 432 1 111223344478999999999999999999999999999876
No 46
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.9e-12 Score=106.61 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=93.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-----ceEEEEEeeCCce---eEEeeccccch
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-----HEVLGVMTKADTQ---ICIFDTPGLML 199 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-----~~~~~~~~~~~~~---~~liDtpG~~~ 199 (242)
.+++++..+.+|..++++|+||||||||+|.+.|...+.-+......+ ....+.++|++.. ++++|+..|..
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL 99 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGL 99 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHH
Confidence 466789999999999999999999999999999987776443322222 2235667777643 37899999999
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.++.+-.+.+.+.+..+|+.+.--..+-.++|++||.+
T Consensus 100 ~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRv 141 (259)
T COG4525 100 QLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRV 141 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHH
Confidence 999999988889999999999999988888888999999875
No 47
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.32 E-value=9.2e-13 Score=122.42 Aligned_cols=99 Identities=28% Similarity=0.420 Sum_probs=75.0
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVR 212 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~ 212 (242)
..+..+..++++|+||||||||+|.|++.....++..+++|+......+...+..+.++||||+... .+.. ...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~-----~~~ie~~g 272 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH-----ADFVERLG 272 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc-----hhHHHHHH
Confidence 3456788999999999999999999999876667888999987665555555567789999998532 1111 123
Q ss_pred HHHHHHHcCcccccceeeecCCccc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+......+.-+|.+++|+|.+++.+
T Consensus 273 i~~~~~~~~~aD~il~V~D~s~~~s 297 (442)
T TIGR00450 273 IEKSFKAIKQADLVIYVLDASQPLT 297 (442)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCC
Confidence 4456667788999999999987654
No 48
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.31 E-value=1.2e-12 Score=122.07 Aligned_cols=97 Identities=25% Similarity=0.398 Sum_probs=74.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHH-HHH
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-VRV 213 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~i 213 (242)
....+.+++++|.+|+|||||+|.|++.....+++.+++|+......+...+..+.++||||+... ...++ ..+
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~-----~~~ie~~gi 285 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET-----DDEVEKIGI 285 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC-----ccHHHHHHH
Confidence 345678899999999999999999999876667888999988665555555567889999998521 12222 235
Q ss_pred HHHHHHcCcccccceeeecCCcc
Q 026174 214 ESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+..+.-+|++++|+|++++.
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~ 308 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPL 308 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCC
Confidence 56677888899999999998764
No 49
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=3.5e-12 Score=109.11 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=92.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----------CcccceEEEEEeeCCcee----EEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----------NTTTHEVLGVMTKADTQI----CIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~----~li 192 (242)
.++++++.+.+|..++++|+||+|||||++.|.|...+..+... ....+..+|+++|.+... ++.
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 35567899999999999999999999999999998877655432 112335688999876544 455
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
|-+.|...+.+.+.++++.++.++++.+++.++.......+||++.|.++
T Consensus 99 ~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva 148 (235)
T COG1122 99 DEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA 148 (235)
T ss_pred HHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH
Confidence 66677778888888899999999999999999888888888998888763
No 50
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=3.1e-11 Score=118.46 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=95.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+|+..... .-.++++.....++++|+ ++.+...+.... ++. +...... ... ..-....
T Consensus 390 ~NK~D~~~~~~--~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i-------------~~~-l~~~~~~-~~a-~~~~~~~ 451 (712)
T PRK09518 390 VNKIDDQASEY--DAAEFWKLGLGEPYPISAMHGRGVGDLLDEA-------------LDS-LKVAEKT-SGF-LTPSGLR 451 (712)
T ss_pred EECcccccchh--hHHHHHHcCCCCeEEEECCCCCCchHHHHHH-------------HHh-ccccccc-ccc-cCCCCCc
Confidence 49999965321 122333333334677888 777777663211 111 1110000 000 0012346
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|||||||+|.|++.....+++.+++|+......+...+..+.++||||+..........+. .........+
T Consensus 452 kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~-~~~~r~~~~i 530 (712)
T PRK09518 452 RVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEY-YSSLRTQAAI 530 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHH-HHHHHHHHHh
Confidence 889999999999999999999876567788899987655545455567789999998643322211111 1122234556
Q ss_pred CcccccceeeecCCccccc
Q 026174 221 NLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~~ 239 (242)
.-+|.+++|+|++.+.+.+
T Consensus 531 ~~advvilViDat~~~s~~ 549 (712)
T PRK09518 531 ERSELALFLFDASQPISEQ 549 (712)
T ss_pred hcCCEEEEEEECCCCCCHH
Confidence 7789999999999886543
No 51
>PRK00089 era GTPase Era; Reviewed
Probab=99.27 E-value=2.3e-11 Score=106.99 Aligned_cols=95 Identities=36% Similarity=0.595 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+++|.||||||||+|.|+|.....++..+.+|+....+.....+..+.++||||+..+.. ...+.....+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----~l~~~~~~~~~~ 80 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----ALNRAMNKAAWS 80 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----HHHHHHHHHHHH
Confidence 4568899999999999999999998887888888888877666554445788999999864321 111222345566
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..+|.+++++|+..+.+
T Consensus 81 ~~~~~D~il~vvd~~~~~~ 99 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIG 99 (292)
T ss_pred HHhcCCEEEEEEeCCCCCC
Confidence 7778899999999987543
No 52
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.27 E-value=1e-10 Score=105.86 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee-CCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....|+++|.+|||||||+|+|++.. ..+.+.+++|+......+.. .+..+.++||||+... .+.. ..+.+...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~---l~~~-lie~f~~t 262 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD---LPHE-LVAAFRAT 262 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc---CCHH-HHHHHHHH
Confidence 45789999999999999999999976 34667788888776665544 3457889999998532 2222 23446777
Q ss_pred HHHcCcccccceeeecCCccc
Q 026174 217 WSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~~ 237 (242)
++.+.-+|++++|+|++++..
T Consensus 263 le~~~~ADlil~VvD~s~~~~ 283 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDR 283 (351)
T ss_pred HHHHHhCCEEEEEEECCCCch
Confidence 888888999999999987643
No 53
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-11 Score=111.96 Aligned_cols=103 Identities=25% Similarity=0.352 Sum_probs=84.9
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~ 211 (242)
...++.|..++|+|+||||||||+|+|.......+++.+|+||+.....+...+..+.|.||.|+... ..+.. ..
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~----~~~~iE~~ 337 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE----SNDGIEAL 337 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc----cCChhHHH
Confidence 45567889999999999999999999999999999999999999877777766778899999999761 11122 35
Q ss_pred HHHHHHHHcCcccccceeeecCCccccc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
.++++-+...-+|++++|+|+..++..+
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~s 365 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTES 365 (531)
T ss_pred hHHHHHHHHhhcCEEEEEeccccccccc
Confidence 6788888889999999999996655543
No 54
>PRK15494 era GTPase Era; Provisional
Probab=99.25 E-value=2.4e-11 Score=109.42 Aligned_cols=93 Identities=34% Similarity=0.648 Sum_probs=71.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|||||||+|.|+|.....+++.+++|++...+.+...+..+.++||||+..+...+ .......++..+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l----~~~~~r~~~~~l 129 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSL----EKAMVRCAWSSL 129 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccH----HHHHHHHHHHHh
Confidence 8999999999999999999998877777888888877666666666688999999986432221 123344556667
Q ss_pred CcccccceeeecCCccc
Q 026174 221 NLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~ 237 (242)
.-+|++++|+|...+..
T Consensus 130 ~~aDvil~VvD~~~s~~ 146 (339)
T PRK15494 130 HSADLVLLIIDSLKSFD 146 (339)
T ss_pred hhCCEEEEEEECCCCCC
Confidence 78999999999876543
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.25 E-value=2.4e-12 Score=109.72 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=95.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC----------CCCcccceEEEEEeeC---CceeEEee
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----------KTNTTTHEVLGVMTKA---DTQICIFD 193 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~----------~~~~t~~~~~~~~~~~---~~~~~liD 193 (242)
..++++++.++.|..++++|+|||||||+++.|.++..++.|. .+....+..+||+.|. .+++++.+
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~e 94 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence 4577789999999999999999999999999999987766443 2333445677886664 35778999
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcc--cccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLF--EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~--d~ll~v~D~~~g~~~~~i 241 (242)
+..+.+.+.+.+.++++.+++++++.+++. ++.-..-+.+||+++|.|
T Consensus 95 NIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 95 NIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence 999999999999999999999999999996 477778888999999876
No 56
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=5.8e-12 Score=109.83 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=91.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----------CcccceEEEEEeeCC---ceeEEeec
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----------NTTTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----------~~t~~~~~~~~~~~~---~~~~liDt 194 (242)
+++++..++.|+.++++|+||+|||||+.+|+|...++.|... ...+...+|+++|+. .++++.|+
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~N 97 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN 97 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhh
Confidence 4467889999999999999999999999999999887755322 123446789999875 57899999
Q ss_pred cccchhccC--CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSG--YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~--~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..|...... .+..+++.++.++++.+++.++.-..--.++|+++|.|
T Consensus 98 IAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRV 146 (345)
T COG1118 98 IAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRV 146 (345)
T ss_pred hhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHH
Confidence 999765442 24567788999999999999988888888888888876
No 57
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.23 E-value=3.8e-12 Score=103.68 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=80.8
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----Cccc---ceEEEEEeeCCc---eeEEeeccccchhc
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----NTTT---HEVLGVMTKADT---QICIFDTPGLMLNK 201 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~~t~---~~~~~~~~~~~~---~~~liDtpG~~~~~ 201 (242)
+..++.+.+++|+|+||+|||||+|.|.|...+..|... .+.. .+-.++++|+.+ ++++..+.|+....
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 456789999999999999999999999998887755321 1111 122445667654 45677888775432
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-.-+.+.+++++.++.++|+.++.-..-..++|++||.+
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv 138 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH
Confidence 2222345578899999999999999999999999999876
No 58
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.5e-12 Score=107.09 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=86.8
Q ss_pred hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee-----cCC------------CCcccceEEEEEeeCCc
Q 026174 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-----SRK------------TNTTTHEVLGVMTKADT 187 (242)
Q Consensus 125 ~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~-----~~~------------~~~t~~~~~~~~~~~~~ 187 (242)
..+.+++++..++++...+++|||||||||||++|.++.-... |+. .....++.+|+++|.++
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3456778899999999999999999999999999977532211 111 11223456788888765
Q ss_pred --eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceee----ecCCcccccccC
Q 026174 188 --QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 188 --~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~----D~~~g~~~~~i~ 242 (242)
.+.+.|+..+....++...+++.+.++..+....|.|-+--.+ -.+||+++|.+|
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 4578999999988888766788888998888888765333222 337888888876
No 59
>PRK11058 GTPase HflX; Provisional
Probab=99.22 E-value=2.4e-10 Score=105.78 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..++++|.||||||||+|.|++.... +.+.+++|+......+...+ ..+.++||||+... .+... .+.+...++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~---lp~~l-ve~f~~tl~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH---LPHDL-VAAFKATLQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc---CCHHH-HHHHHHHHH
Confidence 57899999999999999999997765 66778888877665544333 36789999998432 22222 344667788
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
...-+|++++|+|++++.
T Consensus 273 ~~~~ADlIL~VvDaS~~~ 290 (426)
T PRK11058 273 ETRQATLLLHVVDAADVR 290 (426)
T ss_pred HhhcCCEEEEEEeCCCcc
Confidence 889999999999998764
No 60
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=4.9e-12 Score=114.59 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=87.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCC---ceeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKAD---TQICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~---~~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... .....+++++|.. +++++.|+..
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~ 98 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMA 98 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHH
Confidence 3567899999999999999999999999999999877665532111 1224578888764 2446677766
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+.....+.+..+...++.++++.+++.++.-...+.+||+++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRva 144 (356)
T PRK11650 99 YGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVA 144 (356)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHH
Confidence 5544344556666788999999999999888888999999998763
No 61
>COG2262 HflX GTPases [General function prediction only]
Probab=99.21 E-value=1.9e-10 Score=103.79 Aligned_cols=128 Identities=22% Similarity=0.264 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh--hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEE
Q 026174 105 EEERKHRALAKALLQAALERQEEE--EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM 182 (242)
Q Consensus 105 ~~~~~~~~~~~~~l~~~l~~~~~~--l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~ 182 (242)
+..+++....+..++..++..... ..--...-..-..|+++|++|+|||||+|+|++.... +.+..+.|..++...+
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~ 234 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEE
Confidence 444555555555555555542221 1111222345567999999999999999999987654 5566677777665554
Q ss_pred eeC-CceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 183 TKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 183 ~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.-. +..+.+-||.||+-.+ | ..+...++..|+.+.-+|++++|+|++++.-
T Consensus 235 ~l~~g~~vlLtDTVGFI~~L---P-~~LV~AFksTLEE~~~aDlllhVVDaSdp~~ 286 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDL---P-HPLVEAFKSTLEEVKEADLLLHVVDASDPEI 286 (411)
T ss_pred EeCCCceEEEecCccCcccC---C-hHHHHHHHHHHHHhhcCCEEEEEeecCChhH
Confidence 433 4567899999998543 3 3456789999999999999999999998743
No 62
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=5.1e-12 Score=106.59 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=85.7
Q ss_pred hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc---e
Q 026174 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT---Q 188 (242)
Q Consensus 125 ~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~---~ 188 (242)
....++++++.++.|+.|+++|+||+|||||+++|.|...+..|...+.+ .+..+|+++|..+ .
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 34457788999999999999999999999999999997665544322111 1356888887654 2
Q ss_pred eEEeeccccc--------hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 189 ICIFDTPGLM--------LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~--------~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.++.+.-.. ....++..++.+..+.++++.+|+.+......|.+||+++|.|
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 2333333221 2233445556678899999999999999999999999999876
No 63
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=1.3e-10 Score=100.45 Aligned_cols=99 Identities=25% Similarity=0.262 Sum_probs=65.6
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccC-CCHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~ 211 (242)
........+|+++|.+|||||||+|+|.|.....++.....|...+.......+..+.++||||+...... .....+..
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 34566788999999999999999999999877667766666666555444445567899999999754221 11222333
Q ss_pred HHHHHHHHcCcccccceeeec
Q 026174 212 RVESAWSAVNLFEVLMVVFDV 232 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~ 232 (242)
.+.++++..+ .+.++++...
T Consensus 105 ~I~~~l~~~~-idvIL~V~rl 124 (249)
T cd01853 105 SIKRYLKKKT-PDVVLYVDRL 124 (249)
T ss_pred HHHHHHhccC-CCEEEEEEcC
Confidence 3444444333 4567776544
No 64
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=7.5e-12 Score=113.19 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=86.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCC---ceeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKAD---TQICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~---~~~~liDtpG~ 197 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... .....+++++|+. +++++.|+..+
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~ 101 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY 101 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHH
Confidence 566789999999999999999999999999999887765532111 1124577787764 24566777766
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.....+.+..+..+++.++++.+++.++.......+||+++|+++
T Consensus 102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVa 146 (351)
T PRK11432 102 GLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVA 146 (351)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 544445566677789999999999998888778889999988763
No 65
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.20 E-value=9.5e-11 Score=97.30 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=62.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecC-CCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH-HHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES-AWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~-~l~ 218 (242)
+|+++|.+|+|||||+|.|+|.....++. .++.|+..+.+.....+..+.++||||+..... +.......+.. +..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHh
Confidence 57899999999999999999987654443 456666655544444556889999999975432 22333333333 333
Q ss_pred HcCcccccceeeecCC
Q 026174 219 AVNLFEVLMVVFDVHR 234 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~ 234 (242)
...-.+.+++|+|+..
T Consensus 80 ~~~g~~~illVi~~~~ 95 (196)
T cd01852 80 SAPGPHAFLLVVPLGR 95 (196)
T ss_pred cCCCCEEEEEEEECCC
Confidence 3455688999998765
No 66
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=4.6e-11 Score=109.43 Aligned_cols=93 Identities=29% Similarity=0.335 Sum_probs=71.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHHHHHHHH
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
+++--.-|+|||.||||||||||+|++.+. .++..|++|+....+++...+ ..+.++||||++.+.+. .. ...
T Consensus 155 elk~iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~---~Lg 228 (390)
T PRK12298 155 ELKLLADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GA---GLG 228 (390)
T ss_pred eeeccccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hh---hHH
Confidence 344445689999999999999999999764 789999999999998876654 35899999999754321 11 123
Q ss_pred HHHHHHcCcccccceeeecC
Q 026174 214 ESAWSAVNLFEVLMVVFDVH 233 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~ 233 (242)
..++..+.-++.+++|+|++
T Consensus 229 ~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 229 IRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred HHHHHHHHhCCEEEEEeccC
Confidence 34566777889999999976
No 67
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.18 E-value=4.4e-11 Score=104.50 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=68.5
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-----------------eeEEeeccccchhccCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKSGY 204 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~~~ 204 (242)
+|+||.||||||||+|+|++... .++..|++|+....+.+...+. .+.++|+||+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 48999999999999999999877 6888899999888777665432 4789999999843221
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
.+....+++..+.-+|.+++|+|...
T Consensus 79 ----~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 79 ----GEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred ----hhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 12334667888888999999999753
No 68
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.18 E-value=9.7e-12 Score=112.58 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=86.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG~ 197 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... .....+++++|... ++++.|+..+
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~ 99 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY 99 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHH
Confidence 566789999999999999999999999999999877664432111 11245778877642 4567777766
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.....+.+..+.+.++.++++.+++.++.......+||+++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRva 144 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVA 144 (353)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHH
Confidence 544344556677788999999999999888888889999998763
No 69
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.18 E-value=8.3e-11 Score=106.22 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-----------------eeEEeeccccchhcc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKS 202 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~ 202 (242)
..++|||.||||||||+|+|++.. ..++..|++|+....|.+...+. .+.++|+||+....+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 568999999999999999999987 56888999999888777654332 478999999975322
Q ss_pred CCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 203 ~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
..+....+++..+.-+|++++|+|...
T Consensus 82 -----~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 -----KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred -----hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 112345678888999999999999863
No 70
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.18 E-value=1e-11 Score=111.94 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=84.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----Ccc--------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----NTT--------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~~t--------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... ... .+..+++++|... ..++
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 46778999999999999999999999999999998777644321 111 1235788887643 2345
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+.+..+.++++.++++.+++.+........+||+++|.+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 55554433333455666778899999999999988888888999998876
No 71
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.17 E-value=9e-12 Score=113.06 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=86.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.....+ ++..+++++|... .++
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 46778999999999999999999999999999998877654221100 1345777777542 335
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+.|+..+.....+.+..+..+++.++++.+++.++.-.....+||+++|+++
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~ 139 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVG 139 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHH
Confidence 5666665544445566666788999999999998888888889999998764
No 72
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=1.1e-11 Score=108.62 Aligned_cols=114 Identities=10% Similarity=0.054 Sum_probs=95.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------ccceEEEEEeeCC---ceeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------TTHEVLGVMTKAD---TQIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------t~~~~~~~~~~~~---~~~~ 190 (242)
.+.+++++++.|++.+++|.||+|||||+.+|.+...++.|..... .|+..+++++|.. ++.+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4677899999999999999999999999999999877765433211 1234566677754 3558
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+.+|.....+.+.++.++++.++++.+||.++--...+.++|+++|.|
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRV 173 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRV 173 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHH
Confidence 999999999999999999999999999999999999999999999999876
No 73
>PTZ00258 GTP-binding protein; Provisional
Probab=99.16 E-value=8.4e-11 Score=107.22 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=72.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeeccccch
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLML 199 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~ 199 (242)
..+..++|||.||||||||+|+|++... .+++.|++|+....+.+...+ .++.++|+||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 5577899999999999999999988764 688899999988888766442 2478999999985
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecC
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~ 233 (242)
..+. .+....+++..+.-+|++++|+|..
T Consensus 98 ga~~-----g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASE-----GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcc-----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4321 1233457788888899999999985
No 74
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.16 E-value=1.3e-11 Score=112.55 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=86.0
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCC---ceeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKAD---TQICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~---~~~~liDtpG~ 197 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... .....+++++|.. +++++.|+..+
T Consensus 30 l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 109 (375)
T PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF 109 (375)
T ss_pred EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHH
Confidence 556789999999999999999999999999999877654422111 1124577888764 24567777766
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.....+.+..+...++.++++.+++.++.......++|+++|.++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVa 154 (375)
T PRK09452 110 GLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVA 154 (375)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 544334555666778899999999999888888999999998763
No 75
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.16 E-value=2e-11 Score=103.37 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=77.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCCc-ee----EE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKADT-QI----CI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~~-~~----~l 191 (242)
.++++++++.+|+++||+|+||+|||||.++|+|...+..|.....+ ....+.+++|++. .+ ++
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv 101 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhH
Confidence 56778999999999999999999999999999998877655432111 1233455666642 12 22
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCccc-ccceeeecCCcccccccC
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i~ 242 (242)
.+...-....++++. .++++.++++.+|+.. ++...-+.++|+++|.||
T Consensus 102 ~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 102 GRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred HHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH
Confidence 222221122233333 3445999999999965 777777889999999875
No 76
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.15 E-value=1.5e-11 Score=103.50 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=77.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .+...++++|... ..++
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 45678999999999999999999999999999998766544221110 1234667766532 1233
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+....+....+.++++.+++.+........+||+++|++
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 147 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRV 147 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 44433322222333444566788999999998877777778888888875
No 77
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.15 E-value=1.7e-11 Score=111.29 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=87.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee--cCCCCc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~--~~~~~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+..|..++|+|+||+|||||+++|+|...+.. |..... .....+++++|... .+++.++
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~en 99 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDN 99 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHH
Confidence 3566789999999999999999999999999999877655 432111 11235677777642 4466777
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
..+.....+.+..+...++.++++.+++.++.......+||+++|+++
T Consensus 100 l~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 100 VAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIA 147 (362)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHH
Confidence 766544445566677788999999999999888888999999998763
No 78
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.15 E-value=1.5e-11 Score=108.98 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|.+++|+|+||+|||||+++|+|...+..|...... ....+++++|... .+++.|..
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 87 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence 46678999999999999999999999999999998776654321111 1224677766432 22344444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+...++.++++.+++.+.....+..+||+++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 133 (302)
T TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRL 133 (302)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHH
Confidence 3322333444455567788999999998877777788888888876
No 79
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=1.8e-11 Score=103.30 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=76.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.|+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHH
Confidence 35678999999999999999999999999999998665544221 10 11124566666432 12333333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL 140 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH
Confidence 3222222334444566788999999998877777788888888875
No 80
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.14 E-value=2e-11 Score=108.49 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=83.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|.+++++|+||+|||||+++|+|...+..|... +. .....+++++|... .+++.|..
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l 101 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENL 101 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHH
Confidence 46678999999999999999999999999999998776544321 11 11245778876532 34556666
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.+.....+.+..+...++.++++.+++.+.....+..+|++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 102 LVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT 148 (306)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH
Confidence 55444444555566677889999999988777777888888888763
No 81
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=2e-11 Score=102.59 Aligned_cols=114 Identities=11% Similarity=0.177 Sum_probs=76.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.|...
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 94 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIA 94 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHH
Confidence 46678999999999999999999999999999998766544321 10 01124566666432 123344433
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.........+.++++.+++.+.....+..+||+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 139 (213)
T cd03259 95 FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRV 139 (213)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 322222233444456788899999998877776777888888875
No 82
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.7e-10 Score=95.28 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCH-HHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH-KDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~i~~ 215 (242)
...-|+++|.||||||||||+|++.+ .+.+|..||.|+..... .-...+.++|.||+.......+. +.....+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff---~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF---EVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE---EecCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34457899999999999999999966 57799999999865432 22245789999999764432211 122334455
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+++.=.--..+..++|..++.+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred HHhhchhheEEEEEEECCCCCc
Confidence 5543222346667788877654
No 83
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.13 E-value=2.6e-11 Score=107.13 Aligned_cols=115 Identities=12% Similarity=0.167 Sum_probs=84.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc---------ccceEEEEEeeCC---ceeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT---------TTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~---------t~~~~~~~~~~~~---~~~~liDt 194 (242)
..++++++.+++|..++++|+||+||||||++|+|...+..|..... .....++|+++.+ +.+++.|+
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~ 98 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN 98 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHH
Confidence 45778899999999999999999999999999999887765532211 1123567777654 35567777
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-+.....+.+.....+++.++++.+++.+..-..+...|++++|++
T Consensus 99 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl 145 (293)
T COG1131 99 LEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRL 145 (293)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHH
Confidence 77766666655455567899999999999855445666777777664
No 84
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.13 E-value=2.7e-11 Score=100.03 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=76.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc------------ccceEEEEEeeCCc-e---eEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT------------TTHEVLGVMTKADT-Q---ICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~------------t~~~~~~~~~~~~~-~---~~l 191 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... .....+++++|... . .++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence 4677899999999999999999999999999999876654422110 01123566666531 1 123
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.|+.-+.....+.+..+..+.+.++++.+++.+.....+..++++++|+++
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 137 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVA 137 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHH
Confidence 333322111123344455567888999999988777777778888888753
No 85
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.13 E-value=2.4e-11 Score=102.29 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=76.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc---------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT---------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t---------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... + .. .....++++|... ..+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 46678999999999999999999999999999998766544321 1 00 1234666666432 123
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+..+.....+.........+.++++.+++.+.....+..+||+++|++
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHH
Confidence 334333322222233334456788999999998777666777888888875
No 86
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.13 E-value=2.5e-11 Score=101.98 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=76.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... .....++++|... ..++
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV 96 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcH
Confidence 46678999999999999999999999999999998765544321100 1234566665432 1233
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+......+..+.++++.+++.+.....+..+||+++|++
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 146 (214)
T TIGR02673 97 YENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRV 146 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 44433322222333444556788999999998776666677888888875
No 87
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.13 E-value=1.1e-10 Score=93.55 Aligned_cols=89 Identities=28% Similarity=0.374 Sum_probs=62.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-eeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.+...+. .+.++||||+....... ......++..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-----~~~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG-----KGLGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc-----CCchHHHHHH
Confidence 378999999999999999998654 4666677777666666544444 78899999985321110 1112334455
Q ss_pred cCcccccceeeecCCc
Q 026174 220 VNLFEVLMVVFDVHRH 235 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g 235 (242)
+.-+|.+++|+|++++
T Consensus 76 ~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 76 IERTRLLLHVIDLSGD 91 (170)
T ss_pred HHhCCEEEEEEecCCC
Confidence 5668899999999876
No 88
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2.4e-11 Score=110.63 Aligned_cols=114 Identities=12% Similarity=0.172 Sum_probs=82.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~ 97 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMS 97 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHH
Confidence 3566789999999999999999999999999999876654432110 11234677777542 335566665
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+...++.++++.+++.+........+||+++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 98 FGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (369)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 543333445556667889999999998877777788999998876
No 89
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=2.7e-11 Score=110.59 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=86.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--------cccceEEEEEeeCCc---eeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--------TTTHEVLGVMTKADT---QICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--------~t~~~~~~~~~~~~~---~~~liDtpG~ 197 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+..|.... ...+..+++++|+.. ++++.|+..+
T Consensus 35 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~ 114 (377)
T PRK11607 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAF 114 (377)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 55678999999999999999999999999999987765442211 112245788887642 4467777766
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.....+.+..+..+++.++++.+++.++.-.....+||+++|+++
T Consensus 115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVA 159 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 544344566677788999999999998888888889999998763
No 90
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.12 E-value=5.7e-10 Score=87.63 Aligned_cols=95 Identities=28% Similarity=0.413 Sum_probs=66.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
|.+++++|++|+|||||+|.|.+......+..++++.......+......+.++||||+...... ...........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE----IEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch----HHHHHHHHHHH
Confidence 45789999999999999999999876556667777766544444444457789999998533211 11122334455
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+...+.+++|+|+..+..
T Consensus 77 ~~~~~~~~v~v~d~~~~~~ 95 (157)
T cd04164 77 AIEEADLVLFVIDASRGLD 95 (157)
T ss_pred HHhhCCEEEEEEECCCCCC
Confidence 5667889999999986543
No 91
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=2.9e-11 Score=102.14 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=76.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----ccceEEEEEeeCCc---eeEEeeccccch
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TTHEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......++++|... ..++.|...+..
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL 98 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHH
Confidence 4667899999999999999999999999999999876654432111 11234566665432 122333332222
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.........+.++++.+++.+.....+..+||+++|++
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 140 (220)
T cd03293 99 ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 222233344456788899999998877777778888888875
No 92
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=2.9e-11 Score=103.01 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=76.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc---------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT---------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t---------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .. ++..+++++|... ..+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 46678999999999999999999999999999998765544221 1 00 0134677776532 123
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+..+.....+....+.+.++.++++.+++.+..-.....++|+++|++
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV 154 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 344433321112333445566788999999998877666777888888875
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.11 E-value=3.3e-11 Score=101.70 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=77.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc---------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT---------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t---------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .. +...+++++|... ..+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 99 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT 99 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence 45677899999999999999999999999999998766544221 1 00 1134677776532 223
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+.......+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 444443322112233344456778899999998877777788888888875
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.11 E-value=3e-11 Score=101.91 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=76.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.|..
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 96 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHL 96 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHH
Confidence 46778999999999999999999999999999998766544321 11 11123566665432 12334443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+....+.++++.+++.+.....+..++++++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 142 (220)
T cd03263 97 RFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH
Confidence 3322222333444556788999999998776666777888888775
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.11 E-value=3.6e-10 Score=104.49 Aligned_cols=91 Identities=29% Similarity=0.386 Sum_probs=70.3
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHH-HHHHHHHHc
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWSAV 220 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~i~~~l~~~ 220 (242)
|+++|.+|||||||+|.|++.....+++.+++|+....+.+...+..+.++||||+... ...... ...++...+
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED-----DDGLDKQIREQAEIAI 76 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHH
Confidence 68999999999999999999877667888999988776666666678899999998532 222222 234455566
Q ss_pred CcccccceeeecCCccc
Q 026174 221 NLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~ 237 (242)
..+|.+++|+|..+|.+
T Consensus 77 ~~ad~vl~vvD~~~~~~ 93 (429)
T TIGR03594 77 EEADVILFVVDGREGLT 93 (429)
T ss_pred hhCCEEEEEEeCCCCCC
Confidence 77899999999987654
No 96
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=1.6e-10 Score=103.94 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=74.3
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee-CCceeEEeeccccchhccCCCHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
..+++--..|+|||.||||||||||.|++.+ +.+++.+++|+..+.+++.. +...+.++|+||+....+.. +.
T Consensus 152 ~lelk~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~-----~g 225 (335)
T PRK12299 152 RLELKLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG-----AG 225 (335)
T ss_pred EEEEcccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc-----cc
Confidence 3455556678999999999999999999865 45888899999998888765 34578999999997533211 12
Q ss_pred HHHHHHHHcCcccccceeeecCCc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
...+++..+.-++++++|+|+++.
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~ 249 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAV 249 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCC
Confidence 234667777788999999998764
No 97
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=7e-11 Score=95.53 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=84.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------ccceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------TTHEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------t~~~~~~~~~~~~~---~~~ 190 (242)
.+.+++..+++|+.++|||+||+|||||+-.+.|...+..++.... -+....++++|... +++
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~lt 104 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLT 104 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccch
Confidence 3566788999999999999999999999999999988775543211 13356777776431 233
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-.++..+...+.+....+....+..+++.+|+.+.+-+.--.++|+++|.|
T Consensus 105 AlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 105 ALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred hhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence 334444433344444455567789999999999999999999999999876
No 98
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.10 E-value=3.7e-11 Score=106.50 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=78.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +. ......++++|... .+++.|..
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 98 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENL 98 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHH
Confidence 46678999999999999999999999999999998766544321 11 11234677776532 23444444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv 144 (303)
T TIGR01288 99 LVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL 144 (303)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH
Confidence 3322222334445556778899999998877777778888888875
No 99
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.10 E-value=3.8e-11 Score=100.59 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=74.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......+++++... ..++.|
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~ 95 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence 4667899999999999999999999999999999876654432111 11123566665431 122333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..-+.....+.........+.++++.+++.+.+...+..+||+++|++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 143 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRV 143 (211)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 332211112223344456788899999998776666778888888876
No 100
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.10 E-value=3.5e-11 Score=100.41 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=75.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... .....+++++... ..+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENET 92 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCc
Confidence 46678999999999999999999999999999998766544321110 1124566665421 123
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|..-+.....+....+..+.+.++++.+++.+.....+..+++++++++
T Consensus 93 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~ 143 (206)
T TIGR03608 93 VEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRV 143 (206)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHH
Confidence 333332221122233444566788999999998777777777888888775
No 101
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=4.2e-11 Score=102.10 Aligned_cols=114 Identities=15% Similarity=0.208 Sum_probs=77.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---c--------ccceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---T--------TTHEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~--------t~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + . .....+++++|... ..++
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV 94 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence 45678999999999999999999999999999998766544221 1 0 01234566766532 1234
Q ss_pred eeccccchhc-cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~-~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.... .+.+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 145 (235)
T cd03261 95 FENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRV 145 (235)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 4444332111 1234445566788899999998877667777888888875
No 102
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.10 E-value=4.2e-11 Score=100.50 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=75.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|..... ......++++|... ..++.|...
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 94 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIA 94 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHH
Confidence 3567899999999999999999999999999999876554422110 11124566665432 123333333
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+....+....+.++++.+++.+.....+..++++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~ 139 (213)
T cd03301 95 FGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRV 139 (213)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHH
Confidence 221222333445566788899999998877777777888888765
No 103
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.10 E-value=3.1e-11 Score=101.66 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=77.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc---------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT---------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~---------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......+++++... ..++.|..
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 4667899999999999999999999999999999876654432111 11134566665431 12333333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+....+....+.++++.+++.+.+...+..+++++++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 3222222334445567788999999998877777788888888875
No 104
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.10 E-value=4.4e-11 Score=108.30 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=83.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~ 96 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIA 96 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHH
Confidence 4567899999999999999999999999999999876654432111 12235778877642 345556655
Q ss_pred cchhc----cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNK----SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~----~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.... ...+..+..+++.++++.+++.++.......+||+++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 97 FGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 43322 1234556677899999999999888888888999998876
No 105
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=2.2e-10 Score=107.38 Aligned_cols=97 Identities=30% Similarity=0.357 Sum_probs=75.7
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHH
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
+..+++.-..|+|||.||||||||||.|++.+. .+++.+++|+....+.+...+..+.++|+||++...+ +.+.
