Query 026174
Match_columns 242
No_of_seqs 273 out of 2465
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 99.8 3E-21 1E-25 168.2 3.2 160 24-201 11-179 (282)
2 2rcn_A Probable GTPase ENGC; Y 99.8 1.8E-21 6E-26 174.6 -3.8 179 22-239 127-321 (358)
3 3cnl_A YLQF, putative uncharac 99.7 5.7E-18 2E-22 145.9 7.2 129 36-201 21-158 (262)
4 1t9h_A YLOQ, probable GTPase E 99.7 2.7E-19 9.3E-24 157.5 -6.6 138 22-199 83-236 (307)
5 2yv5_A YJEQ protein; hydrolase 99.5 1.7E-15 5.9E-20 132.9 -0.3 182 22-240 76-295 (302)
6 3ec1_A YQEH GTPase; atnos1, at 99.5 5.2E-14 1.8E-18 126.7 7.8 124 45-200 80-225 (369)
7 2e87_A Hypothetical protein PH 99.4 2.5E-14 8.5E-19 128.0 3.4 177 45-236 66-260 (357)
8 3h2y_A GTPase family protein; 99.4 7.6E-14 2.6E-18 125.6 5.1 124 45-200 78-224 (368)
9 4a9a_A Ribosome-interacting GT 99.4 7.1E-13 2.4E-17 119.5 9.2 91 140-236 73-163 (376)
10 1mky_A Probable GTP-binding pr 99.4 1.8E-13 6.3E-18 125.6 4.1 159 62-237 117-278 (439)
11 2hjg_A GTP-binding protein ENG 99.3 3.7E-13 1.3E-17 123.5 3.9 155 62-239 118-274 (436)
12 3fvq_A Fe(3+) IONS import ATP- 99.3 1.9E-13 6.4E-18 122.5 1.7 114 128-241 19-147 (359)
13 3gfo_A Cobalt import ATP-bindi 99.3 2.9E-13 1E-17 117.2 2.4 114 128-241 23-152 (275)
14 3rlf_A Maltose/maltodextrin im 99.3 3.1E-13 1.1E-17 122.0 2.4 114 128-241 18-142 (381)
15 3tui_C Methionine import ATP-b 99.3 2.9E-13 1E-17 121.5 1.8 114 128-241 43-172 (366)
16 2pcj_A ABC transporter, lipopr 99.3 4E-13 1.4E-17 112.9 1.7 114 128-241 19-149 (224)
17 1v43_A Sugar-binding transport 99.3 8.2E-13 2.8E-17 119.0 3.4 114 128-241 26-150 (372)
18 4dcu_A GTP-binding protein ENG 99.3 1.3E-12 4.6E-17 120.4 4.4 156 62-239 138-294 (456)
19 1z47_A CYSA, putative ABC-tran 99.3 5.6E-13 1.9E-17 119.4 1.8 114 128-241 30-154 (355)
20 2it1_A 362AA long hypothetical 99.3 6.8E-13 2.3E-17 119.1 2.3 114 128-241 18-142 (362)
21 1u0l_A Probable GTPase ENGC; p 99.3 1.1E-12 3.9E-17 114.7 3.7 105 56-197 115-231 (301)
22 1wf3_A GTP-binding protein; GT 99.3 2E-11 6.9E-16 106.8 11.2 93 140-237 8-101 (301)
23 1oxx_K GLCV, glucose, ABC tran 99.3 9.6E-13 3.3E-17 117.8 2.6 114 128-241 20-149 (353)
24 2yyz_A Sugar ABC transporter, 99.3 6.6E-13 2.3E-17 119.1 1.2 114 128-241 18-142 (359)
25 2olj_A Amino acid ABC transpor 99.3 1.2E-12 4E-17 112.8 2.6 114 128-241 39-168 (263)
26 3tif_A Uncharacterized ABC tra 99.3 1.1E-12 3.9E-17 110.9 2.5 114 128-241 20-154 (235)
27 1g29_1 MALK, maltose transport 99.3 1.2E-12 4.2E-17 117.9 2.8 114 128-241 18-148 (372)
28 3iev_A GTP-binding protein ERA 99.3 1.4E-11 4.9E-16 108.0 9.5 99 137-237 8-107 (308)
29 1b0u_A Histidine permease; ABC 99.2 1.3E-12 4.3E-17 112.4 2.0 114 128-241 21-162 (262)
30 1vpl_A ABC transporter, ATP-bi 99.2 1.4E-12 4.8E-17 111.8 1.7 114 128-241 30-155 (256)
31 2gj8_A MNME, tRNA modification 99.2 5.7E-11 1.9E-15 94.8 10.3 96 138-237 3-98 (172)
32 1g6h_A High-affinity branched- 99.2 3E-12 1E-16 109.7 2.5 114 128-241 22-162 (257)
33 2nq2_C Hypothetical ABC transp 99.2 5.9E-12 2E-16 107.7 3.2 111 128-241 20-137 (253)
34 4g1u_C Hemin import ATP-bindin 99.2 4.6E-12 1.6E-16 109.2 1.4 112 128-241 26-150 (266)
35 3lxw_A GTPase IMAP family memb 99.2 2.7E-11 9.2E-16 102.9 6.2 97 137-234 19-117 (247)
36 3d31_A Sulfate/molybdate ABC t 99.2 2.9E-12 9.9E-17 114.5 -0.3 111 128-241 15-136 (348)
37 4dhe_A Probable GTP-binding pr 99.1 1.4E-10 4.6E-15 95.6 9.4 100 138-237 28-130 (223)
38 1sgw_A Putative ABC transporte 99.1 3.2E-12 1.1E-16 106.8 -0.5 111 128-241 24-142 (214)
39 3i8s_A Ferrous iron transport 99.1 1.1E-10 3.6E-15 100.7 8.9 95 139-234 3-97 (274)
40 2yz2_A Putative ABC transporte 99.1 3.5E-12 1.2E-16 109.8 -0.6 113 128-241 22-147 (266)
41 1ega_A Protein (GTP-binding pr 99.1 4.2E-11 1.4E-15 104.7 5.9 92 138-234 7-100 (301)
42 2xtp_A GTPase IMAP family memb 99.1 4.4E-10 1.5E-14 95.4 11.7 96 138-234 21-117 (260)
43 3iby_A Ferrous iron transport 99.1 2E-10 6.7E-15 98.2 9.3 94 140-234 2-95 (256)
44 2onk_A Molybdate/tungstate ABC 99.1 4.9E-12 1.7E-16 107.4 -1.0 110 129-241 15-135 (240)
45 2ihy_A ABC transporter, ATP-bi 99.1 9E-12 3.1E-16 108.1 0.6 114 128-241 36-170 (279)
46 1mky_A Probable GTP-binding pr 99.1 1.5E-10 5.2E-15 106.1 8.7 93 141-237 3-96 (439)
47 1ji0_A ABC transporter; ATP bi 99.1 1.3E-11 4.5E-16 104.7 0.9 113 128-241 21-148 (240)
48 3lxx_A GTPase IMAP family memb 99.1 4.1E-10 1.4E-14 94.5 10.0 96 137-234 27-124 (239)
49 2qtf_A Protein HFLX, GTP-bindi 99.1 3.7E-10 1.3E-14 101.4 9.9 91 141-236 181-271 (364)
50 2qi9_C Vitamin B12 import ATP- 99.1 3E-11 1E-15 103.1 2.0 108 128-241 15-135 (249)
51 2hjg_A GTP-binding protein ENG 99.0 2E-10 6.9E-15 105.2 6.3 93 140-237 4-97 (436)
52 3k53_A Ferrous iron transport 99.0 6.2E-10 2.1E-14 95.5 8.9 92 139-235 3-94 (271)
53 3gee_A MNME, tRNA modification 99.0 4.1E-10 1.4E-14 104.5 7.9 98 136-238 230-328 (476)
54 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 3E-10 1E-14 102.9 6.8 96 134-234 15-127 (392)
55 1svi_A GTP-binding protein YSX 99.0 9.7E-10 3.3E-14 88.3 8.7 97 138-237 22-120 (195)
56 4dcu_A GTP-binding protein ENG 99.0 5.8E-10 2E-14 102.7 7.8 95 139-237 23-117 (456)
57 3a1s_A Iron(II) transport prot 99.0 1.5E-09 5.1E-14 92.8 9.7 92 139-235 5-96 (258)
58 3pqc_A Probable GTP-binding pr 99.0 1.6E-09 5.6E-14 86.6 9.1 97 138-237 22-119 (195)
59 1xzp_A Probable tRNA modificat 99.0 3E-10 1E-14 105.5 5.2 97 137-237 241-338 (482)
60 1pui_A ENGB, probable GTP-bind 99.0 2E-09 7E-14 87.7 9.5 100 134-236 21-122 (210)
61 2dyk_A GTP-binding protein; GT 99.0 1.7E-09 5.9E-14 83.8 8.4 93 140-237 2-94 (161)
62 2wji_A Ferrous iron transport 99.0 2.1E-09 7.1E-14 84.7 8.9 90 140-234 4-93 (165)
63 2d2e_A SUFC protein; ABC-ATPas 99.0 9.8E-11 3.4E-15 99.8 0.8 114 128-241 18-152 (250)
64 1tq4_A IIGP1, interferon-induc 99.0 8.4E-10 2.9E-14 100.6 7.0 85 137-230 67-154 (413)
65 1jal_A YCHF protein; nucleotid 98.9 3.3E-10 1.1E-14 101.6 4.1 91 139-235 2-109 (363)
66 2ohf_A Protein OLA1, GTP-bindi 98.9 4.2E-10 1.4E-14 102.0 4.7 96 133-234 16-128 (396)
67 2zu0_C Probable ATP-dependent 98.9 2.8E-10 9.5E-15 98.0 3.0 114 128-241 35-173 (267)
68 3b1v_A Ferrous iron uptake tra 98.9 1.8E-09 6.2E-14 93.1 8.1 91 139-235 3-93 (272)
69 2ixe_A Antigen peptide transpo 98.9 1.2E-10 4.1E-15 100.5 0.6 113 128-241 34-165 (271)
70 3def_A T7I23.11 protein; chlor 98.9 3E-09 1E-13 90.8 9.2 95 137-234 34-128 (262)
71 2qu8_A Putative nucleolar GTP- 98.9 4.1E-09 1.4E-13 87.5 9.8 96 138-237 28-123 (228)
72 2pjz_A Hypothetical protein ST 98.9 6.1E-11 2.1E-15 102.0 -1.8 108 128-241 20-137 (263)
73 3sop_A Neuronal-specific septi 98.9 3.2E-10 1.1E-14 97.8 2.1 61 140-200 3-73 (270)
74 3geh_A MNME, tRNA modification 98.9 2.4E-10 8.2E-15 105.7 1.4 96 137-237 222-318 (462)
75 1wxq_A GTP-binding protein; st 98.9 6.1E-10 2.1E-14 101.1 4.0 89 141-235 2-114 (397)
76 3nh6_A ATP-binding cassette SU 98.9 1.4E-10 4.7E-15 101.9 -0.4 108 129-242 70-200 (306)
77 1h65_A Chloroplast outer envel 98.9 4.9E-09 1.7E-13 89.8 9.2 94 138-234 38-131 (270)
78 2wjg_A FEOB, ferrous iron tran 98.9 6.4E-09 2.2E-13 83.0 9.1 91 139-234 7-97 (188)
79 2ff7_A Alpha-hemolysin translo 98.9 1.8E-10 6.3E-15 98.0 -0.1 108 128-241 24-154 (247)
80 1mv5_A LMRA, multidrug resista 98.9 4E-10 1.4E-14 95.6 2.0 109 128-241 17-148 (243)
81 3gd7_A Fusion complex of cysti 98.8 2.8E-10 9.6E-15 103.0 -0.1 107 128-242 36-165 (390)
82 1udx_A The GTP-binding protein 98.8 2.4E-09 8.1E-14 97.7 6.0 95 130-233 148-246 (416)
83 2qag_B Septin-6, protein NEDD5 98.8 1.1E-08 3.6E-13 93.6 8.9 70 129-199 30-107 (427)
84 2cbz_A Multidrug resistance-as 98.8 1.2E-09 4E-14 92.4 1.5 56 128-186 20-75 (237)
85 1lnz_A SPO0B-associated GTP-bi 98.8 4.9E-09 1.7E-13 93.3 5.6 90 139-234 158-248 (342)
86 2pze_A Cystic fibrosis transme 98.8 9.2E-10 3.1E-14 92.6 0.6 56 128-186 23-78 (229)
87 2dby_A GTP-binding protein; GD 98.8 4.7E-09 1.6E-13 94.3 4.9 89 141-235 3-112 (368)
88 1f5n_A Interferon-induced guan 98.7 2.2E-08 7.7E-13 94.9 8.2 64 137-202 36-106 (592)
89 2ghi_A Transport protein; mult 98.7 2.5E-09 8.6E-14 91.6 1.4 107 128-241 35-164 (260)
90 2lkc_A Translation initiation 98.7 2E-08 6.9E-13 79.1 6.5 86 137-235 6-91 (178)
91 2cxx_A Probable GTP-binding pr 98.7 4.7E-08 1.6E-12 77.8 8.7 88 141-234 3-94 (190)
92 3b5x_A Lipid A export ATP-bind 98.7 3.8E-09 1.3E-13 100.2 2.4 110 128-242 358-490 (582)
93 2j69_A Bacterial dynamin-like 98.7 6.6E-08 2.3E-12 93.5 10.9 38 136-173 66-103 (695)
94 1jwy_B Dynamin A GTPase domain 98.7 4.3E-08 1.5E-12 85.1 8.2 27 138-164 23-49 (315)
95 2bbs_A Cystic fibrosis transme 98.7 3.4E-09 1.2E-13 92.3 1.1 57 127-186 52-108 (290)
96 2nzj_A GTP-binding protein REM 98.7 3.2E-08 1.1E-12 77.6 6.6 85 139-235 4-90 (175)
97 1ksh_A ARF-like protein 2; sma 98.7 6.6E-08 2.2E-12 77.0 8.3 84 137-236 16-99 (186)
98 2aka_B Dynamin-1; fusion prote 98.7 1E-07 3.6E-12 81.9 10.0 27 138-164 25-51 (299)
99 2g6b_A RAS-related protein RAB 98.6 3.5E-08 1.2E-12 77.9 6.3 87 137-235 8-96 (180)
100 2qm8_A GTPase/ATPase; G protei 98.6 1.5E-08 5.2E-13 89.9 4.5 35 127-161 43-77 (337)
101 4a82_A Cystic fibrosis transme 98.6 3.2E-09 1.1E-13 100.6 -0.1 107 129-241 357-486 (578)
102 1z0j_A RAB-22, RAS-related pro 98.6 1.7E-08 5.9E-13 78.6 4.1 60 139-198 6-66 (170)
103 2yl4_A ATP-binding cassette SU 98.6 4E-09 1.4E-13 100.2 0.2 109 129-241 360-492 (595)
104 3r7w_A Gtpase1, GTP-binding pr 98.6 7.1E-08 2.4E-12 84.2 8.2 90 139-236 3-94 (307)
105 3b60_A Lipid A export ATP-bind 98.6 3.8E-09 1.3E-13 100.1 -0.1 108 129-241 359-489 (582)
106 3q72_A GTP-binding protein RAD 98.6 3.8E-08 1.3E-12 76.6 5.7 58 140-198 3-60 (166)
107 1fzq_A ADP-ribosylation factor 98.6 1.2E-07 4.2E-12 75.6 8.5 84 137-236 14-97 (181)
108 3tw8_B RAS-related protein RAB 98.6 1.4E-07 4.8E-12 74.1 8.6 60 138-198 8-69 (181)
109 2x2e_A Dynamin-1; nitration, h 98.6 1.2E-07 4.1E-12 84.3 8.9 26 139-164 31-56 (353)
110 3bk7_A ABC transporter ATP-bin 98.6 8.2E-09 2.8E-13 98.4 1.3 99 136-241 379-480 (607)
111 1zd9_A ADP-ribosylation factor 98.6 1.3E-07 4.4E-12 75.8 8.2 84 137-235 20-103 (188)
112 3clv_A RAB5 protein, putative; 98.6 1.3E-07 4.3E-12 75.6 8.2 27 138-164 6-32 (208)
113 4bas_A ADP-ribosylation factor 98.6 1.3E-07 4.3E-12 75.9 8.2 86 137-236 15-100 (199)
114 3t34_A Dynamin-related protein 98.6 1.5E-07 5.3E-12 83.7 9.3 24 141-164 36-59 (360)
115 3qf4_A ABC transporter, ATP-bi 98.6 4.3E-09 1.5E-13 100.0 -1.0 108 129-242 359-489 (587)
116 1upt_A ARL1, ADP-ribosylation 98.6 1.3E-07 4.6E-12 73.7 7.7 83 137-235 5-87 (171)
117 1r8s_A ADP-ribosylation factor 98.6 1.1E-07 3.6E-12 73.9 7.0 80 141-236 2-81 (164)
118 1kao_A RAP2A; GTP-binding prot 98.6 7.7E-08 2.6E-12 74.4 6.1 58 139-198 3-62 (167)
119 3qf4_B Uncharacterized ABC tra 98.6 3.4E-09 1.2E-13 100.9 -2.2 108 129-242 371-501 (598)
120 1u8z_A RAS-related protein RAL 98.6 6.7E-08 2.3E-12 74.9 5.5 83 139-235 4-88 (168)
121 3bc1_A RAS-related protein RAB 98.6 1.6E-07 5.6E-12 74.6 7.8 86 138-236 10-107 (195)
122 3cph_A RAS-related protein SEC 98.6 1.8E-07 6.1E-12 75.9 8.2 86 137-235 18-105 (213)
123 1ek0_A Protein (GTP-binding pr 98.6 8.5E-08 2.9E-12 74.5 5.9 82 140-235 4-88 (170)
124 3j2k_7 ERF3, eukaryotic polype 98.5 1.2E-07 4.1E-12 87.0 7.7 88 137-236 15-132 (439)
125 2erx_A GTP-binding protein DI- 98.5 1.2E-07 4.2E-12 73.7 6.7 83 139-235 3-87 (172)
126 1zj6_A ADP-ribosylation factor 98.5 1.4E-07 4.9E-12 75.2 7.2 83 137-235 14-96 (187)
127 4dsu_A GTPase KRAS, isoform 2B 98.5 6.4E-08 2.2E-12 76.8 5.1 58 139-198 4-63 (189)
128 2fg5_A RAB-22B, RAS-related pr 98.5 8.6E-08 2.9E-12 77.1 5.8 88 137-236 21-109 (192)
129 1r2q_A RAS-related protein RAB 98.5 1.6E-07 5.4E-12 72.9 7.0 85 139-235 6-91 (170)
130 2h17_A ADP-ribosylation factor 98.5 1.6E-07 5.6E-12 74.6 7.2 83 137-235 19-101 (181)
131 2oil_A CATX-8, RAS-related pro 98.5 9.9E-08 3.4E-12 76.5 5.9 87 137-235 23-110 (193)
132 1zbd_A Rabphilin-3A; G protein 98.5 1E-07 3.5E-12 77.0 6.0 83 139-235 8-93 (203)
133 3t5d_A Septin-7; GTP-binding p 98.5 9.1E-08 3.1E-12 82.0 5.9 60 140-199 9-77 (274)
134 3dz8_A RAS-related protein RAB 98.5 8.9E-08 3E-12 76.8 5.4 87 137-235 21-108 (191)
135 2bme_A RAB4A, RAS-related prot 98.5 1.7E-07 5.7E-12 74.4 6.9 87 137-236 8-96 (186)
136 2p5s_A RAS and EF-hand domain 98.5 6.3E-08 2.2E-12 78.3 4.5 86 137-236 26-114 (199)
137 3tkl_A RAS-related protein RAB 98.5 2.7E-07 9.3E-12 73.7 8.2 85 138-235 15-101 (196)
138 1wms_A RAB-9, RAB9, RAS-relate 98.5 1.7E-07 5.7E-12 73.7 6.8 84 139-235 7-92 (177)
139 1moz_A ARL1, ADP-ribosylation 98.5 1.2E-07 4.1E-12 75.0 5.9 83 137-235 16-98 (183)
140 1f6b_A SAR1; gtpases, N-termin 98.5 1.5E-07 5.1E-12 76.4 6.6 87 132-235 19-105 (198)
141 1yqt_A RNAse L inhibitor; ATP- 98.5 9.7E-09 3.3E-13 96.6 -0.6 99 136-241 309-410 (538)
142 1m2o_B GTP-binding protein SAR 98.5 1.9E-07 6.4E-12 75.2 7.1 82 139-236 23-104 (190)
143 1z0f_A RAB14, member RAS oncog 98.5 7.8E-08 2.7E-12 75.5 4.6 85 138-236 14-101 (179)
144 4f4c_A Multidrug resistance pr 98.5 1.3E-08 4.6E-13 104.7 0.1 110 129-242 1095-1227(1321)
145 1c1y_A RAS-related protein RAP 98.5 1.3E-07 4.4E-12 73.4 5.8 57 140-198 4-62 (167)
146 1z2a_A RAS-related protein RAB 98.5 3.1E-07 1.1E-11 71.3 7.9 84 139-235 5-90 (168)
147 2b6h_A ADP-ribosylation factor 98.5 2E-07 6.7E-12 75.2 6.8 83 137-235 27-109 (192)
148 1g16_A RAS-related protein SEC 98.5 2E-07 6.9E-12 72.5 6.6 83 140-235 4-88 (170)
149 2www_A Methylmalonic aciduria 98.5 3.7E-08 1.3E-12 87.8 2.4 25 137-161 72-96 (349)
150 1ky3_A GTP-binding protein YPT 98.5 1.5E-07 5.2E-12 74.0 5.6 85 138-235 7-94 (182)
151 1x3s_A RAS-related protein RAB 98.5 2E-07 6.7E-12 74.4 6.3 85 137-235 13-100 (195)
152 2atv_A RERG, RAS-like estrogen 98.5 1.7E-07 5.9E-12 75.4 5.9 84 137-235 26-111 (196)
153 2h57_A ADP-ribosylation factor 98.5 2.2E-07 7.4E-12 74.4 6.4 60 137-198 19-78 (190)
154 3qq5_A Small GTP-binding prote 98.5 8.7E-08 3E-12 87.5 4.5 90 138-232 33-123 (423)
155 1z06_A RAS-related protein RAB 98.5 4.2E-07 1.4E-11 72.6 8.0 86 138-235 19-106 (189)
156 2y8e_A RAB-protein 6, GH09086P 98.5 2.7E-07 9.3E-12 72.3 6.8 84 139-235 14-99 (179)
157 3q85_A GTP-binding protein REM 98.5 2.6E-07 8.9E-12 72.0 6.5 58 140-198 3-62 (169)
158 2x77_A ADP-ribosylation factor 98.5 3.8E-07 1.3E-11 72.8 7.6 83 137-235 20-102 (189)
159 2il1_A RAB12; G-protein, GDP, 98.5 2.9E-07 9.9E-12 74.0 6.9 85 139-236 26-112 (192)
160 3izq_1 HBS1P, elongation facto 98.5 8.7E-08 3E-12 91.4 4.4 87 137-235 165-281 (611)
161 3con_A GTPase NRAS; structural 98.5 2.2E-07 7.4E-12 74.2 6.1 58 139-198 21-80 (190)
162 2qpt_A EH domain-containing pr 98.5 3.1E-07 1E-11 86.6 8.0 39 137-175 63-103 (550)
163 3p26_A Elongation factor 1 alp 98.5 1.5E-07 5E-12 87.3 5.7 87 137-235 31-147 (483)
164 2f7s_A C25KG, RAS-related prot 98.5 3.8E-07 1.3E-11 74.5 7.6 87 137-236 23-121 (217)
165 2gf0_A GTP-binding protein DI- 98.4 2.5E-07 8.7E-12 74.1 6.3 84 138-235 7-92 (199)
166 1z08_A RAS-related protein RAB 98.4 2.2E-07 7.6E-12 72.3 5.8 59 139-198 6-66 (170)
167 2hxs_A RAB-26, RAS-related pro 98.4 2.5E-07 8.6E-12 72.7 6.2 86 138-236 5-93 (178)
168 2efe_B Small GTP-binding prote 98.4 2.1E-07 7.1E-12 73.4 5.6 84 139-235 12-97 (181)
169 1vg8_A RAS-related protein RAB 98.4 6.2E-07 2.1E-11 72.4 8.5 85 138-235 7-93 (207)
170 2bcg_Y Protein YP2, GTP-bindin 98.4 3.3E-07 1.1E-11 74.3 6.7 59 139-198 8-68 (206)
171 3ozx_A RNAse L inhibitor; ATP 98.4 3E-08 1E-12 93.2 0.5 103 134-241 289-394 (538)
172 2ce2_X GTPase HRAS; signaling 98.4 2.2E-07 7.7E-12 71.6 5.3 57 140-198 4-62 (166)
173 2gf9_A RAS-related protein RAB 98.4 2.4E-07 8.1E-12 74.1 5.7 58 139-198 22-82 (189)
174 2a9k_A RAS-related protein RAL 98.4 3.2E-07 1.1E-11 72.4 6.4 59 138-198 17-77 (187)
175 3oes_A GTPase rhebl1; small GT 98.4 2.1E-07 7.3E-12 75.3 5.3 60 137-198 22-83 (201)
176 2bov_A RAla, RAS-related prote 98.4 6E-07 2.1E-11 72.3 8.0 59 138-198 13-73 (206)
177 2o52_A RAS-related protein RAB 98.4 2.6E-07 8.8E-12 74.9 5.7 86 137-235 23-110 (200)
178 3j16_B RLI1P; ribosome recycli 98.4 5.7E-08 1.9E-12 92.6 1.8 105 130-241 364-476 (608)
179 2ew1_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 74.2 6.8 86 138-236 25-112 (201)
180 2yc2_C IFT27, small RAB-relate 98.4 1.6E-07 5.4E-12 75.8 4.1 87 138-236 19-110 (208)
181 3gj0_A GTP-binding nuclear pro 98.4 1.4E-07 4.9E-12 77.5 3.8 87 137-235 13-100 (221)
182 2fn4_A P23, RAS-related protei 98.4 4.5E-07 1.6E-11 71.2 6.6 59 138-198 8-68 (181)
183 2j1l_A RHO-related GTP-binding 98.4 2.7E-07 9.4E-12 75.6 5.4 84 138-235 33-118 (214)
184 2iwr_A Centaurin gamma 1; ANK 98.4 2.3E-07 7.7E-12 73.2 4.8 58 138-198 6-65 (178)
185 1wb1_A Translation elongation 98.4 3.3E-07 1.1E-11 85.0 6.6 88 139-238 19-112 (482)
186 3g5u_A MCG1178, multidrug resi 98.4 5.5E-08 1.9E-12 99.9 1.3 111 128-242 1048-1181(1284)
187 3kkq_A RAS-related protein M-R 98.4 3.6E-07 1.2E-11 72.3 5.7 60 137-198 16-77 (183)
188 1mh1_A RAC1; GTP-binding, GTPa 98.4 3.4E-07 1.2E-11 72.3 5.4 83 139-235 5-89 (186)
189 1d2e_A Elongation factor TU (E 98.4 5.6E-07 1.9E-11 81.3 7.4 88 139-238 3-105 (397)
190 4djt_A GTP-binding nuclear pro 98.4 4.6E-07 1.6E-11 74.0 6.2 86 138-236 10-98 (218)
191 2ged_A SR-beta, signal recogni 98.4 5E-07 1.7E-11 72.2 6.2 82 137-233 46-129 (193)
192 2q3h_A RAS homolog gene family 98.4 7.9E-07 2.7E-11 71.6 7.3 60 137-198 18-79 (201)
193 2fh5_B SR-beta, signal recogni 98.4 1.2E-06 4.1E-11 71.3 8.3 81 139-234 7-90 (214)
194 2fu5_C RAS-related protein RAB 98.4 1.4E-07 4.9E-12 74.7 2.6 59 139-198 8-68 (183)
195 1m7b_A RND3/RHOE small GTP-bin 98.4 5.4E-07 1.8E-11 71.8 6.0 83 139-235 7-91 (184)
196 2p67_A LAO/AO transport system 98.3 9.1E-07 3.1E-11 78.3 8.0 34 128-161 45-78 (341)
197 2a5j_A RAS-related protein RAB 98.3 9.5E-07 3.3E-11 70.7 7.4 85 138-235 20-106 (191)
198 3g5u_A MCG1178, multidrug resi 98.3 4.5E-08 1.5E-12 100.5 -0.9 58 129-186 406-473 (1284)
199 2fv8_A H6, RHO-related GTP-bin 98.3 3.4E-07 1.2E-11 74.5 4.5 60 137-198 23-84 (207)
200 2hup_A RAS-related protein RAB 98.3 8.8E-07 3E-11 71.8 6.8 87 137-236 27-115 (201)
201 3o47_A ADP-ribosylation factor 98.3 6.4E-07 2.2E-11 78.9 6.4 81 139-235 165-245 (329)
202 3t5g_A GTP-binding protein RHE 98.3 9.1E-07 3.1E-11 69.8 6.6 58 139-198 6-65 (181)
203 4gzl_A RAS-related C3 botulinu 98.3 8.8E-07 3E-11 72.0 6.7 86 137-236 28-115 (204)
204 1yqt_A RNAse L inhibitor; ATP- 98.3 2.9E-07 1E-11 86.5 4.1 103 129-241 38-167 (538)
205 2zej_A Dardarin, leucine-rich 98.3 6.9E-07 2.3E-11 71.3 5.7 24 140-163 3-26 (184)
206 1nrj_B SR-beta, signal recogni 98.3 1.3E-06 4.3E-11 71.4 7.4 81 137-233 10-93 (218)
207 3tr5_A RF-3, peptide chain rel 98.3 2.5E-07 8.5E-12 86.8 3.6 89 138-238 12-121 (528)
208 3zvr_A Dynamin-1; hydrolase, D 98.3 2.1E-06 7E-11 83.6 9.9 27 138-164 50-76 (772)
209 4f4c_A Multidrug resistance pr 98.3 7.9E-08 2.7E-12 98.9 0.0 108 129-242 434-564 (1321)
210 2c78_A Elongation factor TU-A; 98.3 5.3E-07 1.8E-11 81.6 5.5 88 138-237 10-113 (405)
211 3reg_A RHO-like small GTPase; 98.3 5.4E-07 1.8E-11 72.3 4.9 59 138-198 22-82 (194)
212 3llu_A RAS-related GTP-binding 98.3 2.2E-06 7.4E-11 69.1 8.5 89 138-235 19-108 (196)
213 2iw3_A Elongation factor 3A; a 98.3 1.1E-07 3.6E-12 94.8 0.5 103 128-241 450-557 (986)
214 3lvq_E ARF-GAP with SH3 domain 98.3 1.1E-06 3.7E-11 81.3 7.3 82 138-235 321-402 (497)
215 3c5c_A RAS-like protein 12; GD 98.3 4.6E-07 1.6E-11 72.6 4.1 83 138-235 20-104 (187)
216 3aez_A Pantothenate kinase; tr 98.3 1.5E-07 5.1E-12 82.7 1.3 97 136-241 87-185 (312)
217 1htw_A HI0065; nucleotide-bind 98.3 5.8E-07 2E-11 71.2 4.6 43 128-171 22-64 (158)
218 3ihw_A Centg3; RAS, centaurin, 98.3 6.8E-07 2.3E-11 71.6 4.9 58 138-198 19-78 (184)
219 2elf_A Protein translation elo 98.3 8.5E-07 2.9E-11 79.6 6.0 75 141-237 23-97 (370)
220 3cbq_A GTP-binding protein REM 98.3 1.4E-06 4.7E-11 70.5 6.7 86 138-235 22-109 (195)
221 1gwn_A RHO-related GTP-binding 98.3 9.9E-07 3.4E-11 72.1 5.9 84 138-235 27-112 (205)
222 2gco_A H9, RHO-related GTP-bin 98.3 1.1E-06 3.9E-11 71.0 6.2 58 139-198 25-84 (201)
223 3cpj_B GTP-binding protein YPT 98.3 1.6E-06 5.4E-11 71.4 7.0 60 138-198 12-73 (223)
224 1zun_B Sulfate adenylate trans 98.3 1E-06 3.5E-11 80.4 6.5 88 138-237 23-142 (434)
225 1kk1_A EIF2gamma; initiation o 98.3 2E-06 6.8E-11 77.9 8.1 87 138-236 9-120 (410)
226 3ozx_A RNAse L inhibitor; ATP 98.2 9.7E-08 3.3E-12 89.8 -0.9 106 135-241 21-147 (538)
227 1z6g_A Guanylate kinase; struc 98.2 3.2E-07 1.1E-11 76.1 2.3 36 128-163 12-47 (218)
228 1f60_A Elongation factor EEF1A 98.2 3.3E-07 1.1E-11 84.4 2.5 86 139-236 7-122 (458)
229 3l0i_B RAS-related protein RAB 98.2 5E-07 1.7E-11 72.9 3.1 61 137-198 31-93 (199)
230 3bk7_A ABC transporter ATP-bin 98.2 2.6E-07 8.9E-12 88.0 1.5 104 128-241 107-237 (607)
231 3q3j_B RHO-related GTP-binding 98.2 2.3E-06 7.8E-11 70.2 6.9 84 138-235 26-111 (214)
232 1oix_A RAS-related protein RAB 98.2 2E-06 6.9E-11 69.2 6.4 59 139-198 29-89 (191)
233 2j0v_A RAC-like GTP-binding pr 98.2 2E-06 6.8E-11 69.9 6.4 84 138-235 8-93 (212)
234 3bwd_D RAC-like GTP-binding pr 98.2 6.7E-07 2.3E-11 70.5 3.1 26 138-163 7-32 (182)
235 2wkq_A NPH1-1, RAS-related C3 98.2 5E-06 1.7E-10 72.0 8.9 88 135-236 151-240 (332)
236 3t1o_A Gliding protein MGLA; G 98.2 6E-07 2.1E-11 71.5 2.7 27 138-164 13-39 (198)
237 2atx_A Small GTP binding prote 98.2 1.2E-06 4E-11 70.2 4.4 58 139-198 18-77 (194)
238 2f9l_A RAB11B, member RAS onco 98.2 2.5E-06 8.4E-11 68.9 6.3 59 139-198 5-65 (199)
239 2h5e_A Peptide chain release f 98.2 1.4E-06 4.8E-11 81.7 5.5 89 137-237 11-120 (529)
240 1jny_A EF-1-alpha, elongation 98.2 1.1E-06 3.8E-11 80.3 4.7 86 138-235 5-120 (435)
241 3th5_A RAS-related C3 botulinu 97.5 2.2E-07 7.6E-12 75.2 0.0 85 138-236 29-115 (204)
242 1s0u_A EIF-2-gamma, translatio 98.2 4.7E-06 1.6E-10 75.4 8.5 87 138-236 7-118 (408)
243 2qag_C Septin-7; cell cycle, c 98.1 1.7E-06 5.7E-11 78.9 5.2 60 141-200 33-101 (418)
244 3mca_A HBS1, elongation factor 98.1 2E-07 6.9E-12 88.6 -1.1 86 138-235 176-291 (592)