T Consensus 152 ~~leLk~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-----~g~g 225 (500)
T PRK12296 152 LVLELKSVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-----EGKG 225 (500)
T ss_pred EEEEecccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccc-----hhhH
Confidence 345666677899999999999999999998754 5788899999988888766666889999999974321 1122
Q ss_pred HHHHHHHHcCcccccceeeecCC
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
...+++..+.-++++++|+|++.
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcc
Confidence 33456777788899999999875
No 106
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=4.1e-11 Score=108.11 Aligned_cols=114 Identities=20% Similarity=0.206 Sum_probs=80.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc--------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT--------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t--------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... + .. .+..+++++|... ..++
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv 99 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcH
Confidence 46678999999999999999999999999999998766544321 1 00 1234677776532 2344
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+.+..+....+.++++.+++.+........+||+++|++
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 100 FDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 55544433333444555667888999999998877777778888888875
No 107
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=5.4e-11 Score=104.75 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=80.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C----------cccceEEEEEeeCCc----eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N----------TTTHEVLGVMTKADT----QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~----------~t~~~~~~~~~~~~~----~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .......++++|... ..++
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence 46778999999999999999999999999999998766544221 0 011245678877532 1234
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcc--cccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF--EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~--d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+.+..+....+.++++.+++. +........++|+++|++
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHH
Confidence 45544433333455666677889999999996 556666677888888765
No 108
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=4.4e-11 Score=109.83 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=82.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... +...++|++|... ..+
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 57888999999999999999999999999999998776544321100 1134677776532 234
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+..+.....+.+..+...++.++++.+++.+........+||+++|++
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv 173 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV 173 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH
Confidence 555554433333444555567788999999999887777788999988876
No 109
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.08 E-value=3e-09 Score=88.42 Aligned_cols=96 Identities=22% Similarity=0.280 Sum_probs=62.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-eeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
+.-.+|+++|++|||||||+|.|++.... ....+..|.......+...+. .+.++||||+.... +. ........
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~-~~~~~~~~ 113 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL---PH-QLVEAFRS 113 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCC---CH-HHHHHHHH
Confidence 33468999999999999999999997532 333344444433333333333 67899999985321 11 22233444
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.+......|.+++|+|++.+..
T Consensus 114 ~~~~~~~~d~ii~v~D~~~~~~ 135 (204)
T cd01878 114 TLEEVAEADLLLHVVDASDPDY 135 (204)
T ss_pred HHHHHhcCCeEEEEEECCCCCh
Confidence 5555667889999999987643
No 110
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.08 E-value=2.5e-11 Score=102.97 Aligned_cols=116 Identities=10% Similarity=0.172 Sum_probs=97.3
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----Cc-ccceEEEEEeeCC---ceeEEeecccc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----NT-TTHEVLGVMTKAD---TQICIFDTPGL 197 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~~-t~~~~~~~~~~~~---~~~~liDtpG~ 197 (242)
..++++++.+++|...|++|+||+||||.+..|+|...++.|... .. ...-.+||++... +.+++.|..-+
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~y 95 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY 95 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHH
Confidence 457788999999999999999999999999999998777544321 11 1123577877543 46789999999
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
...+.+++..+++..+..+++.+++.+..---++.++.+++|+|+
T Consensus 96 la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQ 140 (300)
T COG4152 96 LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQ 140 (300)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999874
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.08 E-value=6.4e-11 Score=100.48 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=76.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... +.. +....+++++... ..+
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t 104 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN 104 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence 35667999999999999999999999999999998766544321 100 0134666665432 123
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+.....+.+..+....+.++++.+++.+.....+..++++++|++
T Consensus 105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155 (228)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH
Confidence 444443321112223344566788999999998877666777888888765
No 112
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=5.5e-11 Score=104.22 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......++++|... ..++.|
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 4667899999999999999999999999999999876654422111 11234677777531 224555
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.....+.+..+....+.++++.+++.+........++|+++|.+
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv 149 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRV 149 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 554433333445556667889999999999877777778888888765
No 113
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.07 E-value=1.2e-10 Score=101.97 Aligned_cols=98 Identities=27% Similarity=0.329 Sum_probs=78.5
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
..+++.-..+++||.||+|||||+|+|...+. .+++.++||.+..++.+..++ ..+.+.|.||++...+-. +-
T Consensus 190 ~lELKsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n-----kG 263 (366)
T KOG1489|consen 190 ELELKSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN-----KG 263 (366)
T ss_pred EEEeeeecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccccccc-----Cc
Confidence 34556667789999999999999999998866 799999999999988755443 468999999998654321 12
Q ss_pred HHHHHHHHcCcccccceeeecCCcc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.-.++|..+.-++.+++|+|.+.++
T Consensus 264 lG~~FLrHiER~~~l~fVvD~s~~~ 288 (366)
T KOG1489|consen 264 LGYKFLRHIERCKGLLFVVDLSGKQ 288 (366)
T ss_pred ccHHHHHHHHhhceEEEEEECCCcc
Confidence 2457888899999999999998874
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=6e-11 Score=102.70 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=75.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----ccceEEEEEeeCCc---eeEEeeccccch
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TTHEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......++++|... ..++.|..-+..
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~ 95 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL 95 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHH
Confidence 3567899999999999999999999999999999876654432111 11123566666432 122333332211
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+....+....+.++++.+++.+........+||+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl 137 (255)
T PRK11248 96 QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137 (255)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 112333444556788999999998766666677888888765
No 115
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.07 E-value=6.3e-11 Score=106.76 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=79.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc---------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT---------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~---------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... .....++++++... .+++.|..
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l 135 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENL 135 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHH
Confidence 4667899999999999999999999999999999877665432111 11234677776532 23455555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-+.....+.+..+....+.++++.+++.+.....+..+|++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 136 LVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL 181 (340)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH
Confidence 4333333334445566778899999998877766777888888765
No 116
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.3e-11 Score=100.28 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=85.2
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCC---ceeEEee
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKAD---TQICIFD 193 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~---~~~~liD 193 (242)
..+++++..++.|...+++||||+|||||+..+.++.....|... ........+.+.|.. ..+++.|
T Consensus 15 ~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~d 94 (252)
T COG4604 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRD 94 (252)
T ss_pred EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHH
Confidence 357788999999999999999999999999988776554433221 111112222232322 3567888
Q ss_pred ccccc--hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLM--LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~--~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-.+|. +...|....+.+..+.++++.+++.++-...+|.++|+++|..
T Consensus 95 Lv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRA 144 (252)
T COG4604 95 LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRA 144 (252)
T ss_pred HhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhh
Confidence 88885 3333567778889999999999999999999999999999864
No 117
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=6.6e-11 Score=100.73 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=76.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .....+++++... .+++
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence 46678999999999999999999999999999998766544321 110 0234566665432 1233
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+.........+.++++.+++.+.....+..++++++|++
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV 149 (233)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH
Confidence 44433322222333444456788899999998877666777888888765
No 118
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=5.4e-11 Score=99.71 Aligned_cols=114 Identities=12% Similarity=0.223 Sum_probs=75.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc----cceEEEEEeeCCc---eeEEeeccccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT----THEVLGVMTKADT---QICIFDTPGLM 198 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t----~~~~~~~~~~~~~---~~~liDtpG~~ 198 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .....++++|... ..++.|..-+.
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence 35667899999999999999999999999999998766544321 111 1234566666432 12334443322
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
....+....+..+.+.++++.+++.+.....+..+++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 137 (210)
T cd03269 95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKV 137 (210)
T ss_pred HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHH
Confidence 2222333344566788899999998766666677888888765
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.07 E-value=5.7e-11 Score=99.69 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=75.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c--------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T--------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t--------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... +. . .....++++|... ..++
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 46678999999999999999999999999999998765544221 10 0 1124566665432 1233
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+...++..+.+.++++.+++.+........++++++|.+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV 145 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH
Confidence 33333222222233444556788899999998776666677888888775
No 120
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=6.8e-11 Score=103.11 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=77.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c---------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T---------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t---------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . +...+++++|... ..+
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 118 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT 118 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCc
Confidence 57889999999999999999999999999999998766544221 10 0 1124566666432 122
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+.....+.........+.++++.+++.+.+...+..++++++|.+
T Consensus 119 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 169 (269)
T cd03294 119 VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169 (269)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH
Confidence 333333222222233444456788899999998877777788888888875
No 121
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.06 E-value=6e-11 Score=105.11 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=80.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +.. .....+++++... .+++.|..
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l 96 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYL 96 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHH
Confidence 46678999999999999999999999999999998766554321 110 1234677776532 23444554
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-+.....+.+..+...++.++++.+++.+..-..+..++++++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 142 (301)
T TIGR03522 97 QFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV 142 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHH
Confidence 4333333444455566788999999999887777788888888875
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=4.6e-11 Score=100.19 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=74.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+| .++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.|..
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFL 93 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHH
Confidence 356678999999 9999999999999999999998766544321 10 11234566665432 12333443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+....+.++++.+++.+..-..+..+++++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 139 (211)
T cd03264 94 DYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139 (211)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH
Confidence 3322222333344456788899999998776666777888888875
No 123
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.06 E-value=6.5e-11 Score=101.07 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=75.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .....++++|... ..++.|..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 95 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence 35668899999999999999999999999999998766544321 110 0123566665432 12334443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.........+.++++.+++.+.....+..+||+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRV 141 (236)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 3322222233344456788899999998776666677888888765
No 124
>PRK10908 cell division protein FtsE; Provisional
Probab=99.06 E-value=6.6e-11 Score=100.04 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=75.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .....++++|... ..++
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV 96 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccH
Confidence 35678999999999999999999999999999998766544321 110 1234566666532 1233
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+.+..+....+.++++.+++.+........+++++++++
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 146 (222)
T PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV 146 (222)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHH
Confidence 34333221122334445556778899999998766666677888888765
No 125
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=7.3e-11 Score=104.86 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=79.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------------------------------c
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------------------------------T 173 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------------------------------~ 173 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.... .
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK 101 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHH
Confidence 466789999999999999999999999999999987665443110 0
Q ss_pred ccceEEEEEeeCCc-ee---EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 174 TTHEVLGVMTKADT-QI---CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 174 t~~~~~~~~~~~~~-~~---~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
..+..+++++|... .+ ++.|...+.....+.+.++...++.++++.+++. ++.......+||+++|.+
T Consensus 102 ~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrv 174 (305)
T PRK13651 102 EIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRV 174 (305)
T ss_pred HHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 11234677877532 11 3334443333333456667778899999999996 666666777888888765
No 126
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.06 E-value=7e-11 Score=107.86 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=84.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc------------------cceEEEEEeeCCc--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------------THEVLGVMTKADT-- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t------------------~~~~~~~~~~~~~-- 187 (242)
.++++++.+++|.+++|+|+||+|||||+++|+|...+..|...... +...+++++|...
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~ 118 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM 118 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCC
Confidence 47789999999999999999999999999999998776544221110 1134677777542
Q ss_pred -eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 -QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 -~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..++.|+..+.....+.+..+.+..+.++++.+++.++.......++|+++|.+
T Consensus 119 p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV 173 (382)
T TIGR03415 119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV 173 (382)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 345666665543333445556667889999999999888877888999988876
No 127
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.05 E-value=8.6e-11 Score=99.86 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=75.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------c-cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------T-THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t-~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . .....++++|... ..++.|
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 94 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEE 94 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHH
Confidence 46678999999999999999999999999999998766544221 10 0 1123566665432 123344
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..-+.....+....+....+.++++.+++.+.....+..++++++|++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 142 (232)
T cd03218 95 NILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRV 142 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 433222222223344456778899999998877777778888888875
No 128
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.05 E-value=7.4e-11 Score=99.06 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=75.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----ccceEEEEEeeCCce-----eEEeecccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TTHEVLGVMTKADTQ-----ICIFDTPGL 197 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~~~~~~~~~~~~~~-----~~liDtpG~ 197 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|..... ..+...++++|.... .++.|..-+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~ 93 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLM 93 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHh
Confidence 4667899999999999999999999999999999876655533211 112346777765321 233333322
Q ss_pred chhcc----CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 198 MLNKS----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 198 ~~~~~----~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..... ..........+.++++.+++.+.....+..+||+++|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 141 (213)
T cd03235 94 GLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRV 141 (213)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH
Confidence 11110 011233456788899999998766666777888888875
No 129
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=1.7e-10 Score=97.74 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=87.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-------------ccceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-------------TTHEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-------------t~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|+..+++|+||+|||||+++|.|+..++.|+.... ..+..+|+++|.+. .+++
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 3566789999999999999999999999999999988876543211 12345888988753 5689
Q ss_pred eeccccchh-ccCCCHHHHHHHHHHHHHHcCcccc-cceeeecCCccccccc
Q 026174 192 FDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEV-LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~-ll~v~D~~~g~~~~~i 241 (242)
+|+.+|... .+.++...+++.+..-++.+|+... .-..-..++|++++.+
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence 999999643 3457888888899999999999765 4444455777777654
No 130
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=9.5e-11 Score=102.77 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=80.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.....+ .....++++|... ..++.|
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 101 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD 101 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH
Confidence 45678999999999999999999999999999998776554321111 1234677777532 123445
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.-+.....+.+..+...++.++++.+++.+.+......+||++++++
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv 149 (279)
T PRK13635 102 DVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV 149 (279)
T ss_pred HHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 443322223344555567889999999999888888888999888875
No 131
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=8e-11 Score=102.97 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=79.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... + .......++++|... ..++.|
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 99 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD 99 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH
Confidence 46678999999999999999999999999999998766544221 1 011234677777532 123444
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.....+.+..+.+..+.++++.+++.+.....+..+||+++|++
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv 147 (274)
T PRK13647 100 DVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147 (274)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHH
Confidence 443322222344455567788999999998877777788888888765
No 132
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.04 E-value=1.7e-09 Score=85.14 Aligned_cols=94 Identities=37% Similarity=0.578 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+++++|.+|+|||||+|.++|.........+.+++.............+.++||||+...... ...........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK----LGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH----HHHHHHHHHHH
Confidence 45689999999999999999999876555555555555444433333356789999998643211 11111223344
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.....+.+++++|...+.
T Consensus 79 ~~~~~d~i~~v~d~~~~~ 96 (168)
T cd04163 79 ALKDVDLVLFVVDASEPI 96 (168)
T ss_pred HHHhCCEEEEEEECCCcc
Confidence 567778999999998763
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.1e-10 Score=102.49 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=79.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc------------ccceEEEEEeeCCc----eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT------------TTHEVLGVMTKADT----QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~------------t~~~~~~~~~~~~~----~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......+++++... ..++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 100 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV 100 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccH
Confidence 4567899999999999999999999999999999876654422111 11234677776532 1234
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+.+..+....+.++++.+++.+.....+..++++++|++
T Consensus 101 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150 (283)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHH
Confidence 44443322223345555567789999999999888888888999988875
No 134
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.04 E-value=7.1e-10 Score=94.84 Aligned_cols=90 Identities=24% Similarity=0.384 Sum_probs=67.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+++++|+||+|||||+|.|+|... .++..+++|.....+.+...+..+.++|+||+...... ......+.+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~-----~~~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD-----GKGRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCccccccc-----chhHHHHHHHhh
Confidence 578999999999999999999764 36677888877667766666667889999998542211 112334456677
Q ss_pred CcccccceeeecCCcc
Q 026174 221 NLFEVLMVVFDVHRHL 236 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~ 236 (242)
.-+|.+++|+|+++..
T Consensus 76 ~~ad~il~V~D~t~~~ 91 (233)
T cd01896 76 RTADLILMVLDATKPE 91 (233)
T ss_pred ccCCEEEEEecCCcch
Confidence 7889999999987654
No 135
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=1.1e-10 Score=100.06 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=75.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......+++++... ..++.|+
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN 95 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence 45678999999999999999999999999999998766544221 11 11124566665432 1234444
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCccc--ccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFE--VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d--~ll~v~D~~~g~~~~~i 241 (242)
..+.....+.+..+....+.++++.+++.+ ........++++++|++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv 144 (242)
T cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRV 144 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHH
Confidence 433222223344455667889999999985 55565677888888775
No 136
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.2e-10 Score=99.69 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=74.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.|...
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 96 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVA 96 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHh
Confidence 45678999999999999999999999999999998766544221 10 01123566666432 123334333
Q ss_pred cchhccCC----CHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGY----SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~----~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+....... ...+....+.++++.+++.+.....+..++++++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 145 (239)
T cd03296 97 FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRV 145 (239)
T ss_pred hhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 22111111 2233455678899999998776666677888888765
No 137
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.3e-10 Score=102.21 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=77.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------ccceEEEEEeeCCc----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------TTHEVLGVMTKADT----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------t~~~~~~~~~~~~~----~~ 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... .....++++++... ..
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 101 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN 101 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccc
Confidence 4677899999999999999999999999999999877654422110 11234677776531 12
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+...++....+.++++.+++. +.....+..+|++++|.+
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 102 TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH
Confidence 3444443322222344555566788999999996 566666677888888765
No 138
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.2e-10 Score=102.25 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=80.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee---cCCC--C---c-----ccceEEEEEeeCCc----eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV---SRKT--N---T-----TTHEVLGVMTKADT----QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~---~~~~--~---~-----t~~~~~~~~~~~~~----~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+.. |... + . .....+++++|... ..+
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCC
Confidence 4667899999999999999999999999999999875543 2111 0 0 11234677776532 234
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+.....+.+..+..+++.++++.+++.+........+++++++++
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv 152 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRV 152 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 555554433333445556667889999999998877777788888888875
No 139
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.4e-10 Score=101.15 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=75.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc----------ccceEEEEEeeCCcee----EE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT----------TTHEVLGVMTKADTQI----CI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~----------t~~~~~~~~~~~~~~~----~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. .....+++++|..... .+
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 95 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDI 95 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccH
Confidence 46678999999999999999999999999999998766544221 10 1113466777653211 12
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+....+....+.++++.+++.+.....+..+||+++|++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 145 (271)
T PRK13638 96 DSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV 145 (271)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHH
Confidence 22222211222334445556788899999998777666777888888765
No 140
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.03 E-value=8.3e-11 Score=98.28 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=74.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------cceEEEEEeeCCc----eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------THEVLGVMTKADT----QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------~~~~~~~~~~~~~----~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... ....+++++|... ..++.|+..
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~ 94 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELL 94 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHh
Confidence 46678999999999999999999999999999998766554321111 1234667766531 123333332
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+...... .....+.++++.+++.+.....+..+|++++|++
T Consensus 95 ~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 135 (205)
T cd03226 95 LGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRL 135 (205)
T ss_pred hhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHH
Confidence 2211111 1124678899999998877777788888888875
No 141
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.3e-10 Score=101.55 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=78.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-----------cccceEEEEEeeCCc----eeEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-----------TTTHEVLGVMTKADT----QICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-----------~t~~~~~~~~~~~~~----~~~li 192 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.... .......++++|... ..++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 466789999999999999999999999999999987665442210 011234667766532 12344
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|+.-+.....+.+..+..+.+.++++.+++.+.....+..++++++|++
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 145 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCV 145 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHH
Confidence 4443322222345555567788999999998877777788888888765
No 142
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.2e-10 Score=102.52 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=79.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------------ccceEEEEEeeCCc-ee---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------------TTHEVLGVMTKADT-QI--- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------------t~~~~~~~~~~~~~-~~--- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ..+..+++++|... .+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED 101 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchh
Confidence 56778999999999999999999999999999998766544221 10 11235677877532 11
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+.+..+....+.++++.+++. +........++|+++|.+
T Consensus 102 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 3444444332223445566677889999999996 566666777888888765
No 143
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.02 E-value=1.6e-09 Score=95.83 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=59.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+||||||++|+|+|.....++.....+.+.........+..+.++||||+..... ..+...+.+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~--~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY--INDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH--HHHHHHHHHHHH
Confidence 456688999999999999999999988766665555544433333333456789999999975311 112223334433
Q ss_pred HHHcCcccccceeee
Q 026174 217 WSAVNLFEVLMVVFD 231 (242)
Q Consensus 217 l~~~~l~d~ll~v~D 231 (242)
+... -.|++++|.+
T Consensus 114 l~~~-g~DvVLyV~r 127 (313)
T TIGR00991 114 LLGK-TIDVLLYVDR 127 (313)
T ss_pred hhcC-CCCEEEEEec
Confidence 3322 3678888844
No 144
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.6e-10 Score=101.72 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=78.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------ccceEEEEEeeCCc-e---e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------TTHEVLGVMTKADT-Q---I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------t~~~~~~~~~~~~~-~---~ 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... ......++++|.+. . .
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 100 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE 100 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccc
Confidence 4667899999999999999999999999999999876654422110 11234677777532 1 1
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+.+..+...++.++++.+++. ++.......++|+++|++
T Consensus 101 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 101 TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV 153 (288)
T ss_pred hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH
Confidence 3444444333333445566677889999999995 455566677888888765
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.02 E-value=1.6e-10 Score=96.95 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=75.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc------------ccceEEEEEeeCCc---eeEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT------------TTHEVLGVMTKADT---QICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~------------t~~~~~~~~~~~~~---~~~li 192 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......+++++... ...+.
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL 94 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence 3566789999999999999999999999999999876654422110 01134566665432 12344
Q ss_pred eccccchh-ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|...+... ..+....+..+.+.++++.+++.+.+......++++++|++
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 144 (213)
T cd03262 95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRV 144 (213)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHH
Confidence 44433211 11233344556788899999998776777777888888875
No 146
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.02 E-value=2.1e-09 Score=85.61 Aligned_cols=97 Identities=26% Similarity=0.366 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+++++|.+|+|||||+|+|.+......+..+++++......+...+..+.++||||+..........+ .......+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e-~~~~~~~~~~ 81 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIE-KYSVLRTLKA 81 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHH-HHHHHHHHHH
Confidence 468999999999999999999876555566677776655444445555678999999864321111111 1112334455
Q ss_pred cCcccccceeeecCCccc
Q 026174 220 VNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~~ 237 (242)
....|.+++|+|...+.+
T Consensus 82 ~~~~d~vi~v~d~~~~~~ 99 (174)
T cd01895 82 IERADVVLLVIDATEGIT 99 (174)
T ss_pred HhhcCeEEEEEeCCCCcc
Confidence 667899999999887654
No 147
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.01 E-value=7.3e-10 Score=102.38 Aligned_cols=96 Identities=24% Similarity=0.290 Sum_probs=72.3
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
.+++--.-|+|+|.||||||||||+|++.+. .++..+++|...+.+.+... ...+.++|+||+....+. -...
T Consensus 153 lelk~~adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-----~~gL 226 (424)
T PRK12297 153 LELKLLADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-----GVGL 226 (424)
T ss_pred EeecccCcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-----cchH
Confidence 3344445789999999999999999998764 57788999998888876554 467899999999743221 1123
Q ss_pred HHHHHHHcCcccccceeeecCCc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
...++..+.-++++++|+|+++.
T Consensus 227 g~~fLrhier~~llI~VID~s~~ 249 (424)
T PRK12297 227 GHQFLRHIERTRVIVHVIDMSGS 249 (424)
T ss_pred HHHHHHHHhhCCEEEEEEeCCcc
Confidence 45567777788999999998753
No 148
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.01 E-value=1.5e-10 Score=98.67 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=74.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . .+...++++|... ..++.|
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~ 94 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE 94 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence 45677899999999999999999999999999998765544221 10 0 1123566666432 123333
Q ss_pred ccccchhccCC----------CHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGY----------SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~----------~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+....... ...+....+.++++.+++.+.....+..+||+++|++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHH
Confidence 33222111111 1234456788899999998877777778888888875
No 149
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.01 E-value=2.2e-09 Score=87.64 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=64.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCC-HHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~i~ 214 (242)
.....++++|.+|+|||||+|.|.+.. ...++..+++|........ +..+.++||||+........ ..+......
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 456678999999999999999999875 4556666777765432212 24678999999854322111 122222334
Q ss_pred HHHHHcCcccccceeeecCCcccc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.++......+.+++|+|..++.+.
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~ 116 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKE 116 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCH
Confidence 445544455789999998775543
No 150
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.01 E-value=1.4e-09 Score=85.47 Aligned_cols=91 Identities=27% Similarity=0.367 Sum_probs=60.9
Q ss_pred EEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCc
Q 026174 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (242)
Q Consensus 143 ~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l 222 (242)
+++|.+|+|||||+|.|.+......+..+++|+..........+..+.++||||+..... ...............-
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHHHHHHHh
Confidence 478999999999999999976555666677776654444444445678999999853211 1111122233444556
Q ss_pred ccccceeeecCCccc
Q 026174 223 FEVLMVVFDVHRHLT 237 (242)
Q Consensus 223 ~d~ll~v~D~~~g~~ 237 (242)
.|.+++|+|...+.+
T Consensus 77 ~d~ii~v~d~~~~~~ 91 (157)
T cd01894 77 ADVILFVVDGREGLT 91 (157)
T ss_pred CCEEEEEEeccccCC
Confidence 789999999876543
No 151
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.6e-10 Score=101.15 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=77.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. ......+++++... ..++.|
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~ 98 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ 98 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence 46678999999999999999999999999999998766544221 11 11124567766532 113333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..-+.....+.+.......+.++++.+++.+.....+..+++++++++
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV 146 (277)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 332221122344555566788999999998877777778888888765
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.01 E-value=1.2e-09 Score=102.65 Aligned_cols=96 Identities=24% Similarity=0.308 Sum_probs=70.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHH-HHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR-VES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-i~~ 215 (242)
.....|+|+|.+|||||||+|.|++.....++..+++|+....+.+...+..+.++||||+.... ...... ..+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~-----~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA-----KGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc-----hhHHHHHHHH
Confidence 44567999999999999999999997766677888888876655555555678899999985321 112222 233
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+...+..+|.+++|+|+.++.+
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s 132 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGAT 132 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCC
Confidence 4445677899999999998754
No 153
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.01 E-value=2e-09 Score=99.84 Aligned_cols=93 Identities=27% Similarity=0.376 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHH-HHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~i~~~l~ 218 (242)
..|+++|.+|||||||+|.|.+.....++..+++|+....+.+...+..+.++||||+.... ..... ....+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD-----DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc-----hhHHHHHHHHHHH
Confidence 35889999999999999999998776678888888877666555556678999999986411 11222 2333455
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+.-+|++++|+|..++.+
T Consensus 77 ~~~~ad~il~vvd~~~~~~ 95 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLT 95 (435)
T ss_pred HHHhCCEEEEEEECCCCCC
Confidence 6677899999999987654
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.5e-10 Score=100.92 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=77.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----Cc-----ccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----NT-----TTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~~-----t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... .. ..+..++++++... ..++.|
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 103 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVED 103 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHH
Confidence 35668999999999999999999999999999998766544211 11 11234667776531 123444
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..-+.....+.+..+....+.++++.+++.+.+...+..++++++|++
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (271)
T PRK13632 104 DIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV 151 (271)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH
Confidence 443322222334455566788899999998877777788888888875
No 155
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.00 E-value=1.6e-10 Score=100.11 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=74.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc--------cceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT--------THEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t--------~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +.. .....+++++... ..++.|+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 96 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEV 96 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHH
Confidence 46678999999999999999999999999999998766544321 110 1123566665432 1233444
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-+...............+.++++.+++.+.....+..+||+++|++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv 143 (258)
T PRK13548 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV 143 (258)
T ss_pred HHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 32211111112233445678899999998776666777888888875
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.00 E-value=4e-10 Score=90.58 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=59.8
Q ss_pred EEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCc
Q 026174 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (242)
Q Consensus 144 lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l 222 (242)
++|++|||||||+|+|.+... .++..+++|.....+.+... +..+.++||||+....... +....+++..+.-
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-----~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG-----RGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC-----CCccHHHHHHHhc
Confidence 579999999999999999765 45666777766655555444 5678999999985322111 1111234445556
Q ss_pred ccccceeeecCCc
Q 026174 223 FEVLMVVFDVHRH 235 (242)
Q Consensus 223 ~d~ll~v~D~~~g 235 (242)
++.+++|+|+...
T Consensus 75 ~d~ii~v~d~~~~ 87 (176)
T cd01881 75 ADAILHVVDASED 87 (176)
T ss_pred cCEEEEEEeccCC
Confidence 8999999999775
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2.1e-10 Score=100.40 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=74.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------------ccceEEEEEeeCCc-e---e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------------TTHEVLGVMTKADT-Q---I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------------t~~~~~~~~~~~~~-~---~ 189 (242)
.++++++.+++|.+++|+|+||+|||||+++|+|...+..|... +. ..+..+++++|... . .
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 101 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE 101 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccc
Confidence 46678999999999999999999999999999998766544321 10 11234567776531 1 1
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|+..+.....+....+....+.++++.+++. +.....+..+|++++|++
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 3334333222222334445556778889999996 455556677888888775
No 158
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.9e-10 Score=101.36 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=77.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------------ccceEEEEEeeCCc-e---e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------------TTHEVLGVMTKADT-Q---I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------------t~~~~~~~~~~~~~-~---~ 189 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... +. .....+++++|... . .
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~ 101 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE 101 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhh
Confidence 46778999999999999999999999999999998766544221 11 11234677777532 1 2
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+.+..+....+.++++.+++. ++.-..+..++++++|++
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (290)
T PRK13634 102 TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRV 154 (290)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHH
Confidence 3444443322233445556667889999999996 555555667778887765
No 159
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.99 E-value=2e-10 Score=98.18 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=76.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc----------ccceEEEEEeeCCc---eeEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT----------TTHEVLGVMTKADT---QICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~----------t~~~~~~~~~~~~~---~~~li 192 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. ......++++|... ..++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 95 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL 95 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHH
Confidence 36678999999999999999999999999999998765544221 10 11224566666432 22334
Q ss_pred eccccch-hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 193 DTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 193 DtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
|...+.. ...+....+....+.++++.+++.+.....+..++++++++++
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 146 (240)
T PRK09493 96 ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVA 146 (240)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHH
Confidence 4433221 1122334445567889999999987777777778888888753
No 160
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=2e-10 Score=98.34 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=75.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------c-cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------T-THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t-~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+++|..++|+|+||+|||||+++|.|...+..|... +. . .+...+++++... ..++.|
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD 97 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH
Confidence 45678999999999999999999999999999998766544221 10 0 1234566666532 123444
Q ss_pred ccccchhcc-CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~-~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+..... ..+..+....+.++++.+++.+.....+..++++++|++
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 146 (241)
T PRK10895 98 NLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRV 146 (241)
T ss_pred HHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHH
Confidence 443321111 123344456788899999998776666677888888765
No 161
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.6e-10 Score=100.04 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-----c------ccceEEEEEeeCCce-e---EEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-----T------TTHEVLGVMTKADTQ-I---CIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-----~------t~~~~~~~~~~~~~~-~---~li 192 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.... . ......++++|.... + .+.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 104 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVE 104 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHH
Confidence 466789999999999999999999999999999987665442210 0 112346777765321 1 233
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|...+.....+.+..+....+.++++.+++.+..-..+..+|++++|++
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv 153 (280)
T PRK13633 105 EDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRV 153 (280)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 3333332223344556667789999999998877777788888888875
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.7e-10 Score=99.28 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCcee----EEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADTQI----CIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~~~----~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......+++++..... .+.+
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~ 103 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY 103 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH
Confidence 45678999999999999999999999999999998766544221 10 1123456666653211 1223
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.....+.........+.++++.+++.+........+++++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (269)
T PRK13648 104 DVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV 151 (269)
T ss_pred HHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH
Confidence 222222222334445556788899999998777666777888887765
No 163
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.98 E-value=9e-10 Score=98.84 Aligned_cols=97 Identities=28% Similarity=0.335 Sum_probs=72.7
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
..+++--..|+|||.||||||||+|.|++... .++..+++|...+.+.+...+ ..+.++|+||+....+. . +.
T Consensus 151 ~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~---~g 224 (329)
T TIGR02729 151 RLELKLLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--G---AG 224 (329)
T ss_pred EEEeeccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--c---cc
Confidence 44555666789999999999999999998653 578888999988888776554 57899999999643221 1 11
Q ss_pred HHHHHHHHcCcccccceeeecCCc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
....+++.+.-++.+++|+|++..
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~ 248 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPL 248 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccc
Confidence 234556667778899999998764
No 164
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.98 E-value=2.3e-10 Score=97.87 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=73.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc----eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT----QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~----~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....+++++... ..++.|.
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~ 115 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS 115 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHH
Confidence 57778999999999999999999999999999998766544321111 1123455542211 1122333
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+.....+....+....+..+++.+++.+.....+..+++++++++
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl 162 (236)
T cd03267 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRA 162 (236)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 22222222334445556778889999998776666777888888765
No 165
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.7e-10 Score=99.65 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=76.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---c-------ccceEEEEEeeCCc----eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---T-------TTHEVLGVMTKADT----QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~-------t~~~~~~~~~~~~~----~~~l 191 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... + . .....+++++|... ..++
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTV 96 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccH
Confidence 45678999999999999999999999999999998665544221 1 0 11234677777532 1133
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+....+....+.++++.+++.++....+..+|++++|++
T Consensus 97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv 146 (275)
T PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRV 146 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHH
Confidence 33332211112333445556788999999998877777788888888865
No 166
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=2.6e-10 Score=97.60 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------------cceEEEEEeeCCc---e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------------THEVLGVMTKADT---Q 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------------~~~~~~~~~~~~~---~ 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....++++|... .
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPH 96 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCC
Confidence 45667899999999999999999999999999998766544221110 0123566665432 1
Q ss_pred eEEeecccc-chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 189 ICIFDTPGL-MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~-~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.++.|.... .....+....+....+.++++.+++.+.+......++|+++|++
T Consensus 97 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 150 (242)
T PRK11124 97 LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRV 150 (242)
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 123333221 11111233344456788899999998877777788999988875
No 167
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.97 E-value=2.3e-10 Score=97.51 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=72.9
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----cceEEEEEeeCCc---eeEEeeccccchh-
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----THEVLGVMTKADT---QICIFDTPGLMLN- 200 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----~~~~~~~~~~~~~---~~~liDtpG~~~~- 200 (242)
+++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....++++|... .+++.|...+...