245 3sjy_A Translation initiation 98.1 1.1E-06 3.8E-11 79.5 3.8 88 137-236 6-112 (403)
246 2dy1_A Elongation factor G; tr 98.1 3.5E-06 1.2E-10 81.1 7.4 92 135-238 5-113 (665)
247 2g3y_A GTP-binding protein GEM 98.1 8.2E-06 2.8E-10 67.3 8.4 59 139-197 37-97 (211)
248 2qag_A Septin-2, protein NEDD5 98.1 6.9E-06 2.3E-10 73.3 8.3 60 140-199 38-107 (361)
249 3j16_B RLI1P; ribosome recycli 98.1 2.3E-07 7.9E-12 88.4 -1.5 107 135-241 99-230 (608)
250 3izy_P Translation initiation 98.1 4.2E-07 1.4E-11 85.4 0.3 89 137-238 2-91 (537)
251 2xex_A Elongation factor G; GT 98.1 2.7E-06 9.2E-11 82.2 5.3 89 138-238 9-114 (693)
252 2qnr_A Septin-2, protein NEDD5 98.1 2.3E-06 7.9E-11 74.5 4.3 59 140-199 19-88 (301)
253 1zo1_I IF2, translation initia 98.1 9.8E-07 3.3E-11 82.2 1.9 88 138-238 3-90 (501)
254 2v9p_A Replication protein E1; 98.1 2E-06 6.7E-11 75.3 3.7 37 127-163 114-150 (305)
255 1r5b_A Eukaryotic peptide chai 98.1 1.9E-06 6.3E-11 79.6 3.7 88 137-236 41-158 (467)
256 4gp7_A Metallophosphoesterase; 98.0 1.8E-06 6.1E-11 68.7 2.7 29 132-160 2-30 (171)
257 1znw_A Guanylate kinase, GMP k 98.0 2.2E-06 7.6E-11 70.1 2.9 30 134-163 15-44 (207)
258 3lnc_A Guanylate kinase, GMP k 98.0 2.3E-06 7.7E-11 71.1 2.8 36 128-163 16-52 (231)
259 3p32_A Probable GTPase RV1496/ 98.0 5.6E-06 1.9E-10 73.6 5.4 27 135-161 75-101 (355)
260 1dar_A EF-G, elongation factor 98.0 9.1E-06 3.1E-10 78.5 6.8 89 138-238 11-116 (691)
261 3szr_A Interferon-induced GTP- 98.0 6.2E-06 2.1E-10 78.5 5.5 24 142-165 48-71 (608)
262 1s96_A Guanylate kinase, GMP k 98.0 2.9E-06 9.9E-11 70.6 2.8 31 134-164 11-41 (219)
263 2cjw_A GTP-binding protein GEM 98.0 7.9E-06 2.7E-10 65.8 5.3 60 139-198 6-67 (192)
264 3ux8_A Excinuclease ABC, A sub 98.0 4.3E-07 1.5E-11 87.3 -2.7 29 128-156 33-61 (670)
265 2jeo_A Uridine-cytidine kinase 98.0 3.2E-06 1.1E-10 71.0 2.9 35 128-162 14-48 (245)
266 3tr0_A Guanylate kinase, GMP k 97.9 3.5E-06 1.2E-10 68.1 2.9 29 135-163 3-31 (205)
267 3q5d_A Atlastin-1; G protein, 97.9 4.9E-06 1.7E-10 76.4 4.1 62 138-200 66-153 (447)
268 3avx_A Elongation factor TS, e 97.9 1.2E-05 4.2E-10 81.2 7.1 89 137-237 294-397 (1289)
269 2og2_A Putative signal recogni 97.9 3.8E-06 1.3E-10 75.1 3.2 34 131-164 149-182 (359)
270 1rj9_A FTSY, signal recognitio 97.9 4.5E-06 1.5E-10 72.9 3.5 27 138-164 101-127 (304)
271 3b85_A Phosphate starvation-in 97.9 2.5E-06 8.6E-11 70.5 1.6 33 137-170 20-52 (208)
272 1g7s_A Translation initiation 97.9 6.6E-06 2.3E-10 78.2 4.0 89 138-239 4-110 (594)
273 1kgd_A CASK, peripheral plasma 97.8 6.9E-06 2.4E-10 65.7 2.9 26 138-163 4-29 (180)
274 2rdo_7 EF-G, elongation factor 97.8 2.6E-05 9.1E-10 75.4 7.5 89 138-238 9-121 (704)
275 3cb4_D GTP-binding protein LEP 97.8 1.4E-05 4.8E-10 75.9 5.2 88 140-239 5-111 (599)
276 2j37_W Signal recognition part 97.8 4E-05 1.4E-09 71.4 8.0 94 137-236 99-227 (504)
277 1lvg_A Guanylate kinase, GMP k 97.8 5.7E-06 1.9E-10 67.4 2.0 26 138-163 3-28 (198)
278 2ywe_A GTP-binding protein LEP 97.8 1.4E-05 4.9E-10 75.9 5.1 89 139-239 6-113 (600)
279 1n0u_A EF-2, elongation factor 97.8 1.2E-05 4.3E-10 79.2 4.8 88 139-238 19-137 (842)
280 2eyu_A Twitching motility prot 97.8 1.2E-05 4E-10 68.7 3.7 35 129-165 17-51 (261)
281 3vqt_A RF-3, peptide chain rel 97.8 2.5E-05 8.5E-10 73.5 6.0 92 136-239 28-140 (548)
282 2gza_A Type IV secretion syste 97.8 8.7E-06 3E-10 72.6 2.7 38 128-165 164-201 (361)
283 1zp6_A Hypothetical protein AT 97.8 1.4E-05 4.9E-10 63.8 3.4 27 136-162 6-32 (191)
284 3dpu_A RAB family protein; roc 97.8 9.4E-06 3.2E-10 75.9 2.7 28 137-164 39-66 (535)
285 2pt7_A CAG-ALFA; ATPase, prote 97.7 7.9E-06 2.7E-10 72.1 2.0 39 128-166 160-198 (330)
286 2iw3_A Elongation factor 3A; a 97.7 6.4E-06 2.2E-10 82.1 1.5 41 128-168 688-728 (986)
287 2obl_A ESCN; ATPase, hydrolase 97.7 1.2E-05 4.3E-10 71.4 2.8 38 128-166 61-98 (347)
288 4dkx_A RAS-related protein RAB 97.7 6.3E-05 2.1E-09 62.2 7.0 57 140-198 14-73 (216)
289 2npi_A Protein CLP1; CLP1-PCF1 97.7 1.4E-05 4.9E-10 73.6 3.1 38 131-168 130-167 (460)
290 3c8u_A Fructokinase; YP_612366 97.7 1.5E-05 5.2E-10 65.1 2.8 29 136-164 19-47 (208)
291 3euj_A Chromosome partition pr 97.7 9.4E-06 3.2E-10 75.2 1.6 37 129-166 20-56 (483)
292 3ney_A 55 kDa erythrocyte memb 97.7 1.8E-05 6.1E-10 64.9 2.9 27 137-163 17-43 (197)
293 3tau_A Guanylate kinase, GMP k 97.7 2.5E-05 8.5E-10 63.9 3.5 28 137-164 6-33 (208)
294 2dpy_A FLII, flagellum-specifi 97.6 1.9E-05 6.5E-10 72.3 3.0 39 128-167 147-185 (438)
295 3a00_A Guanylate kinase, GMP k 97.6 1.6E-05 5.6E-10 63.8 2.1 25 140-164 2-26 (186)
296 1ye8_A Protein THEP1, hypothet 97.6 2.1E-05 7.1E-10 63.2 2.6 23 141-163 2-24 (178)
297 4a74_A DNA repair and recombin 97.6 2.9E-05 9.9E-10 63.6 3.2 29 134-162 20-48 (231)
298 2j41_A Guanylate kinase; GMP, 97.6 2.9E-05 1E-09 62.6 3.1 28 136-163 3-30 (207)
299 3b9q_A Chloroplast SRP recepto 97.6 2.1E-05 7.2E-10 68.6 2.3 34 131-164 92-125 (302)
300 3asz_A Uridine kinase; cytidin 97.6 2.5E-05 8.6E-10 63.5 2.6 27 137-163 4-30 (211)
301 2ehv_A Hypothetical protein PH 97.5 4.2E-05 1.4E-09 63.4 3.4 27 134-160 25-51 (251)
302 1cr0_A DNA primase/helicase; R 97.5 3.8E-05 1.3E-09 66.0 3.2 35 128-162 24-58 (296)
303 2yhs_A FTSY, cell division pro 97.5 5.7E-05 2E-09 70.1 4.3 33 131-163 285-317 (503)
304 1lw7_A Transcriptional regulat 97.5 3.5E-05 1.2E-09 68.5 2.8 38 130-167 159-198 (365)
305 3vaa_A Shikimate kinase, SK; s 97.5 5.1E-05 1.7E-09 61.4 3.3 34 128-161 14-47 (199)
306 1sq5_A Pantothenate kinase; P- 97.5 4.5E-05 1.5E-09 66.4 3.0 26 137-162 78-103 (308)
307 2oap_1 GSPE-2, type II secreti 97.5 4.1E-05 1.4E-09 71.4 2.7 40 126-165 247-286 (511)
308 3ux8_A Excinuclease ABC, A sub 97.5 2.8E-05 9.7E-10 74.7 1.5 33 128-160 337-369 (670)
309 2i3b_A HCR-ntpase, human cance 97.4 4.4E-05 1.5E-09 62.0 2.2 25 139-163 1-25 (189)
310 2bbw_A Adenylate kinase 4, AK4 97.4 7.9E-05 2.7E-09 62.3 3.6 30 138-167 26-58 (246)
311 3r7w_B Gtpase2, GTP-binding pr 97.4 8.4E-05 2.9E-09 65.6 3.9 84 142-235 2-85 (331)
312 3uie_A Adenylyl-sulfate kinase 97.4 7.7E-05 2.6E-09 60.4 3.4 31 133-163 19-49 (200)
313 3ec2_A DNA replication protein 97.4 0.00014 4.6E-09 57.7 4.8 31 133-163 32-62 (180)
314 4eun_A Thermoresistant glucoki 97.4 6.6E-05 2.2E-09 60.8 2.9 26 137-162 27-52 (200)
315 2w0m_A SSO2452; RECA, SSPF, un 97.4 9.4E-05 3.2E-09 60.3 3.7 33 129-161 12-45 (235)
316 2bdt_A BH3686; alpha-beta prot 97.3 7.3E-05 2.5E-09 59.7 2.4 23 139-161 2-24 (189)
317 3nwj_A ATSK2; P loop, shikimat 97.3 7.4E-05 2.5E-09 63.4 2.0 36 126-161 32-70 (250)
318 3j25_A Tetracycline resistance 97.3 5.9E-05 2E-09 72.2 1.5 87 141-239 4-107 (638)
319 4e22_A Cytidylate kinase; P-lo 97.3 0.00013 4.4E-09 61.5 3.5 30 137-166 25-57 (252)
320 2x8a_A Nuclear valosin-contain 97.3 0.0002 7E-09 61.2 4.7 35 127-163 34-68 (274)
321 2vp4_A Deoxynucleoside kinase; 97.3 0.00014 4.7E-09 60.4 3.1 29 134-162 15-43 (230)
322 1svm_A Large T antigen; AAA+ f 97.2 0.00016 5.3E-09 65.0 3.7 36 127-162 157-192 (377)
323 1tf7_A KAIC; homohexamer, hexa 97.2 0.00012 4.1E-09 68.3 3.0 37 127-163 26-65 (525)
324 3kta_A Chromosome segregation 97.2 0.0001 3.6E-09 58.4 2.1 30 132-162 20-49 (182)
325 3dm5_A SRP54, signal recogniti 97.2 0.0011 3.7E-08 60.7 9.1 23 138-160 99-121 (443)
326 2ewv_A Twitching motility prot 97.2 0.00015 5.2E-09 64.8 3.4 29 136-164 133-161 (372)
327 3e70_C DPA, signal recognition 97.2 0.00014 4.7E-09 64.1 2.9 29 136-164 126-154 (328)
328 1knq_A Gluconate kinase; ALFA/ 97.2 0.00015 5.2E-09 57.0 2.9 25 137-161 6-30 (175)
329 4aby_A DNA repair protein RECN 97.2 4E-05 1.4E-09 68.9 -1.0 33 129-162 51-83 (415)
330 1kag_A SKI, shikimate kinase I 97.2 0.00014 4.7E-09 57.0 2.2 24 139-162 4-27 (173)
331 3jvv_A Twitching mobility prot 97.2 0.00017 5.8E-09 64.3 2.9 29 135-163 119-147 (356)
332 4fn5_A EF-G 1, elongation fact 97.2 0.00053 1.8E-08 66.3 6.5 90 138-239 12-125 (709)
333 2qt1_A Nicotinamide riboside k 97.1 0.00027 9.1E-09 57.3 3.4 30 133-162 15-44 (207)
334 1ixz_A ATP-dependent metallopr 97.1 0.00024 8E-09 59.5 3.0 34 127-162 39-72 (254)
335 2cvh_A DNA repair and recombin 97.1 0.00035 1.2E-08 56.6 3.8 33 129-161 9-42 (220)
336 2qor_A Guanylate kinase; phosp 97.1 0.00027 9.2E-09 57.3 2.9 28 135-162 8-35 (204)
337 2kjq_A DNAA-related protein; s 97.0 0.00025 8.4E-09 55.2 2.4 26 138-163 35-60 (149)
338 3tqc_A Pantothenate kinase; bi 97.0 0.00034 1.2E-08 61.4 3.4 24 139-162 92-115 (321)
339 1p9r_A General secretion pathw 97.0 0.00036 1.2E-08 63.4 3.7 28 137-164 165-192 (418)
340 2v3c_C SRP54, signal recogniti 97.0 0.00034 1.2E-08 63.9 3.3 23 139-161 99-121 (432)
341 1rz3_A Hypothetical protein rb 97.0 0.00031 1.1E-08 56.9 2.7 26 136-161 19-44 (201)
342 1iy2_A ATP-dependent metallopr 97.0 0.00034 1.2E-08 59.4 3.0 33 128-162 64-96 (278)
343 2wsm_A Hydrogenase expression/ 96.9 0.0004 1.4E-08 56.4 3.0 25 138-162 29-53 (221)
344 2f1r_A Molybdopterin-guanine d 96.9 0.00019 6.6E-09 57.2 1.0 26 140-165 3-28 (171)
345 3kl4_A SRP54, signal recogniti 96.9 0.00078 2.7E-08 61.5 5.1 23 138-160 96-118 (433)
346 1n0w_A DNA repair protein RAD5 96.9 0.00054 1.9E-08 56.3 3.5 28 134-161 19-46 (243)
347 1cke_A CK, MSSA, protein (cyti 96.9 0.00045 1.5E-08 56.5 2.8 24 139-162 5-28 (227)
348 1in4_A RUVB, holliday junction 96.8 0.00034 1.2E-08 61.3 1.6 24 140-163 52-75 (334)
349 1jjv_A Dephospho-COA kinase; P 96.8 0.00065 2.2E-08 54.8 3.2 23 140-162 3-25 (206)
350 1nij_A Hypothetical protein YJ 96.8 0.00048 1.6E-08 60.1 2.5 25 139-163 4-28 (318)
351 1y63_A LMAJ004144AAA protein; 96.8 0.00079 2.7E-08 53.6 3.5 31 132-162 3-33 (184)
352 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.00045 1.5E-08 61.5 2.0 27 133-160 18-44 (365)
353 1odf_A YGR205W, hypothetical 3 96.7 0.0015 5.3E-08 56.3 5.1 28 136-163 28-55 (290)
354 2pez_A Bifunctional 3'-phospho 96.7 0.00075 2.6E-08 53.3 2.8 25 138-162 4-28 (179)
355 1wb9_A DNA mismatch repair pro 96.7 0.00049 1.7E-08 67.5 2.0 26 137-162 605-630 (800)
356 2ygr_A Uvrabc system protein A 96.7 0.00043 1.5E-08 69.0 1.6 33 128-160 657-689 (993)
357 2hf9_A Probable hydrogenase ni 96.7 0.00069 2.4E-08 55.2 2.4 25 138-162 37-61 (226)
358 2if2_A Dephospho-COA kinase; a 96.7 0.00069 2.4E-08 54.5 2.3 21 141-161 3-23 (204)
359 1pzn_A RAD51, DNA repair and r 96.6 0.00096 3.3E-08 59.1 3.2 35 129-163 120-155 (349)
360 2o5v_A DNA replication and rep 96.6 0.00058 2E-08 60.9 1.7 30 131-161 19-48 (359)
361 1ex7_A Guanylate kinase; subst 96.6 0.00099 3.4E-08 53.9 2.8 20 142-161 4-23 (186)
362 2vf7_A UVRA2, excinuclease ABC 96.6 0.00029 9.9E-09 69.3 -0.4 34 128-161 512-546 (842)
363 3thx_B DNA mismatch repair pro 96.6 0.00052 1.8E-08 68.2 1.3 31 131-161 665-695 (918)
364 3cm0_A Adenylate kinase; ATP-b 96.6 0.0011 3.8E-08 52.3 3.0 23 138-160 3-25 (186)
365 4eaq_A DTMP kinase, thymidylat 96.6 0.0013 4.3E-08 54.7 3.4 26 137-162 24-49 (229)
366 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4E-08 51.3 3.0 21 141-161 3-23 (173)
367 1nlf_A Regulatory protein REPA 96.6 0.00091 3.1E-08 56.8 2.6 28 134-161 25-52 (279)