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 457889999999999999999999999999998766544322111 1111245555421 1233344322111
Q ss_pred -ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 201 -KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 201 -~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.......+....+.++++.+++.+.....+..+||+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 123 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRV 123 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHH
Confidence 11223344456688899999998877777777888888875
No 168
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=3.9e-10 Score=94.51 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=72.2
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------cceEEEEEeeCCc---eeEEeeccccch
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------THEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... .....++++|... ..++.|...+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 56899999999999999999999999999998766544221111 1234666766532 122333332211
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..........+..+.++++.+++.+........++++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 137 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHH
Confidence 100011123355788899999998877777788888888875
No 169
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.97 E-value=2.6e-10 Score=99.37 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=75.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc--------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT--------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t--------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .. .....++++|... ..++
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 101 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV 101 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCH
Confidence 35668999999999999999999999999999998766544321 1 00 1224566666432 1233
Q ss_pred eeccccchhc-cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~-~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.... ...+.......+.++++.+++.+.....+..+||+++|++
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 102 FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 4444332111 1123344455678889999998877777788889988876
No 170
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.96 E-value=3.4e-10 Score=95.18 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=73.5
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccccc
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPGLM 198 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG~~ 198 (242)
.++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......+++++... ..++.|+..+.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 45789999999999999999999999999999876654422110 11234566666532 12344444322
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..............+.++++.+++.+.....+..++++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 137 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHH
Confidence 1111111122345678899999998877777788888888765
No 171
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.96 E-value=2.9e-10 Score=96.38 Aligned_cols=114 Identities=14% Similarity=0.159 Sum_probs=73.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc-----ceeecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~-----~~~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|.. .+..|... +. ......++++|....
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 94 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP 94 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence 466789999999999999999999999999999987 55444221 10 112346677765321
Q ss_pred eEEeeccccchhccCCCH-HHHHHHHHHHHHHcCccccccee--eecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGYSH-KDVKVRVESAWSAVNLFEVLMVV--FDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~-~~~~~~i~~~l~~~~l~d~ll~v--~D~~~g~~~~~i 241 (242)
.++.|+.-+.....+... .+....+.++++.+++.+..... ...+||+++|++
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHH
Confidence 233333322211122222 23456788899999998765444 367888888765
No 172
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.96 E-value=4e-10 Score=96.87 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=74.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---c-------------ccceEEEEEeeCCc--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---T-------------TTHEVLGVMTKADT-- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~-------------t~~~~~~~~~~~~~-- 187 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + . ..+...++++|...
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF 97 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccC
Confidence 45678999999999999999999999999999998665433211 0 0 01224566666432
Q ss_pred -eeEEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 -QICIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 -~~~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..++.|+..+... ............+.++++.+++.+.....+..++++++|++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 98 PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 1233444322111 11223344456788899999998766666777888888875
No 173
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.96 E-value=3.9e-09 Score=88.94 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=56.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecC-CCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
+|+|+|.+|+||||++|.|+|.....++. ....|...........+..+.++||||+.... .+.++....+.+.+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~--~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD--GSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETT--EEHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCc--ccHHHHHHHHHHHHHh
Confidence 57899999999999999999987765542 33445444443344556788999999996432 2345555555554443
Q ss_pred c-CcccccceeeecC
Q 026174 220 V-NLFEVLMVVFDVH 233 (242)
Q Consensus 220 ~-~l~d~ll~v~D~~ 233 (242)
. .-.+++++|+...
T Consensus 80 ~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG 94 (212)
T ss_dssp TTT-ESEEEEEEETT
T ss_pred ccCCCeEEEEEEecC
Confidence 3 3367888888765
No 174
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.96 E-value=3.9e-10 Score=95.96 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=69.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce----eecCCCCcc--------cceEEEEEeeCCce-e----EE
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKTNTT--------THEVLGVMTKADTQ-I----CI 191 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~----~~~~~~~~t--------~~~~~~~~~~~~~~-~----~l 191 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|.....+ +....+++++.... + .+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4567899999999999999999999999999998765 333221111 11245666665321 1 11
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcc---cccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF---EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~---d~ll~v~D~~~g~~~~~i 241 (242)
.+...+.....+.........+.++++.+++. +.....+..++++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv 134 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRV 134 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHH
Confidence 11111111111222333456788899999997 445555566777877765
No 175
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.95 E-value=3e-09 Score=101.35 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
..++++|.||||||||+|+|+|.+. .+++.||.|..+..|.+...+..+.++|.||.+.- ...+.+| ....+++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL-~~~S~DE--~Var~~ll- 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL-TAYSEDE--KVARDFLL- 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC-CCCCchH--HHHHHHHh-
Confidence 4589999999999999999999866 59999999999999998877778999999999732 2223332 33444444
Q ss_pred cCcccccceeeecCC
Q 026174 220 VNLFEVLMVVFDVHR 234 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~ 234 (242)
-+-.|+++.|+|+++
T Consensus 79 ~~~~D~ivnVvDAtn 93 (653)
T COG0370 79 EGKPDLIVNVVDATN 93 (653)
T ss_pred cCCCCEEEEEcccch
Confidence 455689999999875
No 176
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.95 E-value=4.2e-10 Score=95.17 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=72.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----Cc--c------------cceEEEEEeeCCc--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----NT--T------------THEVLGVMTKADT-- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----~~--t------------~~~~~~~~~~~~~-- 187 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . +....++++|...
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI 102 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence 46778999999999999999999999999999998765544221 10 0 1124566665432
Q ss_pred -eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccc-cceeeecCCccccccc
Q 026174 188 -QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV-LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 -~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~-ll~v~D~~~g~~~~~i 241 (242)
..++.|...+.....+.........+.++++.+++.+. ....+..++++++|++
T Consensus 103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 11222222211111233334445678889999999763 3445666777877765
No 177
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.95 E-value=3.1e-10 Score=101.92 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=77.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----------cceEEEEEeeCCc-----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----------THEVLGVMTKADT-----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----------~~~~~~~~~~~~~-----~~ 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +.. .+..+++++|+.. .+
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 46678999999999999999999999999999998766544221 110 1235677777631 22
Q ss_pred EEeeccccchhcc--CCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKS--GYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~--~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+....+ +.+..+....+.++++.+++. +........+||+++|.+
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv 170 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI 170 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH
Confidence 3444443222111 245566677888999999994 455566677888888875
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.95 E-value=2.8e-09 Score=105.14 Aligned_cols=95 Identities=22% Similarity=0.397 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+++++|.||||||||+|.|+|.+. .+++.+++|.....+.+...+..+.++|+||........+....++.+....-.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 4689999999999999999999865 578889999987777766666688999999986422111111112222222222
Q ss_pred cCcccccceeeecCCc
Q 026174 220 VNLFEVLMVVFDVHRH 235 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g 235 (242)
.+-.|.+++|+|+++.
T Consensus 83 ~~~aD~vI~VvDat~l 98 (772)
T PRK09554 83 SGDADLLINVVDASNL 98 (772)
T ss_pred ccCCCEEEEEecCCcc
Confidence 4567999999999774
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=3.6e-10 Score=98.98 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=77.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCc----eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADT----QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~----~~~liD 193 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... ......++++|... ...+.|
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED 101 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH
Confidence 3567899999999999999999999999999999876654432110 11234677776532 123444
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.....+....+..+.+..+++.+++.++.-..+..++|+++|++
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (277)
T PRK13642 102 DVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV 149 (277)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 443222222334445566788999999998877766777888888765
No 180
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.95 E-value=8.4e-10 Score=96.96 Aligned_cols=93 Identities=27% Similarity=0.417 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...+++||+|+||||||||.|++.+. .+++.+++|....-|++...+..+.++|.||++.....- +.+-.+++.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g-----~grG~~vls 136 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSG-----RGRGRQVLS 136 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccC-----CCCcceeee
Confidence 35789999999999999999999765 488899999998888888888899999999998653321 122346777
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+.-+|++++|+|+.....
T Consensus 137 v~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 137 VARNADLIIIVLDVFEDPH 155 (365)
T ss_pred eeccCCEEEEEEecCCChh
Confidence 7888999999999987654
No 181
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.94 E-value=4.2e-10 Score=96.31 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=73.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .....++++|... .+++
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV 96 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccH
Confidence 46778999999999999999999999999999998766544221 110 1234666766432 1233
Q ss_pred eeccccchhc--------cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNK--------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~--------~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+.-+.... ...........+.++++.+++.+.....+..+||+++|++
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 97 LENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred HHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 3333221100 0111223356788899999998776666677888888875
No 182
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4.9e-10 Score=95.45 Aligned_cols=114 Identities=11% Similarity=0.134 Sum_probs=74.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--c------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--T------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--~------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... . ......+++++... ...+.|...
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~ 94 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIA 94 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHH
Confidence 456678999999999999999999999999999987665442111 0 01234566665432 112333332
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.........+..+++.+++.+.+-..+..+++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl 139 (232)
T cd03300 95 FGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRV 139 (232)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 222222233444556788899999998877777777888887765
No 183
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.94 E-value=4.4e-10 Score=97.70 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=74.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc-----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT-----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~-----~~ 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... ....+++++|... ..
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 105 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM 105 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCC
Confidence 46678999999999999999999999999999998766544221100 1224666766431 12
Q ss_pred EEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.+.|..++... ............+.++++.+++. +.....+..++|+++|.+
T Consensus 106 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 106 TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 33333332111 11233334456788899999996 555566677888888875
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.94 E-value=2.9e-09 Score=104.66 Aligned_cols=95 Identities=29% Similarity=0.327 Sum_probs=70.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+++|.||||||||+|.|++.....++..+++|++...+...+.+..+.++||||+...... -......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~----~~~~~~~~~~~ 350 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG----IDSAIASQAQI 350 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc----HHHHHHHHHHH
Confidence 35689999999999999999999877778888999987665555555567889999998632111 11123344555
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..+|++++|+|...+.+
T Consensus 351 ~~~~aD~iL~VvDa~~~~~ 369 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLT 369 (712)
T ss_pred HHHhCCEEEEEEECCCCCC
Confidence 6778999999999987653
No 185
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.94 E-value=3.1e-10 Score=94.64 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=79.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~---~~~liDt 194 (242)
.+++++..+.+|+..+|+||||+|||||++.|+|...+..+... ........++++|... .+.+.|.
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV 95 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV 95 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence 35668899999999999999999999999999998776654322 1122233445555432 3345565
Q ss_pred cccc--hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLM--LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~--~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+. ....+....+....+.++++..++..+.-.-.-.++|+++|.+
T Consensus 96 V~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRV 144 (259)
T COG4559 96 VQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRV 144 (259)
T ss_pred HHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHH
Confidence 5543 2222334445566788999999998888777788999999876
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.3e-10 Score=99.03 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=73.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------------ccceEEEEEeeCCc-e---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------------TTHEVLGVMTKADT-Q--- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------------t~~~~~~~~~~~~~-~--- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ..+..+++++|... .
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 105 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ 105 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence 46678999999999999999999999999999998766544221 10 01224566766531 1
Q ss_pred eEEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.++.|+..+.....+....+....+.++++.+++. +.....+..+|++++|++
T Consensus 106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 12333332221112233444456678889999984 566666677888888765
No 187
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4.8e-10 Score=95.75 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=76.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------cceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------THEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.....+ .....+++++... ...+.|...
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 35678899999999999999999999999999998766544321110 1234566665432 123344443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+....+....+.++++.+++.+.+...+..+++++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 138 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRV 138 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHH
Confidence 322222333445566778899999998877777777888887765
No 188
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.94 E-value=1.8e-10 Score=97.73 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=78.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-----------ceEEEEEee---CCceeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-----------HEVLGVMTK---ADTQICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-----------~~~~~~~~~---~~~~~~liD 193 (242)
.++++++++.+|.+++++||||+||||++|.|+|...++.+......+ +.-++.-+| ....+++.|
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlE 98 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLE 98 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHH
Confidence 456789999999999999999999999999999987776443221111 011111222 224667777
Q ss_pred ccccchhc------------cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNK------------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~------------~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.-+.... ...+..+..+++.++++.+++.+...-..-.+++++++.+
T Consensus 99 Nv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred HHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 76443211 1124566788999999999999988888888888877653
No 189
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.93 E-value=4.4e-10 Score=96.87 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=74.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---------------------ccceEEEEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---------------------TTHEVLGVMTK 184 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---------------------t~~~~~~~~~~ 184 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... +. ..+...+++++
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 94 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQ 94 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEec
Confidence 45678999999999999999999999999999998766544221 10 01223556665
Q ss_pred CCc---eeEEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 185 ADT---QICIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 185 ~~~---~~~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
... ..++.|...+... ..+.........+.++++.+++.+........+++++++++
T Consensus 95 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 95 SFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV 155 (252)
T ss_pred CcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH
Confidence 432 1233333322111 11223444456788899999998777667777888888775
No 190
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.93 E-value=5.6e-10 Score=95.94 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=73.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+++|..++|+|+||+|||||++.|+|...+. .|... +. ..+...++++|....
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP 95 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC
Confidence 356789999999999999999999999999999987654 33211 11 012345666654321
Q ss_pred eEEeeccccchhccC-CCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|+.-+.....+ .+..+....+..+++.+++. +.....+..++|+++|++
T Consensus 96 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 223333322211222 23345556788899999997 555555667888888765
No 191
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.93 E-value=2.6e-09 Score=95.42 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=66.5
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee------------------------CCceeEEeecccc
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPGL 197 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtpG~ 197 (242)
++++|.||||||||+|+|++... .++..|++|...+.|..+. ..-.+.++|+||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 47999999999999999998764 5788899988877766442 1125789999999
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
..... +.+....++++.+.-+|.+++|+|.+.
T Consensus 80 v~ga~-----~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAH-----EGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 64321 122334678888999999999999974
No 192
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.93 E-value=3e-10 Score=95.00 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=72.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------cceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------THEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|...... .....+++++... ..++.|...
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 94 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLR 94 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHH
Confidence 45667899999999999999999999999999998766544221111 1224566665432 123334333
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+. ....+.++++.+++.+..-..+..+|+++++++
T Consensus 95 ~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 135 (208)
T cd03268 95 LLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRL 135 (208)
T ss_pred HHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHH
Confidence 22111111 134577888999998777777777888888875
No 193
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=5.3e-10 Score=95.46 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=73.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-----------ccceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-----------TTHEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-----------t~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. .....+++++|... ..++
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 46678999999999999999999999999999998765544221 10 01234566665432 1233
Q ss_pred eeccccchhc--------cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNK--------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~--------~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.... .+.........+.++++.+++.+........++|+++|++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 3333221100 0111223345678889999998776666777888888875
No 194
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.92 E-value=5.3e-09 Score=82.90 Aligned_cols=84 Identities=14% Similarity=0.327 Sum_probs=53.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeec--CCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.++++|.+|||||||+|.|++....... ..+++|.......+... ...+.++||||... . ...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~---------~---~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK---------F---IKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH---------H---HHHHH
Confidence 4789999999999999999985422221 12344433322222222 45778999999621 1 12334
Q ss_pred HHcCcccccceeeecCCcc
Q 026174 218 SAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~ 236 (242)
.....+|.+++|+|+..++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~ 88 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGI 88 (164)
T ss_pred hhhhcCCEEEEEEECCCCc
Confidence 4456689999999997754
No 195
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.92 E-value=2.9e-09 Score=97.80 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=66.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee------------------------CCceeEEeeccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPG 196 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~liDtpG 196 (242)
.++|||.||||||||+|+|++... .+++.+++|+..+.|..+. ....+.++|+||
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999998765 4677899998877776431 012467999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
+..... ..+....+++..+.-+|.+++|+|...
T Consensus 82 l~~ga~-----~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 82 LVPGAH-----EGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cCCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 974321 112345578888999999999999974
No 196
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=6.7e-10 Score=99.35 Aligned_cols=114 Identities=12% Similarity=-0.008 Sum_probs=76.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------------------ccceEEEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------------------TTHEVLGV 181 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------------------t~~~~~~~ 181 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... .....+++
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 120 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSM 120 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEE
Confidence 4677899999999999999999999999999999876654421100 11234677
Q ss_pred EeeCCc-ee---EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 182 MTKADT-QI---CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 182 ~~~~~~-~~---~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++|... .+ ++.|...+.....+.+..+...++.++++.+++. +..-.....++|+++|.+
T Consensus 121 v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv 185 (320)
T PRK13631 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185 (320)
T ss_pred EEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH
Confidence 777532 11 2333333222222345555667788999999996 555555667888887765
No 197
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.92 E-value=6.8e-10 Score=96.01 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=74.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---------------------ccceEEEEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---------------------TTHEVLGVMTK 184 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---------------------t~~~~~~~~~~ 184 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. .....+++++|
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q 99 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 99 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEec
Confidence 35668999999999999999999999999999998765544221 10 01124566666
Q ss_pred CCc---eeEEeeccccch-hccCCCHHHHHHHHHHHHHHcCccccc-ceeeecCCcccccccC
Q 026174 185 ADT---QICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVL-MVVFDVHRHLTRFVIC 242 (242)
Q Consensus 185 ~~~---~~~liDtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~l-l~v~D~~~g~~~~~i~ 242 (242)
... ...+.|+..+.. ........+....+.++++.+++.+.. -..+..++++++++++
T Consensus 100 ~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 100 HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred CcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 432 123444443211 111233444566788899999998764 4456778888887653
No 198
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=6.9e-10 Score=94.48 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=72.8
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------ccceEEEEEeeCCc---eeEEeeccccch
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------TTHEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------t~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
++++.+.+|..++|+|+||+|||||++.|+|...+..|... +. ......+++++... ...+.|+..+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 46899999999999999999999999999998766544221 10 01234566665432 123333332211
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.............+.++++.+++.+.+......++++++|++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 138 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV 138 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH
Confidence 100001223356688899999998888888888999988875
No 199
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.91 E-value=3.8e-10 Score=93.85 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=70.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|...... .....+++++... ..++.|..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENL 94 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHH
Confidence 35668999999999999999999999999999998766544221111 1123455554321 12334444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+...... .+ ...+.++++.+++.+.....+..+++++++++
T Consensus 95 ~~~~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 136 (198)
T TIGR01189 95 HFWAAIHG---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL 136 (198)
T ss_pred HHHHHHcC---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH
Confidence 33222111 11 34577889999998776666677888887765
No 200
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=8.8e-11 Score=97.02 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=86.4
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccc-eEEEEEeeCCc---eeEEe
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTH-EVLGVMTKADT---QICIF 192 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~-~~~~~~~~~~~---~~~li 192 (242)
..++++++.+++|+.||++||||+||||.++.++|...++.|.. |...+. .-++|++|+.. .+++.
T Consensus 18 ~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~ 97 (243)
T COG1137 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVE 97 (243)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHH
Confidence 45777899999999999999999999999999999876664432 222222 33677887653 45677
Q ss_pred eccccchhccCCCHH--HHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLMLNKSGYSHK--DVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~~~~~~~~--~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|+.-........+.+ +.+..++.+++.+++.++-...-.++||++|+.+
T Consensus 98 dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~ 148 (243)
T COG1137 98 DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV 148 (243)
T ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH
Confidence 777665554443333 4455688999999999999999999999999864
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.91 E-value=6.8e-10 Score=96.69 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=72.6
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC---ceeEEeeccccchhccC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSG 203 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~ 203 (242)
..++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... ..+++.+.. ...++.|...+.....+
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g---~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---EVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC---EEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 356778999999999999999999999999999998766544322111 112222211 12233333322111123
Q ss_pred CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+..+....+..+++.+++.+.+...+..+++++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 34445555667788888888877777778888888765
No 202
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=4.5e-10 Score=93.89 Aligned_cols=111 Identities=14% Similarity=0.031 Sum_probs=70.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|.+++|+|+||+|||||++.|+|...+..|...... .....+++++... .+++.|..
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 95 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence 35678999999999999999999999999999998766554321111 0122344443221 12333333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+. .....+.++++.+++.+.....+..+++++++++
T Consensus 96 ~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl 138 (204)
T PRK13538 96 RFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRV 138 (204)
T ss_pred HHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHH
Confidence 322211111 2245678899999998766666677888888765
No 203
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.90 E-value=2e-10 Score=89.42 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=67.6
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----C-----cccceEEEEEeeCCceeEEeeccccch
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----N-----TTTHEVLGVMTKADTQICIFDTPGLML 199 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~-----~t~~~~~~~~~~~~~~~~liDtpG~~~ 199 (242)
+++++.+++|..++|+|+||+|||||+++|+|...+..+... . .......+++.+. +.+..
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~ 72 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQD---------PQLFP 72 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESS---------HCHHT
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccc---------ccccc
Confidence 467889999999999999999999999999998776544321 1 1112233444332 22211
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceee----ecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVF----DVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~----D~~~g~~~~~i 241 (242)
..+. ........+.++++.+++.+.....+ ..+++++++++
T Consensus 73 ~~tv-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl 117 (137)
T PF00005_consen 73 GLTV-RENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL 117 (137)
T ss_dssp TSBH-HHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH
T ss_pred cccc-ccccccccccccccccccccccccccccccchhhHHHHHHH
Confidence 1110 01134567889999999888777777 77888888765
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.90 E-value=6e-10 Score=107.94 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=76.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc----------------------ccceEEEEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT----------------------TTHEVLGVMT 183 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~----------------------t~~~~~~~~~ 183 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. .+...+++++
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~ 110 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIF 110 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEE
Confidence 35667999999999999999999999999999998655433211 10 0112467777
Q ss_pred eCC-----ceeEEeeccccchhc-cCCCHHHHHHHHHHHHHHcCccc---ccceeeecCCccccccc
Q 026174 184 KAD-----TQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 184 ~~~-----~~~~liDtpG~~~~~-~~~~~~~~~~~i~~~l~~~~l~d---~ll~v~D~~~g~~~~~i 241 (242)
|.. ..+++.+...+.... .+.+..+...++.++++.+++.+ .....+..+||+++|.+
T Consensus 111 Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv 177 (623)
T PRK10261 111 QEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV 177 (623)
T ss_pred eCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHH
Confidence 753 123444444432222 13455566778899999999964 45555677888888876
No 205
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.90 E-value=8e-10 Score=104.37 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=77.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc---------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT---------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t---------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .+..+++++|... .+++.|
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 98 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAE 98 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHH
Confidence 45678999999999999999999999999999998766544321 110 1234677776532 223444
Q ss_pred ccccchhcc----CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKS----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~----~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+..... ..+..+.+.++.++++.+++.+.....+..+||+++|++
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 99 NIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred HhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 443321111 123344456788999999998877777778888888875
No 206
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.89 E-value=6.7e-10 Score=102.15 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=78.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... + ......+++++|... .+.+.|+
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~ 97 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQV 97 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHH
Confidence 45678999999999999999999999999999998766544221 1 111234677766532 2334444
Q ss_pred cccchh-c---cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLN-K---SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~-~---~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+... . .........+.+.++++.+++.++....+..+||+++|++
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 98 VEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred HHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 432211 0 1111234456789999999999888888888999998875
No 207
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.89 E-value=1e-08 Score=82.05 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=57.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+++++|.+|+|||||+|.|.+.... .+..+++|.....+........+.++||||+.... .......+... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~--~~~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRP-LEERNTIEMQA--ITALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCcc-ccCCchHHHHH--HHHHH
Confidence 5789999999999999999987543 44455666655544443334578899999984321 11111111111 11112
Q ss_pred CcccccceeeecCCcc
Q 026174 221 NLFEVLMVVFDVHRHL 236 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~ 236 (242)
...+.+++|+|++...
T Consensus 78 ~~~d~~l~v~d~~~~~ 93 (168)
T cd01897 78 HLRAAVLFLFDPSETC 93 (168)
T ss_pred hccCcEEEEEeCCccc
Confidence 3457899999997653
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.89 E-value=1.2e-08 Score=83.78 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCC-HHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~i~~ 215 (242)
....++++|.+|+|||||+|.|++.. ....+..+++|+..... ..+..+.++||||+........ ..........
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF---EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE---ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45678999999999999999999864 45556666666554322 1235788999999754321111 1122222333
Q ss_pred HHHHcCcccccceeeecCCcc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.+....-.+.+++++|...+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~ 120 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPL 120 (196)
T ss_pred HHHhCccceEEEEEEecCCCC
Confidence 344333345667777766543
No 209
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.89 E-value=4.9e-10 Score=94.51 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=68.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .. ....+++++|... .+++.|
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE 94 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH
Confidence 45678899999999999999999999999999998766544221 1 00 1223566665432 122333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHc-CcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAV-NLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~-~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+...... ..+....+..+++.+ ++.+..-..+..++++++|++
T Consensus 95 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv 141 (222)
T cd03224 95 NLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQML 141 (222)
T ss_pred HHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHH
Confidence 3222111111 122344566777777 466655555666788887765
No 210
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.89 E-value=7.3e-10 Score=96.13 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=72.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----ccceEEEEEeeCCce---eEEeeccccch
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TTHEVLGVMTKADTQ---ICIFDTPGLML 199 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~~~~~~~~~~~~~~---~~liDtpG~~~ 199 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... ......++++|.... .++.|+..+..
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 106 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGL 106 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcc
Confidence 3566799999999999999999999999999999876654432211 112345666654321 12333332211
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
. ......+.++++.+++.+.....+..+||+++|++
T Consensus 107 -----~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl 142 (257)
T PRK11247 107 -----K-GQWRDAALQALAAVGLADRANEWPAALSGGQKQRV 142 (257)
T ss_pred -----c-chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 0 11245678899999998877777778888888875
No 211
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.89 E-value=5.1e-10 Score=95.02 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=72.5
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccce---EEEEEeeCCceeEEeeccccchhccC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE---VLGVMTKADTQICIFDTPGLMLNKSG 203 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~liDtpG~~~~~~~ 203 (242)
..++++++.+.+|..++|+|+||+|||||+++|+|...+..|......... .....++ ...++.|+.-+.....+
T Consensus 36 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~--~~~tv~enl~~~~~~~~ 113 (224)
T cd03220 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFN--PELTGRENIYLNGRLLG 113 (224)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCC--CCCcHHHHHHHHHHHcC
Confidence 468889999999999999999999999999999998766544322111110 0000000 12233333322222122
Q ss_pred CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
....+....+.++++.+++.+.....+..++++++|++
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 151 (224)
T cd03220 114 LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARL 151 (224)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 33444456778889999998877777788888888765
No 212
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.89 E-value=6e-10 Score=94.10 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... ....++++++... ..++
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTA 99 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCH
Confidence 46678999999999999999999999999999998766544221110 1124566665421 1122
Q ss_pred eeccccchhcc-CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~-~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+..... .....+....+.++++.+++.+..-..+..+++++++++
T Consensus 100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 23222211111 123445566788999999998877777788888888765
No 213
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=6.1e-10 Score=94.55 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=80.5
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee----CCceeEEeeccccchhcc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK----ADTQICIFDTPGLMLNKS 202 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~liDtpG~~~~~~ 202 (242)
..++++++.+..|..+||+|.||+|||||++.|.|...|+.|...-..+ +..+.. ..+.++-.|+.-+.....
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~---v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK---VAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce---EehhhhcccCCCcccchHHHHHHHHHHh
Confidence 3688999999999999999999999999999999998887665432221 111111 113445566666666667
Q ss_pred CCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 203 ~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
++..+++++.++++.+..++.+++...+...|.+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSG 151 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSG 151 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHH
Confidence 7889999999999999999999988888774433
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.88 E-value=8.4e-10 Score=96.10 Aligned_cols=114 Identities=10% Similarity=0.116 Sum_probs=71.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCce-e----EEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADTQ-I----CIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~~-~----~li 192 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +. .+....++++|.... + .+.
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 107 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRIS 107 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHH
Confidence 46678999999999999999999999999999998766544321 10 011235666664311 1 111
Q ss_pred eccccchh-ccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 193 DTPGLMLN-KSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
+...+... .......+..+.+.++++.+++. +.....+..+|++++|.+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 108 QILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 11111111 11223444556788899999994 555555567888888765
No 215
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.88 E-value=8.7e-10 Score=103.80 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=73.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHH
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK 207 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 207 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...........++.......+++.|...+.....+.+..
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~ 118 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKE 118 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHH
Confidence 46678999999999999999999999999999998766555432211111111100011122333333221111233445
Q ss_pred HHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 208 ~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+....+.++++.+++.+.+...+..++|+++|++
T Consensus 119 e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV 152 (549)
T PRK13545 119 KIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL 152 (549)
T ss_pred HHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH
Confidence 5556778899999998877777788888888875
No 216
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=9.5e-10 Score=98.63 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=75.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-----------ccceEEEEEeeCCc-e----e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-----------TTHEVLGVMTKADT-Q----I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-----------t~~~~~~~~~~~~~-~----~ 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. ..+..+++++|+.. . +
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 109 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK 109 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc
Confidence 46778999999999999999999999999999998765533211 10 01234677777632 1 1
Q ss_pred EEeeccccchhc-cCCCHHHHHHHHHHHHHHcCccc-ccceeeecCCcccccccC
Q 026174 190 CIFDTPGLMLNK-SGYSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 190 ~liDtpG~~~~~-~~~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i~ 242 (242)
.+.+........ .+....+.+.++.++++.+++.+ ........+||+++|.++
T Consensus 110 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~ 164 (327)
T PRK11308 110 KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIA 164 (327)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHH
Confidence 222222111111 12345556678899999999963 555556778888888763
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.88 E-value=1.2e-09 Score=102.51 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=81.4
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc------------cceEEEEEeeCC-----cee
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------THEVLGVMTKAD-----TQI 189 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t------------~~~~~~~~~~~~-----~~~ 189 (242)
..++++++.+.+|++++|||.||||||||.+.|+|...+..+...... ......+++|++ +.+
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 458889999999999999999999999999999998877544221111 112334455543 234
Q ss_pred EEeeccccchhccC-CCHHHHHHHHHHHHHHcCccc-ccceeeecCCcccccccC
Q 026174 190 CIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 190 ~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i~ 242 (242)
++.|...-....++ ....+.+.++.++++.+++.. ++...-+.+||+++|.||
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva 439 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH
Confidence 44444433332222 224566678999999999986 677778999999999875
No 218
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.87 E-value=1e-09 Score=93.91 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=73.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---cc------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---TT------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .. .....+++++... ..++.|
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 96 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE 96 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH
Confidence 46678999999999999999999999999999998766544211 1 00 1123556665421 123333
Q ss_pred ccccchhc--------cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNK--------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~--------~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.... .+.........+.++++.+++.+..-..+..+++++++++
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 97 NLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 33221110 0111233456788899999998776666777888888775
No 219
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.87 E-value=3.9e-09 Score=91.04 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=63.1
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
...-.+...+.++|.+|+|||||||+|.+.....++..+.++...+.-....+...+.++||||+.... +...+.
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~-----~~D~~~ 107 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK-----DKDAEH 107 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch-----hhhHHH
Confidence 334456778889999999999999999965444444333333222222233445788999999997532 122233
Q ss_pred HHHHHHHcCcccccceeeecCCc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
...+.+.+.-.|++++++|..+.
T Consensus 108 r~~~~d~l~~~DLvL~l~~~~dr 130 (296)
T COG3596 108 RQLYRDYLPKLDLVLWLIKADDR 130 (296)
T ss_pred HHHHHHHhhhccEEEEeccCCCc
Confidence 44455666666788888888664
No 220
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.87 E-value=1.5e-08 Score=97.05 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=60.2
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC-CCcccceEEEEEeeCCceeEEeeccccchhccC-CCHHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRV 213 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~i 213 (242)
+.-..+++++|.+|+||||++|.|+|.....++.. +++|+ .........+..+.++||||+...... ....++...+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 44456789999999999999999999876666554 45444 322222234567899999999754221 1122333444
Q ss_pred HHHHHHcCcccccceeeec
Q 026174 214 ESAWSAVNLFEVLMVVFDV 232 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~ 232 (242)
..++...+ .|++++|...
T Consensus 194 k~~Lsk~g-pDVVLlV~RL 211 (763)
T TIGR00993 194 KKFIKKNP-PDIVLYVDRL 211 (763)
T ss_pred HHHHhcCC-CCEEEEEEeC
Confidence 44444444 4677777544
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.87 E-value=9.3e-10 Score=104.37 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=76.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc--ceeecCCC-------------------------Cc-------
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK--VAAVSRKT-------------------------NT------- 173 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~--~~~~~~~~-------------------------~~------- 173 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|.. .+..|... +.
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 94 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEV 94 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccch
Confidence 456789999999999999999999999999999985 34333211 00
Q ss_pred -----------ccceEEEEEeeCC-c---eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 174 -----------TTHEVLGVMTKAD-T---QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 174 -----------t~~~~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..+++++|.. . ..++.|...+.....+.+..+.+.++.++++.+++.+.....+..+||+++
T Consensus 95 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 174 (520)
T TIGR03269 95 DFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174 (520)
T ss_pred hhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHH
Confidence 0112356666641 1 122333333222222344455567889999999998877777788899988
Q ss_pred ccc
Q 026174 239 FVI 241 (242)
Q Consensus 239 ~~i 241 (242)
|++
T Consensus 175 qrv 177 (520)
T TIGR03269 175 QRV 177 (520)
T ss_pred HHH
Confidence 876
No 222
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.7e-09 Score=93.05 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=72.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C--------cccceEEEEEeeCCc---ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N--------TTTHEVLGVMTKADT---QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~--------~t~~~~~~~~~~~~~---~~ 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... + ......+++++|... ..