368 2r6f_A Excinuclease ABC subuni 96.6 0.00043 1.5E-08 68.8 0.5 33 128-160 639-671 (972)
369 1np6_A Molybdopterin-guanine d 96.6 0.001 3.5E-08 53.2 2.6 24 139-162 6-29 (174)
370 3t61_A Gluconokinase; PSI-biol 96.5 0.00096 3.3E-08 53.7 2.4 23 139-161 18-40 (202)
371 1qhl_A Protein (cell division 96.5 0.00019 6.7E-09 59.9 -1.9 26 141-166 29-54 (227)
372 3thx_A DNA mismatch repair pro 96.5 0.001 3.6E-08 66.2 2.9 28 132-159 655-682 (934)
373 3lw7_A Adenylate kinase relate 96.5 0.0013 4.5E-08 50.7 3.0 19 141-159 3-21 (179)
374 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.3E-08 51.4 3.2 23 139-161 3-25 (192)
375 2yvu_A Probable adenylyl-sulfa 96.5 0.0017 5.7E-08 51.5 3.4 28 135-162 9-36 (186)
376 2rhm_A Putative kinase; P-loop 96.4 0.0016 5.5E-08 51.5 3.2 24 138-161 4-27 (193)
377 2dr3_A UPF0273 protein PH0284; 96.4 0.0017 5.8E-08 53.3 3.4 28 133-160 17-44 (247)
378 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0018 6E-08 50.2 3.3 20 141-160 25-44 (149)
379 1qhx_A CPT, protein (chloramph 96.4 0.0017 5.7E-08 50.9 3.2 23 139-161 3-25 (178)
380 1zu4_A FTSY; GTPase, signal re 96.4 0.0012 4E-08 57.9 2.5 32 130-161 96-127 (320)
381 3cr8_A Sulfate adenylyltranfer 96.4 0.001 3.4E-08 62.6 2.1 30 135-164 365-394 (552)
382 1vma_A Cell division protein F 96.4 0.0019 6.5E-08 56.2 3.7 29 134-162 99-127 (306)
383 1ewq_A DNA mismatch repair pro 96.4 0.0009 3.1E-08 65.3 1.7 25 139-163 576-600 (765)
384 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 50.5 3.1 22 140-161 3-24 (181)
385 2px0_A Flagellar biosynthesis 96.4 0.0015 5.1E-08 56.5 2.8 26 137-162 103-128 (296)
386 1m7g_A Adenylylsulfate kinase; 96.4 0.0018 6E-08 52.7 3.0 29 134-162 20-48 (211)
387 2v54_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 51.3 3.4 25 138-162 3-27 (204)
388 1e69_A Chromosome segregation 96.3 0.0014 4.9E-08 57.1 2.3 28 133-161 19-46 (322)
389 1gvn_B Zeta; postsegregational 96.3 0.0046 1.6E-07 53.1 5.3 25 137-161 31-55 (287)
390 2jaq_A Deoxyguanosine kinase; 96.3 0.0022 7.4E-08 51.1 3.0 21 141-161 2-22 (205)
391 2plr_A DTMP kinase, probable t 96.3 0.0024 8.2E-08 51.2 3.3 23 139-161 4-26 (213)
392 3pih_A Uvrabc system protein A 96.3 0.0014 4.7E-08 65.1 2.1 30 128-157 599-628 (916)
393 2wwf_A Thymidilate kinase, put 96.2 0.0024 8.4E-08 51.3 3.2 25 137-161 8-32 (212)
394 3iij_A Coilin-interacting nucl 96.2 0.0022 7.6E-08 50.4 2.9 24 137-160 9-32 (180)
395 1w1w_A Structural maintenance 96.2 0.002 6.9E-08 58.3 3.0 28 136-163 23-50 (430)
396 1ko7_A HPR kinase/phosphatase; 96.2 0.0031 1.1E-07 55.1 4.0 88 55-162 79-167 (314)
397 2p5t_B PEZT; postsegregational 96.2 0.0039 1.3E-07 52.3 4.5 27 135-161 28-54 (253)
398 1nn5_A Similar to deoxythymidy 96.2 0.0025 8.5E-08 51.3 3.2 25 137-161 7-31 (215)
399 2c95_A Adenylate kinase 1; tra 96.2 0.0026 9.1E-08 50.4 3.2 25 137-161 7-31 (196)
400 1nks_A Adenylate kinase; therm 96.2 0.0024 8.3E-08 50.3 2.8 21 141-161 3-23 (194)
401 3trf_A Shikimate kinase, SK; a 96.1 0.003 1E-07 49.8 3.2 23 139-161 5-27 (185)
402 2bwj_A Adenylate kinase 5; pho 96.1 0.0022 7.7E-08 50.9 2.2 24 138-161 11-34 (199)
403 2o8b_B DNA mismatch repair pro 96.1 0.0018 6.2E-08 65.1 1.9 23 139-162 789-811 (1022)
404 1tf7_A KAIC; homohexamer, hexa 96.1 0.0025 8.4E-08 59.4 2.7 31 133-163 275-305 (525)
405 1gtv_A TMK, thymidylate kinase 96.1 0.0015 5.2E-08 52.7 1.0 22 141-162 2-23 (214)
406 1vht_A Dephospho-COA kinase; s 96.1 0.0036 1.2E-07 50.9 3.4 23 139-161 4-26 (218)
407 1aky_A Adenylate kinase; ATP:A 96.0 0.0036 1.2E-07 51.0 3.3 24 138-161 3-26 (220)
408 1tev_A UMP-CMP kinase; ploop, 96.0 0.0035 1.2E-07 49.4 3.1 22 139-160 3-24 (196)
409 3c5h_A Glucocorticoid receptor 96.0 0.0037 1.3E-07 52.4 3.3 26 137-162 17-51 (255)
410 2xxa_A Signal recognition part 96.0 0.017 5.8E-07 52.6 7.9 24 137-160 98-121 (433)
411 1sxj_C Activator 1 40 kDa subu 95.9 0.003 1E-07 55.1 2.6 21 142-162 49-69 (340)
412 1uf9_A TT1252 protein; P-loop, 95.9 0.0042 1.4E-07 49.5 3.1 25 138-162 7-31 (203)
413 1q3t_A Cytidylate kinase; nucl 95.9 0.0038 1.3E-07 51.6 3.0 27 135-161 12-38 (236)
414 1zd8_A GTP:AMP phosphotransfer 95.9 0.004 1.4E-07 51.0 3.0 23 138-160 6-28 (227)
415 3fb4_A Adenylate kinase; psych 95.9 0.0043 1.5E-07 50.2 3.1 20 141-160 2-21 (216)
416 3qks_A DNA double-strand break 95.9 0.0047 1.6E-07 50.2 3.3 21 140-160 24-44 (203)
417 3k1j_A LON protease, ATP-depen 95.9 0.0034 1.2E-07 59.5 2.7 35 130-164 51-85 (604)
418 2cdn_A Adenylate kinase; phosp 95.9 0.005 1.7E-07 49.3 3.4 25 137-161 18-42 (201)
419 2z0h_A DTMP kinase, thymidylat 95.9 0.0044 1.5E-07 49.1 3.1 21 141-161 2-22 (197)
420 2vli_A Antibiotic resistance p 95.9 0.0037 1.3E-07 49.0 2.5 24 138-161 4-27 (183)
421 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0045 1.5E-07 55.0 3.3 30 132-161 15-46 (359)
422 1ukz_A Uridylate kinase; trans 95.9 0.0052 1.8E-07 49.2 3.4 24 137-160 13-36 (203)
423 1zak_A Adenylate kinase; ATP:A 95.8 0.004 1.4E-07 50.8 2.6 24 138-161 4-27 (222)
424 3dl0_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 49.9 3.1 21 141-161 2-22 (216)
425 1xjc_A MOBB protein homolog; s 95.8 0.0054 1.9E-07 48.8 3.2 23 139-161 4-26 (169)
426 3qkt_A DNA double-strand break 95.8 0.0053 1.8E-07 53.8 3.3 23 137-160 22-44 (339)
427 3tlx_A Adenylate kinase 2; str 95.7 0.0077 2.6E-07 50.2 4.1 25 137-161 27-51 (243)
428 2pbr_A DTMP kinase, thymidylat 95.7 0.0056 1.9E-07 48.2 3.1 21 141-161 2-22 (195)
429 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0057 1.9E-07 51.5 3.3 23 139-161 4-26 (260)
430 1jbk_A CLPB protein; beta barr 95.7 0.0072 2.5E-07 46.8 3.5 25 138-162 42-66 (195)
431 1qf9_A UMP/CMP kinase, protein 95.7 0.0058 2E-07 48.0 2.9 23 139-161 6-28 (194)
432 3m6a_A ATP-dependent protease 95.7 0.0058 2E-07 57.2 3.4 30 132-162 102-131 (543)
433 2dhr_A FTSH; AAA+ protein, hex 95.7 0.008 2.7E-07 55.8 4.3 33 128-162 55-87 (499)
434 1via_A Shikimate kinase; struc 95.6 0.0058 2E-07 47.8 2.8 21 141-161 6-26 (175)
435 2pt5_A Shikimate kinase, SK; a 95.6 0.0068 2.3E-07 46.8 3.0 21 141-161 2-22 (168)
436 3r20_A Cytidylate kinase; stru 95.6 0.0068 2.3E-07 50.7 3.2 23 138-160 8-30 (233)
437 3lda_A DNA repair protein RAD5 95.6 0.0077 2.6E-07 54.3 3.8 26 134-159 173-198 (400)
438 1ls1_A Signal recognition part 95.6 0.0049 1.7E-07 53.2 2.4 25 138-162 97-121 (295)
439 3be4_A Adenylate kinase; malar 95.5 0.007 2.4E-07 49.3 3.0 23 139-161 5-27 (217)
440 3ice_A Transcription terminati 95.5 0.0069 2.4E-07 54.6 3.1 31 132-162 167-197 (422)
441 1e6c_A Shikimate kinase; phosp 95.5 0.0067 2.3E-07 47.0 2.6 21 141-161 4-24 (173)
442 3t15_A Ribulose bisphosphate c 95.4 0.013 4.6E-07 50.1 4.6 27 136-162 33-59 (293)
443 1yrb_A ATP(GTP)binding protein 95.4 0.014 4.9E-07 48.4 4.7 31 137-167 12-47 (262)
444 2ze6_A Isopentenyl transferase 95.4 0.008 2.7E-07 50.5 3.0 21 141-161 3-23 (253)
445 1lv7_A FTSH; alpha/beta domain 95.4 0.0078 2.7E-07 50.1 2.9 24 139-162 45-68 (257)
446 1e4v_A Adenylate kinase; trans 95.4 0.0076 2.6E-07 48.8 2.8 21 141-161 2-22 (214)
447 3bos_A Putative DNA replicatio 95.4 0.0097 3.3E-07 48.2 3.5 24 138-161 51-74 (242)
448 2xb4_A Adenylate kinase; ATP-b 95.4 0.0084 2.9E-07 49.1 3.0 21 141-161 2-22 (223)
449 1njg_A DNA polymerase III subu 95.3 0.0096 3.3E-07 47.8 3.2 22 140-161 46-67 (250)
450 2iyv_A Shikimate kinase, SK; t 95.3 0.0073 2.5E-07 47.5 2.4 21 141-161 4-24 (184)
451 3umf_A Adenylate kinase; rossm 95.3 0.01 3.4E-07 49.1 3.3 28 134-161 24-51 (217)
452 4ido_A Atlastin-1; GTPase, GTP 95.3 0.031 1.1E-06 51.2 6.8 23 138-160 66-88 (457)
453 1zuh_A Shikimate kinase; alpha 95.3 0.01 3.4E-07 46.0 3.1 23 139-161 7-29 (168)
454 1ak2_A Adenylate kinase isoenz 95.3 0.011 3.7E-07 48.7 3.4 24 138-161 15-38 (233)
455 3cf0_A Transitional endoplasmi 95.2 0.0094 3.2E-07 51.2 3.0 28 135-162 45-72 (301)
456 2r6a_A DNAB helicase, replicat 95.2 0.013 4.5E-07 53.4 4.2 34 128-161 192-225 (454)
457 1j8m_F SRP54, signal recogniti 95.2 0.0081 2.8E-07 51.9 2.4 29 132-161 92-120 (297)
458 3b9p_A CG5977-PA, isoform A; A 95.2 0.022 7.4E-07 48.3 5.1 26 137-162 52-77 (297)
459 2f6r_A COA synthase, bifunctio 95.2 0.011 3.7E-07 50.5 3.1 23 138-160 74-96 (281)
460 2p65_A Hypothetical protein PF 95.1 0.0099 3.4E-07 46.0 2.6 25 138-162 42-66 (187)
461 4fcw_A Chaperone protein CLPB; 95.1 0.01 3.5E-07 50.5 2.7 24 139-162 47-70 (311)
462 1sxj_E Activator 1 40 kDa subu 95.0 0.0085 2.9E-07 52.1 2.1 20 142-161 39-58 (354)
463 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.5E-07 47.3 3.1 25 137-161 10-34 (192)
464 3ake_A Cytidylate kinase; CMP 95.0 0.013 4.5E-07 46.7 3.1 21 141-161 4-24 (208)
465 1uj2_A Uridine-cytidine kinase 95.0 0.014 5E-07 48.6 3.3 24 138-161 21-44 (252)
466 2w58_A DNAI, primosome compone 94.9 0.015 5.2E-07 46.4 3.2 22 140-161 55-76 (202)
467 1p5z_B DCK, deoxycytidine kina 94.9 0.012 4.2E-07 49.3 2.6 26 137-162 22-47 (263)
468 1a7j_A Phosphoribulokinase; tr 94.9 0.011 3.6E-07 50.9 2.2 24 138-161 4-27 (290)
469 3v9p_A DTMP kinase, thymidylat 94.9 0.014 4.6E-07 48.6 2.8 26 136-161 22-47 (227)
470 2qby_A CDC6 homolog 1, cell di 94.8 0.01 3.5E-07 51.6 2.1 26 137-162 43-68 (386)
471 1ltq_A Polynucleotide kinase; 94.8 0.016 5.4E-07 49.3 3.1 22 140-161 3-24 (301)
472 4edh_A DTMP kinase, thymidylat 94.8 0.018 6.1E-07 47.3 3.3 24 138-161 5-28 (213)
473 2ce7_A Cell division protein F 94.8 0.025 8.5E-07 52.2 4.6 21 142-162 52-72 (476)
474 1fnn_A CDC6P, cell division co 94.8 0.015 5.1E-07 50.9 3.0 22 141-162 46-67 (389)
475 3h4m_A Proteasome-activating n 94.7 0.019 6.4E-07 48.3 3.4 27 136-162 48-74 (285)
476 4ad8_A DNA repair protein RECN 94.7 0.0048 1.7E-07 57.2 -0.4 28 132-160 54-81 (517)
477 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.033 1.1E-06 46.0 4.8 25 137-161 37-61 (262)
478 3n70_A Transport activator; si 94.7 0.024 8.3E-07 43.1 3.7 26 137-162 22-47 (145)
479 2qen_A Walker-type ATPase; unk 94.7 0.018 6.1E-07 49.4 3.2 22 140-161 32-53 (350)
480 3bh0_A DNAB-like replicative h 94.7 0.025 8.6E-07 49.0 4.2 30 131-160 60-89 (315)
481 3sr0_A Adenylate kinase; phosp 94.7 0.018 6.2E-07 47.0 3.1 21 141-161 2-22 (206)
482 3auy_A DNA double-strand break 94.6 0.0097 3.3E-07 52.8 1.5 25 135-160 22-46 (371)
483 2ocp_A DGK, deoxyguanosine kin 94.6 0.018 6.2E-07 47.5 3.0 23 139-161 2-24 (241)
484 3hr8_A Protein RECA; alpha and 94.6 0.022 7.7E-07 50.5 3.6 28 134-161 56-83 (356)
485 1sky_E F1-ATPase, F1-ATP synth 94.6 0.019 6.6E-07 52.8 3.3 27 135-161 147-173 (473)
486 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.048 1.6E-06 47.3 5.7 25 137-161 43-67 (322)
487 1sxj_D Activator 1 41 kDa subu 94.5 0.017 5.8E-07 49.9 2.8 21 142-162 61-81 (353)
488 3zvl_A Bifunctional polynucleo 94.5 0.021 7.3E-07 51.5 3.4 24 138-161 257-280 (416)
489 1ypw_A Transitional endoplasmi 94.5 0.015 5.3E-07 56.9 2.6 30 134-163 233-262 (806)
490 2chg_A Replication factor C sm 94.4 0.024 8.1E-07 44.9 3.2 20 142-161 41-60 (226)
491 3lv8_A DTMP kinase, thymidylat 94.4 0.023 7.8E-07 47.5 3.1 25 137-161 25-49 (236)