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNL 97 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCC
Confidence 35678999999999999999999999999999998642 233211 1 111234667776532 23
Q ss_pred EEeeccccchhccC--CCHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSG--YSHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~--~~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
++.|+..+...... .+..+..+.+.++++.+++.+ .....+..++|+++|++
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 44555433221111 123444567888999999854 33445566788887765
No 223
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.86 E-value=1.1e-09 Score=93.76 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=72.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---c---ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---T---TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~---t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... + . ......+++++... ...+.|..-
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~ 94 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIA 94 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHH
Confidence 45678899999999999999999999999999998655433211 0 0 11123556655421 112222222
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.......+.+.++++.+++.+........++++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl 139 (237)
T TIGR00968 95 FGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRV 139 (237)
T ss_pred hHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH
Confidence 111111223334456678899999998776666677888887765
No 224
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.86 E-value=1.2e-09 Score=92.42 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=69.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-------------ccceEEEEEeeCCc-----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-------------TTHEVLGVMTKADT-----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-------------t~~~~~~~~~~~~~-----~~ 189 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... ..+...++++|... ..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 99 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM 99 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC
Confidence 4667899999999999999999999999999999876654422110 11234566665431 12
Q ss_pred EEeeccccchhccCCCH-HHHHHH-HHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSH-KDVKVR-VESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~-~~~~~~-i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|+..+......... ...... +.++++.+++. +.....+..++++++|++
T Consensus 100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 23333322111111111 121222 35788888885 455555677888888765
No 225
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.85 E-value=1.4e-09 Score=98.58 Aligned_cols=109 Identities=8% Similarity=0.103 Sum_probs=73.8
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C------------cccceEEEEEeeCCc---eeEEee
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N------------TTTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~------------~t~~~~~~~~~~~~~---~~~liD 193 (242)
++++.+.+|..++|+|+||+|||||+++|+|...+..|... + .......++++|... .+++.|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 56889999999999999999999999999998766544221 0 011234566666432 223444
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+.... ....+....+.++++.+++.+........+||+++|++
T Consensus 95 nl~~~~~~--~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRv 140 (354)
T TIGR02142 95 NLRYGMKR--ARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV 140 (354)
T ss_pred HHHHHhhc--cChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 44332111 12233455688999999998877777788899988876
No 226
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.1e-09 Score=106.00 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=77.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-----------ccceEEEEEeeCCc-----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-----------TTHEVLGVMTKADT-----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-----------t~~~~~~~~~~~~~-----~~ 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. .....+++++|... ..
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~ 418 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC
Confidence 46788899999999999999999999999999998765543321 11 01234677877531 12
Q ss_pred EEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc-cccceeeecCCcccccccC
Q 026174 190 CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 190 ~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i~ 242 (242)
++.|...+.....+. ...+....+.++++.+++. +........+||+++|+++
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~ 473 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC 473 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence 333443322212222 2344557788999999995 5666667889999988763
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.6e-09 Score=102.39 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=76.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce--eecCCC--Cc-----c----cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKT--NT-----T----THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~~~~~~--~~-----t----~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. . .+...++++|... .+++
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 99 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSV 99 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcH
Confidence 46678999999999999999999999999999998664 333221 11 0 1234677777532 2234
Q ss_pred eeccccchhcc--C-CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKS--G-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~--~-~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+..... + .+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 100 LENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred HHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 44443321111 1 23344556788999999998777777788898988875
No 228
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.3e-09 Score=94.76 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=73.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.....+ .....+++++... ..++.|.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVREL 105 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHH
Confidence 35668999999999999999999999999999998765544321111 1123566665421 1223333
Q ss_pred cccchh-cc---CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLN-KS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~-~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+... .. ..........+.++++.+++.+.+......++|++++++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 106 VAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHH
Confidence 322110 00 011123345678899999998776666777888888765
No 229
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.85 E-value=2.3e-09 Score=93.63 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=72.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----cceEEEEEeeCCce-----eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----THEVLGVMTKADTQ-----ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----~~~~~~~~~~~~~~-----~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. +....+++++.... ..+.++.
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 101 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVV 101 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhhe
Confidence 35667999999999999999999999999999998766544322 111 11235666654311 1122222
Q ss_pred ccc-hh---ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLM-LN---KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~-~~---~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-+. .. ............+.++++.+++.+.....+..++|++++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 102 MMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRV 151 (272)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 110 00 00111223345677889999998777666777888888765
No 230
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.84 E-value=1.3e-09 Score=91.00 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=67.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|.+++|+|+||+|||||++.|+|...+..|...... .....+++++... ..++.|..
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 94 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence 35678999999999999999999999999999998766544221110 1123444443321 11222222
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+... ......+.++++.+++.+.....+..++|+++|.+
T Consensus 95 ~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 134 (201)
T cd03231 95 RFWHA------DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV 134 (201)
T ss_pred Hhhcc------cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHH
Confidence 22110 01235678888999998766656667788887765
No 231
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.84 E-value=1e-09 Score=92.78 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=70.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----c-ceEEEEEeeCCc---eeEEeeccccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----T-HEVLGVMTKADT---QICIFDTPGLM 198 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----~-~~~~~~~~~~~~---~~~liDtpG~~ 198 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... . ....+++++... ..++.|..-+.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH 94 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence 35667899999999999999999999999999998766544321111 0 123455554321 12233333221
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
....+.+ ...+.++++.+++.+.....+..+++++++++
T Consensus 95 ~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv 133 (223)
T TIGR03740 95 TTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRL 133 (223)
T ss_pred HHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHH
Confidence 1111111 24577888999998877776777888887765
No 232
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.8e-09 Score=102.12 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=77.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . .+...++++|... ..++.|
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 99 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLE 99 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHH
Confidence 46678999999999999999999999999999998766544321 10 0 1124677776532 223444
Q ss_pred ccccchh----ccC---CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLN----KSG---YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~----~~~---~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+... ..+ .+..+...++.++++.+++.+.....+..+||+++|++
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 100 NLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 4332110 011 12334556788999999998877777788999988876
No 233
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.83 E-value=1.5e-09 Score=93.76 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=73.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. .....++++++... ..++.|.
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDV 95 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHH
Confidence 46678999999999999999999999999999998766544221 10 01123566665431 1233444
Q ss_pred cccch-hc---cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLML-NK---SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~-~~---~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-+.. .. ......+....+.++++.+++.+.....+..+++++++++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 146 (256)
T TIGR03873 96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRV 146 (256)
T ss_pred HHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 32211 00 0111223345678899999998877777778888888765
No 234
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=1.3e-09 Score=94.16 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=73.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. ......+++++... ..++.|+
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 96 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVREL 96 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHH
Confidence 35667899999999999999999999999999998665544221 11 11223666666432 1233333
Q ss_pred cccchh----ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLN----KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~----~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+... ..+.........+.++++.+++.+.....+..+||++++++
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 97 VAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRA 147 (255)
T ss_pred HHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHH
Confidence 322100 01111233345678889999998777777788888888875
No 235
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=2e-09 Score=90.50 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=69.6
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc------------ccceEEEEEeeCCc---eeEEee
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT------------TTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~------------t~~~~~~~~~~~~~---~~~liD 193 (242)
++++.+.+ ..++|+|+||+|||||++.|+|...+..|... +. ......++++|... ..++.|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 67899999 99999999999999999999998765544221 10 01123566665431 122333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.... ......+..+.++++.+++.+.....+..++|++++++
T Consensus 95 ~l~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 140 (214)
T cd03297 95 NLAFGLKR--KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRV 140 (214)
T ss_pred HHHHHHhh--CCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHH
Confidence 32221111 12223345688899999998776666777888888765
No 236
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=8.8e-10 Score=92.36 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=68.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------cceEEEEEeeCCc---eeEEeecccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------THEVLGVMTKADT---QICIFDTPGL 197 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------~~~~~~~~~~~~~---~~~liDtpG~ 197 (242)
.++++++.+++|.+++|+|+||+|||||++.|+|...+..|...... .....+++.+... ..++.|...+
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence 35678999999999999999999999999999998765544321111 1122344443221 1223333322
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.....+.. ...+.++++.+++.+........++++++|++
T Consensus 97 ~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 136 (207)
T PRK13539 97 WAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRV 136 (207)
T ss_pred HHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHH
Confidence 11111111 23478889999998766666667888888765
No 237
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.8e-09 Score=93.90 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=74.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|... +. .....++++++... ...+.|.
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 101 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQEL 101 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHH
Confidence 35678999999999999999999999999999998766544221 10 11123566666532 1233333
Q ss_pred cccch-hcc---CCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 195 PGLML-NKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 195 pG~~~-~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
..+.. ... ....+.....+.++++.+++.+.....+..++++++|+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 102 VARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred HHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH
Confidence 32210 000 0011233456788999999988777778888888888763
No 238
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.83 E-value=4.2e-09 Score=93.19 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=74.6
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
..+++----|++||.||+||||||+.+...+ +.+++.++||.....|++... ...+.+.|.||++...+.- .-
T Consensus 153 ~LELKllADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G-----~G 226 (369)
T COG0536 153 RLELKLLADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG-----VG 226 (369)
T ss_pred EEEEeeecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccC-----CC
Confidence 3444444558999999999999999999865 469999999999999987753 3467899999998654321 11
Q ss_pred HHHHHHHHcCcccccceeeecCCc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
--.++|.++.-+.++++|+|.+.-
T Consensus 227 LG~~FLrHIERt~vL~hviD~s~~ 250 (369)
T COG0536 227 LGLRFLRHIERTRVLLHVIDLSPI 250 (369)
T ss_pred ccHHHHHHHHhhheeEEEEecCcc
Confidence 234778888888999999998753
No 239
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.83 E-value=3.5e-08 Score=86.83 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=68.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEE--EEEeeCCceeEEeeccccchhccCCCHHHHHHH
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL--GVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
.-.+...|++||++|+|||||||.|++.... ..+..+.|.+.+. +.+ +.+..+.+.||.||+..+ .-.....
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~L-psg~~vlltDTvGFisdL----P~~LvaA 247 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHL-PSGNFVLLTDTVGFISDL----PIQLVAA 247 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccC-CCCcEEEEeechhhhhhC----cHHHHHH
Confidence 3455677899999999999999999964322 3333444444332 223 234566788999997543 2344677
Q ss_pred HHHHHHHcCcccccceeeecCCcc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
+...++.+--+|++++|.|++.+.
T Consensus 248 F~ATLeeVaeadlllHvvDiShP~ 271 (410)
T KOG0410|consen 248 FQATLEEVAEADLLLHVVDISHPN 271 (410)
T ss_pred HHHHHHHHhhcceEEEEeecCCcc
Confidence 888999999999999999998864
No 240
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.83 E-value=1.9e-09 Score=92.90 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=73.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|.... .|... +. ......+++++... ...+.++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 46778999999999999999999999999999997642 23211 10 01123566665431 1233343
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+... ...+..+....+.++++.+++.+..-..+..++++++|++
T Consensus 90 l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 135 (248)
T PRK03695 90 LTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRV 135 (248)
T ss_pred HHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 333211 1122334456788999999998877777778888888765
No 241
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.83 E-value=2e-09 Score=101.71 Aligned_cols=114 Identities=9% Similarity=0.075 Sum_probs=77.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----------ccceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----------TTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----------t~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ..+..+++++|... ..++.|
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 98 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAE 98 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHH
Confidence 3567899999999999999999999999999999876654432110 01234677776532 123444
Q ss_pred ccccchh--ccC-CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLN--KSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~--~~~-~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+... ..+ .+..+...++.++++.+++.+.....+..+||+++|++
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 99 NLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHH
Confidence 4433211 111 23445567788999999998776667778889988876
No 242
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=1.4e-09 Score=91.66 Aligned_cols=111 Identities=11% Similarity=0.071 Sum_probs=69.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------cceEEEEEeeCCc---eeEEeecccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------THEVLGVMTKADT---QICIFDTPGL 197 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------~~~~~~~~~~~~~---~~~liDtpG~ 197 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|.....+ .....+++++... ...+.|..-+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHF 105 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHH
Confidence 35667999999999999999999999999999998766544321111 1122455554321 1122222211
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.....+ ......+.++++.+++.+.....+..+++++++.+
T Consensus 106 ~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 146 (214)
T PRK13543 106 LCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRL 146 (214)
T ss_pred HHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHH
Confidence 111111 11234567888899988776666777888888765
No 243
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.1e-09 Score=92.67 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCCC--Cc----------ccceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKT--NT----------TTHEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~~--~~----------t~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+. .|... +. ......++++|...
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFP 98 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCC
Confidence 466789999999999999999999999999999986542 23211 10 01124566666432
Q ss_pred eeEEeeccccchhccCC--CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 188 QICIFDTPGLMLNKSGY--SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~--~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
..++.|+..+....... +..+....+.++++.+++.. ........++++++|++
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 99 HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 12333443322111111 23444566788888888743 33444566788888765
No 244
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.4e-09 Score=92.78 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=70.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCC-----CC-------cccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRK-----TN-------TTTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~-----~~-------~t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+++|..++|+|+||+|||||+++|+|... +..|.. .. .......++++|....
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 3567899999999999999999999999999999854 122211 10 0112346666664321
Q ss_pred eEEeeccccchhcc-CCCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~-~~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|...+..... +.+..+..+.+.++++.+++. +..-.....++++++|++
T Consensus 108 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 108 MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 23333332221111 233444556788889998874 334444566788888765
No 245
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.2e-09 Score=92.97 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=70.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. ......+++++....
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP 106 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc
Confidence 35678999999999999999999999999999997643 223111 00 112345666654321
Q ss_pred eEEeeccccchhccCCCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|+..+.....+.+..+....+.++++.+++. +.....+..++|+++|++
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 107 MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 23333333222222333444455678888988874 233444566777777765
No 246
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.82 E-value=1.2e-08 Score=80.56 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=56.6
Q ss_pred EEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcc
Q 026174 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223 (242)
Q Consensus 144 lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~ 223 (242)
|+|.+|||||||+|.+.+.. ...+..+++|.......+...+..+.++||||+.... ..+... ......+.. .-.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~--~~~~~~~~~-~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLS-PYSEDE--KVARDFLLG-EKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccC-CCChhH--HHHHHHhcC-CCC
Confidence 57999999999999999975 3456667777765544444444578899999985321 111111 111222222 567
Q ss_pred cccceeeecCCc
Q 026174 224 EVLMVVFDVHRH 235 (242)
Q Consensus 224 d~ll~v~D~~~g 235 (242)
+.+++|+|..+.
T Consensus 76 d~vi~v~d~~~~ 87 (158)
T cd01879 76 DLIVNVVDATNL 87 (158)
T ss_pred cEEEEEeeCCcc
Confidence 899999998764
No 247
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2e-09 Score=93.11 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=70.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+ ..|... +. ......+++++...
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 35668999999999999999999999999999997642 223111 10 01123566665422
Q ss_pred eeEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCcccccccC
Q 026174 188 QICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i~ 242 (242)
..++.|+..+.....+. +.....+.+.++++.+++. +.....+..++|+++|+++
T Consensus 99 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 99 TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 12333333222111121 2344456778888888874 3444555667888877653
No 248
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.1e-09 Score=96.41 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce----eecCC--CCc-----c-------cceEEEEEeeCCce-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA----AVSRK--TNT-----T-------THEVLGVMTKADTQ- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~----~~~~~--~~~-----t-------~~~~~~~~~~~~~~- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|.. .+. + +...+++++|+...
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 101 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTS 101 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhh
Confidence 46778999999999999999999999999999997642 22211 010 0 11246777775321
Q ss_pred eEEeeccc----cchhcc-CCCHHHHHHHHHHHHHHcCccc---ccceeeecCCccccccc
Q 026174 189 ICIFDTPG----LMLNKS-GYSHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG----~~~~~~-~~~~~~~~~~i~~~l~~~~l~d---~ll~v~D~~~g~~~~~i 241 (242)
+.-.-+.+ .....+ +....+..+.+.++++.+++.+ .+-.....+||+++|.+
T Consensus 102 l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 102 LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 11111111 111111 2344556678899999999974 33445567888888875
No 249
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.81 E-value=2.3e-09 Score=91.62 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=67.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc--ceeecCCC--Cc--------c-cceEEEEEeeCCce---eEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK--VAAVSRKT--NT--------T-THEVLGVMTKADTQ---ICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~--~~~~~~~~--~~--------t-~~~~~~~~~~~~~~---~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|.. .+..|... +. . .....++++|.... .++
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 94 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSN 94 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCH
Confidence 356789999999999999999999999999999983 34333221 10 0 01124555554321 112
Q ss_pred eeccccchhcc-------CCCHHHHHHHHHHHHHHcCcc-cccceeee-cCCccccccc
Q 026174 192 FDTPGLMLNKS-------GYSHKDVKVRVESAWSAVNLF-EVLMVVFD-VHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~-------~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D-~~~g~~~~~i 241 (242)
.|...+..... ..+..+..+.+.++++.+++. +.....+. .+|++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 95 LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 22221111110 012233456788899999997 45455555 3778887765
No 250
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.9e-09 Score=97.58 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=71.3
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------------ccceEEEEEeeCCc---eeEEee
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------------TTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------------t~~~~~~~~~~~~~---~~~liD 193 (242)
++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......++++|... .+++.|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 4688999999999999999999999999999876654422110 11223556665421 122333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+..+.. . ......+.++++.+++.+........+||+++|+++
T Consensus 96 nl~~~~-----~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRva 138 (352)
T PRK11144 96 NLRYGM-----A-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVA 138 (352)
T ss_pred HHHhhh-----h-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH
Confidence 332211 1 122456888999999988877778889999988763
No 251
>PRK04213 GTP-binding protein; Provisional
Probab=98.81 E-value=2.3e-08 Score=82.75 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCH---HHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVES 215 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~i~~ 215 (242)
...++++|.+|||||||+|.|.+... .++..+++|+.... ... ..+.++||||+.... +.+. +..+.....
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~--~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDW--GDFILTDLPGFGFMS-GVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eee--cceEEEeCCcccccc-ccCHHHHHHHHHHHHH
Confidence 46789999999999999999998763 35566777765432 111 257899999974221 2221 122222223
Q ss_pred HHH-HcCcccccceeeecCC
Q 026174 216 AWS-AVNLFEVLMVVFDVHR 234 (242)
Q Consensus 216 ~l~-~~~l~d~ll~v~D~~~ 234 (242)
++. .....+++++|+|..+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHhhhhhheEEEEEEeCcc
Confidence 332 3445678888999864
No 252
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.7e-09 Score=100.53 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=76.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc---------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT---------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t---------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .+...++++|... ..++.|
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 92 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMD 92 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHH
Confidence 46678999999999999999999999999999998766544321 110 1234677776532 123444
Q ss_pred ccccch-hccC--CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLML-NKSG--YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~-~~~~--~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.. ...+ .+..+....+.++++.+++.+.....+..+||+++|++
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 143 (491)
T PRK10982 93 NMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMI 143 (491)
T ss_pred HhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 433211 1111 13344456788899999998777767788899988875
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.80 E-value=2.2e-09 Score=91.06 Aligned_cols=112 Identities=9% Similarity=-0.028 Sum_probs=69.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....+++++.... ..+.|+.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl 101 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL 101 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHH
Confidence 46678999999999999999999999999999998665544221111 12345666654221 1233333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.+........ .....+.++++.+++. +.....+..+++++++++
T Consensus 102 ~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 146 (225)
T PRK10247 102 IFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRI 146 (225)
T ss_pred HhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH
Confidence 2211111111 1234567889999986 344455566777777765
No 254
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.80 E-value=2.8e-09 Score=91.88 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=69.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------------c----ceEEEEEeeCCce-
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------------T----HEVLGVMTKADTQ- 188 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------------~----~~~~~~~~~~~~~- 188 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... + ....+++++....
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDG 98 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccc
Confidence 5667999999999999999999999999999998766544221100 0 1235666664311
Q ss_pred e----EEeeccccch-hccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 189 I----CIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~----~liDtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
+ .+.++..... .............+.++++.+++. +.....+..++|+++|++
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 99 LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 1 1112221100 001111223346778899999996 455556677888888765
No 255
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.80 E-value=3.2e-09 Score=100.54 Aligned_cols=110 Identities=9% Similarity=0.065 Sum_probs=74.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc---------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT---------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t---------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. +...+++++|... ..++.|
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 105 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKE 105 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHH
Confidence 45678999999999999999999999999999998766544321 110 1123667776532 122333
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+... ...+.++++.++++.+++.+.....+..+||+++|++
T Consensus 106 ~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 149 (510)
T PRK15439 106 NILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIV 149 (510)
T ss_pred Hhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHH
Confidence 3322111 1233456788899999998877777788899988876
No 256
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.80 E-value=3.2e-09 Score=91.89 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=71.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cc---------cceEEEEEeeCCce
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TT---------THEVLGVMTKADTQ 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t---------~~~~~~~~~~~~~~ 188 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... + .. .....+++++....
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRD 100 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCccc
Confidence 45678999999999999999999999999999998766544221 1 00 01236677665321
Q ss_pred -----eEEeeccccchhccC-CCHHHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 189 -----ICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 -----~~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
.++.++......... ....+....+.++++.+++.+ ..-.....++|+++|++
T Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 101 GLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred ccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 111222211111111 122344567788999999863 55555677888888765
No 257
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.80 E-value=8.3e-09 Score=86.54 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=56.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceee------------------------------cCCCCcccceEEEEEeeCCceeE
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADTQIC 190 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 190 (242)
+++++|.+|+|||||++.|++...... ....+.|+......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 378999999999999999975321111 01145555554444545556788
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
++||||... . ...+...+..+|.+++|+|+..+..
T Consensus 81 liDTpG~~~---------~---~~~~~~~~~~ad~~llVvD~~~~~~ 115 (208)
T cd04166 81 IADTPGHEQ---------Y---TRNMVTGASTADLAILLVDARKGVL 115 (208)
T ss_pred EEECCcHHH---------H---HHHHHHhhhhCCEEEEEEECCCCcc
Confidence 999999621 1 1223445667899999999988753
No 258
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.80 E-value=3.8e-09 Score=89.57 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=67.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----cceEEEEEeeCCce-----eEEeeccccchh----
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----THEVLGVMTKADTQ-----ICIFDTPGLMLN---- 200 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----~~~~~~~~~~~~~~-----~~liDtpG~~~~---- 200 (242)
.+.+|..++|+|+||+|||||+++|+|...+..|.....+ .....+++++.... .++.|+.-+...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 4578999999999999999999999998766554322111 12346666654321 122233211100
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
....+.......+.++++.+++.+.....+..+++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 122 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRV 122 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHH
Confidence 00112223345688899999998877767777888888875
No 259
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.1e-09 Score=91.68 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=69.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+. .|... +. ..+..+++++|....
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 356789999999999999999999999999999976542 22111 10 012346677765321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|+..+.....+. ........+.++++.+++. +....-...++|+++|++
T Consensus 102 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 102 MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH
Confidence 2333433222111121 2334456678888888763 333444566888888765
No 260
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.79 E-value=1.8e-09 Score=102.59 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=69.6
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc---------ccceEEEEEeeCCc--eeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT---------TTHEVLGVMTKADT--QICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~---------t~~~~~~~~~~~~~--~~~liDtpG~ 197 (242)
++++++.+++|..++++|+||+|||||+|.|+|...+..|..... ..+...++++|+.. ..++.|+.-+
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~ 430 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRL 430 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhc
Confidence 566799999999999999999999999999999877765543211 12246788887643 2245555444
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCcccccccC
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVIC 242 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i~ 242 (242)
..+ ..+ ++++.++++..++.+.+... -..+||+++|+++
T Consensus 431 g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 431 GRP--DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred cCC--CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 221 112 23455666666665433221 1347888888764
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=8.7e-10 Score=88.98 Aligned_cols=113 Identities=8% Similarity=-0.005 Sum_probs=75.2
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccc----------eEEEEEeeCCc--eeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH----------EVLGVMTKADT--QICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~----------~~~~~~~~~~~--~~~liDt 194 (242)
..++++++.+.+|..+++.||||+|||||++.++....++.|.....+.. .+++|+-|.+. .-++.|+
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDN 96 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDN 96 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhc
Confidence 45778899999999999999999999999999999888776654333222 11222222221 1245666
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccc-cceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEV-LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~-ll~v~D~~~g~~~~~i 241 (242)
.-|....+.... ....+.++++.+++.+. +...+-.++|+++|.+
T Consensus 97 lifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri 142 (223)
T COG4619 97 LIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRI 142 (223)
T ss_pred cccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHH
Confidence 655443332211 24567889999999874 4455566888888765
No 262
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.78 E-value=1.7e-09 Score=90.09 Aligned_cols=109 Identities=9% Similarity=0.035 Sum_probs=68.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc-------ccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT-------TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +. ......+++++... ..++.|..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~ 95 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENC 95 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHH
Confidence 46678999999999999999999999999999998766544221 11 11123555554321 12333333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.... .. ....+.++++.+++.+.....+..+++++++++
T Consensus 96 ~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv 136 (200)
T PRK13540 96 LYDIHF---SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQV 136 (200)
T ss_pred HHHHhc---Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHH
Confidence 221100 11 124678888888887765555566777777765
No 263
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.77 E-value=3.7e-09 Score=92.48 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=71.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee--------ecCCC--Cc--------ccceEEEEEeeCCc--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--------VSRKT--NT--------TTHEVLGVMTKADT-- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~--------~~~~~--~~--------t~~~~~~~~~~~~~-- 187 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+. .|... +. ......++++|...
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~ 95 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA 95 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCC
Confidence 356789999999999999999999999999999986654 23211 10 01123456665432
Q ss_pred -eeEEeeccccchhcc----CCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 -QICIFDTPGLMLNKS----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 -~~~liDtpG~~~~~~----~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+++.|+..+..... +....+....+.++++.+++.+..-..+..++|++++++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 123444432211000 111123345678899999998776666677888888765
No 264
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.77 E-value=3.3e-09 Score=95.24 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=72.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee---ecCCC--Ccc------------cceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKT--NTT------------THEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---~~~~~--~~t------------~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+. .|... +.. +...+++++|+..
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l 110 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSL 110 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhc
Confidence 356789999999999999999999999999999987553 23111 110 1124677777642
Q ss_pred --eeEEeeccccchhcc-CCCHHHHHHHHHHHHHHcCcccc---cceeeecCCccccccc
Q 026174 188 --QICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEV---LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 --~~~liDtpG~~~~~~-~~~~~~~~~~i~~~l~~~~l~d~---ll~v~D~~~g~~~~~i 241 (242)
.+.+.++.......+ +....+....+.++++.+++.+. +-.....+||+++|.+
T Consensus 111 ~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 111 NPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 112222221111111 23455566788889999998752 2334566788888765
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.76 E-value=2.7e-09 Score=92.26 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=70.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCcee-EEeeccccchhccCCCH
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI-CIFDTPGLMLNKSGYSH 206 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~liDtpG~~~~~~~~~~ 206 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... ....++++|..... .+-.+..-.... ..
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-~~~i~~v~q~~~~~~~l~~~~~~~~~~---~~ 94 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-KLRIGYVPQKLYLDTTLPLTVNRFLRL---RP 94 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-ccCEEEeccccccccccChhHHHHHhc---cc
Confidence 35667899999999999999999999999999998766555332111 22456666643211 000111100000 00
Q ss_pred HHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 207 ~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
......+.++++.+++.+.+...+..+|+++++++
T Consensus 95 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv 129 (251)
T PRK09544 95 GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV 129 (251)
T ss_pred cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH
Confidence 01124567889999998877777777888888765
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.76 E-value=5.1e-09 Score=90.45 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=66.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce----eecCCC--Ccc------cceEEEEEeeCCce-eEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKT--NTT------THEVLGVMTKADTQ-ICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~----~~~~~~--~~t------~~~~~~~~~~~~~~-~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+ ..|... +.. +...++++++.... +.-..+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~ 97 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHT 97 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcccc
Confidence 46678999999999999999999999999999998765 433221 111 11235666654321 110001
Q ss_pred c----ccchhccCCCHHHHHHHHHHHHHHcCccc---ccceeeecCCccccccc
Q 026174 195 P----GLMLNKSGYSHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 p----G~~~~~~~~~~~~~~~~i~~~l~~~~l~d---~ll~v~D~~~g~~~~~i 241 (242)
. -......+... ....+.++++.+++.+ .+-..+..++++++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 98 MHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred HHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 1 00001111111 2356788899999876 33444566777777765
No 267
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=3.9e-09 Score=90.50 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=69.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCcee--EEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQI--CIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~--~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... ......++++|....+ .+.|+.
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNI 97 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHH
Confidence 3567899999999999999999999999999999866554422110 1123456666643211 122222
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.+..... . .....+.++++.+++. +........++|+++|++
T Consensus 98 ~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 140 (241)
T PRK14250 98 EYGPMLK--G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRV 140 (241)
T ss_pred hcchhhc--C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 1111100 1 1134677888999996 455566677888888765
No 268
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.76 E-value=3.3e-09 Score=100.65 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=74.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC---c-----c---------cceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN---T-----T---------THEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~---~-----t---------~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... . + ....+++++|...
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 378 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC
Confidence 477788999999999999999999999999999987654433211 0 0 0123677776532
Q ss_pred eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCccc-----ccceeeecCCcccccccC
Q 026174 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFE-----VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d-----~ll~v~D~~~g~~~~~i~ 242 (242)
..++.|..-+.... ..+....+..+.++++.+++.+ .....+..+||+++|+++
T Consensus 379 ~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 379 HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 12233333221111 1233334567888999999964 455667788888888763
No 269
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.76 E-value=2.2e-09 Score=90.46 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=36.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~ 169 (242)
++++++.+++|..++|+|+||+|||||++.|+|...+..|.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 56789999999999999999999999999999987665554
No 270
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=5.4e-09 Score=89.80 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc---eeecCCC--C---c-----ccceEEEEEeeCCce--eEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV---AAVSRKT--N---T-----TTHEVLGVMTKADTQ--ICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~---~~~~~~~--~---~-----t~~~~~~~~~~~~~~--~~li 192 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... +..|... + . ..+..+++++|.... .++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~ 96 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY 96 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence 4667899999999999999999999999999999752 2333211 0 0 112346777765321 1233
Q ss_pred eccccchhccCC--CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 193 DTPGLMLNKSGY--SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~~~~~--~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
|+..+.....+. ........+.++++.+++.+ ........+++++++++
T Consensus 97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH
Confidence 333221111111 12334456788899999853 33344556778887765
No 271
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.76 E-value=3e-09 Score=113.38 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=85.2
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDt 194 (242)
..++++++.+++|+.++|+|+||+|||||++.|+|...+..|.....+ .+..+++++|.+. .+++.|.
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 367888999999999999999999999999999998776655332111 1234788877542 2344555
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.-+.....+.+.++.++.+.++++.+++.+.....+..++|+++|+++
T Consensus 2033 L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLs 2080 (2272)
T TIGR01257 2033 LYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLS 2080 (2272)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence 444333445555666677889999999998888888889999998763
No 272
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1e-08 Score=92.05 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC------------------ceeEEeeccccchh
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------------TQICIFDTPGLMLN 200 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~liDtpG~~~~ 200 (242)
+..+||||.||||||||+|+|+... ......|++|.....|.++..+ ..+.++|..|+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4578999999999999999999877 6688999999998877755321 14579999999865
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
.+.- +---.++|..++-.|.+.+|+|++.
T Consensus 81 As~G-----eGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 ASKG-----EGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cccC-----CCcchHHHHhhhhcCeEEEEEEecC
Confidence 4421 1224578889999999999999874
No 273
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=3.9e-09 Score=91.91 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=69.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. ..+..++++++....+
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 35668999999999999999999999999999997643 333211 10 1123456666653211
Q ss_pred -EEeeccccchhccCC--CHHHHHHHHHHHHHHcCcccc----cceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY--SHKDVKVRVESAWSAVNLFEV----LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~--~~~~~~~~i~~~l~~~~l~d~----ll~v~D~~~g~~~~~i 241 (242)
++.|+..+.....+. +..+....+.++++.+++.+. .-..+..++|+++|++
T Consensus 114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 233333221111121 233445667888999998642 2234556777777765
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.75 E-value=4.4e-09 Score=99.36 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=74.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc---------cceEEEEEeeCCc------eeEE
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT---------THEVLGVMTKADT------QICI 191 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t---------~~~~~~~~~~~~~------~~~l 191 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +.. .+..+++++|... .+++
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv 347 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcH
Confidence 6788899999999999999999999999999998765544321 100 1124677777531 1233
Q ss_pred eeccccchh-cc----C-CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 192 FDTPGLMLN-KS----G-YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~-~~----~-~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.|...+... .. + .+..+....+.++++.+++. +.....+..+||+++|++
T Consensus 348 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH
Confidence 333322110 00 1 12233456788999999995 567777788899988875
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.75 E-value=4.6e-09 Score=99.87 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=74.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-----------cceEEEEEeeCCc-----ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-----------THEVLGVMTKADT-----QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-----------~~~~~~~~~~~~~-----~~ 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... ..|... +.. .+..+++++|... ..
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 5788899999999999999999999999999999763 333211 100 0234677777531 12
Q ss_pred EEeeccccchhcc--CCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKS--GYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~--~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+..... ..+..+.+..+.++++.+++. +.....+..+||+++|++
T Consensus 380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 3444433221111 123344456788999999996 455666778888888876
No 276
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=4.7e-09 Score=90.44 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=67.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... +..|... +. ......++++|....+
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 3566899999999999999999999999999999742 1222110 10 1123466676653211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCcccc----cceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFEV----LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d~----ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+. ......+.+..+++.+++.+. +......++|+++|++
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 101 KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 233333221111122 223445677888888888542 2233455777777765
No 277
>PLN03211 ABC transporter G-25; Provisional
Probab=98.75 E-value=6e-09 Score=101.54 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=76.8
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee--ecCCC--Cc----ccceEEEEEeeCCc---eeEEeecc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKT--NT----TTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~--~~~~~--~~----t~~~~~~~~~~~~~---~~~liDtp 195 (242)
..++++++.+++|+.++|+|+||+|||||+|.|+|...+. .|... +. ......+++.|++. ..++.|+.
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 161 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL 161 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHH
Confidence 4688899999999999999999999999999999986542 23211 11 11234677777642 33566666
Q ss_pred ccchhcc---CCCHHHHHHHHHHHHHHcCcccccce-----eeecCCccccccc
Q 026174 196 GLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMV-----VFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~-----v~D~~~g~~~~~i 241 (242)
.+..... ..+.++..+.++++++.+++.+...- .+..++|++++++
T Consensus 162 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv 215 (659)
T PLN03211 162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRV 215 (659)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHH
Confidence 5432211 22344556778899999999775432 2345788888765
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.75 E-value=3.9e-09 Score=112.48 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=84.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc-------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT-------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t-------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... +.. .+..+++++|... .+++.|..
T Consensus 945 aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L 1024 (2272)
T TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHH
Confidence 57788999999999999999999999999999998776654321 111 1234677777542 23455555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.+.....+.+.++.++++.++++.+++.+........++|+++|+++
T Consensus 1025 ~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLs 1071 (2272)
T TIGR01257 1025 LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071 (2272)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 44433344555566778899999999998888888889999998763
No 279
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=3.7e-09 Score=91.11 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=71.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... +. . .+...+++++... ..++.|
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 99 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE 99 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH
Confidence 35667899999999999999999999999999998766544211 10 0 1112444555421 123333
Q ss_pred ccccchh----------ccC-----CCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 194 TPGLMLN----------KSG-----YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 194 tpG~~~~----------~~~-----~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+..+... ... ....+....+.++++.+++.+.....+..++++++++++
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 100 NLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred HHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 3222100 000 011123356778889999988777777778888888753
No 280
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.74 E-value=8.6e-09 Score=84.41 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=82.6
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCce--------
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADTQ-------- 188 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~~-------- 188 (242)
+.++.+++.+..+..++++|.||+|||||.+.|.|...++.|+... .++...+.+++|+++.
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 4566789999999999999999999999999999998887664322 1233445667776531
Q ss_pred eEEeeccccchhccCCCHHHHHHHHHHHHHHcCc-ccccceeeecCCcccccccC
Q 026174 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL-FEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l-~d~ll~v~D~~~g~~~~~i~ 242 (242)
..+.|.|-- ..+.++...-.+++.+.+..+|+ .|...+....++.++.|.||
T Consensus 107 GqiLd~PL~--l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 107 GQILDFPLR--LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred hhHhcchhh--hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 245666632 34556777778899999999998 56666667776666666553
No 281
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.74 E-value=5.3e-09 Score=91.15 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=71.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCce-----e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADTQ-----I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~~-----~ 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....+++++.... .
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 106 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRK 106 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCC
Confidence 46678999999999999999999999999999998766544221100 12245666654211 1
Q ss_pred EEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.+.|...+... ............+.++++.+++. +.....+..+++++++++
T Consensus 107 t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 107 TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 12222211110 11223334455788899999986 455556667788888765
No 282
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.74 E-value=2.8e-09 Score=90.48 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=65.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-------c----cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-------T----THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-------t----~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|..... + .....+++++... ..++.|
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 94 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE 94 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH
Confidence 4567899999999999999999999999999999876654422110 0 1223566665432 112222
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcC-cccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVN-LFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~-l~d~ll~v~D~~~g~~~~~i 241 (242)
...+.....+.. ......++++.++ +.+.....+..++|++++++
T Consensus 95 ~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv 140 (230)
T TIGR03410 95 NLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQL 140 (230)
T ss_pred HHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHH
Confidence 222211111111 1223455666665 45555555667888888765
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.74 E-value=8.6e-09 Score=97.56 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=74.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCC--c----eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKAD--T----QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~--~----~~~ 190 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ....+++++|.. . ..+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 47788999999999999999999999999999998766544321110 012467777642 1 123
Q ss_pred Eeeccccchhc----c----C-CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNK----S----G-YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~----~----~-~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+.... . + ......+..+.++++.+++. +.....+..+||+++|++
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 33433221100 0 1 11223345678899999996 666777788888888875
No 284
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.74 E-value=5e-09 Score=90.85 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=71.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee---cCCC--Cc-------------ccceEEEEEeeCCc--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV---SRKT--NT-------------TTHEVLGVMTKADT-- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~---~~~~--~~-------------t~~~~~~~~~~~~~-- 187 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+.. |... +. ......+++++...
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 98 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLV 98 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccc
Confidence 3567899999999999999999999999999999875432 2110 10 00123566666432
Q ss_pred -eeEEeeccccchh----c----cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 -QICIFDTPGLMLN----K----SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 -~~~liDtpG~~~~----~----~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+++.|...+... . ........+..+.++++.+++.+.....+..++++++|++
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 1233333322110 0 0111233456788899999998776667777888888765
No 285
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.73 E-value=4.9e-09 Score=90.44 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=80.4
Q ss_pred hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC------CCcccc---eEEEEEeeCCceeEEeecc
Q 026174 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK------TNTTTH---EVLGVMTKADTQICIFDTP 195 (242)
Q Consensus 125 ~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~------~~~t~~---~~~~~~~~~~~~~~liDtp 195 (242)
+.+.++++++++++|.+++++|+||+||||+|+.|+|...|..|.. |...+. ..++++.-. .....+|.|
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq-k~ql~Wdlp 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ-KLQLWWDLP 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhh-hheeeeech
Confidence 4447888999999999999999999999999999999988865532 222111 011111100 122345555
Q ss_pred -----ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccc
Q 026174 196 -----GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFV 240 (242)
Q Consensus 196 -----G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~ 240 (242)
++.......+.++..++...+.+.+++...+-+.+-.+|-++|.+
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmr 164 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMR 164 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHH
Confidence 333344456778888999999999999998888888877676654
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.73 E-value=5.9e-09 Score=98.43 Aligned_cols=114 Identities=12% Similarity=0.103 Sum_probs=73.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce--eecCCC--Cc---c------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKT--NT---T------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~~~~~~--~~---t------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+ ..|... +. . ....+++++|... .+++
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 95 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSV 95 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcH
Confidence 46678999999999999999999999999999998654 233211 10 0 1134677776532 2233
Q ss_pred eeccccchhcc--C--CCHHHHHHHHHHHHHHcCcccccc-eeeecCCccccccc
Q 026174 192 FDTPGLMLNKS--G--YSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~--~--~~~~~~~~~i~~~l~~~~l~d~ll-~v~D~~~g~~~~~i 241 (242)
.|...+..... + ....+...++.++++.+++.+... ..+..+||+++|++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 96 AENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 44433221111 1 233445567889999999986543 44566888887765
No 287
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.6e-09 Score=89.49 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=68.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. ......+++++....
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 35678999999999999999999999999999997543 222111 00 112346677665321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|...+.....+. ...+....+.++++.+++. +..-..+..+++++++++
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2233333322111222 2234455677888888764 233344566777777765
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.73 E-value=7.8e-09 Score=97.37 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=70.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCceeEEee---c
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADTQICIFD---T 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~liD---t 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... .....++++|......+.. .
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 97 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDD 97 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhh
Confidence 46678999999999999999999999999999998766544321100 0112445554321100000 0
Q ss_pred cccch-hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.++.. ..... ......++.++++.+++.+.....+..+||+++|++
T Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 144 (490)
T PRK10938 98 TGRTTAEIIQD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKT 144 (490)
T ss_pred ccccHHHhccc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHH
Confidence 01110 00000 112345788899999998877777888999988875
No 289
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=7.9e-09 Score=89.55 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=70.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C------c--------ccceEEEEEeeCCc---e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N------T--------TTHEVLGVMTKADT---Q 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~------~--------t~~~~~~~~~~~~~---~ 188 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|... + . .....++++++... .
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 104 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPH 104 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCC
Confidence 46678999999999999999999999999999998765543211 1 0 01234566665432 1
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.++.|+..+.....+. +..+....+.++++.+++.+ ........+++++++++
T Consensus 105 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 105 LSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 2333433332111122 23445567888899998853 33334455677777654
No 290
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.72 E-value=3.1e-09 Score=88.04 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=80.9
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc---------ccceEEEEEeeCC---ceeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT---------TTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~---------t~~~~~~~~~~~~---~~~~liDt 194 (242)
..++++++....|.++|++|+||+||||+++.|.+...|+.|..... .-+..+|+++... ..++.-++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 46788999999999999999999999999999999877765432211 1112344443111 13344455
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-++..+.++...+.+.++.++.+.+++.+++...+--.+.+++|+|
T Consensus 96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV 142 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKV 142 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHH
Confidence 55555666778888899999999999999887766655555555543
No 291
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.72 E-value=4.3e-08 Score=76.02 Aligned_cols=90 Identities=30% Similarity=0.350 Sum_probs=59.3
Q ss_pred EEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCc
Q 026174 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (242)
Q Consensus 144 lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l 222 (242)
++|++|+|||||+|.|.+......+...+++........... ...+.++|+||+....... ......+...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~-----~~~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG-----REREELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch-----hhHHHHHHHHHHh
Confidence 579999999999999998766555555555555443333322 4578899999986432211 1112333445566
Q ss_pred ccccceeeecCCcccc
Q 026174 223 FEVLMVVFDVHRHLTR 238 (242)
Q Consensus 223 ~d~ll~v~D~~~g~~~ 238 (242)
.|.+++++|...+...
T Consensus 76 ~d~il~v~~~~~~~~~ 91 (163)
T cd00880 76 ADLILFVVDADLRADE 91 (163)
T ss_pred CCEEEEEEeCCCCCCH
Confidence 7899999999876543
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.72 E-value=5.4e-09 Score=100.01 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=71.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc----eeEEeeccccchhccC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT----QICIFDTPGLMLNKSG 203 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~liDtpG~~~~~~~ 203 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... .....+++++|... ..++.|...+......
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCceEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 355677888999999999999999999999999987665554322 12235677776531 1233333322211111
Q ss_pred CCHHHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
.... ...+..+++.+++.+ .....+..+||++++++
T Consensus 418 ~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 454 (556)
T PRK11819 418 VGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRL 454 (556)
T ss_pred cccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence 1111 123456889999864 45566778888888875
No 293
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=7.2e-09 Score=90.37 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=66.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|... +..|... +. ..+..+++++|....+
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 3566899999999999999999999999999999754 2222111 10 1122466666643211
Q ss_pred -EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
++.|..-+.....+.. ....+.+.++++.+++. +.....+..++++++|++
T Consensus 108 ~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 108 KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 2223322221111222 22345566777777763 334444566788887765
No 294
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.71 E-value=6.5e-09 Score=88.14 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=68.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc---eeecCCC--Cc-----ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV---AAVSRKT--NT-----TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~---~~~~~~~--~~-----t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|... +..|... +. ......++++|... .+++.|+
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~en 101 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRET 101 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHH
Confidence 4667899999999999999999999999999999866 4433211 11 11234566665432 1233333
Q ss_pred cccchhccC---CCHHHHHHHHHH-HHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSG---YSHKDVKVRVES-AWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~---~~~~~~~~~i~~-~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.-+...... .........+.. .++.+++.+..-..+..+++++++++
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 152 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRV 152 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHH
Confidence 322111111 111122233444 78888887766555667777877765
No 295
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=6.8e-09 Score=91.33 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=68.0
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--Cc----------ccceEEEEEeeCCcee--
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--NT----------TTHEVLGVMTKADTQI-- 189 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~~----------t~~~~~~~~~~~~~~~-- 189 (242)
++++++.+.+|..++|+|+||+|||||++.|+|... +..|... +. ......++++|....+
T Consensus 55 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~ 134 (285)
T PRK14254 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK 134 (285)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC
Confidence 566789999999999999999999999999999854 2223211 10 1123456666653211
Q ss_pred EEeeccccchhccCCCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.+.|...+.....+.+. .....+.++++.+++. +.+......++|+++|++
T Consensus 135 tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 135 SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH
Confidence 22333322111122222 3455678888888874 233444566788887765
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=8.2e-09 Score=97.65 Aligned_cols=114 Identities=8% Similarity=0.055 Sum_probs=74.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-eeecCCC--Cc--c-------cceEEEEEeeCCc------ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT--NT--T-------THEVLGVMTKADT------QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-~~~~~~~--~~--t-------~~~~~~~~~~~~~------~~ 189 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|... +..|... +. + ....+++++|... .+
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM 356 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC
Confidence 5778899999999999999999999999999999865 2333221 10 0 1123577776531 12
Q ss_pred EEeeccccch--hccC---CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 190 CIFDTPGLML--NKSG---YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~--~~~~---~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
++.|+.-+.. .... .+..+....+.++++.+++. +.....+..+||+++|++
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 357 GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 3333332211 0101 12333456788999999996 566666788888888875
No 297
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.71 E-value=9e-09 Score=99.70 Aligned_cols=115 Identities=11% Similarity=0.115 Sum_probs=78.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee---ecCCC--Cc-----ccceEEEEEeeCCc---eeEEee
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKT--NT-----TTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---~~~~~--~~-----t~~~~~~~~~~~~~---~~~liD 193 (242)
..++++++.+++|+.++|+|+||+|||||+++|.|...+. .|... +. ..+...++++|++. .+++.|
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e 118 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE 118 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence 3577899999999999999999999999999999976542 12111 11 11234577777653 346667
Q ss_pred ccccchhcc---CCCHHHHHHHHHHHHHHcCcccccceeee------cCCccccccc
Q 026174 194 TPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFD------VHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D------~~~g~~~~~i 241 (242)
+.-+..... ....++.+.+++++++.+++.+...-.+. .++|++++++
T Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 665533222 23445666789999999999876554443 4788888765
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.71 E-value=8.6e-09 Score=97.30 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=73.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-eecCCCCcc-----------cceEEEEEeeCCc------ee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTT-----------THEVLGVMTKADT------QI 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-~~~~~~~~t-----------~~~~~~~~~~~~~------~~ 189 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+ ..|...... ....+++++|... ..
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 354 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL 354 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC
Confidence 57788999999999999999999999999999998763 333221110 1123567766521 11
Q ss_pred EEeeccccch--hcc---CCCHHHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 190 CIFDTPGLML--NKS---GYSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~--~~~---~~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.. ... .......+..+.++++.+++.+ .....+..+||+++|++
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 412 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence 2223222211 010 1122334567889999999964 55666778888888875
No 299
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.71 E-value=7.2e-09 Score=98.56 Aligned_cols=114 Identities=9% Similarity=0.069 Sum_probs=73.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C------cc------cceEEEEEeeCCce
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N------TT------THEVLGVMTKADTQ 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~------~t------~~~~~~~~~~~~~~ 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... + .. +...+++++|....
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~ 103 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV 103 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchh
Confidence 46678999999999999999999999999999998654 223211 0 00 11346777775321
Q ss_pred -e----EEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcccc---cceeeecCCccccccc
Q 026174 189 -I----CIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEV---LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 -~----~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~---ll~v~D~~~g~~~~~i 241 (242)
+ .+.+..-+... ..+.+..+...++.++++.+++.+. ....+..+||+++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv 165 (529)
T PRK15134 104 SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV 165 (529)
T ss_pred hcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence 1 11111111011 1133445566788999999999763 3455677888888876
No 300
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.70 E-value=8.7e-08 Score=75.62 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=52.9
Q ss_pred EEEEcCCCCchhHHHHHHhC-CcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCC-CHHHHHHHHHHHHHH
Q 026174 142 VGIIGAPNAGKSSIINYMVG-TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKVRVESAWSA 219 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~ 219 (242)
++++|.+|+|||||+|.|.+ ......+...+.|..... . .....+.++||||+....... ........+..++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--F-NVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--E-EccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999994 333334555555544322 2 223478899999975432111 111122223333433
Q ss_pred cCcccccceeeecCCc
Q 026174 220 VNLFEVLMVVFDVHRH 235 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g 235 (242)
..-.+.+++++|....
T Consensus 79 ~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 79 RENLKGVVLLIDSRHG 94 (170)
T ss_pred ChhhhEEEEEEEcCcC
Confidence 3334567777777654
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.70 E-value=1.1e-08 Score=96.91 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=71.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCCc------eeEE
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKADT------QICI 191 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~~------~~~l 191 (242)
++++++.+.+|.+++|+|+||+|||||++.|+|...+..|...... ....++|++|... ..++
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~ 358 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL 358 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence 5678889999999999999999999999999998665544321111 0123566665421 1112
Q ss_pred eeccccc--hh-ccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 192 FDTPGLM--LN-KSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~--~~-~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.+..-.. .. .........+..+.++++.+++. +.....+..+||+++|++
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 2221100 00 00111223345688999999996 677777788999988875
No 302
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.70 E-value=6.3e-08 Score=77.16 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=52.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC---CceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.++++|.+|+|||||+|.|.+..... ...++.|.......+... +..+.++||||.... ... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~------~~~------~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF------TNM------RA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH------HHH------HH
Confidence 47899999999999999998765432 222334433322223322 346789999996311 010 11
Q ss_pred HHcCcccccceeeecCCccc
Q 026174 218 SAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~~ 237 (242)
.....+|.+++|+|++++..
T Consensus 69 ~~~~~~d~il~v~d~~~~~~ 88 (168)
T cd01887 69 RGASLTDIAILVVAADDGVM 88 (168)
T ss_pred HHHhhcCEEEEEEECCCCcc
Confidence 23456789999999987643
No 303
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=4.3e-09 Score=89.80 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=67.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----Ccc------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----NTT------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----~~t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|... ... .....+++++... ..++.|
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 99 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE 99 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH
Confidence 46678999999999999999999999999999998766544221 100 1223566665432 112223
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHc-CcccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAV-NLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~-~l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+.... .........+.++++.+ ++.+........+++++++++
T Consensus 100 ~l~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl 146 (237)
T PRK11614 100 NLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQML 146 (237)
T ss_pred HHHHhhhc--cChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHH
Confidence 22211100 11223344566667776 465544455667788887765
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.69 E-value=8e-09 Score=98.76 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=70.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc----eeEEeeccccchhccCC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT----QICIFDTPGLMLNKSGY 204 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~liDtpG~~~~~~~~ 204 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... .....+++++|... ..++.|...+.....+.
T Consensus 338 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 416 (552)
T TIGR03719 338 IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQL 416 (552)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCceEEEEEeCCccccCCCCcHHHHHHhhcccccc
Confidence 55677888999999999999999999999999987665554322 11235677777531 12333333222111111
Q ss_pred CHHHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 205 SHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
... ...+..+++.+++.+ .....+..+||++++++
T Consensus 417 ~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv 452 (552)
T TIGR03719 417 GKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRV 452 (552)
T ss_pred Ccc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHH
Confidence 111 223557889999864 45556678888888875
No 305
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.69 E-value=9.3e-09 Score=97.17 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=72.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCCc------eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKADT------QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~~------~~~ 190 (242)
.++++++.+.+|.+++|+|+||+|||||++.|+|...+..|...... .....++++|... ..+
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 46788899999999999999999999999999998765544321110 0123566666421 122
Q ss_pred Eeeccccchhcc----C--CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKS----G--YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~----~--~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+..... + ......++.+.++++.+++. +.....+..+||+++|++
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH
Confidence 333322211000 0 11223345678899999994 667777788888888875
No 306
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.68 E-value=6.1e-09 Score=86.38 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=64.4
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc------ceEEEEEeeCCc---eeEEeeccccchhc
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT------HEVLGVMTKADT---QICIFDTPGLMLNK 201 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~------~~~~~~~~~~~~---~~~liDtpG~~~~~ 201 (242)
++++.+++|..++|+|+||+|||||+++|+|...+..|....... ....+++.+... ..++.|..-+....
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 97 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI 97 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh
Confidence 368899999999999999999999999999987665443221111 112334433211 11222322211110
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
. .....+..+++.+++.+........+++++++++
T Consensus 98 ~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl 132 (195)
T PRK13541 98 Y-----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIV 132 (195)
T ss_pred c-----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHH
Confidence 0 0134567778888887766666667777777765
No 307
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=7.5e-09 Score=91.10 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=67.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCCC--Cc----------ccceEEEEEeeCCcee--
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRKT--NT----------TTHEVLGVMTKADTQI-- 189 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~~--~~----------t~~~~~~~~~~~~~~~-- 189 (242)
++++++.+.+|..++|+|+||+|||||+++|+|... + ..|... +. ..+..+++++|....+
T Consensus 55 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~ 134 (286)
T PRK14275 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK 134 (286)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc
Confidence 556789999999999999999999999999999632 1 323111 10 1123466666643211
Q ss_pred EEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.+.|+..+.....+. +.......+.++++.+++. +.....+..++|+++|++
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 233333222111122 2233445677788888763 334445566788887765
No 308
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.68 E-value=1.1e-07 Score=75.44 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=51.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|||||||+|.+.+..... ...+..+.......+...+ -.+.++|+||... .... ...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~---------~~~~---~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER---------FRSL---IPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH---------HHHH---HHH
Confidence 57899999999999999999875532 3334444333222232222 2467999999421 1111 122
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+..++.+++|+|..++.
T Consensus 69 ~~~~~~~ii~v~d~~~~~ 86 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQ 86 (161)
T ss_pred HhccCCEEEEEEECcCHH
Confidence 345567888888887653
No 309
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=8.6e-09 Score=98.03 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=71.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchh-c--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLN-K-- 201 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~-~-- 201 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ...+++++|... ..++.|...+... .
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 94 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-NERLGKLRQDQFAFEEFTVLDTVIMGHTELWE 94 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCcCCCCcHHHHHHHhhHHHHH
Confidence 46678999999999999999999999999999998766544432111 134667766431 1223333221100 0
Q ss_pred --------cC---------------------CCHHHHHHHHHHHHHHcCcccccc-eeeecCCccccccc
Q 026174 202 --------SG---------------------YSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTRFVI 241 (242)
Q Consensus 202 --------~~---------------------~~~~~~~~~i~~~l~~~~l~d~ll-~v~D~~~g~~~~~i 241 (242)
.. +...+.+.++.++++.+++.+... ..++.+||++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv 164 (530)
T PRK15064 95 VKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRV 164 (530)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHH
Confidence 00 000122456788999999976543 45677888888765
No 310
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=9.7e-09 Score=88.89 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=68.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|... +. ......+++++....+
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 106 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP 106 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc
Confidence 3566789999999999999999999999999999754 1 122110 10 1123466776653211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.+.|...+.....+. +..+....+.++++.+++.+ .+...+..++++++|++
T Consensus 107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 107 QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 222222221111121 23344556778888888753 33445566778877765
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=8.5e-09 Score=98.07 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=71.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-----eeEEeeccccchhccC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----QICIFDTPGLMLNKSG 203 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~liDtpG~~~~~~~ 203 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ....++++|... ...+.|...... .
T Consensus 335 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~ 410 (530)
T PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMSQWR---Q 410 (530)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEcccccccCCCCCcHHHHHHHhc---c
Confidence 5567788899999999999999999999999998766555433222 234677776431 122233222110 0
Q ss_pred CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
. ...+..+.++++.+++. +.....+..+||++++++
T Consensus 411 -~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 447 (530)
T PRK15064 411 -E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM 447 (530)
T ss_pred -C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH
Confidence 1 11235678899999984 566667788888888875
No 312
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=1.4e-08 Score=98.08 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=83.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee---ecCC-------CCcccceEEEEEeeCCc---eeEEee
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRK-------TNTTTHEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---~~~~-------~~~t~~~~~~~~~~~~~---~~~liD 193 (242)
..++++++..++|+..+++|++|+|||||+|+|+|+.... .|.. .........+|+.|++. ..++.+
T Consensus 44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E 123 (613)
T KOG0061|consen 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE 123 (613)
T ss_pred eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence 3466789999999999999999999999999999986532 1211 11223356788888763 446666
Q ss_pred ccccchhcc---CCCHHHHHHHHHHHHHHcCcccccceeee-----cCCccccccc
Q 026174 194 TPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFD-----VHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D-----~~~g~~~~~i 241 (242)
|.-+..... .++..+.+++++++++.+++.++..-++. -.+|++|+.+
T Consensus 124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 665543222 13567888999999999999988877776 3777887765
No 313
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=3.4e-08 Score=85.59 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=75.3
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC--------------CCcccceEEEEEeeCC---ceeEEeec
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK--------------TNTTTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~--------------~~~t~~~~~~~~~~~~---~~~~liDt 194 (242)
+++..+.....++.|+||+|||||||+|.|...++.+.. ......+.+||++|+. +++++.-+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 456677767889999999999999999999877663321 1112235688888864 35566666
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.-+..... ....++++.+.+|+.+++...--.++|+++|.|+
T Consensus 97 L~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVA 138 (352)
T COG4148 97 LRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVA 138 (352)
T ss_pred hhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHH
Confidence 55432211 2456788999999999988888889999988763
No 314
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.3e-08 Score=87.70 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=67.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCCC--C----------cccceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRKT--N----------TTTHEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~~--~----------~t~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|... + .......+++++...
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP 98 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCC
Confidence 3667899999999999999999999999999999753 2 122110 0 011234566666432
Q ss_pred eeEEeeccccchhccC-CCHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 188 QICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
..++.|+..+.....+ ....+....+.++++.+++.+ ..-..+..++++++|++
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 99 AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 1223333322111112 123344566788888888753 22233455777777765
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.67 E-value=1.1e-07 Score=76.22 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=30.4
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
..+.++||||+........ .-+.+.+..+|++++|+++...+...
T Consensus 101 ~~~~lvDtPG~~~~~~~~~--------~~~~~~~~~~d~vi~V~~~~~~~~~~ 145 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT--------EITEEYLPKADVVIFVVDANQDLTES 145 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS--------HHHHHHHSTTEEEEEEEETTSTGGGH
T ss_pred cceEEEeCCccccchhhhH--------HHHHHhhccCCEEEEEeccCcccchH
Confidence 3578999999964222111 23344457889999999998876643
No 316
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.67 E-value=6.1e-09 Score=88.19 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=68.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.....+ ....++++++.... .++.|+.
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl 108 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI 108 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHh
Confidence 35668999999999999999999999999999998766555321111 12345666654321 1222222
Q ss_pred ccchhccCCCHHHHH-----HHHHHHHHHc--CcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVK-----VRVESAWSAV--NLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~-----~~i~~~l~~~--~l~d~ll~v~D~~~g~~~~~i 241 (242)
-+... .....+.. ..+.++++.+ ++.+.+-..+..++|++++++
T Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv 159 (226)
T cd03248 109 AYGLQ--SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV 159 (226)
T ss_pred ccccC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 21111 11111111 1245667777 677666666777888888765
No 317
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.3e-08 Score=88.63 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=68.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. .....++++++....
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 114 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA 114 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc
Confidence 45678999999999999999999999999999997642 223110 10 112346667664321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
..+.|+..+.....+. ........+.++++.+++.+ .+-.....++++++|++
T Consensus 115 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 115 KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 1233333221111121 23344566778888888743 33344456777777765
No 318
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.2e-08 Score=87.89 Aligned_cols=114 Identities=13% Similarity=0.184 Sum_probs=66.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... +..|... +. ......++++|....
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP 98 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC
Confidence 3566789999999999999999999999999999864 1222111 10 012235566654321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|...+.....+. ........+..+++.+++. +..-..+..++++++|++
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 99 FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 1222322211111111 1223345677788888873 233344566777877765
No 319
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.66 E-value=1.5e-07 Score=85.37 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=51.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----CCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
.....|+++|.+|+|||||||+|.|......+.. ..+|.. ...|.....+++.++|.||+..+. ..
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~-~~~Y~~p~~pnv~lWDlPG~gt~~---------f~ 102 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTME-PTPYPHPKFPNVTLWDLPGIGTPN---------FP 102 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS--EEEE-SS-TTEEEEEE--GGGSS-----------
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCC-CeeCCCCCCCCCeEEeCCCCCCCC---------CC
Confidence 4567899999999999999999998644332221 123333 334444444689999999996542 23
Q ss_pred HHHHHHHcCcccccceeeecCCcc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
..++++.+++..+-++++=.+...
T Consensus 103 ~~~Yl~~~~~~~yD~fiii~s~rf 126 (376)
T PF05049_consen 103 PEEYLKEVKFYRYDFFIIISSERF 126 (376)
T ss_dssp HHHHHHHTTGGG-SEEEEEESSS-
T ss_pred HHHHHHHccccccCEEEEEeCCCC
Confidence 567778888776555555444433
No 320
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.66 E-value=6.2e-08 Score=79.92 Aligned_cols=85 Identities=18% Similarity=0.340 Sum_probs=53.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCc------ceeecCCCCcccceEEEEEeeC--------------CceeEEeeccccchh
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKA--------------DTQICIFDTPGLMLN 200 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~------~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~liDtpG~~~~ 200 (242)
+++++|.+|+|||||++.+++.. .......+++|.......+... ...+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 58899999999999999998731 1111222344443322212111 34678999999621
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
-...++......|.+++|+|+..+.+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~ 106 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQ 106 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 13344455566789999999987654
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.4e-08 Score=98.65 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=70.6
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-eeEEeeccccchhccCCCHH
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHK 207 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~ 207 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... ....++|++|... .+..-.++--.. ......
T Consensus 328 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~igy~~Q~~~~~l~~~~~~~~~~--~~~~~~ 404 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-KGIKLGYFAQHQLEFLRADESPLQHL--ARLAPQ 404 (638)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC-CCEEEEEecCcchhhCCccchHHHHH--HHhCch
Confidence 445677889999999999999999999999999877665543211 1235677776421 111111211000 011112
Q ss_pred HHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 208 DVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 208 ~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
.....+..++..+++. +.....+..+||++++.+
T Consensus 405 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl 439 (638)
T PRK10636 405 ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARL 439 (638)
T ss_pred hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHH
Confidence 2345678899999985 456666788888888865
No 322
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.6e-08 Score=87.02 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=66.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C---c-------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N---T-------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~---~-------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... + . ..+...+++++....
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP 97 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc
Confidence 45678999999999999999999999999999996431 122110 0 0 112345666664321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.++.|+.-+.....+. +..+..+.+.++++.+++.+ ..-..+..++++++|++
T Consensus 98 ~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 98 MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 1223333221111221 22344566777888887642 23334456777777765
No 323
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.65 E-value=1.7e-08 Score=105.54 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=80.4
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc---eeecCCC--C----cccceEEEEEeeCCc---eeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV---AAVSRKT--N----TTTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~---~~~~~~~--~----~t~~~~~~~~~~~~~---~~~liDt 194 (242)
..++++++.+++|..++|+|+||+|||||+|.|+|... +..|... + ...+...++++|++. ..++.++
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence 35778899999999999999999999999999999864 2223211 1 112245677777542 3456666
Q ss_pred cccchhcc---CCCHHHHHHHHHHHHHHcCcccccceeee----cCCcccccccC
Q 026174 195 PGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFD----VHRHLTRFVIC 242 (242)
Q Consensus 195 pG~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D----~~~g~~~~~i~ 242 (242)
.-+..... ..+..+..+.++++++.+++.++....+. -++|+++|+++
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHH
Confidence 55432221 23445556788999999999888777765 57788887753
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.65 E-value=1.3e-08 Score=87.80 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=64.7
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchhccCCCHHHH
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLNKSGYSHKDV 209 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 209 (242)
.+.+.+|.+++|+|+||+|||||+++|+|...+..|....... .+++++|... ..++.|.......... ..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~~ 92 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--TVSYKPQYIKADYEGTVRDLLSSITKDFY----TH 92 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--eEEEecccccCCCCCCHHHHHHHHhhhcc----cc
Confidence 3456689999999999999999999999987766554322221 4555655321 1222332211111000 01
Q ss_pred HHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 210 ~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.....++++.+++.+.....+..++|+++|++
T Consensus 93 ~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 124 (246)
T cd03237 93 PYFKTEIAKPLQIEQILDREVPELSGGELQRV 124 (246)
T ss_pred HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH
Confidence 12356788889998777677778888888875
No 325
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.65 E-value=8.8e-08 Score=76.45 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=48.7
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceee---cCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAV---SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
++++|++|||||||+|.|.+...... ......|.....+.+...+..+.++||||.... .. ....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~---~~~~ 69 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL---------RS---LWDK 69 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh---------HH---HHHH
Confidence 68999999999999999987543211 111222333222333334457789999996311 01 1112
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-++.+++|+|+.++
T Consensus 70 ~~~~~~~~v~vvd~~~~ 86 (167)
T cd04160 70 YYAECHAIIYVIDSTDR 86 (167)
T ss_pred HhCCCCEEEEEEECchH
Confidence 34556778888887654
No 326
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.65 E-value=9.3e-09 Score=98.75 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=70.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|.+++++|+||+|||||++.|+|...+..|... ....+...++++|+.. ..++.|+..
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 5667999999999999999999999999999998776655322 1122345677777542 123444443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccce----------eeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV----------VFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~----------v~D~~~g~~~~~i~ 242 (242)
+..+ ..+ .+.+.++++.+++.+.+.. -...++|+++|+++
T Consensus 436 ~~~~--~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 436 LAAP--NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred cCCC--ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 3221 111 3456777778887765443 23347888887763
No 327
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.1e-08 Score=91.88 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=69.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce----eecCCC--Cc--------c----cceEEEEEeeCCce-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKT--NT--------T----THEVLGVMTKADTQ- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~----~~~~~~--~~--------t----~~~~~~~~~~~~~~- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. . +...+++++|+...
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~ 101 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSC 101 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchh
Confidence 46678999999999999999999999999999998642 222111 10 0 01246777775421
Q ss_pred ----eEEeeccccchhc---cC---CCHHHHHHHHHHHHHHcCcccc---cceeeecCCccccccc
Q 026174 189 ----ICIFDTPGLMLNK---SG---YSHKDVKVRVESAWSAVNLFEV---LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ----~~liDtpG~~~~~---~~---~~~~~~~~~i~~~l~~~~l~d~---ll~v~D~~~g~~~~~i 241 (242)
.++.++....... .+ ....+....+.++++.+++.+. +......+||+++|.+
T Consensus 102 l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv 167 (330)
T PRK15093 102 LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKV 167 (330)
T ss_pred cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1122222111000 01 0113445678899999999752 3344556778887765
No 328
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.8e-08 Score=86.72 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=66.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCC--CCc----------ccceEEEEEeeCCc---
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRK--TNT----------TTHEVLGVMTKADT--- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~--~~~----------t~~~~~~~~~~~~~--- 187 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+. .|.. .+. ......+++++...