492 4tmk_A Protein (thymidylate ki 94.4 0.024 8.1E-07 46.6 3.1 24 138-161 2-25 (213)
493 3tmk_A Thymidylate kinase; pho 94.4 0.024 8.1E-07 46.7 3.1 24 138-161 4-27 (216)
494 2qmh_A HPR kinase/phosphorylas 94.3 0.027 9.3E-07 46.1 3.4 25 138-162 33-57 (205)
495 3ld9_A DTMP kinase, thymidylat 94.3 0.028 9.4E-07 46.6 3.4 25 137-161 19-43 (223)
496 1l8q_A Chromosomal replication 94.2 0.018 6E-07 49.7 2.1 23 139-161 37-59 (324)
497 3eie_A Vacuolar protein sortin 94.2 0.057 1.9E-06 46.6 5.3 25 137-161 49-73 (322)
498 1tue_A Replication protein E1; 94.1 0.032 1.1E-06 45.9 3.4 26 136-161 55-80 (212)
499 4ag6_A VIRB4 ATPase, type IV s 94.1 0.024 8.1E-07 50.4 2.7 25 138-162 34-58 (392)
500 3syl_A Protein CBBX; photosynt 94.0 0.03 1E-06 47.6 3.2 25 137-161 65-89 (309)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.81 E-value=3e-21 Score=168.18 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=103.7
Q ss_pred hHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCcc--------CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-cc
Q 026174 24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID--------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQ 94 (242)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~~daR~p~~s~~~~i~~~~--------~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~ 94 (242)
+.+.+.+.....+-+...++-|+|.|.+++++.++.++ .||+||++++..+.|.+||++.+..++++|+ ++
T Consensus 11 ~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 11 AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNG 90 (282)
T ss_dssp THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTC
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 34455555555555655566699999999987776654 2999999977788999999988888999998 66
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc
Q 026174 95 KGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174 (242)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t 174 (242)
.+...+.+. ..+.+....+.. ........+.+++++|.||||||||+|.|.|.....++..+++|
T Consensus 91 ~gi~~L~~~----------i~~~l~~~~~~~-----~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T 155 (282)
T 1puj_A 91 QGLNQIVPA----------SKEILQEKFDRM-----RAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155 (282)
T ss_dssp TTGGGHHHH----------HHHHHHHHHHHH-----HHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------
T ss_pred ccHHHHHHH----------HHHHHHHHHHHH-----HhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCee
Confidence 677776221 112222111100 00122345678999999999999999999999888889999999
Q ss_pred cceEEEEEeeCCceeEEeeccccchhc
Q 026174 175 THEVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 175 ~~~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
++.+.. ..+..+.++||||+..+.
T Consensus 156 ~~~~~~---~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 156 TSQQWV---KVGKELELLDTPGILWPK 179 (282)
T ss_dssp ---CCE---EETTTEEEEECCCCCCSC
T ss_pred eeeEEE---EeCCCEEEEECcCcCCCC
Confidence 876532 124578899999997653
No 2
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.79 E-value=1.8e-21 Score=174.64 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=129.7
Q ss_pred cchHHHHhhhhcC--CCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCC---hhHHHHHHHHcCCeEEEeec-cc
Q 026174 22 LNPLFIHRFYSAQ--PQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQ 94 (242)
Q Consensus 22 ~~~~~~~~~~~~~--p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~---~~~w~~~~~~~~~~v~~~s~-~~ 94 (242)
+++|+++.++... |.++. .+ .+|+++.++..++++++ +||+||++++. .+.|.++|++.|+.++++|+ ++
T Consensus 127 i~anvD~v~iv~a~~P~~~~--~~-i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSL--NI-IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCH--HH-HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCH--HH-HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4788888766544 55555 66 89999999989999888 69999998754 67899999999999999998 55
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc-eeecCCC--
Q 026174 95 KGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT-- 171 (242)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~-~~~~~~~-- 171 (242)
.+...+ +.. ..|..++|+|+||||||||+|+|+|... +.++...
T Consensus 204 ~gl~~L--------------------------------~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 204 DGLKPL--------------------------------EEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp BTHHHH--------------------------------HHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred cCHHHH--------------------------------HHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 554444 111 1377899999999999999999999877 6655433
Q ss_pred -C----cccceEEEEEeeCCceeEEeeccccchh-ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 172 -N----TTTHEVLGVMTKADTQICIFDTPGLMLN-KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 172 -~----~t~~~~~~~~~~~~~~~~liDtpG~~~~-~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
+ ++++...+++++ ...++|+||+... ..+.+..+....+.++++.++++++........+|+.++
T Consensus 251 ~G~g~~tt~~~~i~~v~q---~~~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r 321 (358)
T 2rcn_A 251 SGLGQHTTTAARLYHFPH---GGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIR 321 (358)
T ss_dssp --------CCCEEEECTT---SCEEEECHHHHTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHH
T ss_pred CCCCccceEEEEEEEECC---CCEecCcccHHHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHH
Confidence 2 344455565554 3468999998542 234566677778888999999988776666666655443
No 3
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.72 E-value=5.7e-18 Score=145.94 Aligned_cols=129 Identities=22% Similarity=0.353 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCcc-------CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHH
Q 026174 36 QQTDNETENDCDSVFDSSYFRIPTID-------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEE 107 (242)
Q Consensus 36 ~~~~~~~~~daR~p~~s~~~~i~~~~-------~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~ 107 (242)
+-+...+..|+|.|.+++++.++ ++ .||+||++++..+.|.+||++.|..+ ++|+ ++.+...+
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L------- 91 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLL------- 91 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHH-------
T ss_pred hCCEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHH-------
Confidence 33443344588999998887765 42 39999999877889999999988888 8888 44444433
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC-cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKS-VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 108 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~-~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
.. .+... .+++++|.||||||||+|.|.|.....++..+++|+..+.. ..+
T Consensus 92 -----------~~--------------~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~---~~~ 143 (262)
T 3cnl_A 92 -----------KK--------------LSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF---SLE 143 (262)
T ss_dssp -----------HH--------------HCCCTTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE---ECT
T ss_pred -----------HH--------------HHHHhhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE---EeC
Confidence 11 11112 68899999999999999999998877788888988876532 223
Q ss_pred ceeEEeeccccchhc
Q 026174 187 TQICIFDTPGLMLNK 201 (242)
Q Consensus 187 ~~~~liDtpG~~~~~ 201 (242)
..+.++||||+..+.
T Consensus 144 ~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 144 NGVKILDTPGILYKN 158 (262)
T ss_dssp TSCEEESSCEECCCC
T ss_pred CCEEEEECCCcccCc
Confidence 578899999998654
No 4
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=2.7e-19 Score=157.48 Aligned_cols=138 Identities=17% Similarity=0.081 Sum_probs=97.3
Q ss_pred cchHHHHhhhhc---CCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCCC----hhHHHHHHHHcCCeEEEeec-
Q 026174 22 LNPLFIHRFYSA---QPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE- 92 (242)
Q Consensus 22 ~~~~~~~~~~~~---~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~~----~~~w~~~~~~~~~~v~~~s~- 92 (242)
.++|+++.++.. .|.++. .+ .+|+++.++..+++.++ .||+||++++. .+.|.++|++.|++++++|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~--~~-i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST--AL-LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH--HH-HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCH--HH-HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecC
Confidence 588998886543 366766 55 79999999999999988 79999998754 68999999999999999998
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-
Q 026174 93 AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT- 171 (242)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~- 171 (242)
++.+...+ ..+.+|.+++++|+||||||||+|+|.|...+.++...
T Consensus 160 ~~~g~~~L---------------------------------~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 160 DQDSLADI---------------------------------IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp HHTTCTTT---------------------------------GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCCHHHH---------------------------------HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 55555555 12335889999999999999999999998766666544
Q ss_pred ------CcccceEEEEEeeCCceeEEeeccccch
Q 026174 172 ------NTTTHEVLGVMTKADTQICIFDTPGLML 199 (242)
Q Consensus 172 ------~~t~~~~~~~~~~~~~~~~liDtpG~~~ 199 (242)
++|+.... .... ..+++||||+..
T Consensus 207 ~~~~G~~tt~~~~~---~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 207 HLGRGKHTTRHVEL---IHTS-GGLVADTPGFSS 236 (307)
T ss_dssp --------CCCCCE---EEET-TEEEESSCSCSS
T ss_pred ecCCCcccccHHHH---hhcC-CEEEecCCCccc
Confidence 33333221 1111 457999999864
No 5
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.49 E-value=1.7e-15 Score=132.85 Aligned_cols=182 Identities=11% Similarity=0.087 Sum_probs=113.6
Q ss_pred cchHHHHhhhhc---CCCCCCCCCCCCCCCCCCCCCCCccCcc-CCCCCCCCCC---ChhHHHHHHHHcCCeEEEeec-c
Q 026174 22 LNPLFIHRFYSA---QPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-A 93 (242)
Q Consensus 22 ~~~~~~~~~~~~---~p~~~~~~~~~daR~p~~s~~~~i~~~~-~NK~DL~~~~---~~~~w~~~~~~~~~~v~~~s~-~ 93 (242)
.++|++..+... .|.+++ .. .+|++...+...++.++ .||+||+++. ..+.|.++|++.++.++++|+ +
T Consensus 76 ~~~naD~vliV~d~~~p~~s~--~~-l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~ 152 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNN--YL-LDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT 152 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCH--HH-HHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHhcCEEEEEEECCCCCCCH--HH-HHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence 355655554433 354444 33 46666666667777777 6999998764 267899999999999999999 5
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-
Q 026174 94 QKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN- 172 (242)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~- 172 (242)
+.+...+ +....+..++++|+||+|||||+|+|. ...+.++....