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFP 98 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCc
Confidence 466789999999999999999999999999999986432 1211 010 11224566666532
Q ss_pred eeEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 188 QICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
..++.|+..+.....+. ...+..+.+.+.++.+++. +.....+..++|++++++
T Consensus 99 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 99 TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 12334443322111111 2233345566666666543 223344566777877765
No 329
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.64 E-value=3.9e-08 Score=78.23 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=77.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee---ec-----CCCC---cccceEEEEEeeCC---ceeEEeec
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VS-----RKTN---TTTHEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---~~-----~~~~---~t~~~~~~~~~~~~---~~~~liDt 194 (242)
+.++++.+.+|+++.++||||+|||||+.-+.|...+. .+ +... -+.+++.|+++|++ +++.+..+
T Consensus 18 La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~N 97 (213)
T COG4136 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQN 97 (213)
T ss_pred EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccc
Confidence 45578999999999999999999999999998854332 11 1111 12235678888764 35556666
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..|-.+..-. ...-+..++.+++..++....-.--+..+|+++-.|
T Consensus 98 l~fAlp~~~K-G~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARv 143 (213)
T COG4136 98 LLFALPATLK-GNARRNAANAALERSGLDGAFHQDPATLSGGQRARV 143 (213)
T ss_pred eEEecCcccc-cHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHH
Confidence 6665444332 234467788999999999877777788888877543
No 330
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.64 E-value=1.4e-08 Score=97.26 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=73.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchh-c--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLN-K-- 201 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~-~-- 201 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ...+++++|... .+++.|...+... .
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~ 100 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKA 100 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHH
Confidence 46778999999999999999999999999999998766555432111 235778877542 2344555432110 0
Q ss_pred -----------cCCCH----------------------HHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 202 -----------SGYSH----------------------KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 202 -----------~~~~~----------------------~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..... .+...++.++++.+++.+ ....+..+||++++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv 172 (556)
T PRK11819 101 ALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRV 172 (556)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHH
Confidence 00000 012356778888888864 4556677888888765
No 331
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.3e-08 Score=86.77 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=66.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCCC--C----------cccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKT--N----------TTTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~~--~----------~t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+++|..++|+|+||+|||||++.|+|...+. .+... + .......+++++....
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 356689999999999999999999999999999986652 12100 0 0112235555554221
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.++.|+..+.....+. +..+....+.++++.+++.+ ..-..+..+++++++++
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 102 MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 1222222211111121 22333456778888888743 23334456777777765
No 332
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=8.7e-09 Score=86.88 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=65.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------c-cceEEEEEeeCC---ceeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------T-THEVLGVMTKAD---TQICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t-~~~~~~~~~~~~---~~~~liD 193 (242)
.++++++.+++|++++++|+||+|||||+++|+|...+..+..... . -+.-++++++.. +.+++.|
T Consensus 18 ~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeE 97 (237)
T COG0410 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEE 97 (237)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHH
Confidence 4667899999999999999999999999999999876653322111 1 112355566543 2345555
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcC-cccccceeeecCCcccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVN-LFEVLMVVFDVHRHLTRFV 240 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~-l~d~ll~v~D~~~g~~~~~ 240 (242)
+.-+....... .......++++++.|- +.+.....--.+||++||-
T Consensus 98 NL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQM 144 (237)
T COG0410 98 NLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQM 144 (237)
T ss_pred HHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHH
Confidence 54432111110 0111112455555552 4455555555667776663
No 333
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=1.8e-08 Score=90.54 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=69.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C----------cccceEEEEEeeCCc--e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N----------TTTHEVLGVMTKADT--Q 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~----------~t~~~~~~~~~~~~~--~ 188 (242)
.++++++.+.+|..++|+|++|+|||||+++|+|.... ..|... + ...+...++++|... .
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~ 176 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE 176 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC
Confidence 35678999999999999999999999999999997532 122210 0 112345677776532 1
Q ss_pred eEEeeccccchhccCCCHHH-HHHHHHHHHHHcCccc----ccceeeecCCcccccccC
Q 026174 189 ICIFDTPGLMLNKSGYSHKD-VKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~-~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i~ 242 (242)
.++.|+..+.....+....+ ....+..+++.+++.+ .+--....++|+++|++|
T Consensus 177 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 177 MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 23445544322222222222 2344667777777632 333445567888887764
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=98.64 E-value=1.7e-08 Score=99.12 Aligned_cols=110 Identities=8% Similarity=0.127 Sum_probs=70.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHH
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHK 207 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~ 207 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ...++|++|.. ..+.+.+++-+.... ..+.
T Consensus 525 l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-~~~igyv~Q~~~~~l~~~~~~~~~~~~-~~~~- 601 (718)
T PLN03073 525 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-KVRMAVFSQHHVDGLDLSSNPLLYMMR-CFPG- 601 (718)
T ss_pred EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-ceeEEEEeccccccCCcchhHHHHHHH-hcCC-
Confidence 4556677889999999999999999999999998776555432211 23567777643 112222332211100 0000
Q ss_pred HHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 208 DVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 208 ~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
.....+..+++.+++.+ .....+..+||++++++
T Consensus 602 ~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 11345778999999973 55666778888888876
No 335
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.64 E-value=7e-08 Score=78.19 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=51.6
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeec---------------CCCCcccceEEEEEeeCCceeEEeeccccchhccCCCH
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH 206 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 206 (242)
|+++|.+|+|||||+|.|.+....... ...+.+.......+......+.++||||....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~------ 75 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF------ 75 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH------
Confidence 789999999999999999886443211 11222322222223333456789999996421
Q ss_pred HHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 207 ~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.. .....+..+|.+++|+|+..+..
T Consensus 76 ---~~---~~~~~~~~~d~~i~v~d~~~~~~ 100 (189)
T cd00881 76 ---SS---EVIRGLSVSDGAILVVDANEGVQ 100 (189)
T ss_pred ---HH---HHHHHHHhcCEEEEEEECCCCCc
Confidence 11 12223346789999999887654
No 336
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.64 E-value=1.3e-08 Score=98.94 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=70.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc----eeEEeeccccchhccCC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT----QICIFDTPGLMLNKSGY 204 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~liDtpG~~~~~~~~ 204 (242)
++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... .....++|++|... ..++.|...+.......
T Consensus 335 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~ 413 (635)
T PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMV 413 (635)
T ss_pred EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccc
Confidence 34566788999999999999999999999999987665554332 22335677776421 12334443221110000
Q ss_pred CHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 205 SHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
. .....+..++..+++. +.....+..+||++++++
T Consensus 414 ~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl 449 (635)
T PRK11147 414 N--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRL 449 (635)
T ss_pred c--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHH
Confidence 1 1134577888888885 455666678888888765
No 337
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1.5e-08 Score=86.25 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=36.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 46678999999999999999999999999999998766544
No 338
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.1e-08 Score=86.34 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=67.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee-----cCC-----CCc-------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-----SRK-----TNT-------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~-----~~~-----~~~-------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+.. |.. ... ..+...++++|....+
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP 98 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc
Confidence 3566789999999999999999999999999999865531 211 000 1123466676653211
Q ss_pred -EEeeccccchhccCCC-HHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGYS-HKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~~-~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+.....+.. .......+..+++.+++. +..-.....++++++|++
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2233332211111221 223345566677777764 234445566777777765
No 339
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.63 E-value=1.1e-07 Score=76.41 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.|+++|.+|+|||||+|.|.|.... ...+ .+.- .... .++||||..... . .....++..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~----~~v~-~~~~--~~iDtpG~~~~~-----~---~~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKT----QAVE-FNDK--GDIDTPGEYFSH-----P---RWYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----Cccc----eEEE-ECCC--CcccCCccccCC-----H---HHHHHHHHHH
Confidence 5889999999999999999986421 0111 1111 1111 279999985321 1 1233344556
Q ss_pred CcccccceeeecCCccc
Q 026174 221 NLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~ 237 (242)
.-+|.+++|+|+..+.+
T Consensus 63 ~~ad~il~v~d~~~~~s 79 (158)
T PRK15467 63 QDVDMLIYVHGANDPES 79 (158)
T ss_pred hcCCEEEEEEeCCCccc
Confidence 77899999999987653
No 340
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.5e-08 Score=87.21 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=67.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|... +. ......++++|....+
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP 99 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc
Confidence 4567899999999999999999999999999999753 1 223211 10 1123456776653211
Q ss_pred -EEeeccccchhccCC--CHHHHHHHHHHHHHHcCcccc----cceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY--SHKDVKVRVESAWSAVNLFEV----LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~--~~~~~~~~i~~~l~~~~l~d~----ll~v~D~~~g~~~~~i 241 (242)
.+.|...+....... ........+.++++.+++.+. +......++++++|++
T Consensus 100 ~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 100 KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 122222211111111 223344567788899998652 2233455777777765
No 341
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.63 E-value=1.2e-08 Score=85.95 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=36.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 46678999999999999999999999999999998765544
No 342
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.9e-08 Score=88.02 Aligned_cols=114 Identities=10% Similarity=0.085 Sum_probs=68.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C---c------ccceEEEEEeeCCce--e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N---T------TTHEVLGVMTKADTQ--I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~---~------t~~~~~~~~~~~~~~--~ 189 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+ ..|... + . ......++++|.... .
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~ 115 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPM 115 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCc
Confidence 35678999999999999999999999999999998653 222111 1 0 112345666654321 1
Q ss_pred EEeeccccchhccC-CCHHHHHHHHHHHHHHcCcccc----cceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEV----LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~d~----ll~v~D~~~g~~~~~i 241 (242)
++.++..+...... .+..+....+.++++.+++.+. +......+++++++++
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23333222111111 2333444566778888887642 2334556777877765
No 343
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.62 E-value=1.8e-08 Score=98.18 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=76.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|...... +....++++|... ...
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 102 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT 102 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence 36678999999999999999999999999999998766544221110 1234566665432 112
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+.-+.....+.+..+..+.+.++++.+++.+.+......++++++|++
T Consensus 103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv 153 (648)
T PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRV 153 (648)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHH
Confidence 233322211112334455566788999999998887777788888888875
No 344
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.62 E-value=1.4e-08 Score=85.64 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=36.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 46678999999999999999999999999999998766544
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.62 E-value=6.7e-08 Score=87.54 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeeccccchhcc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS 202 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 202 (242)
..+||||.||+|||||+|+|++.....++..|++|.....|++...+ ..+.++|.||+....+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 46899999999999999999998763577789998888887766443 2467899999975432
Q ss_pred CCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 203 ~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
.- +..-..++..+.-+|.+++|+|...
T Consensus 83 ~g-----~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KG-----EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cc-----cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11 1123467888888999999999864
No 346
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.62 E-value=5.7e-09 Score=85.57 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=34.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+.
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~ 52 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356678999999999999999999999999999986543
No 347
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.62 E-value=1.9e-08 Score=83.90 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=43.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
.++++++.+++|..++|+|+||+|||||++.|+|...+..|...... .++++++..
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~ 75 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEP 75 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCc
Confidence 46678999999999999999999999999999998776555432222 466666653
No 348
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.61 E-value=1.5e-08 Score=90.81 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=66.8
Q ss_pred EEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccccchhccCCCHHHHHHH
Q 026174 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 144 lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..+.....+.+..+...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 579999999999999999876654432111 11234677776532 2345555544332223344555677
Q ss_pred HHHHHHHcCcccccceeeecCCcccccccC
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+.++++.+++.+........+||+++|+++
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRva 110 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVA 110 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHH
Confidence 889999999988877778889999988763
No 349
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.61 E-value=6.4e-09 Score=87.02 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=73.0
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCC-----ceeEE
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKAD-----TQICI 191 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~-----~~~~l 191 (242)
..+.+++..+..+..+.++|.||+|||||+|.|.|...++.|.... ..+....+.++|++ +.+++
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 4566788999999999999999999999999999977665543221 11112223355543 23344
Q ss_pred eeccccch---hccCCC---HHHHHHHHHHHHHHc--CcccccceeeecCCcccccccC
Q 026174 192 FDTPGLML---NKSGYS---HKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 192 iDtpG~~~---~~~~~~---~~~~~~~i~~~l~~~--~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
.++..+-. ...++. +...+....+-++.+ |+...+--.++.+||++||.++
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 44433321 111221 223344455555554 5678888899999999999763
No 350
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2e-08 Score=87.40 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=65.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--C---c-------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--N---T-------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~---~-------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... +..|... + . ......++++|....+
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP 115 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc
Confidence 3566789999999999999999999999999999642 2222110 0 0 1123456666643211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.+.|+..+....... ........+.++++.+++.+ .....+..++|+++|++
T Consensus 116 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 116 KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 223332221111111 12223455677788887742 23344556777777765
No 351
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.2e-08 Score=86.12 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=66.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCC--CCc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRK--TNT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~--~~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|.. .+. ......++++|....
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP 99 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc
Confidence 3566789999999999999999999999999998632 2 12211 111 012346667665321
Q ss_pred eEEeeccccchhccCCC-HHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGYS-HKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~-~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
.++.|+.-+.....+.. .......+..+++.+++.. ........+++++++++
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 100 MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH
Confidence 12333332211111222 2233456777888887642 33334456777777765
No 352
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.9e-08 Score=85.54 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=66.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCC-----CC-------cccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRK-----TN-------TTTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~-----~~-------~t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|.. +. .......++++|....+
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 100 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP 100 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc
Confidence 46678999999999999999999999999999986431 12211 10 01122356666543211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
++.|+..+.....+. +....+..+.++++.+++.+ .+-..+..+++++++++
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 101 KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence 223333222211121 22334456777788777643 23344556777777764
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=98.61 E-value=1.6e-08 Score=97.31 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=70.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchhccCCC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLNKSGYS 205 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~ 205 (242)
++++++.+..|.+++|+|+||+|||||++.|+|...+..|..... ..+++++|... ..++.|...+... ...
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i~y~~Q~~~~~~~~tv~e~l~~~~~--~~~ 429 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPDYDGTVEDLLRSITD--DLG 429 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeEEEecccccCCCCCcHHHHHHHHhh--hcC
Confidence 344556678999999999999999999999999876655433211 34666766432 2233333322111 111
Q ss_pred HHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 206 ~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
. ...+.++++.+++.+.....+..+||+++|++
T Consensus 430 ~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRv 462 (590)
T PRK13409 430 S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRV 462 (590)
T ss_pred h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHH
Confidence 1 23467889999998888888889999999876
No 354
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.61 E-value=2.7e-08 Score=95.19 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=49.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|..... ....+++++|... .+++.|+..
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~Q~~~~~~~~tv~e~i~ 90 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPA-PGIKVGYLPQEPQLDPTKTVRENVE 90 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEec-CCCEEEEEeccCCCCCCCcHHHHHH
Confidence 4677899999999999999999999999999999876655543211 1245777877542 234455543
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=3.1e-08 Score=85.55 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=67.1
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCH
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH 206 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 206 (242)
..++++++.+.+|+++++||.||+||||+-+.|+|+..++.|...... ..+. .+..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g------------~~i~------------~~~~ 82 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG------------KDIT------------KLSK 82 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC------------cchh------------hcch
Confidence 456778999999999999999999999999999998776544322221 1110 1114
Q ss_pred HHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 207 KDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 207 ~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
.+..+++.++++.+|+.. .+...-...+|+++|.|
T Consensus 83 ~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 83 EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 556678999999999865 55555566888888875
No 356
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=1.2e-08 Score=82.09 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=73.3
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------------CCcccceEEEEEeeCCc---
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------------TNTTTHEVLGVMTKADT--- 187 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------------~~~t~~~~~~~~~~~~~--- 187 (242)
..+.++.++.+.|..++++||||+|||||++.|.-...+..|.. .....+...|+++|...
T Consensus 16 q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwp 95 (242)
T COG4161 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWP 95 (242)
T ss_pred hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCc
Confidence 44566788889999999999999999999998865544443311 11122345666665432
Q ss_pred eeEEeecccc-chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 QICIFDTPGL-MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~-~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+++++++.-- .....+++.++.+.++.+++..+.+.++....-=-++|+++|.+
T Consensus 96 hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrv 150 (242)
T COG4161 96 HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRV 150 (242)
T ss_pred hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhH
Confidence 3333322210 12344677888889999999999999866543333555555543
No 357
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.60 E-value=1.7e-08 Score=95.93 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=65.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
+++++..+++|..++++|+||+|||||++.|+|...+..|.... ...+...++++|+.. ..++.|+.-
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~ 417 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR 417 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHh
Confidence 56678999999999999999999999999999987776543311 112335677777542 123344433
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i 241 (242)
+..+ ..+ ++.+.++++..++.+.+-. --..++|+++|++
T Consensus 418 ~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 418 LARP--DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred ccCC--CCC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 3211 112 2345555555555443221 1245788888875
No 358
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.7e-08 Score=85.56 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C---c-------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N---T-------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~---~-------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... + . ......++++|....
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 35667999999999999999999999999999997542 222111 1 0 112346666664321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
..+.|+..+.....+. .....++.+.++++.+++.+ .....+..+++++++++
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 98 MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 2233333222111111 22234456777888888753 23333455677776654
No 359
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.59 E-value=2.1e-08 Score=96.06 Aligned_cols=111 Identities=10% Similarity=0.079 Sum_probs=67.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|+++++||++|+|||||+|.|.+...++.|... ....+..+++++|+... .++.|+.
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI 423 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHH
Confidence 45667999999999999999999999999999997766544322 22233556777765432 2345555
Q ss_pred ccchhccCCCHHHHHHHHHH-----HHHHcCcccccceee----ecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVES-----AWSAVNLFEVLMVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~-----~l~~~~l~d~ll~v~----D~~~g~~~~~i~ 242 (242)
.+..+. .+.+++.+.++. .+..+ .+...-++ ..+||+++|.++
T Consensus 424 ~~g~~~--at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 424 ALGRPD--ATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred hcCCCC--CCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHH
Confidence 443221 233444333332 23333 22222223 347888888764
No 360
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.59 E-value=7.4e-08 Score=88.93 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=78.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-----------ceEEEEEeeCC---ceeEEeec
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-----------HEVLGVMTKAD---TQICIFDT 194 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-----------~~~~~~~~~~~---~~~~liDt 194 (242)
.+++++.+.+|++.+++|.||+|||||++.|.|...|+.|+....++ +.-+|+++|.. +.+++.++
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN 99 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN 99 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence 45678999999999999999999999999999988887665432222 23356677543 23344444
Q ss_pred cccchhc---cCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCcccccc
Q 026174 195 PGLMLNK---SGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFV 240 (242)
Q Consensus 195 pG~~~~~---~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~ 240 (242)
.-+.... ...+....++++.++.+..|+. |.--.|-|.+.|.+|++
T Consensus 100 iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 100 IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHH
Confidence 4332221 1236677889999999999995 66667778888776653
No 361
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.59 E-value=1e-08 Score=87.41 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+..|
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG 57 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 45678999999999999999999999999999998766544
No 362
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.6e-08 Score=92.93 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=70.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--c---------ceEEEEEeeCCceeEEeec--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--T---------HEVLGVMTKADTQICIFDT-- 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--~---------~~~~~~~~~~~~~~~liDt-- 194 (242)
.++++++.+..|.+++|+|+||+|||||+++|+|...+..|...... . ....+++++......+++.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 342 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD 342 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence 46778899999999999999999999999999998766544321111 0 1124555554211111111
Q ss_pred ---------cccchhccC-CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 195 ---------PGLMLNKSG-YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 ---------pG~~~~~~~-~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
........+ ......+..+.++++.+++. +.....+..+||+++|++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH
Confidence 100001011 12234456778899999985 456666778888888875
No 363
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.8e-08 Score=93.38 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=63.6
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC-----C-----CcccceEEEEEeeCCc--eeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-----T-----NTTTHEVLGVMTKADT--QICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~-----~-----~~t~~~~~~~~~~~~~--~~~liDt 194 (242)
..++++++.+++|..+++||+||+|||||+|.|+|...+..|+. + .....+++.++.|.+. ..++.|+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 45677899999999999999999999999999999887654432 1 2223345666666532 1234455
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccce
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV 228 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~ 228 (242)
..+..+. .-++.+.++++..++.+.+-.
T Consensus 415 i~l~~~~------~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 415 ILLARPD------ASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred hhccCCc------CCHHHHHHHHHHhcHHHhhcC
Confidence 5543321 124556677777777665544
No 364
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.58 E-value=1.6e-08 Score=99.55 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=68.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||++.|.|...+..|... ....+..+++++|+.. ..++.|+.
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI 575 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENI 575 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHH
Confidence 35668999999999999999999999999999998777655331 1223346778887643 22455555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i~ 242 (242)
.+..+ ..+ ++.+.++++..++.+.+.- --..++|+++|+++
T Consensus 576 ~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRla 627 (711)
T TIGR00958 576 AYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIA 627 (711)
T ss_pred hcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHH
Confidence 44322 112 2344555555555443221 12347888888763
No 365
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.58 E-value=1.7e-08 Score=98.74 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=69.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|... ....+...++++|+.. ..++.|+.
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 547 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH
Confidence 35667999999999999999999999999999998877655332 1122345788887643 22455555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i 241 (242)
.+..+ .+. +.+.++++..++.+.+... -..+||+++|.+
T Consensus 548 ~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 548 AGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred hcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 44322 222 3455666666665443221 134788888876
No 366
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.58 E-value=1.6e-07 Score=78.26 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCccee---------------ecCCCCcccceEEEEEeeCCceeEEeeccccchhccC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA---------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 203 (242)
...++++|..|+|||||++.|++..... .....+.|.......+...+..+.++||||..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 3568999999999999999997631100 00123444443322233334577899999973
Q ss_pred CCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..+...+...|.+++|+|+..|.+.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~ 104 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMP 104 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcH
Confidence 2244556666778999999999877543
No 367
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.58 E-value=3.9e-08 Score=92.50 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=77.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee----ecCCC-------Cc-------ccceEEEEEeeCCc-e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA----VSRKT-------NT-------TTHEVLGVMTKADT-Q 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~----~~~~~-------~~-------t~~~~~~~~~~~~~-~ 188 (242)
.++++++++.+|+.+||||.||+||||+.++|+|..... .|... .. -+...+++++|++- .
T Consensus 24 ~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~s 103 (539)
T COG1123 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTS 103 (539)
T ss_pred eeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhh
Confidence 467789999999999999999999999999999976543 12111 00 12245677877642 1
Q ss_pred eEEeecccc----chhccC-CCHHHHHHHHHHHHHHcCcccccce--eeecCCccccccc
Q 026174 189 ICIFDTPGL----MLNKSG-YSHKDVKVRVESAWSAVNLFEVLMV--VFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~----~~~~~~-~~~~~~~~~i~~~l~~~~l~d~ll~--v~D~~~g~~~~~i 241 (242)
+.-.=+.|- ....+. .+.++.+.++.++++.+++.+-... .-..+||+++|.+
T Consensus 104 lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 104 LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 111111121 122222 3477888999999999999987776 6677888888865
No 368
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.58 E-value=2.2e-07 Score=77.20 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCC----CcccceEEEEEeeCCceeEEeeccccch
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----NTTTHEVLGVMTKADTQICIFDTPGLML 199 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~liDtpG~~~ 199 (242)
..++++|.+|+|||||+|+|+|......+..+ .++.... .+.......+.++||||+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~l~l~DtpG~~~ 64 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT-PYPHPKFPNVTLWDLPGIGS 64 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce-eeecCCCCCceEEeCCCCCc
Confidence 35789999999999999999996543322111 1222111 11111124678999999863
No 369
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.8e-08 Score=85.53 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=67.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc---ce--eecCC-----CCc-------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK---VA--AVSRK-----TNT-------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~---~~--~~~~~-----~~~-------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|.. .+ ..|.. +.. ......++++|....+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP 97 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc
Confidence 356678999999999999999999999999999852 21 12211 100 0112466676643211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
++.|+..+.....+. ........+.++++.+++.+ ..-..+..++++++|++
T Consensus 98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 223333221111121 12334566788889898854 23444566788877765
No 370
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.58 E-value=2.4e-08 Score=87.16 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=64.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-----eeecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-----~~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|... +..|... +. .....+++++|....+
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 118 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP 118 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc
Confidence 3566789999999999999999999999999999754 2333211 10 1123466776653211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCc----ccccceeeecCCccccccc
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNL----FEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l----~d~ll~v~D~~~g~~~~~i 241 (242)
++.|...+....... +.......+.++++.+++ .+.....+..++|++++++
T Consensus 119 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 119 KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 222332221111122 122233445666666643 2333344556777777765
No 371
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=2.3e-07 Score=78.93 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC--cceeecCCCCcccceEEEEEee---CCceeEEeeccccchhccCCCHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
-..|+++|++++|||||+|.|.|. ..........+|+.......+. .+..+.++||||+.....+. ......+
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~~~~~~~ 84 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--FEDDARL 84 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--hhhhhHH
Confidence 346889999999999999999998 4433334466676654443333 23578899999997543322 0111111
Q ss_pred HHHHHHcCcccccceeeec
Q 026174 214 ESAWSAVNLFEVLMVVFDV 232 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~ 232 (242)
-++..+ +++++++.++.
T Consensus 85 -~~l~~l-lss~~i~n~~~ 101 (224)
T cd01851 85 -FALATL-LSSVLIYNSWE 101 (224)
T ss_pred -HHHHHH-HhCEEEEeccC
Confidence 222222 67777776664
No 372
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.9e-08 Score=85.82 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=67.2
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--C---c-------ccceEEEEEeeCCcee--
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--N---T-------TTHEVLGVMTKADTQI-- 189 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~---~-------t~~~~~~~~~~~~~~~-- 189 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... + . ..+...+++++....+
T Consensus 41 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~ 120 (272)
T PRK14236 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK 120 (272)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc
Confidence 5667899999999999999999999999999998542 223110 0 0 1123456666643211
Q ss_pred EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
++.|+.-+.....+. .....+..+.++++.+++.+ ..-..+..++++++|++
T Consensus 121 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 121 SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 223333221111222 22233456777888888753 33344566777887765
No 373
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.3e-08 Score=85.84 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-----eecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-----~~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+ ..|... +. ......++++|....
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS 102 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcccc
Confidence 35667999999999999999999999999999997643 222110 00 011235666654321
Q ss_pred eEEeeccccchhccCCCHHHHHHHHHHHHHHcCccccc----ceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVL----MVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l----l~v~D~~~g~~~~~i 241 (242)
+++.|+.-+....... ..+....+.++++.+++.+.+ -.....++++++|++
T Consensus 103 ~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 103 MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2233333221111111 123345678888888875432 122345777777765
No 374
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.57 E-value=2.3e-08 Score=84.79 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=36.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 46678999999999999999999999999999998766544
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.57 E-value=3.3e-08 Score=93.70 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=69.6
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV 209 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 209 (242)
+++++.+.+|.+|+|+|+||+|||||++.|.|...+..|... ......++|+.|...... -|. .+............
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~-~g~~v~igyf~Q~~~~l~-~~~-t~~d~l~~~~~~~~ 415 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK-VGETVKIGYFDQHRDELD-PDK-TVLEELSEGFPDGD 415 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE-eCCceEEEEEEehhhhcC-ccC-cHHHHHHhhCcccc
Confidence 345677789999999999999999999999887666544322 122256788887643322 111 11111111111111
Q ss_pred HHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 210 KVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 210 ~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
+..+..++..+++. +-....+..+||+++.++
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl 448 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL 448 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH
Confidence 56788899999885 455677788888887654
No 376
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.57 E-value=3.5e-08 Score=84.77 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=65.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCC--CC---------cccceEEEEEeeCCce--e
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRK--TN---------TTTHEVLGVMTKADTQ--I 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~--~~---------~t~~~~~~~~~~~~~~--~ 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+. .|.. .+ ...+...+++++.... .
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPM 97 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcc
Confidence 466789999999999999999999999999999976531 2211 01 0112345666654321 1
Q ss_pred EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCccccccc
Q 026174 190 CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 190 ~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i 241 (242)
++.|+.-+.....+. +.....+.+.++++.+++.+ .+-..+..+++++++++
T Consensus 98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 223333221111121 12333456677777777643 22233445677777654
No 377
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.57 E-value=3.2e-08 Score=95.11 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=66.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|.. +..|.... ...+...++++|+.. ..++.|+.
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI 443 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNV 443 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHh
Confidence 356679999999999999999999999999999988 65443221 122345778887643 22455655
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccc-----------ccceeeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFE-----------VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d-----------~ll~v~D~~~g~~~~~i~ 242 (242)
-+..+ ..+.++ +.++++..++.+ .+----..+||+++|+|+
T Consensus 444 ~~g~~--~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 444 LLGNP--DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hcCCC--CCCHHH----HHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 44321 123333 333333333332 221222348888888763
No 378
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.57 E-value=3.6e-07 Score=73.39 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=50.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
.+..+++++|++|||||||++.|.+..........+.+. ..+...+..+.++|+||... ... ..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~---------~~~---~~ 75 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRA---------IRP---YW 75 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHH---------HHH---HH
Confidence 346778999999999999999999875432222222111 12223345677899999521 111 11
Q ss_pred HHHcCcccccceeeecCC
Q 026174 217 WSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~ 234 (242)
...+..++.+++|+|++.
T Consensus 76 ~~~~~~~~~ii~v~D~~~ 93 (173)
T cd04155 76 RNYFENTDCLIYVIDSAD 93 (173)
T ss_pred HHHhcCCCEEEEEEeCCC
Confidence 223455677888888765
No 379
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.57 E-value=1.9e-08 Score=98.89 Aligned_cols=109 Identities=14% Similarity=0.037 Sum_probs=68.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|.... ...+..+++++|+.. ..++.|+.
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi 573 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHh
Confidence 356679999999999999999999999999999988776553221 122356788887643 22455555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccc-----------ceeeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVL-----------MVVFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-----------l~v~D~~~g~~~~~i~ 242 (242)
.+..+ ..+.++ +.++++..++.+.+ ----..+||+++|.|+
T Consensus 574 ~l~~~--~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 574 TLWDP--TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred hCCCC--CCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 44321 122333 34444444443322 1122347888888763
No 380
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.7e-08 Score=95.77 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=69.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCcee--EEee----ccccchhc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI--CIFD----TPGLMLNK 201 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liD----tpG~~~~~ 201 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|...... ...++++.|..... ..++ .+......
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~-~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l 94 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-NWQLAWVNQETPALPQPALEYVIDGDREYRQL 94 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCCCCCHHHHHHHhhHHHHHH
Confidence 46678999999999999999999999999999998766555432111 12345555432110 1111 00000000
Q ss_pred -------------------c----CCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 202 -------------------S----GYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 202 -------------------~----~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
. .....+...++..+++.+|+. +.....+..+||++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 95 EAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 0 000112345678889999996 455666777888888765
No 381
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.56 E-value=2.1e-08 Score=96.27 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=65.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
+++++..+++|..++|+|+||+|||||++.|+|...+..|..... ..+...++++|+..- .++.|+..
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence 556789999999999999999999999999999887765533211 122456778776421 13344443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccc-------ceee----ecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVL-------MVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-------l~v~----D~~~g~~~~~i~ 242 (242)
+..+. ..+. +.+.++++.+++.+.+ .-.+ ..++|+++|+++
T Consensus 439 ~~~~~-~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 439 YARTE-QYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred cCCCC-CCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 32110 1222 3344455555543322 1112 337888888763
No 382
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.56 E-value=2e-08 Score=96.63 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=49.2
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
+++++..+++|..++|+|+||+|||||++.|+|...+..|... ....+..+++++|+.. ..++.|+..
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~ 430 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIR 430 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHh
Confidence 5567899999999999999999999999999998777654321 1122345777877643 224455544
Q ss_pred c
Q 026174 197 L 197 (242)
Q Consensus 197 ~ 197 (242)
+
T Consensus 431 ~ 431 (588)
T PRK13657 431 V 431 (588)
T ss_pred c
Confidence 3
No 383
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.5e-08 Score=85.48 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=65.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-----ecCCC--Cc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-----VSRKT--NT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-----~~~~~--~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...+. .|... +. ......+++++....
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP 101 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC
Confidence 356679999999999999999999999999999975421 22110 10 011235666654321
Q ss_pred eEEeeccccchhccC-CCHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
.++.|+.-+.....+ .+..+....+.++++.+++. +..-.....+++++++++
T Consensus 102 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 102 MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL 159 (259)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 122222211111111 12233345677788888773 233334456777777765
No 384
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.56 E-value=2.7e-07 Score=71.91 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC--CceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|+|||||+|.+.+...... ..+..+.......+... ...+.++|+||.... .. ....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~---~~~~ 68 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF---------RS---ITPS 68 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH---------HH---HHHH
Confidence 578999999999999999988765433 11111111111112211 135679999996311 11 1222
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-.+.+++++|.++.
T Consensus 69 ~~~~~d~ii~v~d~~~~ 85 (159)
T cd00154 69 YYRGAHGAILVYDITNR 85 (159)
T ss_pred HhcCCCEEEEEEECCCH
Confidence 33446888888888763
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.56 E-value=1.4e-08 Score=99.14 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.+++++..+++|++++++|.||||||||++.|.|...+..|.. .....+.+++++.|++. ...+.|+.
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi 567 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI 567 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHH
Confidence 4666788999999999999999999999999999888765533 22334567888888653 33566766
Q ss_pred ccchh
Q 026174 196 GLMLN 200 (242)
Q Consensus 196 G~~~~ 200 (242)
-+..+
T Consensus 568 ~l~~p 572 (709)
T COG2274 568 ALGNP 572 (709)
T ss_pred hcCCC
Confidence 65443
No 386
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.56 E-value=1.8e-08 Score=96.98 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=68.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|.... ...+..+++++|+..- .++.|+.
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI 435 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV 435 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHH
Confidence 356678999999999999999999999999999988776553211 1223457778776431 1344555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i~ 242 (242)
.+.. ..+. +.+.++++.+++.+.+-. --+.++|+++|+++
T Consensus 436 ~~~~---~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 436 TLGR---DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred HhCC---CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 4431 1222 335556666665543321 12347888888763
No 387
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.55 E-value=1.9e-07 Score=72.29 Aligned_cols=57 Identities=32% Similarity=0.525 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeecccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGL 197 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~ 197 (242)
.+++++|.+|+|||||+|.|.+.. ......+..+.......+...+ ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 368899999999999999999877 3344445555544333233333 35678999994
No 388
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.54 E-value=3.1e-08 Score=93.28 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=69.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce-eecCCC--------Cc---ccceEEEEEeeCCcee-----E
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKT--------NT---TTHEVLGVMTKADTQI-----C 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-~~~~~~--------~~---t~~~~~~~~~~~~~~~-----~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+ ..|... +. .....+++++|..... .
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCc
Confidence 46678889999999999999999999999999997542 122110 00 0123456666542111 0
Q ss_pred Eeecc--ccch--hccCCCHHHHHHHHHHHHHHcCccc-ccceeeecCCccccccc
Q 026174 191 IFDTP--GLML--NKSGYSHKDVKVRVESAWSAVNLFE-VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtp--G~~~--~~~~~~~~~~~~~i~~~l~~~~l~d-~ll~v~D~~~g~~~~~i 241 (242)
+.+.. ++.. ..........+..+.++++.+++.+ .....+..+||+++|++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 11111 1100 0001111233457889999999987 77777788888888875
No 389
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.54 E-value=3.8e-08 Score=85.52 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=32.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|..
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 356689999999999999999999999999999864
No 390
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.54 E-value=7.8e-08 Score=78.89 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++++++.+++|.+++|+|+||+|||||+++|.+
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3667899999999999999999999999999964
No 391
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.53 E-value=2.2e-08 Score=98.19 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|..++++|+||+|||||++.|+|...+..|... ....+..+++++|+.. ..++.|+..
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~ 560 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHh
Confidence 5567899999999999999999999999999998777655321 1122346777877643 224555554
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i 241 (242)
+..+ ..+. +.+.++++..++.+.+... -..+||+++|++
T Consensus 561 ~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 561 LGAP--YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred CCCC--CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 4322 1222 3344555555544332211 124777887765
No 392
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.53 E-value=2.4e-08 Score=95.53 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=67.1
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|..++|+|+||+|||||++.|+|...+..|..... ..+...++++|++. ..++.|+..
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 427 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA 427 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHh
Confidence 456789999999999999999999999999999877665533211 22344677777642 223444444
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i~ 242 (242)
+..+ ...+. +++.++++.+++.+.+.- --..+||+++|+++
T Consensus 428 ~~~~-~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 428 YGRT-EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred cCCC-CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 3221 01222 334555555555433221 12347888888764
No 393
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.53 E-value=6.7e-08 Score=90.27 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=76.4
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-----------ceEEEEEeeCC---ceeEEe
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-----------HEVLGVMTKAD---TQICIF 192 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-----------~~~~~~~~~~~---~~~~li 192 (242)
..++++++.+.+|+.++++|.||+|||||++.|+|...++.|.....+. ..-+..++|+- +++++.
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa 101 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA 101 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence 3467789999999999999999999999999999988776554321111 12244466653 234455
Q ss_pred eccccch-hc---cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLML-NK---SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~-~~---~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
++.-+.- +. ...+.........++++.+++..-....+-.++..+||.|
T Consensus 102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence 5543321 11 1246788889999999999984224444455666666654
No 394
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.53 E-value=5.3e-07 Score=73.94 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=52.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
+....++++|.+|||||||+|.+.+....... .|.......+...+..+.++|+||.... .. ..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~---~~ 78 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA---------RR---LW 78 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence 44577899999999999999999986432221 1222222333333456789999996321 01 11
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
-..+.-++.+++|+|+++.
T Consensus 79 ~~~~~~ad~ii~vvD~~~~ 97 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDK 97 (184)
T ss_pred HHHhCCCCEEEEEEECCcH
Confidence 1234567888888887664
No 395
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.53 E-value=2.8e-08 Score=96.98 Aligned_cols=113 Identities=17% Similarity=0.011 Sum_probs=69.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCce--eEEeeccccchhccCC-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ--ICIFDTPGLMLNKSGY- 204 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~- 204 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|.... ..+...++++|+... .++.|+.-+.......
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~-~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 545 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTK-PAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK 545 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEee-cCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhh
Confidence 356678999999999999999999999999999986554443221 113456777775321 1333333221110000
Q ss_pred CHHHHHHHHHHHHHHcCccccccee---------eecCCccccccc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVV---------FDVHRHLTRFVI 241 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v---------~D~~~g~~~~~i 241 (242)
......+.+.++++.+++.+.+... .+.++|+++|++
T Consensus 546 ~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 546 RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHH
Confidence 0001134567788888887654332 256888888875
No 396
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.53 E-value=7e-08 Score=85.11 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=74.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-e---ee-cCCCCc--------------ccceEEEEEeeCCc-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-A---AV-SRKTNT--------------TTHEVLGVMTKADT- 187 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-~---~~-~~~~~~--------------t~~~~~~~~~~~~~- 187 (242)
.++++++++.+|++++|||.||+||||+.++|+|... + .+ |..... -+...+++++|++.
T Consensus 20 av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~ 99 (316)
T COG0444 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMT 99 (316)
T ss_pred EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchh
Confidence 4677899999999999999999999999999999765 2 12 111111 12346778888642
Q ss_pred eeEEeecccc----chhccC-C-CHHHHHHHHHHHHHHcCccc---ccceeeecCCccccccc
Q 026174 188 QICIFDTPGL----MLNKSG-Y-SHKDVKVRVESAWSAVNLFE---VLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~----~~~~~~-~-~~~~~~~~i~~~l~~~~l~d---~ll~v~D~~~g~~~~~i 241 (242)
.++-+=+.|- ....+. . ..++.++++.++++.+++.+ .+-..-..+||+++|.|
T Consensus 100 sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV 162 (316)
T COG0444 100 SLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV 162 (316)
T ss_pred hcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence 2221222222 122222 2 35667889999999999986 33444455777777764
No 397
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=3.6e-08 Score=83.97 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=36.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 45667899999999999999999999999999998766544
No 398
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.52 E-value=5.4e-07 Score=70.35 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=45.7
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
++++|++|||||||+|.|.+..... ...+..+.. ...+......+.++|+||... .... .-..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~---------~~~~---~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFN--MRKVTKGNVTLKVWDLGGQPR---------FRSM---WERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcc--eEEEEECCEEEEEEECCCCHh---------HHHH---HHHHHh
Confidence 6899999999999999999864431 112211111 111222334678999999521 1111 112234
Q ss_pred cccccceeeecCC
Q 026174 222 LFEVLMVVFDVHR 234 (242)
Q Consensus 222 l~d~ll~v~D~~~ 234 (242)
..+.+++|+|+..
T Consensus 67 ~~d~ii~v~d~~~ 79 (159)
T cd04159 67 GVNAIVYVVDAAD 79 (159)
T ss_pred cCCEEEEEEECCC
Confidence 5677778888765
No 399
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.52 E-value=2.3e-08 Score=85.26 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=36.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 58 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG 58 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence 46678999999999999999999999999999998765544
No 400
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.52 E-value=3.1e-07 Score=73.87 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|.+|||||||++.+.+........ +..+.......+.... ..+.++|+||... ... ...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~---~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES---------FRS---ITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH---------HHH---HHH
Confidence 468999999999999999999865432221 1111111111122222 2567999999421 111 112
Q ss_pred HHcCcccccceeeecCCcc
Q 026174 218 SAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.-.+.+++|+|+.++.
T Consensus 72 ~~~~~~d~il~v~d~~~~~ 90 (168)
T cd01866 72 SYYRGAAGALLVYDITRRE 90 (168)
T ss_pred HHhccCCEEEEEEECCCHH
Confidence 2345567888888877543
No 401
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=5.1e-08 Score=83.83 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=67.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCCC--Cc----------ccceEEEEEeeCCcee-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRKT--NT----------TTHEVLGVMTKADTQI- 189 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~~--~~----------t~~~~~~~~~~~~~~~- 189 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|... +. ......+++++....+
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 3567899999999999999999999999999998642 1 222110 10 1123466776653211
Q ss_pred -EEeeccccchhccCC-CHHHHHHHHHHHHHHcCccc----ccceeeecCCcccccccC
Q 026174 190 -CIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLFE----VLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 190 -~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~d----~ll~v~D~~~g~~~~~i~ 242 (242)
.+.|..-+.....+. +.......+.++++.+++.+ .+-..+..++++++++++
T Consensus 98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 222222211111111 22344567788888888743 223334557777777653
No 402
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.51 E-value=9.6e-08 Score=82.81 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-------------Ccccc----------eEEEEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------------NTTTH----------EVLGVMTK 184 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-------------~~t~~----------~~~~~~~~ 184 (242)
.+++++ .+.+|.+++|+|+||+|||||+++|+|...+..|... +.... ...+++++
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 455666 4889999999999999999999999998877655431 11100 00111111
Q ss_pred CCcee--EEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 185 ADTQI--CIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 185 ~~~~~--~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..... .+.++... .......+..+.++++.+++.+........+++++++.+
T Consensus 95 ~~~~~~~~~~~~i~~-----~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 148 (255)
T cd03236 95 YVDLIPKAVKGKVGE-----LLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRV 148 (255)
T ss_pred hhccCchHHHHHHHH-----HhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 10000 00011100 012223346678899999998776666667888887765
No 403
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.51 E-value=3.6e-07 Score=72.42 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=47.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
+++++|++|+|||||+|.+.+..... .....+.+.......+....-.+.++|+||.... .. ..-..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~---~~~~~ 69 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF---------RT---LTSSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh---------hh---hhHHH
Confidence 57899999999999999998865432 1222222211111111111125679999995211 00 01122
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+..+|.+++++|.+++.
T Consensus 70 ~~~~d~~i~v~d~~~~~ 86 (161)
T cd01863 70 YRGAQGVILVYDVTRRD 86 (161)
T ss_pred hCCCCEEEEEEECCCHH
Confidence 45678888888877654
No 404
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=6.7e-08 Score=83.21 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=64.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc--e---eecCC--CCc----------ccceEEEEEeeCCce--
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV--A---AVSRK--TNT----------TTHEVLGVMTKADTQ-- 188 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~--~---~~~~~--~~~----------t~~~~~~~~~~~~~~-- 188 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|... + ..|.. .+. ......++++|....
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 99 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP 99 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC
Confidence 3566789999999999999999999999999999643 2 12211 010 112345666664321
Q ss_pred eEEeeccccchhccCC-CHHHHHHHHHHHHHHcCcc----cccceeeecCCccccccc
Q 026174 189 ICIFDTPGLMLNKSGY-SHKDVKVRVESAWSAVNLF----EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~-~~~~~~~~i~~~l~~~~l~----d~ll~v~D~~~g~~~~~i 241 (242)
..+.|..-+.....+. ..+.....+.+.++.+++. +..-..+..+++++++++
T Consensus 100 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 100 FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 1223332221111121 1222334566677777653 233344556777777765
No 405
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=5.9e-08 Score=84.87 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=33.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3566799999999999999999999999999999753
No 406
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4.1e-08 Score=91.61 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC----------CCCcccceEEEEEeeCCceeEEeecccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR----------KTNTTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
.++++++.++.|++++|+|.||+||||++|+|.+..- ..|. ......+..+++++|+...+ =||.-.
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF--ndTIl~ 443 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF--NDTILY 443 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccccc--chhHHH
Confidence 3566789999999999999999999999999987533 2221 11222335678888754321 123211
Q ss_pred c--hhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCccccccc
Q 026174 198 M--LNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVI 241 (242)
Q Consensus 198 ~--~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i 241 (242)
. ......+. +.+.++.+..++.|.+... --.++|+++|.|
T Consensus 444 NI~YGn~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 444 NIKYGNPSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred HhhcCCCCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 1 11112233 3355555566666554443 234677777765
No 407
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.50 E-value=8.8e-07 Score=72.45 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
....++++|++|||||||++.+.+....... .|.....+.+...+..+.++|+||... ... ...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~----~T~~~~~~~i~~~~~~~~l~D~~G~~~---------~~~---~~~ 81 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHV----PTLHPTSEELTIGNIKFKTFDLGGHEQ---------ARR---LWK 81 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccCcceEEEEECCEEEEEEECCCCHH---------HHH---HHH
Confidence 3566789999999999999999886542211 122222233333345677999999521 111 112
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|.++.
T Consensus 82 ~~~~~ad~iilV~D~~~~ 99 (190)
T cd00879 82 DYFPEVDGIVFLVDAADP 99 (190)
T ss_pred HHhccCCEEEEEEECCcH
Confidence 233456788888887654
No 408
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=87.00 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=71.9
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
.+...++.++|.|||||||++|.++.... .+.+.+++|+...+|++......+.++||||+..+... +...++...-.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plE-drN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-DRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchh-hhhHHHHHHHH
Confidence 35677788999999999999999987654 47888999998888877666677889999999754322 11112222223
Q ss_pred HHHHcCcccccceeeecCCccccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
+ ...+-..+|+++|.|.-+...
T Consensus 243 A--LAHLraaVLYfmDLSe~CGyS 264 (620)
T KOG1490|consen 243 A--LAHLRSAVLYFMDLSEMCGYS 264 (620)
T ss_pred H--HHHhhhhheeeeechhhhCCC
Confidence 3 334557899999998776543
No 409
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.50 E-value=2.9e-08 Score=86.99 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=65.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCcee--EEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADTQI--CIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~~~--~liDtp 195 (242)
.++++++.+++|.+++|+|+||+|||||+++|.|... ..|... + ...+..+++++|....+ ++.|+.
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 4677899999999999999999999999999999764 323211 1 01123456666543211 122222
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeec-----------CCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV-----------HRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~-----------~~g~~~~~i~ 242 (242)
.. ..... .+.+.++++.+++.+.+....+. ++++++|.+|
T Consensus 98 ~~---~~~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 98 DP---YGKWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred hh---ccCCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 11 00111 23466777888887665555554 7777777654
No 410
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.50 E-value=5.2e-08 Score=82.11 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=35.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG 56 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 46678999999999999999999999999999998765544
No 411
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.2e-08 Score=84.17 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=33.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 3566799999999999999999999999999999764
No 412
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.50 E-value=3.5e-07 Score=88.13 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=59.8
Q ss_pred cCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccc
Q 026174 146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225 (242)
Q Consensus 146 G~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ 225 (242)
|.||||||||+|.|+|... .+++.+++|.....+.+...+..+.++||||.... ...+.+ +.+....-..+..|.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~-~~~s~~---e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL-TTFSLE---EEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc-CccchH---HHHHHHHHhhcCCCE
Confidence 8999999999999999864 57888999988776666555567889999998632 222211 122222222345799
Q ss_pred cceeeecCCc
Q 026174 226 LMVVFDVHRH 235 (242)
Q Consensus 226 ll~v~D~~~g 235 (242)
+++|+|+++.
T Consensus 76 vI~VvDat~l 85 (591)
T TIGR00437 76 VVNVVDASNL 85 (591)
T ss_pred EEEEecCCcc
Confidence 9999998763
No 413
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.50 E-value=5.2e-07 Score=70.27 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=50.2
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+++++|.+|||||||+|.+.+.... .. .| .+. ... ..++||||.... .......+...+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t----~~~-~~~---~~~iDt~G~~~~--------~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KT----QAV-EYN---DGAIDTPGEYVE--------NRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cc----eeE-EEc---CeeecCchhhhh--------hHHHHHHHHHHh
Confidence 5789999999999999999886431 01 11 111 111 158999997321 112233344457
Q ss_pred CcccccceeeecCCcccc
Q 026174 221 NLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~ 238 (242)
.-+|.+++|+|+.++.+.
T Consensus 61 ~~ad~vilv~d~~~~~s~ 78 (142)
T TIGR02528 61 ADADVIALVQSATDPESR 78 (142)
T ss_pred hcCCEEEEEecCCCCCcC
Confidence 788999999999877653
No 414
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.49 E-value=3.8e-07 Score=75.29 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=51.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCc--ceee---c----------CCCCcccceEEEEEeeCCceeEEeeccccchhccCC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTK--VAAV---S----------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~--~~~~---~----------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 204 (242)
..++++|.+|+|||||+|.+++.. .... . ...+.+.......+......+.++||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 368999999999999999998521 1100 0 0123333322222333445778999999732
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
... .....+.-.|.+++|+|+.++.
T Consensus 78 ----~~~---~~~~~~~~~d~~ilV~d~~~~~ 102 (194)
T cd01891 78 ----FGG---EVERVLSMVDGVLLLVDASEGP 102 (194)
T ss_pred ----HHH---HHHHHHHhcCEEEEEEECCCCc
Confidence 111 1222345568889999987753
No 415
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.49 E-value=3.1e-07 Score=80.30 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=55.5
Q ss_pred EEEEcCCCCchhHHHHHHhC---Cc--ceeec------------CCCCcccceEEEEEeeCCceeEEeeccccchhccCC
Q 026174 142 VGIIGAPNAGKSSIINYMVG---TK--VAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g---~~--~~~~~------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 204 (242)
++++|.+|+|||||+++|+. .. ...+. ...+.|.......+.+.+..+.++||||....
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df---- 77 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF---- 77 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH----
Confidence 78999999999999999963 11 11111 12344444444445556668899999996421
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..++...+...|.+++|+|+..|.+.
T Consensus 78 --------~~~~~~~l~~aD~ailVVDa~~g~~~ 103 (270)
T cd01886 78 --------TIEVERSLRVLDGAVAVFDAVAGVEP 103 (270)
T ss_pred --------HHHHHHHHHHcCEEEEEEECCCCCCH
Confidence 12344455666899999999887653
No 416
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.49 E-value=1.3e-07 Score=81.10 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=32.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
.++++++.+++|..++|+|+||+|||||+++|+|..
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 356688999999999999999999999999999984
No 417
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.49 E-value=1.1e-07 Score=81.84 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=32.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35667899999999999999999999999999996
No 418
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.49 E-value=4.3e-08 Score=93.94 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|... + ...+..+++++|+.. ..++.|+.
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni 434 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI 434 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHH
Confidence 35667899999999999999999999999999998776554321 1 112235677777543 22445555
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccc-----------ceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVL-----------MVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-----------l~v~D~~~g~~~~~i 241 (242)
.+..+. .+. +.+.++++.+++.+.+ ---...++|+++|++
T Consensus 435 ~~~~~~--~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 435 RYGRPD--ATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred hcCCCC--CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 442211 122 2344445554443222 111234777887765
No 419
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.48 E-value=5.1e-07 Score=71.62 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
.+++++|++|+|||||+|.+.+..... .....+....... +.... -.+.++|+||... .... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--v~~~~~~~~~~i~D~~G~~~---------~~~~---~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQT--VNLDDTTVKFEIWDTAGQER---------YRSL---A 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--EEECCEEEEEEEEeCCchHH---------HHHH---H
Confidence 357899999999999999999876543 1122221111111 11222 2457899999421 0000 1
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
-..+.-.+.+++++|..++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~ 86 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSE 86 (163)
T ss_pred HHHhccCCEEEEEEECcCH
Confidence 1123345677777777654
No 420
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.48 E-value=6.3e-07 Score=70.92 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=47.6
Q ss_pred EEEEcCCCCchhHHHHHHhCCcc--eeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
|+++|.+|||||||++.+.+... .......+.+ ...+......+.++||||.... .... -..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~---------~~~~---~~~ 65 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKY---------RGLW---EHY 65 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhh---------HHHH---HHH
Confidence 67999999999999999998532 1122222211 1112233346789999996311 1111 122
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+.-++.+++|+|++++.
T Consensus 66 ~~~~d~ii~v~D~~~~~ 82 (162)
T cd04157 66 YKNIQGIIFVIDSSDRL 82 (162)
T ss_pred HccCCEEEEEEeCCcHH
Confidence 45578888889987653
No 421
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.48 E-value=9.4e-07 Score=69.96 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=47.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|+|||||++.+.+..... ...+..+.......+...+ ..+.++|+||... ... ....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~---~~~~ 68 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER---------FRS---ITSS 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHH---------HHH---HHHH
Confidence 57899999999999999998865421 1112111111111122222 2567999999421 111 1112
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-+|.+++++|+.++.
T Consensus 69 ~~~~~d~~ilv~d~~~~~ 86 (164)
T smart00175 69 YYRGAVGALLVYDITNRE 86 (164)
T ss_pred HhCCCCEEEEEEECCCHH
Confidence 234578888888887654
No 422
>PLN03140 ABC transporter G family member; Provisional
Probab=98.47 E-value=7.7e-08 Score=100.85 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=77.5
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce--eecCC--CC-----cccceEEEEEeeCCc---eeEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRK--TN-----TTTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~~~~~--~~-----~t~~~~~~~~~~~~~---~~~liDt 194 (242)
..++++++.+++|..++|+|+||+|||||+|.|+|.... ..|.. .+ .......+++.|.+. .+++.|+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 357788999999999999999999999999999997542 12211 11 111234678877642 3456666
Q ss_pred cccchhcc---CCCHHHHHHHHHHHHHHcCcccccceee-----ecCCccccccc
Q 026174 195 PGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVF-----DVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~-----D~~~g~~~~~i 241 (242)
.-+..... ..+.++....++++++.+++.++....+ ..++|++++++
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRv 1028 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL 1028 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHH
Confidence 55432211 2234455567899999999987655544 45788888765
No 423
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.47 E-value=4.2e-07 Score=74.82 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCccee-----------------ecCCCCcccceEEEEEe--eCCceeEEeeccccch
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-----------------VSRKTNTTTHEVLGVMT--KADTQICIFDTPGLML 199 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~liDtpG~~~ 199 (242)
...|+++|+.|+|||||++.|++..... .....+.|.......+. .....++++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 4578999999999999999997632110 00112344443333344 445688999999962
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.-.......+..+|.+++|+|+..|.+.
T Consensus 82 -----------~f~~~~~~~~~~~D~ailvVda~~g~~~ 109 (188)
T PF00009_consen 82 -----------DFIKEMIRGLRQADIAILVVDANDGIQP 109 (188)
T ss_dssp -----------HHHHHHHHHHTTSSEEEEEEETTTBSTH
T ss_pred -----------ceeecccceecccccceeeeeccccccc
Confidence 1244556668889999999999887654
No 424
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.46 E-value=1.2e-06 Score=69.35 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=46.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC--CceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|.+|||||||+|.+++..... ...+..+.......+... .-.+.++||||.... .. ..-.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~---~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY---------LE---VRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH---------HH---HHHH
Confidence 57899999999999999999876432 111211111111111111 135679999996211 00 0111
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-++.+++|+|.++.
T Consensus 69 ~~~~~d~~ilv~D~~~~ 85 (168)
T cd04119 69 FYKDTQGVLLVYDVTDR 85 (168)
T ss_pred HhccCCEEEEEEECCCH
Confidence 23456788888887654
No 425
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.5e-08 Score=80.29 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=70.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEE---------EEEeeC---CceeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---------GVMTKA---DTQICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~---------~~~~~~---~~~~~liDtp 195 (242)
.+.++++.+.+|..+.|.|+||+|||||++.|+|...+..++....+.+... .|+-.. ...++++++.
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL 96 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL 96 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence 3556789999999999999999999999999999887776654322221110 000000 0122334444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
-|....++- .-...+.++++.+++.++....+-.+|-++++.|
T Consensus 97 ~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRv 139 (209)
T COG4133 97 HFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRV 139 (209)
T ss_pred HHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHH
Confidence 433222221 1134678899999999988888888766666654
No 426
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.6e-07 Score=79.98 Aligned_cols=111 Identities=10% Similarity=0.118 Sum_probs=74.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--------Cc---ccceEEEEEeeC-----CceeE-
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--------NT---TTHEVLGVMTKA-----DTQIC- 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--------~~---t~~~~~~~~~~~-----~~~~~- 190 (242)
.++++++.+++|...+|+|+||+|||||++.+++...+..+... +. ..+..+|++... .....
T Consensus 46 iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v 125 (257)
T COG1119 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETV 125 (257)
T ss_pred eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccccc
Confidence 36678999999999999999999999999999998776533211 11 122334443310 01111
Q ss_pred -------EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 -------IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 -------liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..++.|+... ...++...++..+++.+++.++....+-.+|-++++.+
T Consensus 126 ~dvVlSg~~~siG~y~~---~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 126 RDVVLSGFFASIGIYQE---DLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred ceeeeeccccccccccc---CCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 2344444431 12244467888999999999988888888887777654
No 427
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.46 E-value=7.5e-08 Score=84.71 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=42.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA 185 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~ 185 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.... ...+++++|.
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i---~g~i~yv~q~ 106 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH---SGRISFSSQF 106 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE---CCEEEEEeCc
Confidence 567789999999999999999999999999999987665543321 1135666654
No 428
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.45 E-value=1.2e-06 Score=70.81 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+++++|++|||||||++.+.+..........+. ....+......+.++|+||.... .. ....
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~---------~~---~~~~ 77 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTL---------RP---YWRN 77 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHH---------HH---HHHH
Confidence 45678999999999999999998643322221111 11112223346789999996310 11 1122
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-++.+++|+|++++
T Consensus 78 ~~~~~d~~i~v~d~~~~ 94 (173)
T cd04154 78 YFESTDALIWVVDSSDR 94 (173)
T ss_pred HhCCCCEEEEEEECCCH
Confidence 34567888888888765
No 429
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.45 E-value=8e-07 Score=74.04 Aligned_cols=91 Identities=14% Similarity=0.303 Sum_probs=52.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+|+++|.+|||||||++.+.+...... ..|.++.......+...+ -.+.++||||..... .....+ .......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e---~~~~~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQE---WMDPRFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhH---HHHHHHh
Confidence 578999999999999999987654322 122222221111122222 245799999974211 111111 1112233
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-+|.+++|+|..++.
T Consensus 77 ~~~~ad~iilv~D~~~~~ 94 (198)
T cd04142 77 GLRNSRAFILVYDICSPD 94 (198)
T ss_pred hhccCCEEEEEEECCCHH
Confidence 456689999999998764
No 430
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.45 E-value=7.4e-08 Score=92.43 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 35667899999999999999999999999999998776554
No 431
>PLN03118 Rab family protein; Provisional
Probab=98.44 E-value=6.4e-07 Score=75.00 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeecccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGL 197 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~ 197 (242)
...+++++|.+|||||||++.+++..........+.+. ....+...+ -.+.++||||.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDF--KIKQLTVGGKRLKLTIWDTAGQ 72 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEE--EEEEEEECCEEEEEEEEECCCc
Confidence 35678999999999999999998865432222222211 111122222 25679999996
No 432
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.44 E-value=3.7e-07 Score=84.69 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=57.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceee------------------------------cCCCCcccceEEEEEeeCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 186 (242)
++..+++++|.+++|||||++.|+....... ...+++|+......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4567799999999999999999974321100 0135677766555555555
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
..+.++||||.... ...++..+..+|.+++|+|+.+
T Consensus 84 ~~i~liDtpG~~~~------------~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 84 YYFTIVDCPGHRDF------------VKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred eEEEEEECCCcccc------------hhhHhhchhcCCEEEEEEEccc
Confidence 67899999995211 1122333556899999999987
No 433
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.44 E-value=8e-07 Score=70.34 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=47.9
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEe-eCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
++++|.+|||||||+|.+.+..........+.+ ...+. .....+.++|+||... ... .....+
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~l~i~D~~G~~~---------~~~---~~~~~~ 65 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN----VEMLQLEKHLSLTVWDVGGQEK---------MRT---VWKCYL 65 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccCccCcc----eEEEEeCCceEEEEEECCCCHh---------HHH---HHHHHh
Confidence 679999999999999999987543322211111 11122 1223678999999631 111 111234
Q ss_pred CcccccceeeecCCcc
Q 026174 221 NLFEVLMVVFDVHRHL 236 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~ 236 (242)
.-++.+++|+|++++.
T Consensus 66 ~~~~~iv~v~D~~~~~ 81 (160)
T cd04156 66 ENTDGLVYVVDSSDEA 81 (160)
T ss_pred ccCCEEEEEEECCcHH
Confidence 5568888888987754
No 434
>PLN03140 ABC transporter G family member; Provisional
Probab=98.43 E-value=2.1e-07 Score=97.67 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=75.8
Q ss_pred hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee---ecCCC--Ccc-----cceEEEEEeeCCc---eeEE
Q 026174 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKT--NTT-----THEVLGVMTKADT---QICI 191 (242)
Q Consensus 125 ~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---~~~~~--~~t-----~~~~~~~~~~~~~---~~~l 191 (242)
....++++++.+++|..++|+|+||+|||||+++|+|...+. .|... +.. .+...+|+.|.+. .+++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 345789999999999999999999999999999999986543 22211 111 1245677777643 3467
Q ss_pred eeccccchhccC----------CCHHH----------H--------------HHHHHHHHHHcCcccccc-----eeeec
Q 026174 192 FDTPGLMLNKSG----------YSHKD----------V--------------KVRVESAWSAVNLFEVLM-----VVFDV 232 (242)
Q Consensus 192 iDtpG~~~~~~~----------~~~~~----------~--------------~~~i~~~l~~~~l~d~ll-----~v~D~ 232 (242)
.||..+.....+ ....+ + +..++.+++.+|+.++.. ..+.-
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 777665432211 01111 0 113567889999987542 22345
Q ss_pred CCcccccccC
Q 026174 233 HRHLTRFVIC 242 (242)
Q Consensus 233 ~~g~~~~~i~ 242 (242)
.+|+++++++
T Consensus 337 lSGGerkRVs 346 (1470)
T PLN03140 337 ISGGQKKRVT 346 (1470)
T ss_pred CCcccceeee
Confidence 7888888763
No 435
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.43 E-value=1.3e-07 Score=90.36 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=65.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCcee--EEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADTQI--CIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~~~--~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|... + ...+...++++|+...+ ++.|+
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n- 416 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE- 416 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-
Confidence 35667889999999999999999999999999998766544321 1 11223456666643211 12222
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-----eecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----FDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----~D~~~g~~~~~i 241 (242)
+ .....+.+.++++.+++.+.+... -..++|+++|++
T Consensus 417 -------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 417 -------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred -------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 0 012234567788888876543221 135778888775
No 436
>CHL00071 tufA elongation factor Tu
Probab=98.43 E-value=5.2e-07 Score=83.37 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCccee---------------ecCCCCcccceEEEEEeeCCceeEEeeccccchhc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA---------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
++...++++|.+++|||||+|.|++..... .....+.|.......+...+..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 456779999999999999999998742211 01123444443222222334567899999952
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..++..+...|.+++|+|+..|.+.
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~ 114 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMP 114 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcH
Confidence 2244455566678999999999877643
No 437
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.43 E-value=6.4e-07 Score=71.02 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|.+|+|||||++.+.+.... .....++.......+...+ ..+.++||||.... ......
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~-- 69 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF---------SAMREQ-- 69 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcch---------hHHHHH--
Confidence 46899999999999999999875432 2222222221111122222 24678999995311 011111
Q ss_pred HHcCcccccceeeecCCcc
Q 026174 218 SAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-.+.+++|+|+++..
T Consensus 70 -~~~~~~~~ilv~d~~~~~ 87 (164)
T cd04145 70 -YMRTGEGFLLVFSVTDRG 87 (164)
T ss_pred -HHhhCCEEEEEEECCCHH
Confidence 223457777777876643
No 438
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.43 E-value=1.5e-07 Score=77.06 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=77.9
Q ss_pred hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-------------Cc----c------cceEEEE
Q 026174 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------------NT----T------THEVLGV 181 (242)
Q Consensus 125 ~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-------------~~----t------~~~~~~~ 181 (242)
..+.+..++.....|..|.|+|.||+||||++.+|.-...+..+... |. . .++..++
T Consensus 18 ~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~m 97 (256)
T COG4598 18 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGM 97 (256)
T ss_pred cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhH
Confidence 55677888999999999999999999999999999766555422110 11 0 0123444
Q ss_pred EeeCCc---eeE----EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 182 MTKADT---QIC----IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 182 ~~~~~~---~~~----liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
++|..+ +++ +++.|- ...+.+..+..+++..++..+|+.+.....--.++|+++|.+
T Consensus 98 VFQ~FNLWsHmtvLeNViEaPv---hVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 98 VFQHFNLWSHMTVLENVIEAPV---HVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred hhhhcchhHHHHHHHHHHhcch---HhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 544332 222 233332 334567888889999999999999877776677888877754
No 439
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.43 E-value=1.1e-06 Score=70.10 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|++|+|||||++.+.+........ +..+.......+...+ -.+.++||||... ... ...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~---~~~ 70 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQER---------FRT---ITQ 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCChHH---------HHH---HHH
Confidence 468899999999999999997654322111 1111111111122222 2567999999421 111 111
Q ss_pred HHcCcccccceeeecCCcc
Q 026174 218 SAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.-.|.+++++|.+++.
T Consensus 71 ~~~~~~d~~llv~d~~~~~ 89 (165)
T cd01864 71 SYYRSANGAIIAYDITRRS 89 (165)
T ss_pred HHhccCCEEEEEEECcCHH
Confidence 2234567777888877653
No 440
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.43 E-value=7.8e-07 Score=70.58 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=46.8
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|||||||++.+.+....... .+..+.......+...+ ..+.++|+||... ... ....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~---~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER---------FRS---VTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHH---------HHH---hHHH
Confidence 5789999999999999999876532211 11111111111111122 2467999999521 011 1112
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+.-.+.+++++|..++.+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s 87 (161)
T cd04113 69 YYRGAAGALLVYDITNRTS 87 (161)
T ss_pred HhcCCCEEEEEEECCCHHH
Confidence 2345677888888776543
No 441
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.43 E-value=1.6e-06 Score=69.24 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|++|||||||++.+.+..... ...+..+.......+...+ -.+.++|+||... ... ..-
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~---~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER---------FRT---ITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHh---------HHH---HHH
Confidence 357899999999999999998754332 1122222111111122222 2467899999421 001 111
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+++.
T Consensus 70 ~~~~~~~~ii~v~d~~~~ 87 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQ 87 (166)
T ss_pred HHhCcCCEEEEEEECcCH
Confidence 234567888888888764
No 442
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.2e-07 Score=84.18 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=32.8
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
++++++.+.+|..++|+|+||+|||||+++|+|...
T Consensus 61 L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 556789999999999999999999999999999753
No 443
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.42 E-value=1.7e-07 Score=89.43 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=36.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35667899999999999999999999999999998776654
No 444
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.42 E-value=1e-07 Score=95.87 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=92.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--cc---------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--TT---------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--~t---------~~~~~~~~~~~~~---~~~liD 193 (242)
.+++++..+++++..|+.|+||+||||+++.|+|...++.|..-. .+ ....+||.+|.+. .++..+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 567789999999999999999999999999999988776554321 11 1234777777653 445566
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccccccC
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i~ 242 (242)
+.-++....+++..++.+.++..++.+++.+....-+-..+|++.|+++
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLS 708 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHH
Confidence 6777778888888899999999999999999888888889999988763
No 445
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.42 E-value=5.5e-07 Score=79.82 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=69.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeeccccch
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLML 199 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~ 199 (242)
..+..+||||.|||||||++|+|+..... .+..|++|.....+.+...+ ..+++.|..|+..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 45668999999999999999999987766 78889999887665544221 2568999999976
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
..+.- +---..+|..+.-.|.+++|+++..