T Consensus 153 g~gi~~L---------------------------------~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~ 198 (302)
T 2yv5_A 153 GEGIDEL---------------------------------VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEK 198 (302)
T ss_dssp CTTHHHH---------------------------------HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---
T ss_pred CCCHHHH---------------------------------HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccc
Confidence 5555544 111237788999999999999999999 77776665544
Q ss_pred --cccceEE-EEEeeCCceeEEeeccccc-----hhcc------CCC--------------HHHHHHHHHHHHHHcCccc
Q 026174 173 --TTTHEVL-GVMTKADTQICIFDTPGLM-----LNKS------GYS--------------HKDVKVRVESAWSAVNLFE 224 (242)
Q Consensus 173 --~t~~~~~-~~~~~~~~~~~liDtpG~~-----~~~~------~~~--------------~~~~~~~i~~~l~~~~l~d 224 (242)
.+++.+. ..........+++|+||+. ...+ .++ ..+....+.++++.+++.+
T Consensus 199 ~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~ 278 (302)
T 2yv5_A 199 TERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC 278 (302)
T ss_dssp ------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH
T ss_pred cCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH
Confidence 2222110 0111112345788998864 1111 011 1112346788888888875
Q ss_pred -ccceeeecCCcccccc
Q 026174 225 -VLMVVFDVHRHLTRFV 240 (242)
Q Consensus 225 -~ll~v~D~~~g~~~~~ 240 (242)
..-.....++|..++.
T Consensus 279 ~~~~~~~~~ls~~~~R~ 295 (302)
T 2yv5_A 279 ERYKSYLKIIKVYLEEI 295 (302)
T ss_dssp HHHHHHHHHTTCCCTTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5566667777766554
No 6
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.47 E-value=5.2e-14 Score=126.72 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCccCcc--------CCCCCCCCCCC----hhHHHHH-HHHcCC---eEEEeec-ccccccchhhhHHHH
Q 026174 45 DCDSVFDSSYFRIPTID--------DPQNNNAAKKQ----EPTWDEK-YRERTD---RIVFGEE-AQKGKLRIFQEEEEE 107 (242)
Q Consensus 45 daR~p~~s~~~~i~~~~--------~NK~DL~~~~~----~~~w~~~-~~~~~~---~v~~~s~-~~~~~~~l~~~~~~~ 107 (242)
|++.+-++..+.+..++ .||+||++++. ...|+.. +++.|. .++++|+ ++.+...+.+.
T Consensus 80 D~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~---- 155 (369)
T 3ec1_A 80 DIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA---- 155 (369)
T ss_dssp ETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHH----
T ss_pred ECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHH----
Confidence 55555556555554322 49999998743 4567554 566675 6888888 56666555111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC-----cceeecCCCCcccceEEEEE
Q 026174 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVM 182 (242)
Q Consensus 108 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~-----~~~~~~~~~~~t~~~~~~~~ 182 (242)
+.... .+..++++|.+|+|||||+|+|.+. ....++..+++|+......
T Consensus 156 ----------I~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~- 209 (369)
T 3ec1_A 156 ----------INRYR---------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP- 209 (369)
T ss_dssp ----------HHHHH---------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE-
T ss_pred ----------HHhhc---------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE-
Confidence 11111 2456889999999999999999986 4556788899988755432
Q ss_pred eeCCceeEEeeccccchh
Q 026174 183 TKADTQICIFDTPGLMLN 200 (242)
Q Consensus 183 ~~~~~~~~liDtpG~~~~ 200 (242)
.+..+.++||||+...
T Consensus 210 --~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 210 --LESGATLYDTPGIINH 225 (369)
T ss_dssp --CSTTCEEEECCSCCCC
T ss_pred --eCCCeEEEeCCCcCcH
Confidence 2245789999999743
No 7
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.44 E-value=2.5e-14 Score=128.00 Aligned_cols=177 Identities=17% Similarity=0.136 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCCccCcc------------CCCCCCCCCCChhHHHHHHHH-c-CCeEEEeec-ccccccchhhhHHHHHH
Q 026174 45 DCDSVFDSSYFRIPTID------------DPQNNNAAKKQEPTWDEKYRE-R-TDRIVFGEE-AQKGKLRIFQEEEEERK 109 (242)
Q Consensus 45 daR~p~~s~~~~i~~~~------------~NK~DL~~~~~~~~w~~~~~~-~-~~~v~~~s~-~~~~~~~l~~~~~~~~~ 109 (242)
+++.++++.++.+++++ +||+|++++...+.|.+|++. . ++.....+. .......+
T Consensus 66 ~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------- 136 (357)
T 2e87_A 66 ERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRV--------- 136 (357)
T ss_dssp HHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH---------
T ss_pred HhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH---------
Confidence 34555666677776655 399999999999999999987 3 332111111 00000000
Q ss_pred HHHHHHHHHHHHHhh---hhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 110 HRALAKALLQAALER---QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 110 ~~~~~~~~l~~~l~~---~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
......+...+.. ..+.+............++++|+||||||||+|.|++.. ..++..+++|.....+.+...+
T Consensus 137 --~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 137 --ASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp --HHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC
Confidence 0000001111111 011111111112456789999999999999999999987 4466778888877777666655
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.++||||+....... ....+. .........++.+++|+|++.+.
T Consensus 214 ~~~~l~Dt~G~~~~~~~~-~~~~~~--~~~~~~~~~ad~illV~D~s~~~ 260 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISE-RNEIEK--QAILALRYLGNLIIYIFDPSEHC 260 (357)
T ss_dssp EEEEEEECTTTSSSCSTT-SCHHHH--HHHHGGGGTCSEEEEEECTTCTT
T ss_pred ceEEEEeCCCccccchhh-hhHHHH--HHHHHHHhcCCEEEEEEeCCccc
Confidence 678999999986432211 111111 11122334578999999987653
No 8
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.42 E-value=7.6e-14 Score=125.63 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCccC-------cc-CCCCCCCCCC----ChhHHHHH-HHHcCC---eEEEeec-ccccccchhhhHHHH
Q 026174 45 DCDSVFDSSYFRIPT-------ID-DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKLRIFQEEEEE 107 (242)
Q Consensus 45 daR~p~~s~~~~i~~-------~~-~NK~DL~~~~----~~~~w~~~-~~~~~~---~v~~~s~-~~~~~~~l~~~~~~~ 107 (242)
|++.|..+.++.+.. ++ .||+||++.+ ....|++. +++.|. .++++|+ ++.+...+.+.
T Consensus 78 D~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~---- 153 (368)
T 3h2y_A 78 DIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADA---- 153 (368)
T ss_dssp ETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHH----
T ss_pred ECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhh----
Confidence 444444444444433 22 4999998865 35667554 466676 7888898 66666655111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc------ceeecCCCCcccceEEEE
Q 026174 108 RKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGV 181 (242)
Q Consensus 108 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~------~~~~~~~~~~t~~~~~~~ 181 (242)
+... ..+..++++|.+|+|||||+|+|.+.. ...++..+++|+......
T Consensus 154 ----------l~~~---------------~~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~ 208 (368)
T 3h2y_A 154 ----------IEYY---------------RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP 208 (368)
T ss_dssp ----------HHHH---------------HTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE
T ss_pred ----------hhhh---------------cccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE
Confidence 1111 124578899999999999999998853 344778889998765432
Q ss_pred EeeCCceeEEeeccccchh
Q 026174 182 MTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 182 ~~~~~~~~~liDtpG~~~~ 200 (242)
+ ...+.++||||+..+
T Consensus 209 ~---~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 209 L---DEESSLYDTPGIINH 224 (368)
T ss_dssp S---SSSCEEEECCCBCCT
T ss_pred e---cCCeEEEeCCCcCcH
Confidence 2 234789999999754
No 9
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.39 E-value=7.1e-13 Score=119.49 Aligned_cols=91 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
..|+|||.||||||||+|+|++.. ..+++.|++|+....+.+...+..+.++||||+....+ +.+....+++..
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-----~~~~~g~~~l~~ 146 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-----DGRGRGKQVIAV 146 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC----------CHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-----hhhHHHHHHHHH
Confidence 379999999999999999999976 45788999999999999888888999999999974321 223345678888
Q ss_pred cCcccccceeeecCCcc
Q 026174 220 VNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~ 236 (242)
+.-+|++++|+|.+++.
T Consensus 147 i~~ad~il~vvD~~~p~ 163 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPL 163 (376)
T ss_dssp HHHCSEEEEEEETTSHH
T ss_pred HHhcCccccccccCccH
Confidence 88899999999998754
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=1.8e-13 Score=125.60 Aligned_cols=159 Identities=20% Similarity=0.212 Sum_probs=88.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCC-eEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS 139 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~-~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 139 (242)
.||+|+......+.|.+++ +.+. .++.+|+ ++.+..++.... ...+........+ .......
T Consensus 117 ~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i--------------~~~l~~~~~~~~~-~~~~~~~ 180 (439)
T 1mky_A 117 ANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI--------------IKKLEEKGLDLES-KPEITDA 180 (439)
T ss_dssp EESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH--------------HHHHHHTTCCSSS-CCCCCSC
T ss_pred EeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH--------------HHhcccccccchh-ccccccC
Confidence 4999996431122334555 4454 6778888 677766662211 1111110000000 0012345
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHH-HHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVK-VRVESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~i~~~l~ 218 (242)
.+++++|+||||||||+|.|+|.....+++.+++|+....+.+...+..+.++||||+..... ......+ ......+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~-~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR-VEPRTVEKYSNYRVVD 259 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC------------CCSCCHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccc-cchhhHHHHHHHHHHH
Confidence 689999999999999999999988777888899998766565656666788999999842211 0000000 01122344
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..++.+++++|+..+.+
T Consensus 260 ~i~~ad~vllv~d~~~~~~ 278 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGIT 278 (439)
T ss_dssp HHHHCSEEEEEEETTTCCC
T ss_pred HHhhCCEEEEEEeCCCCCC
Confidence 5556788889999887654
No 11
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=3.7e-13 Score=123.46 Aligned_cols=155 Identities=22% Similarity=0.248 Sum_probs=85.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHcC-CeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERT-DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS 139 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~-~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 139 (242)
.||+|+.+.+. .+.++| +.+ ..++.+|+ ++.+..++... +...+.... ........
T Consensus 118 ~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~--------------i~~~l~~~~-----~~~~~~~~ 175 (436)
T 2hjg_A 118 VNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDA--------------VAEHFKNIP-----ETKYNEEV 175 (436)
T ss_dssp EECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHH--------------HHHTGGGCC-----SSCCCTTC
T ss_pred EECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHH--------------HHHhcCccc-----cccccccC
Confidence 49999976421 112233 334 36788888 66666665211 111111100 00012345
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+++++|.+|||||||+|.|++.....++..+++|+......+...+..+.++||||+.......+..+ .......+..
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~~~~~ 254 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLRALKA 254 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCS-HHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHH-HHHHHHHHHH
Confidence 689999999999999999999987766788888888765444555556789999999853221111001 1122233445
Q ss_pred cCcccccceeeecCCccccc
Q 026174 220 VNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~~~~ 239 (242)
+..+|.+++|+|+..+.+.+
T Consensus 255 ~~~ad~~llv~D~~~~~s~~ 274 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQ 274 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHH
T ss_pred HHhCCEEEEEEcCCcCCcHH
Confidence 56678999999998876543
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.33 E-value=1.9e-13 Score=122.55 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=89.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC------------cccceEEEEEeeCCc---eeEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN------------TTTHEVLGVMTKADT---QICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~------------~t~~~~~~~~~~~~~---~~~li 192 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.... ......+++++|... .+++.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~ 98 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVY 98 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHH
Confidence 466789999999999999999999999999999988776543211 112245788887643 44677
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|+..+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 99 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV 147 (359)
T 3fvq_A 99 RNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA 147 (359)
T ss_dssp HHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 7777655444556677788999999999999999888999999999876
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.33 E-value=2.9e-13 Score=117.24 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=86.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc------------cceEEEEEeeCCc----eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------THEVLGVMTKADT----QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t------------~~~~~~~~~~~~~----~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.....+ .+..+++++|... ..++
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 46678999999999999999999999999999998776655332111 1235788887532 2245
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|...+.....+.+..+..+++.++++.+++.+........+||+++|.+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 152 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 55555544444566777788999999999999988888889999999876
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.32 E-value=3.1e-13 Score=121.98 Aligned_cols=114 Identities=12% Similarity=0.170 Sum_probs=91.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--------cccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--------TTTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--------~t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.... ......+++++|... .+++.|+..
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~ 97 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMS 97 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHT
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHH
Confidence 466789999999999999999999999999999988776543211 112245788888653 456778777
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV 142 (381)
T 3rlf_A 98 FGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (381)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH
Confidence 766566677788888999999999999998888899999999876
No 15
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.31 E-value=2.9e-13 Score=121.49 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=88.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------------cceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------------THEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------------~~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.....+ .+..+++++|... .+++
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV 122 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCH
Confidence 35678999999999999999999999999999998877655322111 1235788888653 3356
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+.+..+.++++.++++.+++.+........+||+++|.+
T Consensus 123 ~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRV 172 (366)
T 3tui_C 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV 172 (366)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 66665554455667777888999999999999988888899999999876
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.30 E-value=4e-13 Score=112.89 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=82.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... +...+++++|... .++
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT 98 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCC
Confidence 46678999999999999999999999999999998776644321110 1134777877542 234
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+..+.....+.+..+..+.+.++++.+++.+........+||+++|.+
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 99 ALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 555554433333444455567889999999999888888888999998876
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.29 E-value=8.2e-13 Score=118.98 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=84.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 105 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA 105 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 3567899999999999999999999999999999877664432111 11245788887642 445667766
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 106 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 150 (372)
T 1v43_A 106 FPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150 (372)
T ss_dssp TTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 654444556666778899999999999988888889999999876
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.28 E-value=1.3e-12 Score=120.40 Aligned_cols=156 Identities=23% Similarity=0.240 Sum_probs=86.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 026174 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (242)
Q Consensus 62 ~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~ 140 (242)
.||+|+.... ..+.++|.......+.+|+ ++.+..++. +...+.... ...........
T Consensus 138 ~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~L~-----------------~~i~~~l~~--~~~~~~~~~~~ 196 (456)
T 4dcu_A 138 VNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGDLL-----------------DAVAEHFKN--IPETKYNEEVI 196 (456)
T ss_dssp EECC-----------CCSGGGSSSSEEECCTTTCTTHHHHH-----------------HHHHTTGGG--SCSSCCCTTCE
T ss_pred EECccchhhh--hhHHHHHHcCCCceEEeecccccchHHHH-----------------HHHHhhccc--ccccccccccc
Confidence 4999997542 2333444433345667777 555555551 111111000 00011234567
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|+|||||+|.|++.....++..+++|+......+...+..+.++||||+..........+ +......+..+
T Consensus 197 ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e-~~~~~~~~~~~ 275 (456)
T 4dcu_A 197 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTE-KYSVLRALKAI 275 (456)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCS-HHHHHHHHHHH
T ss_pred eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHH-HHHHHHHHHHH
Confidence 88999999999999999999987777888888888765444555556789999999864321111111 22334455566
Q ss_pred CcccccceeeecCCccccc
Q 026174 221 NLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~~~ 239 (242)
.-+|++++|+|+..+.+.+
T Consensus 276 ~~ad~~llviD~~~~~~~~ 294 (456)
T 4dcu_A 276 DRSEVVAVVLDGEEGIIEQ 294 (456)
T ss_dssp HHCSEEEEEEETTTCCCHH
T ss_pred hhCCEEEEEEeCCCCcCHH
Confidence 7789999999998876543
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.28 E-value=5.6e-13 Score=119.37 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=87.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCC---ceeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKAD---TQICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~---~~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... .....+++++|.. +.+++.|+..