T Consensus 97 GAs~G-----~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAG-----EGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccC-----cCchHHHHHhhhhccceeEEEEecC
Confidence 54321 1223467888888899999988764
No 446
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.42 E-value=1.2e-06 Score=70.97 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+++++|++|+|||||++.+.+..........+.+ ...+......+.++|+||... .... .-.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~~~---------~~~~---~~~ 78 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQES---------LRSS---WNT 78 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCCHH---------HHHH---HHH
Confidence 467899999999999999999765433222211211 112223345678999999631 0111 112
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-++.+++|+|++++
T Consensus 79 ~~~~~d~vi~V~D~s~~ 95 (174)
T cd04153 79 YYTNTDAVILVIDSTDR 95 (174)
T ss_pred HhhcCCEEEEEEECCCH
Confidence 34557888888888765
No 447
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.42 E-value=1.8e-07 Score=97.97 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=73.8
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc----eeecCCC--Cc-------ccceEEEEEeeCCc---eeE
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV----AAVSRKT--NT-------TTHEVLGVMTKADT---QIC 190 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~----~~~~~~~--~~-------t~~~~~~~~~~~~~---~~~ 190 (242)
..++++++.+++|..++|+|+||+|||||+|+|+|... +..|... +. ..+...+++.|.+. .++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 46888999999999999999999999999999999742 2222211 11 11223677777642 345
Q ss_pred Eeeccccchhcc-------CCCHHHHHHH-HHHHHHHcCcccccceee-----ecCCccccccc
Q 026174 191 IFDTPGLMLNKS-------GYSHKDVKVR-VESAWSAVNLFEVLMVVF-----DVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~-------~~~~~~~~~~-i~~~l~~~~l~d~ll~v~-----D~~~g~~~~~i 241 (242)
+.|+..+..... +.+.++..+. ++.+++.+++.+...-.+ .-++|++++++
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 666665532211 1233343333 466899999987654332 34788888765
No 448
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.42 E-value=6.7e-07 Score=77.86 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEEEcCCCCchhHHHHHHhCCcce--eecCC---------------CCcccceEEEEEeeCCceeEEeeccccchhccCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVA--AVSRK---------------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~--~~~~~---------------~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 204 (242)
++++|++|+|||||+|.|++.... ..+.. .+.+.......+.+.+..+.++||||....
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f---- 77 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF---- 77 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH----
Confidence 689999999999999999753211 01100 112222223334444557889999997421
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.......+..+|.+++|+|...+..
T Consensus 78 --------~~~~~~~l~~aD~~i~Vvd~~~g~~ 102 (268)
T cd04170 78 --------VGETRAALRAADAALVVVSAQSGVE 102 (268)
T ss_pred --------HHHHHHHHHHCCEEEEEEeCCCCCC
Confidence 1123334456788889999887654
No 449
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.41 E-value=1.1e-06 Score=69.38 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=48.0
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
++++|.+|||||||++.+.+..........+.+. ..+......+.++|+||.... .... ...+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~---------~~~~---~~~~~ 65 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKI---------RPLW---KHYYE 65 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhh---------HHHH---HHHhc
Confidence 6899999999999999999876322211112111 112223356789999996321 1111 12234
Q ss_pred cccccceeeecCCc
Q 026174 222 LFEVLMVVFDVHRH 235 (242)
Q Consensus 222 l~d~ll~v~D~~~g 235 (242)
-.+.+++|+|+.++
T Consensus 66 ~~~~~i~v~D~~~~ 79 (158)
T cd00878 66 NTNGIIFVVDSSDR 79 (158)
T ss_pred cCCEEEEEEECCCH
Confidence 46888889998765
No 450
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.41 E-value=1.5e-06 Score=69.20 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=46.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
..++++|.+|||||||+|.+.+...... ..+..+.......+...+ -.+.++|+||.... .... -
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~---~ 70 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY---------RAIT---S 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCChHHH---------HHHH---H
Confidence 3688999999999999999988654321 122222221111222222 24679999995310 0001 1
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+++.
T Consensus 71 ~~~~~~~~~i~v~d~~~~ 88 (165)
T cd01868 71 AYYRGAVGALLVYDITKK 88 (165)
T ss_pred HHHCCCCEEEEEEECcCH
Confidence 123345667777777653
No 451
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.41 E-value=4.3e-07 Score=73.36 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=49.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcce--------eec------CCCCcccceEEEEE-e----eCCceeEEeeccccchhc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVM-T----KADTQICIFDTPGLMLNK 201 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~--------~~~------~~~~~t~~~~~~~~-~----~~~~~~~liDtpG~~~~~ 201 (242)
.++++|.+|||||||++.+.+.... ... ...+.+.......+ + .....+.++||||....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 4789999999999999999863210 000 01122322221111 1 11234679999997421
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
..... ..+.-+|.+++|+|+.++.+
T Consensus 81 --------~~~~~---~~~~~ad~~i~v~D~~~~~~ 105 (179)
T cd01890 81 --------SYEVS---RSLAACEGALLLVDATQGVE 105 (179)
T ss_pred --------HHHHH---HHHHhcCeEEEEEECCCCcc
Confidence 11122 23345789999999987654
No 452
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.41 E-value=1.5e-07 Score=89.30 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=45.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
.+++++..+.+|.++||||.||+|||||+++|+|...+..|... ......++++.|..
T Consensus 18 l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~-~~~~~~v~~l~Q~~ 75 (530)
T COG0488 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT-RPKGLRVGYLSQEP 75 (530)
T ss_pred eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe-ecCCceEEEeCCCC
Confidence 35667899999999999999999999999999998876555432 22224677887754
No 453
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=7.5e-08 Score=78.09 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=73.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC------------------CcccceEEEEEeeCC---c
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------------------NTTTHEVLGVMTKAD---T 187 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~------------------~~t~~~~~~~~~~~~---~ 187 (242)
++++++.++.|+.+++-|+||+|||||+++|-+-..++.|... ..-++.++||+.|.- +
T Consensus 27 ~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviP 106 (235)
T COG4778 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIP 106 (235)
T ss_pred eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhcc
Confidence 5567899999999999999999999999999875544433211 112334555554421 1
Q ss_pred eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeec-CCccccccc
Q 026174 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV-HRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~-~~g~~~~~i 241 (242)
.+.-+|...-..-..+.+.+.+..++..++..+++.+.++..--. .+|+++|.+
T Consensus 107 RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 107 RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 222223222222334677888889999999999999866654433 566666654
No 454
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.39 E-value=1.6e-06 Score=69.85 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=48.8
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
++++|.+|||||||+|.+.+..........+.+ ...+......+.++|+||-.. ... .....+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~---------~~~---~~~~~~~ 65 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN---------FRG---IWVNYYA 65 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHH---------HHH---HHHHHHc
Confidence 679999999999999999986322222222222 112333445678999999521 111 1223456
Q ss_pred cccccceeeecCCc
Q 026174 222 LFEVLMVVFDVHRH 235 (242)
Q Consensus 222 l~d~ll~v~D~~~g 235 (242)
-++.+++|+|+++.
T Consensus 66 ~a~~ii~V~D~s~~ 79 (167)
T cd04161 66 EAHGLVFVVDSSDD 79 (167)
T ss_pred CCCEEEEEEECCch
Confidence 67888888888765
No 455
>PLN03130 ABC transporter C family member; Provisional
Probab=98.39 E-value=1e-07 Score=100.95 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=67.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|+++||||++|+|||||+++|.|...+..|.. .....+...++++|++.. .++.|+.
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNL 1333 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL 1333 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHh
Confidence 4667889999999999999999999999999999866654432 222334567888876431 2344443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccce-------e----eecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-------V----FDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-------v----~D~~~g~~~~~i~ 242 (242)
.... ..+. +.+.++++..++.+.+.- . -..++||++|.+|
T Consensus 1334 d~~~---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1334 DPFN---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred CcCC---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 3211 1122 335555555555433221 1 1247888888775
No 456
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.39 E-value=1.2e-06 Score=70.35 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|++|||||||++.+.+..... ...+..+.......+...+ -.+.++|+||.... ... ..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~~~---~~ 70 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF---------RTI---TT 70 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHHH---------HHH---HH
Confidence 468999999999999999998765321 1112111111111122222 24578999994211 111 11
Q ss_pred HHcCcccccceeeecCCccc
Q 026174 218 SAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~~ 237 (242)
..+.-+|.+++++|+.++.+
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s 90 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKS 90 (167)
T ss_pred HHhCCCCEEEEEEECcCHHH
Confidence 23455788888888876543
No 457
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.39 E-value=1.1e-07 Score=93.39 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|..++|+|+||+|||||++.|+|...+..|... ....+..+++++|+.. ..++.|+.-
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 569 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL 569 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHh
Confidence 5667899999999999999999999999999998777655332 1122346788887643 124455554
Q ss_pred c
Q 026174 197 L 197 (242)
Q Consensus 197 ~ 197 (242)
+
T Consensus 570 l 570 (708)
T TIGR01193 570 L 570 (708)
T ss_pred c
Confidence 4
No 458
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=1.1e-07 Score=79.51 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=33.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|...
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4567899999999999999999999999999999866
No 459
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.37 E-value=2e-07 Score=90.61 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=36.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~ 169 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|...+..|.
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~ 59 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR 59 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 466789999999999999999999999999999987665554
No 460
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.37 E-value=2.6e-06 Score=68.06 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=47.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|||||||+|.+.+..... ...+..+.......+...+. .+.++|+||.... .. ....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~---~~~~ 68 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF---------QS---LGVA 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH---------Hh---HHHH
Confidence 57899999999999999998764321 11111111111111222222 3568999995211 00 1122
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+..++.+++++|+.++.
T Consensus 69 ~~~~~d~~i~v~d~~~~~ 86 (172)
T cd01862 69 FYRGADCCVLVYDVTNPK 86 (172)
T ss_pred HhcCCCEEEEEEECCCHH
Confidence 345578888888887653
No 461
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.37 E-value=1e-07 Score=93.58 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=36.1
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~ 169 (242)
++++++.+++|..++++|+||+|||||++.|+|...+..|.
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 55678999999999999999999999999999987766553
No 462
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.37 E-value=1.6e-06 Score=69.45 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=44.6
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|.+|||||||+|.+.+...... ..+..+.......+...+ -.+.++||||.... . .....
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~---------~---~~~~~ 69 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY---------R---TITTA 69 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H---HHHHH
Confidence 578999999999999999988654211 111111111111111222 25679999995311 0 01122
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-.+.+++|+|+++.
T Consensus 70 ~~~~~~~~l~v~d~~~~ 86 (165)
T cd01865 70 YYRGAMGFILMYDITNE 86 (165)
T ss_pred HccCCcEEEEEEECCCH
Confidence 34455666666666543
No 463
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.37 E-value=8.3e-07 Score=70.56 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=33.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
+|+++|++|||||||+|++.+...... ...++.......+...+ -.+.++||||..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD--YDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--cCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 578999999999999999987654321 11122111111121222 245689999963
No 464
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.37 E-value=2.3e-06 Score=73.55 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..++++|++|+||||++++|+|..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 367899999999999999999864
No 465
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.37 E-value=2.4e-06 Score=70.36 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=46.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEE-EEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG-VMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
+++++|.+|||||||++.+.+..... +....++...... .+...+ -.+.++||||-.. ... ...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~---~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER---------FRS---VTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH---------HHH---hhH
Confidence 57899999999999999998754321 1111121111111 122222 2567999999421 101 012
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.+.
T Consensus 69 ~~~~~ad~~i~v~D~~~~ 86 (191)
T cd04112 69 AYYRDAHALLLLYDITNK 86 (191)
T ss_pred HHccCCCEEEEEEECCCH
Confidence 234556788888887664
No 466
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.37 E-value=1.5e-06 Score=70.00 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=46.3
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
++++|.+|||||||++.+.+.... . ...|.......+....-.+.++|+||.... .. .+...+.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~---------~~---~~~~~~~ 65 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKL---------RP---LWKHYYL 65 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhc---------ch---HHHHHhc
Confidence 679999999999999999886322 1 222222222223333446789999996311 00 1111234
Q ss_pred cccccceeeecCCc
Q 026174 222 LFEVLMVVFDVHRH 235 (242)
Q Consensus 222 l~d~ll~v~D~~~g 235 (242)
-++.+++|+|.++.
T Consensus 66 ~ad~ii~V~D~s~~ 79 (169)
T cd04158 66 NTQAVVFVVDSSHR 79 (169)
T ss_pred cCCEEEEEEeCCcH
Confidence 46777777777654
No 467
>PLN03232 ABC transporter C family member; Provisional
Probab=98.37 E-value=1.5e-07 Score=99.33 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=67.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC----------CcccceEEEEEeeCCcee--EEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----------NTTTHEVLGVMTKADTQI--CIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~--~liDtp 195 (242)
.++++++.+++|+++||||++|+|||||++.|.|...+..|... ....+...++++|++.-+ ++.|+.
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 46678889999999999999999999999999998766544321 222335677888764211 333333
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccce-------e----eecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-------V----FDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-------v----~D~~~g~~~~~i~ 242 (242)
.... ..+. +.+.++++..++.+.+.- . -..++|+++|.+|
T Consensus 1331 ~~~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1331 DPFS---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred CCCC---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 2211 1222 335555555555443321 1 1347888888775
No 468
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=2.6e-06 Score=68.02 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
-..++++|++|||||||++.+.+..... +..+..+.......+...+. .+.++|+||.... .. ..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~---~~ 73 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF---------RS---IT 73 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH---------HH---HH
Confidence 4568999999999999999998643321 11121111111111222222 3568899985210 00 11
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-.+.+++++|...+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~ 92 (169)
T cd04114 74 QSYYRSANALILTYDITCE 92 (169)
T ss_pred HHHhcCCCEEEEEEECcCH
Confidence 1234456677777776543
No 469
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.36 E-value=1.4e-06 Score=83.87 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=58.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceee--cCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+|+++|.+|+|||||+|.|+|...... ....+.|......++...+..+.++|+||.. .-+..++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe------------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE------------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH------------HHHHHHHh
Confidence 589999999999999999998542111 1223445443333344444567899999952 22345566
Q ss_pred HcCcccccceeeecCCcccc
Q 026174 219 AVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~~ 238 (242)
.+.-.|.+++|+|+..|.+.
T Consensus 70 g~~~aD~aILVVDa~~G~~~ 89 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMT 89 (581)
T ss_pred hhccCCEEEEEEECCCCCcH
Confidence 67778999999999887543
No 470
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.36 E-value=1.6e-06 Score=68.06 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=46.1
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC--CceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
++++|++|||||||++.+.+... .+....++........... .-.+.++|+||.... ...... .
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~---~ 67 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF---------SAMRDL---Y 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH---------HHHHHH---H
Confidence 68999999999999999987652 2222223323222222222 124678999996321 111111 2
Q ss_pred cCcccccceeeecCCc
Q 026174 220 VNLFEVLMVVFDVHRH 235 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g 235 (242)
+.-.+.+++++|..++
T Consensus 68 ~~~~~~~i~v~d~~~~ 83 (160)
T cd00876 68 IRQGDGFILVYSITDR 83 (160)
T ss_pred HhcCCEEEEEEECCCH
Confidence 3345777778787654
No 471
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.36 E-value=1.6e-07 Score=90.43 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=35.6
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
++++++.+++|..++++|+||+|||||++.|+|...+..|
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 5567899999999999999999999999999998776554
No 472
>PRK12735 elongation factor Tu; Reviewed
Probab=98.36 E-value=1.3e-06 Score=80.35 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=58.7
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcc------e-e--------ecCCCCcccceEEEEEeeCCceeEEeeccccchh
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV------A-A--------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~------~-~--------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
-++...++++|.+++|||||++.|++... . . .....+.|.......+...+..+.++||||..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--
Confidence 35667899999999999999999986210 0 0 00123444443222222334577899999962
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..+...+...|.+++|+|+..|.+.
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVvda~~g~~~ 114 (396)
T PRK12735 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMP 114 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCch
Confidence 2234555566678999999999876543
No 473
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.35 E-value=3.7e-07 Score=73.92 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=43.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA 185 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~ 185 (242)
.++++++.+.+|.+++++|+||+|||||++.|+|...+..|....... ...++++|.
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~ 72 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQR 72 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCC
Confidence 456788999999999999999999999999999987665554322221 345666654
No 474
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.35 E-value=2e-07 Score=89.31 Aligned_cols=107 Identities=8% Similarity=0.051 Sum_probs=66.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCceeEEeecccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|..... ..+...++++|+.. + +-||...
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~-l-f~~ti~~ 434 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH-L-FDDLIGP 434 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChh-h-hhhhhhc
Confidence 3566789999999999999999999999999999877665532211 11233455555321 1 1122211
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCccccccee------eecCCccccccc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV------FDVHRHLTRFVI 241 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v------~D~~~g~~~~~i 241 (242)
+. .....++.+.++++.+++.+.+... ...+||+++|.+
T Consensus 435 ---n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 435 ---DE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred ---cc--ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 10 1122345677888888887655322 245778888775
No 475
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.4e-08 Score=89.43 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=59.4
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCce--eEEeec
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADTQ--ICIFDT 194 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~~--~~liDt 194 (242)
..++++++.+..|++++|+|+||||||||++.|.|...++.|+..... ....++++.|...- .++.|+
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 356778999999999999999999999999999986655544322111 11233334443211 123333
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCccccccee
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV 229 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v 229 (242)
.-+-.+. .-.+.+.++++++++.+++.-.
T Consensus 432 L~lA~~~------AsDEel~~aL~qvgL~~l~~~~ 460 (573)
T COG4987 432 LRLANPD------ASDEELWAALQQVGLEKLLESA 460 (573)
T ss_pred HhhcCCC------CCHHHHHHHHHHcCHHHHHHhC
Confidence 3222111 1135577788888887765543
No 476
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.34 E-value=1.6e-06 Score=68.32 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=33.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeecccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGL 197 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~ 197 (242)
+++++|.+|||||||+|.+.+..... ....+........+...+. .+.++||+|.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCC
Confidence 57899999999999999998764321 1111211111111222222 3568999995
No 477
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.34 E-value=8.8e-07 Score=76.00 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=51.7
Q ss_pred EEEEcCCCCchhHHHHHHhCCcce--eec---------C------CCCcccceEEEEEeeCCceeEEeeccccchhccCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVA--AVS---------R------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~--~~~---------~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 204 (242)
++++|.+|+|||||+++|+..... ..+ + ..+.+.......+...+..+.++||||....
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f---- 77 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF---- 77 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch----
Confidence 689999999999999999753211 001 0 0112222223334455567899999998421
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.......+...|.+++|+|+.+|.+
T Consensus 78 --------~~~~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 78 --------IAEVERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred --------HHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 1122334455688889999888754
No 478
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.34 E-value=1.6e-06 Score=73.76 Aligned_cols=84 Identities=15% Similarity=0.378 Sum_probs=55.0
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcce-eecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
....++..++++|++|+|||||+|.|.+.... ..+...++ ..........+.++||||..
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~-------------- 94 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI-------------- 94 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH--------------
Confidence 44678889999999999999999999875221 12222221 11122234577899999742
Q ss_pred HHHHHHHcCcccccceeeecCCccc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
..+++....+|++++++|...+..
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~ 118 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFE 118 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCC
Confidence 233344466788888888876654
No 479
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.34 E-value=2.2e-06 Score=68.03 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=46.6
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH-HHHc
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA-WSAV 220 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~-l~~~ 220 (242)
++++|.+|||||||++.+........ .+ |.......+...+..+.++||||... .... ...+
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~ 64 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQTS-------------IRPYWRCYY 64 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc--CC--ccCcCeEEEEECCEEEEEEECCCCHH-------------HHHHHHHHh
Confidence 67999999999999999966543221 11 11111112223345678999999631 1111 1234
Q ss_pred CcccccceeeecCCc
Q 026174 221 NLFEVLMVVFDVHRH 235 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g 235 (242)
.-++.+++|+|.++.
T Consensus 65 ~~~~~ii~v~d~~~~ 79 (158)
T cd04151 65 SNTDAIIYVVDSTDR 79 (158)
T ss_pred cCCCEEEEEEECCCH
Confidence 557888888887664
No 480
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.32 E-value=1.5e-06 Score=69.55 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+|+++|.+|||||||+|.+++...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f 26 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4688999999999999999987543
No 481
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.32 E-value=2.1e-06 Score=67.81 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=33.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeecccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGL 197 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~ 197 (242)
+++++|++|||||||++.++...... ....++............ ..+.++|+||.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 58 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCCh
Confidence 57899999999999999998754331 222222211111111221 24678999995
No 482
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.32 E-value=1.8e-06 Score=68.32 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+++++|++|+|||||+++|.|.... ...| + ...+.+ ..|||||-+.... .....++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----~~KT---q-~i~~~~----~~IDTPGEyiE~~--------~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----YKKT---Q-AIEYYD----NTIDTPGEYIENP--------RFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----cCcc---c-eeEecc----cEEECChhheeCH--------HHHHHHHHH
Confidence 46899999999999999999985432 1111 1 112211 3599999765432 223445555
Q ss_pred cCcccccceeeecCCccc
Q 026174 220 VNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~~ 237 (242)
..-+|.++++.|+.++..
T Consensus 61 a~dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRS 78 (143)
T ss_pred HhhCCEEEEEecCCCCCc
Confidence 667899999999987653
No 483
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.32 E-value=2.4e-07 Score=97.86 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=67.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|+++||||++|+|||||+++|.+...+..|.. .....+...++++|++.. .++.|+.
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NL 1380 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHc
Confidence 4667899999999999999999999999999999766554422 222334567778876431 1344443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccc-------ceee----ecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVL-------MVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-------l~v~----D~~~g~~~~~i~ 242 (242)
... ...+.+ .+.++++.+++.+.+ ...+ ..++||++|.+|
T Consensus 1381 dp~---~~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1381 DPF---SQYSDE----EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred Ccc---cCCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 211 112333 345555555554322 2223 347888888875
No 484
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.32 E-value=2.1e-06 Score=68.85 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=47.4
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEE-EeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
+++++|.+|||||||+|.+.+...+.. .+.+........ +....-.+.++||||.... .. .+...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~---~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQD---------RA---NLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchhh---------hH---HHhhh
Confidence 578999999999999999988654322 221111111111 1112235679999996321 01 11222
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+.-++.+++|+|..++.
T Consensus 68 ~~~ad~~ilv~d~~~~~ 84 (166)
T cd01893 68 IRKANVICLVYSVDRPS 84 (166)
T ss_pred cccCCEEEEEEECCCHH
Confidence 35567777888876543
No 485
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.31 E-value=4.4e-07 Score=71.86 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=56.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC----------------CceeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA----------------DTQICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~l 191 (242)
.++++++.+++|..++++|+||+|||||+++|+|...+..|....... ...+++++- ++.+.+
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQLSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 356678999999999999999999999999999987665553322221 244555431 245567
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
+|.|-- +++... ...+.+++..++
T Consensus 94 lDEP~~-----~LD~~~-~~~l~~~l~~~~ 117 (144)
T cd03221 94 LDEPTN-----HLDLES-IEALEEALKEYP 117 (144)
T ss_pred EeCCcc-----CCCHHH-HHHHHHHHHHcC
Confidence 777753 333333 344555555553
No 486
>PTZ00243 ABC transporter; Provisional
Probab=98.31 E-value=2.3e-07 Score=98.14 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=68.8
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCcee--EEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADTQI--CIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~--~liDtpG 196 (242)
++++++.+++|.+++|||++|+|||||+++|+|...+..|.. +....+..+++++|++..+ ++.|+.-
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId 1405 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC
Confidence 566899999999999999999999999999999876654432 2223345678888764211 2333332
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccce-------ee----ecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-------VF----DVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-------v~----D~~~g~~~~~i~ 242 (242)
.. ...+ .+.+.++++.+++.+.+.- .+ ..+||+++|.||
T Consensus 1406 p~---~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1406 PF---LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred cc---cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 11 1122 2446667777776554322 12 347888888775
No 487
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.31 E-value=3.4e-06 Score=66.37 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=45.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|++|+|||||+|.+.+...... ..+..+.......+.... ..+.++|+||-... ......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~--- 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK-HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY---------HALGPI--- 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCccceeEEEEEEEECCEEEEEEEEECCchHHH---------HHhhHH---
Confidence 578999999999999999987654321 111111111111111111 24679999994211 000111
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-.+.+++|+|.+++.
T Consensus 69 ~~~~~~~~i~v~d~~~~~ 86 (162)
T cd04123 69 YYRDADGAILVYDITDAD 86 (162)
T ss_pred HhccCCEEEEEEECCCHH
Confidence 123457778888876653
No 488
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.30 E-value=1.9e-06 Score=75.24 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcc--eeec-------------CCC------CcccceEEEEEeeCCceeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKV--AAVS-------------RKT------NTTTHEVLGVMTKADTQICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~--~~~~-------------~~~------~~t~~~~~~~~~~~~~~~~liDtpG~~ 198 (242)
..|+++|++|+|||||+++|+.... ...+ +.. +.+.......+...+..+.++||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4689999999999999999974211 1111 100 111111222344445678999999963
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.. . ......+.-+|.+++|+|+..+.+
T Consensus 83 df---------~---~~~~~~l~~aD~~IlVvda~~g~~ 109 (267)
T cd04169 83 DF---------S---EDTYRTLTAVDSAVMVIDAAKGVE 109 (267)
T ss_pred HH---------H---HHHHHHHHHCCEEEEEEECCCCcc
Confidence 21 1 122333455788899999887654
No 489
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.30 E-value=3.9e-06 Score=67.76 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH-
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA- 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~- 216 (242)
+...++++|.+|||||||++.+........ .+..+.... .+....-.+.++||||... ....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~-------------~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVE--TVTYKNVKFNVWDVGGQDK-------------IRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccceE--EEEECCEEEEEEECCCCHH-------------HHHHH
Confidence 346789999999999999999976433221 222222111 1222334678999999631 1111
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
-..+.-++.+++|+|+++.
T Consensus 71 ~~~~~~a~~ii~v~D~t~~ 89 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADR 89 (168)
T ss_pred HHHhccCCEEEEEEeCCch
Confidence 1233456788888887664
No 490
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.30 E-value=8.8e-07 Score=70.74 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=46.3
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
++++|.+|||||||++.++..... +....++.......+...+. .+.++|+||...... . .....
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~-------~~~~~ 68 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT----E-------QLERS 68 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----c-------hHHHH
Confidence 679999999999999998764321 22222221111111212222 457999999752100 0 11112
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+..+|.+++++|++++.
T Consensus 69 ~~~~d~~i~v~d~~~~~ 85 (165)
T cd04146 69 IRWADGFVLVYSITDRS 85 (165)
T ss_pred HHhCCEEEEEEECCCHH
Confidence 34468888888887754
No 491
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.30 E-value=2e-07 Score=77.34 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=36.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc--ceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK--VAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~--~~~~~ 168 (242)
.++++++.+.+|..++|+|+||+|||||++.|+|.. .+..|
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G 66 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 466789999999999999999999999999999987 65544
No 492
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.29 E-value=2.6e-06 Score=81.98 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=59.9
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-eeEEeeccccchhccCCCHHHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
..+...++++|.+|+|||||++.|.+.... .+..++.|.+.....+...+. .+.++||||.... ...
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F------~~~----- 151 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF------TSM----- 151 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcch------hhH-----
Confidence 346678999999999999999999886543 333445555433323333333 7899999996321 010
Q ss_pred HHHHHcCcccccceeeecCCccccc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
........|.+++|+|+..|.+.+
T Consensus 152 -r~rga~~aDiaILVVda~dgv~~q 175 (587)
T TIGR00487 152 -RARGAKVTDIVVLVVAADDGVMPQ 175 (587)
T ss_pred -HHhhhccCCEEEEEEECCCCCCHh
Confidence 112456778999999988776443
No 493
>PRK13409 putative ATPase RIL; Provisional
Probab=98.29 E-value=3.8e-07 Score=87.94 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=66.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-------------Cccc----------ceEEEEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------------NTTT----------HEVLGVMTK 184 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-------------~~t~----------~~~~~~~~~ 184 (242)
.++++. .+.+|..++|+|+||+|||||++.|+|...+..|... +... ....++.++
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q 167 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ 167 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence 466676 7899999999999999999999999998777655532 1100 001111111
Q ss_pred CCceeEEeeccccchhccC---CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 185 ADTQICIFDTPGLMLNKSG---YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 185 ~~~~~~liDtpG~~~~~~~---~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
. +...|.++.. +. ....+....+.++++.+++.+.....+..+||+++|.+
T Consensus 168 ~-----~~~~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 168 Y-----VDLIPKVFKG-KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred c-----hhhhhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 0 0011111000 00 00112345678899999998877777888999988875
No 494
>PLN03232 ABC transporter C family member; Provisional
Probab=98.28 E-value=2.9e-07 Score=97.12 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCH
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSH 206 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~ 206 (242)
++++++.+++|..++|+|++|+|||||+++|+|...+..|.. ...+..++|+.|++. ..++.|+.-+..+ .+.
T Consensus 633 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i--~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~---~~~ 707 (1495)
T PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS--VVIRGSVAYVPQVSWIFNATVRENILFGSD---FES 707 (1495)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE--EEecCcEEEEcCccccccccHHHHhhcCCc---cCH
Confidence 567899999999999999999999999999999876654432 233446788887643 2356666655322 222
Q ss_pred HHHHHHHHHHHHHcCccccc-------ceee----ecCCcccccccC
Q 026174 207 KDVKVRVESAWSAVNLFEVL-------MVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 207 ~~~~~~i~~~l~~~~l~d~l-------l~v~----D~~~g~~~~~i~ 242 (242)
+++.++++..++.+.+ .-.+ ..++|+++|+|+
T Consensus 708 ----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 708 ----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred ----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 3344455544443221 1112 247888888763
No 495
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=6.3e-07 Score=91.05 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=81.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee-------ecCCC--CcccceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-------VSRKT--NTTTHEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-------~~~~~--~~t~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++...+|...+|+|.||+|||||+|.|+|+...- +++.| ..+-.+..||+.|.+- .+++.++.
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL 885 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESL 885 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHH
Confidence 477789999999999999999999999999999985322 22222 2345567899988764 45677777
Q ss_pred ccchhcc---CCCHHHHHHHHHHHHHHcCcccccceeeec----CCcccccc
Q 026174 196 GLMLNKS---GYSHKDVKVRVESAWSAVNLFEVLMVVFDV----HRHLTRFV 240 (242)
Q Consensus 196 G~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~----~~g~~~~~ 240 (242)
-+..-+. ..+.++..+.+++.++.++|.++...++-. ++..+|++
T Consensus 886 ~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 886 RFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhce
Confidence 6643222 345566668899999999998766666555 55555554
No 496
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.28 E-value=2.7e-06 Score=69.63 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=46.3
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
+++++|.+|||||||+|.+.+...... ..+..+.......+...+ -.+.++|++|.... .. ....
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~---------~~---~~~~ 68 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSES-TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF---------RS---LNNS 68 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH---------Hh---hHHH
Confidence 578999999999999999987654321 111111111111122222 24578999995311 00 1122
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-++.+++|+|.+++.
T Consensus 69 ~~~~~d~iilv~d~~~~~ 86 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQE 86 (188)
T ss_pred HccCCCEEEEEEECcCHH
Confidence 344567778888876644
No 497
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.28 E-value=2.8e-06 Score=67.82 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeec-CCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.++++|.+|||||||++.+.+....... ...+.+.......+....-.+.++||+|.... .. ..-..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~---~~~~~ 69 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF---------QT---MHASY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh---------hh---hhHHH
Confidence 5789999999999999999765432111 00011111100001111124679999995311 00 11123
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+.-++.+++|+|.+++.
T Consensus 70 ~~~~d~~i~v~d~~~~~ 86 (161)
T cd04124 70 YHKAHACILVFDVTRKI 86 (161)
T ss_pred hCCCCEEEEEEECCCHH
Confidence 45667888888877654
No 498
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.27 E-value=2e-07 Score=97.91 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=34.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
.++++++.+++|.+++|||+||+|||||++.|.|...+
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 35667899999999999999999999999999997665
No 499
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.2e-06 Score=71.45 Aligned_cols=115 Identities=11% Similarity=0.138 Sum_probs=69.5
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------------cceEEEEEeeCCc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------------THEVLGVMTKADT 187 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------------~~~~~~~~~~~~~ 187 (242)
...++++|.+-+|+..+|||.||+|||||+++|.+...++.+...... .++.++++.|.+.
T Consensus 20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR 99 (258)
T ss_pred cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence 455667999999999999999999999999999998776543221110 1244666666542
Q ss_pred e---eEEee--ccccchhccC-CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 188 Q---ICIFD--TPGLMLNKSG-YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~---~~liD--tpG~~~~~~~-~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
. +.+-- +.|-..-..+ ..+..++..+.++++.+.+. +.+.-.--..+|+++|.+
T Consensus 100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL 160 (258)
T COG4107 100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL 160 (258)
T ss_pred ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH
Confidence 1 11111 1111111111 23455677788889988774 344444445666666543
No 500
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.27 E-value=3.2e-07 Score=96.79 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=66.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCcee--EEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADTQI--CIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~--~liDtp 195 (242)
.++++++.+++|.+++|||++|+|||||+++|+|... ..|.. +....+...++++|++..+ ++.|+.
T Consensus 1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHh
Confidence 3566899999999999999999999999999999754 22221 1223345677788764311 233332
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-------ee----cCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-------FD----VHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-------~D----~~~g~~~~~i~ 242 (242)
-. ....+ .+.+.++++.+++.+.+... +. .++||++|.+|
T Consensus 1313 dp---~~~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1313 DP---YEQWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred Cc---ccCCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence 11 11112 34566777777765433221 21 36888888775
Done!