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 109 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVS 109 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 3567899999999999999999999999999999877664432111 1224578888753 2446667766
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 110 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv 154 (355)
T 1z47_A 110 FGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV 154 (355)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 654444556667778899999999999988888899999999876
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.28 E-value=6.8e-13 Score=119.13 Aligned_cols=114 Identities=8% Similarity=0.110 Sum_probs=87.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 97 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIA 97 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHH
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHH
Confidence 3567899999999999999999999999999999877664432111 11235788887642 446677776
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 142 (362)
T 2it1_A 98 FPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142 (362)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH
Confidence 654444556667778899999999999988888899999999876
No 21
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.28 E-value=1.1e-12 Score=114.73 Aligned_cols=105 Identities=24% Similarity=0.210 Sum_probs=67.4
Q ss_pred CccCcc-CCCCCCCCCCC---hhHHHHHHHHcCCeEEEeec-ccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026174 56 RIPTID-DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEE 130 (242)
Q Consensus 56 ~i~~~~-~NK~DL~~~~~---~~~w~~~~~~~~~~v~~~s~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~ 130 (242)
.++.++ .||+||.+... .+.|.+.|... ..++.+|+ ++.+..++
T Consensus 115 ~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~l------------------------------ 163 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEEL------------------------------ 163 (301)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHH------------------------------
T ss_pred CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHH------------------------------
Confidence 344444 59999987543 56788877665 77888888 55554444
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-------cccceEEEEEeeCCceeEEeecccc
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
+....+..++++|+||+|||||+|+|.|...+..+.... +|+... ........+++|+||+
T Consensus 164 ---f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~---~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 ---KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ---LLKFDFGGYVVDTPGF 231 (301)
T ss_dssp ---HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC---EEECTTSCEEESSCSS
T ss_pred ---HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE---EEEcCCCCEEEECcCC
Confidence 112237788999999999999999999988777665443 222221 1111234578999986
No 22
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.27 E-value=2e-11 Score=106.85 Aligned_cols=93 Identities=31% Similarity=0.484 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHH-HHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~i~~~l~ 218 (242)
..++++|.||||||||+|.|+|.....++..+++|++...+.+...+..+.++||||+..+.. ...+ ....+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~-----~l~~~~~~~~~~ 82 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD-----ALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-----HHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-----HHHHHHHHHHHH
Confidence 458899999999999999999988776778888898877666665566889999999874321 2222 2344566
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+.-+|.+++|+|+.++.+
T Consensus 83 ~l~~ad~il~VvD~~~~~~ 101 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPT 101 (301)
T ss_dssp HTSSCSEEEEEEETTSCCC
T ss_pred HHhcCCEEEEEEECCCCCC
Confidence 7788999999999987654
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.27 E-value=9.6e-13 Score=117.83 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=87.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-------------cccceEEEEEeeCC---ceeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------------TTTHEVLGVMTKAD---TQICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-------------~t~~~~~~~~~~~~---~~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.... ...+..+++++|.. ..+++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 466789999999999999999999999999999987766443211 11224578888764 24466
Q ss_pred eeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.|+..+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 77776654444556667778899999999999988888889999999876
No 24
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.26 E-value=6.6e-13 Score=119.07 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=85.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--------cccceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--------TTTHEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--------~t~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.... ......+++++|... .+++.|+..
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 97 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA 97 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHH
Confidence 356789999999999999999999999999999987766443211 111245788887642 446677776
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv 142 (359)
T 2yyz_A 98 FPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142 (359)
T ss_dssp GGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 654433444455567899999999999988888889999999876
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.26 E-value=1.2e-12 Score=112.76 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=82.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc------------cceEEEEEeeCCc---eeEEe
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------THEVLGVMTKADT---QICIF 192 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t------------~~~~~~~~~~~~~---~~~li 192 (242)
.++++++.+++|.+++|+|+||+|||||+++|+|...+..|.....+ ....+++++|... .+++.
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 118 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence 46678999999999999999999999999999998776544321110 1234778877542 23455
Q ss_pred eccccch-hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 193 DTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 193 DtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
|+..+.. ...+.+..+.++++.++++.+++.+........+||+++|++
T Consensus 119 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 168 (263)
T 2olj_A 119 NNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168 (263)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence 5554422 223445555567889999999999888877888999998876
No 26
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.26 E-value=1.1e-12 Score=110.94 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=81.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------------cceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------------THEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------------~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+..|.....+ +...+++++|... .++
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 46778999999999999999999999999999998877655432111 1124788887643 234
Q ss_pred Eeeccccchhcc---CCCHHHHHHHHHHHHHHcCccccc-ceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKS---GYSHKDVKVRVESAWSAVNLFEVL-MVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~---~~~~~~~~~~i~~~l~~~~l~d~l-l~v~D~~~g~~~~~i 241 (242)
+.|+..+..... ..+..+..+++.++++.+++.+.. ......+||+++|.+
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 555554422111 345566677889999999998754 566778899988876
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.26 E-value=1.2e-12 Score=117.87 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=87.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC--------------cccceEEEEEeeCCc---eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN--------------TTTHEVLGVMTKADT---QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~--------------~t~~~~~~~~~~~~~---~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.... ......+++++|... .++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~lt 97 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMT 97 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCC
Confidence 456789999999999999999999999999999987765443211 111235788887642 446
Q ss_pred EeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|+..+.....+.+..+.++++.++++.+++.++.......+||+++|.+
T Consensus 98 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 148 (372)
T 1g29_1 98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148 (372)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHH
Confidence 677776654444556667778899999999999988888889999999876
No 28
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.26 E-value=1.4e-11 Score=107.96 Aligned_cols=99 Identities=34% Similarity=0.469 Sum_probs=74.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC-CceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
++...|+++|.+|||||||+|.|+|.....++..+++|+....+..... +..+.++||||+..+... ....+.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~--~~l~~~~~~~ 85 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS--DVLGHSMVEI 85 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT--CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc--hhHHHHHHHH
Confidence 4566788999999999999999999887777888999998877776665 668899999999753311 1111222334
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+...+.-+|++++|+|+.++.+
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~ 107 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWR 107 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSC
T ss_pred HHHHhhcCCEEEEEEeCCCCCC
Confidence 4555667899999999988754
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.25 E-value=1.3e-12 Score=112.42 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=81.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Ccc---------------------cceEEEEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTT---------------------THEVLGVMTK 184 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~t---------------------~~~~~~~~~~ 184 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +.. .+..+++++|
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q 100 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 100 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence 35678999999999999999999999999999998776544321 100 1234678877
Q ss_pred CCc---eeEEeeccccch-hccCCCHHHHHHHHHHHHHHcCcccc-cceeeecCCccccccc
Q 026174 185 ADT---QICIFDTPGLML-NKSGYSHKDVKVRVESAWSAVNLFEV-LMVVFDVHRHLTRFVI 241 (242)
Q Consensus 185 ~~~---~~~liDtpG~~~-~~~~~~~~~~~~~i~~~l~~~~l~d~-ll~v~D~~~g~~~~~i 241 (242)
... .+++.|+..+.. ...+.+..+.+.++.++++.+++.+. .......+||+++|.+
T Consensus 101 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 101 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred CcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH
Confidence 532 234555554422 22344555556788999999999887 7777788999988876
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.24 E-value=1.4e-12 Score=111.84 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=81.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc---------cceEEEEEeeCCc---eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT---------THEVLGVMTKADT---QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t---------~~~~~~~~~~~~~---~~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... ....+++++|... .+++.|..
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 35678999999999999999999999999999998776654321111 1234677777532 23445554
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+.....+.+..+..+.+.++++.+++.+.....+..+||+++|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 155 (256)
T 1vpl_A 110 RFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL 155 (256)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence 4432223344455567788999999999887777888999998876
No 31
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.22 E-value=5.7e-11 Score=94.78 Aligned_cols=96 Identities=26% Similarity=0.384 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
++.+++++|.+|||||||+|.|++.....++..+++|+......+...+..+.++||||+.... .. .....+...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~-~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS---DE-VERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS---SH-HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch---hH-HHHHHHHHHH
Confidence 4678999999999999999999997655566677777765555555555567899999985321 11 1112244455
Q ss_pred HHcCcccccceeeecCCccc
Q 026174 218 SAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~~ 237 (242)
..+.-++.+++|+|..++.+
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s 98 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDA 98 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCC
T ss_pred HHHHhCCEEEEEEECCCCCC
Confidence 56677899999999987653
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.21 E-value=3e-12 Score=109.68 Aligned_cols=114 Identities=14% Similarity=0.046 Sum_probs=80.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc---c------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT---T------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~---t------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... +. . .+..+++++|... .+++.|
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 36678999999999999999999999999999998776644321 11 0 0124677777542 234555
Q ss_pred ccccchhc--cC-----------CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 194 TPGLMLNK--SG-----------YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~--~~-----------~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+.... .+ .+..+...++.++++.+++.+.....+..+||+++|.+
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 55443221 12 23344567789999999999888888888999998876
No 33
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.19 E-value=5.9e-12 Score=107.71 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=81.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchhcc-C
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLNKS-G 203 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~-~ 203 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|... ....+++++|... .+++.|+..+..... +
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 36678999999999999999999999999999998877655543 2345778877542 234555554432111 1
Q ss_pred ---CCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 204 ---YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ---~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.......+++.++++.+++.+........+||+++|.+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH
Confidence 12334456788999999999887777888999998876
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.17 E-value=4.6e-12 Score=109.17 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=79.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... ......++++|... .+++.|+
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 105 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEV 105 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHH
Confidence 3667899999999999999999999999999999877664432111 11234677776532 2344454
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+..... ...+.++++.++++.+++.+........+||+++|++
T Consensus 106 l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv 150 (266)
T 4g1u_C 106 IQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRV 150 (266)
T ss_dssp HHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHH
T ss_pred HHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 44332211 2233456788999999999988888888999999876
No 35
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.16 E-value=2.7e-11 Score=102.90 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=61.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-CcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~i~ 214 (242)
....+|+|+|.+|||||||+|.|+|......+..+ ++|+....+.....+..+.++||||+....... ..+. .....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHH
Confidence 34678999999999999999999998765444333 466666666666666788999999996321110 0111 12223
Q ss_pred HHHHHcCcccccceeeecCC
Q 026174 215 SAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~ 234 (242)
.+.....-.|.+++|+|+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB
T ss_pred HHHhcCCCCCEEEEEEeCCC
Confidence 33445578899999999864
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.16 E-value=2.9e-12 Score=114.46 Aligned_cols=111 Identities=10% Similarity=0.050 Sum_probs=81.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc--------cceEEEEEeeCCc---eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT--------THEVLGVMTKADT---QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t--------~~~~~~~~~~~~~---~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... ....+++++|... .+++.|+..
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~ 94 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLE 94 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHH
Confidence 35678999999999999999999999999999998877655332111 1234677877542 345666665
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.....+.+.. +++.++++.+++.++.......+||+++|.+
T Consensus 95 ~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv 136 (348)
T 3d31_A 95 FGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136 (348)
T ss_dssp HHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH
T ss_pred HHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 54332222222 6788999999999988888889999999876
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.15 E-value=1.4e-10 Score=95.63 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEe-eCCceeEEeeccccchhccCCC-HHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~-~~~~~~~i~ 214 (242)
...+|+++|.+|||||||+|.|++.. ...++..+++|.......+. ..+..+.++||||+........ .......+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45678999999999999999999976 44566777777765443333 3345788999999864322222 233344556
Q ss_pred HHHHHcCcccccceeeecCCccc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.++......|.+++|+|..++.+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCC
Confidence 67777777888999999987654
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.14 E-value=3.2e-12 Score=106.79 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=76.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc-----ccceEEEEEeeCCc---eeEEeeccccch
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-----TTHEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~-----t~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..+..
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA 103 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 3566899999999999999999999999999999877665543211 12345677777542 224445544322
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+. ..+ ...+.++++.+++.+. -.....+||+++|.+
T Consensus 104 ~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 104 SLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRV 142 (214)
T ss_dssp HHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH
T ss_pred HhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH
Confidence 22221 112 4567889999999887 666778888888875
No 39
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.14 E-value=1.1e-10 Score=100.75 Aligned_cols=95 Identities=22% Similarity=0.412 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+++|.+|||||||+|.|+|.. ..++..+++|.....+.+...+..+.++||||..............+.+.....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4578999999999999999999987 457888898887776666655668889999998643211011112233333334
Q ss_pred HcCcccccceeeecCC
Q 026174 219 AVNLFEVLMVVFDVHR 234 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~ 234 (242)
..+.+|.+++|+|+++
T Consensus 82 ~~~~~d~ii~VvD~~~ 97 (274)
T 3i8s_A 82 LSGDADLLINVVDASN 97 (274)
T ss_dssp HHTCCSEEEEEEEGGG
T ss_pred hhcCCCEEEEEecCCC
Confidence 4577899999999876
No 40
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.14 E-value=3.5e-12 Score=109.83 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=78.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------cceEEEEEeeCCc----eeEEeeccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------THEVLGVMTKADT----QICIFDTPG 196 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------~~~~~~~~~~~~~----~~~liDtpG 196 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.....+ ....+++++|... ..++.|...
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 46678999999999999999999999999999998776655432111 1234678877531 123444443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcc--cccceeeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLF--EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~--d~ll~v~D~~~g~~~~~i 241 (242)
+..... .+..+.++++.++++.+++. +........+||+++|++
T Consensus 102 ~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 102 FAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp HTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH
Confidence 322111 22223346688899999998 877777788999998876
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.13 E-value=4.2e-11 Score=104.73 Aligned_cols=92 Identities=33% Similarity=0.522 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccc-hhccCCCHHHHHHH-HHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVR-VES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~-i~~ 215 (242)
+...++++|+||||||||+|.|+|.....++..+++|++...+++.+.+..+.++||||+. .+. ...... ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHHH
Confidence 3457899999999999999999998876677788889888778877777788999999986 221 111111 112
Q ss_pred HHHHcCcccccceeeecCC
Q 026174 216 AWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~ 234 (242)
+...+...|.+++|+|...
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR 100 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC
T ss_pred HHHHHhcCCEEEEEEeCCC
Confidence 2344566788999999854
No 42
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.12 E-value=4.4e-10 Score=95.37 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=67.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-cccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...+|+|+|.+|||||||+|.|++......+..+. +|+....+.+...+..+.++||||+..... ....-.+.....+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~-~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD-HCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSC-CCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCC-CHHHHHHHHHHHH
Confidence 45679999999999999999999976554444444 566655555556667889999999874322 2222222334445
Q ss_pred HHHcCcccccceeeecCC
Q 026174 217 WSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~ 234 (242)
...+.-.|.+++|+|+..
T Consensus 100 ~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHTTCCSEEEEEEETTC
T ss_pred HhcCCCCcEEEEEEeCCC
Confidence 556778899999999874
No 43
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.11 E-value=2e-10 Score=98.23 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+|+++|.+|||||||+|.|+|... .++..+++|.....+.+...+..+.++||||+.............+.+....-.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 3688999999999999999999863 477889999887777766666688999999985322110000112222222222
Q ss_pred cCcccccceeeecCC
Q 026174 220 VNLFEVLMVVFDVHR 234 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~ 234 (242)
..-.|.+++|+|+++
T Consensus 81 ~~~~d~vi~VvDas~ 95 (256)
T 3iby_A 81 DLEYDCIINVIDACH 95 (256)
T ss_dssp HSCCSEEEEEEEGGG
T ss_pred hCCCCEEEEEeeCCC
Confidence 266899999999876
No 44
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.11 E-value=4.9e-12 Score=107.44 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=75.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc--------ccceEEEEEeeCCc---eeEEeecccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT--------TTHEVLGVMTKADT---QICIFDTPGL 197 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~--------t~~~~~~~~~~~~~---~~~liDtpG~ 197 (242)
++++++.+++ ..++|+|+||+|||||+++|+|...+..|..... .....+++++|... .+++.|+..+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHH
Confidence 5678999999 9999999999999999999999877665432111 11234566666432 2234444433
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.....+ ....++++.++++.+++.+........+||+++|.+
T Consensus 94 ~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 135 (240)
T 2onk_A 94 GLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135 (240)
T ss_dssp TCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred HHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 221111 122256788999999999888877888999998876
No 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.11 E-value=9e-12 Score=108.07 Aligned_cols=114 Identities=9% Similarity=-0.013 Sum_probs=78.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc------------cceEEEEEeeCCc-----eeE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------THEVLGVMTKADT-----QIC 190 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t------------~~~~~~~~~~~~~-----~~~ 190 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... ....+++++|... .++
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~lt 115 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGER 115 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSB
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCC
Confidence 35678999999999999999999999999999998776644321111 1234677776421 124
Q ss_pred Eeeccccchh----ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 191 IFDTPGLMLN----KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 191 liDtpG~~~~----~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.|...+... ..+....+..+++.++++.+++.+.....+..+||+++|++
T Consensus 116 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp HHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred HHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 5555443211 01112234456788999999999888777888999998876
No 46
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.10 E-value=1.5e-10 Score=106.15 Aligned_cols=93 Identities=27% Similarity=0.340 Sum_probs=59.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhc-cCCCHHHHHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK-SGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~i~~~l~~ 219 (242)
.|+++|.||||||||+|.|++.....+++.+++|+....+.+...+..+.++||||+.... ..+. ..+ ..++...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~-~~~---~~~~~~~ 78 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS-QKM---KEVTLNM 78 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCC-HHH---HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHH-HHH---HHHHHHH
Confidence 5789999999999999999998766678889999887766666666788999999986321 1111 122 2344556
Q ss_pred cCcccccceeeecCCccc
Q 026174 220 VNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~~ 237 (242)
+.-+|.+++|+|...+.+
T Consensus 79 ~~~ad~il~V~D~~~~~~ 96 (439)
T 1mky_A 79 IREADLVLFVVDGKRGIT 96 (439)
T ss_dssp HTTCSEEEEEEETTTCCC
T ss_pred HHhCCEEEEEEECCCCCC
Confidence 778899999999987654
No 47
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.09 E-value=1.3e-11 Score=104.65 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=77.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-----------cceEEEEEeeCCc---eeEEee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-----------THEVLGVMTKADT---QICIFD 193 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-----------~~~~~~~~~~~~~---~~~liD 193 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.....+ ....+++++|... .+++.|
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 100 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH
Confidence 35678999999999999999999999999999998776654321110 1123778877542 234555
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcC-cccccceeeecCCccccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVN-LFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~-l~d~ll~v~D~~~g~~~~~i 241 (242)
+..+... ...+..+..+.+.++++.++ +.+........+||+++|++
T Consensus 101 nl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv 148 (240)
T 1ji0_A 101 NLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML 148 (240)
T ss_dssp HHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHH
T ss_pred HHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHH
Confidence 5544221 11223344567888899994 88877777788999998876
No 48
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.09 E-value=4.1e-10 Score=94.49 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=60.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC-CCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....+|+|+|.+|||||||+|.|+|......+.. .++|.......+...+..+.++||||+..... +..+....+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~--~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV--PNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-------CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC--CHHHHHHHHHH
Confidence 3456789999999999999999999776433322 25566655555555566889999999975322 22333333444
Q ss_pred HH-HHcCcccccceeeecCC
Q 026174 216 AW-SAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 216 ~l-~~~~l~d~ll~v~D~~~ 234 (242)
.+ ....-.+.+++|+|+..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGR 124 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTC
T ss_pred HHHhcCCCCcEEEEEeeCCC
Confidence 33 34455789999999753
No 49
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.08 E-value=3.7e-10 Score=101.41 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=61.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|+||||||||+|.|+|... .+++.+++|+....+.+...+..+.++||||+.... +.. ..+.+...++.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l---p~~-lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI---PPQ-IVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC---CGG-GHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC---CHH-HHHHHHHHHHHH
Confidence 389999999999999999999865 456677888776666666555678899999985422 222 223356677788
Q ss_pred CcccccceeeecCCcc
Q 026174 221 NLFEVLMVVFDVHRHL 236 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~ 236 (242)
..+|.+++|+|++++.
T Consensus 256 ~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 256 KYSDALILVIDSTFSE 271 (364)
T ss_dssp GGSSEEEEEEETTSCH
T ss_pred HhCCEEEEEEECCCCc
Confidence 8899999999987754
No 50
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.06 E-value=3e-11 Score=103.08 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=76.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCc---eeEEeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADT---QICIFDT 194 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~---~~~liDt 194 (242)
.++++++.+.+|..++|+|+||+|||||+++|+|...+. |...... .....++++|... .+++.|+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 466789999999999999999999999999999988776 6432111 1124677777542 2244444
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+.. ....+ .+.+.++++.+++.+........+||+++|.+
T Consensus 94 l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv 135 (249)
T 2qi9_C 94 LTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135 (249)
T ss_dssp HHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 43321 11111 45688899999999888777888999998876
No 51
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.03 E-value=2e-10 Score=105.22 Aligned_cols=93 Identities=22% Similarity=0.371 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHH-HHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV-ESAWS 218 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i-~~~l~ 218 (242)
..|+++|.||||||||+|.|+|.....+++.+++|+....+.+...+..+.++||||+...... ..+.+ ..+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~-----~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP-----FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C-----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh-----HHHHHHHHHHH
Confidence 4689999999999999999999877667888999988766655555567899999998632111 22222 23344
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+.-+|.+++|+|...|.+
T Consensus 79 ~~~~ad~il~vvD~~~~~~ 97 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVT 97 (436)
T ss_dssp HHHHCSEEEEEEETTTCSC
T ss_pred HHHhCCEEEEEEeCCCCCC
Confidence 5566899999999988754
No 52
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.03 E-value=6.2e-10 Score=95.45 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+++++|++|||||||+|.|+|... .++..++.|.....+.+...+..+.++||||+... ......+ .+....-
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~~---~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL-TAHSIDE---LIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCC-CSSCHHH---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccc-ccCCHHH---HHHHHhh
Confidence 35689999999999999999999866 57788888887766666666667899999998632 2222222 2222222
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
...-+|.+++|+|++++
T Consensus 78 ~~~~~d~vi~v~D~~~~ 94 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCL 94 (271)
T ss_dssp HTTCCSEEEEEEEGGGH
T ss_pred hccCCcEEEEEecCCcc
Confidence 34568899999998764
No 53
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.02 E-value=4.1e-10 Score=104.48 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=50.8
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVE 214 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~i~ 214 (242)
...+..|+++|.+|||||||+|.|++.....++..+++|+......+...+..+.++||||+.... ... ...+.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~-----~~ve~~gi~ 304 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-----EEIEHEGIR 304 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch-----hHHHHHHHH
Confidence 345778999999999999999999998766678888898886655555556678999999985321 111 12245
Q ss_pred HHHHHcCcccccceeeecCCcccc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..+.-+|.+++|+|.+.+.+.
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~ 328 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLD 328 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSG
T ss_pred HHHhhcccCCEEEEEEECCCCcch
Confidence 556677889999999999887643
No 54
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=3e-10 Score=102.89 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=72.1
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeeccc
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPG 196 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG 196 (242)
..+..+..++|+|+||||||||+|+|+|.....++..|++|.....+.+...+ ..+.++|+||
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 45677899999999999999999999997765678889999887777665443 2468999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
+....+.... ....++..+.-.|.+++|+|...
T Consensus 95 l~~~~s~~e~-----L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVG-----LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSS-----SCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHH-----HHHHHHHHHHHHHHHHHHHhccc
Confidence 9765443111 11234556667889999999864
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.01 E-value=9.7e-10 Score=88.34 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCC-HHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~i~~ 215 (242)
....++++|.+|||||||+|.|.+.. ....+..+++|.......+ +..+.++||||+........ ..........
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 46778999999999999999999875 4445566666665443222 34788999999754321100 1222233444
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
++......+.+++|+|+.++.+
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~ 120 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPS 120 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC
T ss_pred HHhhhhcCCEEEEEEECCCCCC
Confidence 5555555689999999987654
No 56
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.00 E-value=5.8e-10 Score=102.73 Aligned_cols=95 Identities=21% Similarity=0.359 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+|+|.||||||||+|.|+|.....+.+.+++|+....+.+...+..+.++||||+...... -.++.. ..+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~-~~~~~~---~~~~~ 98 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP-FLAQIR---QQAEI 98 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------C-CHHHHH---HHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchH-HHHHHH---HHHHh
Confidence 45789999999999999999999877667788899988776655555567899999998632111 122222 23334
Q ss_pred HcCcccccceeeecCCccc
Q 026174 219 AVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..+|.+++|+|...+.+
T Consensus 99 ~~~~ad~il~VvD~~~~~~ 117 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVT 117 (456)
T ss_dssp HHHHCSEEEEEEESSSCSC
T ss_pred hHhhCCEEEEEEeCCCCCC
Confidence 4556789999999877654
No 57
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.99 E-value=1.5e-09 Score=92.79 Aligned_cols=92 Identities=26% Similarity=0.283 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...++++|.+|||||||+|.|+|.... ++..+++|.....+.+...+..+.++||||..... ....++ .....++.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~-~~~~~e--~v~~~~~~ 80 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG-YSSIDE--KIARDYLL 80 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC-SSSHHH--HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC-CCCHHH--HHHHHHHh
Confidence 356899999999999999999997654 67778888877766665555678999999986321 222211 11222222
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
..-.|.+++|+|+++.
T Consensus 81 -~~~~d~ii~V~D~t~~ 96 (258)
T 3a1s_A 81 -KGDADLVILVADSVNP 96 (258)
T ss_dssp -HSCCSEEEEEEETTSC
T ss_pred -hcCCCEEEEEeCCCch
Confidence 2567899999998764
No 58
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.98 E-value=1.6e-09 Score=86.60 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCC-HHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVESA 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~i~~~ 216 (242)
...+++++|.+|||||||+|.|.+......+..++++...... ..+..+.++||||+........ ..........+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3457899999999999999999998755566667777654432 2235678999999754322110 12223334555
Q ss_pred HHHcCcccccceeeecCCccc
Q 026174 217 WSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~~ 237 (242)
+......+.+++|+|...+.+
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~ 119 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQ 119 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCC
T ss_pred HhcCcCceEEEEEecCCCCCC
Confidence 666666789999999877644
No 59
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.98 E-value=3e-10 Score=105.52 Aligned_cols=97 Identities=21% Similarity=0.339 Sum_probs=72.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccc-hhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~i~~ 215 (242)
..+..|+++|.||||||||+|.|++.....+++.+++|+......+...+..+.++||||+. ......+. ..+..
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~----~gi~~ 316 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER----LGIER 316 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC----CCHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHH----HHHHH
Confidence 45678999999999999999999998766678889999887666665566678999999986 32211111 11234
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..+..+|.+++|+|++++.+
T Consensus 317 ~~~~~~~aD~vl~VvD~s~~~s 338 (482)
T 1xzp_A 317 TLQEIEKADIVLFVLDASSPLD 338 (482)
T ss_dssp HHHHHHHCSEEEEEEETTSCCC
T ss_pred HHHHhhcccEEEEEecCCCCCC
Confidence 4556677899999999987653
No 60
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.98 E-value=2e-09 Score=87.66 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=56.6
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCc-ceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCC-CHHHHHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY-SHKDVKV 211 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~ 211 (242)
+.+.++..++++|+||||||||+|.|+|.. ...+...++++.... .+... ....++||||+....... .......
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEE-TTEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEec-CCEEEEECcCCcccccCHHHHHHHHH
Confidence 567889999999999999999999999976 233344455554322 22222 267799999985321111 1122233
Q ss_pred HHHHHHHHcCcccccceeeecCCcc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.+..++......+.+++++|+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~ 122 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPL 122 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred HHHHHHHhhhcccEEEEEEECCCCC
Confidence 3444555556677778888876653
No 61
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.97 E-value=1.7e-09 Score=83.84 Aligned_cols=93 Identities=29% Similarity=0.344 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
.+++++|.+|+|||||+|.+.+......+..++++.......+...+..+.++||||...... .. . .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~-~---~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WE-K---KIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CC-H---HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hH-H---HHHHHHHHH
Confidence 357899999999999999999876544555566666554444444556788999999864221 11 1 112233445
Q ss_pred cCcccccceeeecCCccc
Q 026174 220 VNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~g~~ 237 (242)
+...+.+++++|..++.+
T Consensus 77 ~~~~~~~i~v~d~~~~~~ 94 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELT 94 (161)
T ss_dssp TTTCSEEEEEEESSSCCC
T ss_pred HHhCCEEEEEEECCCccc
Confidence 678899999999987644
No 62
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.97 E-value=2.1e-09 Score=84.74 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~ 219 (242)
..++++|++|||||||+|.|++.... .+..+++|.....+.+...+..+.++||||..... ..... +.....++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~--~~~~~~~~~~ 79 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-ANSID--EIIARDYIIN 79 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSS-SSSHH--HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCC-Ccchh--HHHHHHHHhc
Confidence 56899999999999999999986542 44556666655555554445678899999985321 11111 1112222221
Q ss_pred cCcccccceeeecCC
Q 026174 220 VNLFEVLMVVFDVHR 234 (242)
Q Consensus 220 ~~l~d~ll~v~D~~~ 234 (242)
.-++.+++++|..+
T Consensus 80 -~~~~~~i~v~D~~~ 93 (165)
T 2wji_A 80 -EKPDLVVNIVDATA 93 (165)
T ss_dssp -HCCSEEEEEEETTC
T ss_pred -CCCCEEEEEecCCc
Confidence 24688899999865
No 63
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.95 E-value=9.8e-11 Score=99.81 Aligned_cols=114 Identities=15% Similarity=0.060 Sum_probs=68.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC--cceeecCCCCccc-----------ceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTT-----------HEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~--~~~~~~~~~~~t~-----------~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|. ..+..|.....+. +...++++|... .+++
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTI 97 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCH
Confidence 36678999999999999999999999999999997 4454443211110 112344555432 1233
Q ss_pred eeccccchh-ccC--CCHHHHHHHHHHHHHHcCc-ccccceeeec-CCccccccc
Q 026174 192 FDTPGLMLN-KSG--YSHKDVKVRVESAWSAVNL-FEVLMVVFDV-HRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~~-~~~--~~~~~~~~~i~~~l~~~~l-~d~ll~v~D~-~~g~~~~~i 241 (242)
.|...+... ..+ ....+....+.++++.+++ .++....+.. +||+++|++
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 343332211 111 2234445678889999999 4666666666 888888875
No 64
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.95 E-value=8.4e-10 Score=100.58 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccc-eEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH-EVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
..+..++|+|+||+|||||+|+|+|...+..+........ ...+++++.. ..++++|+||+... +..+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~---------~~~~ 137 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST---------NFPP 137 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS---------SCCH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch---------HHHH
Confidence 4455999999999999999999999766554432111110 0114555543 36789999998632 1246
Q ss_pred HHHHHHcCcccccceee
Q 026174 214 ESAWSAVNLFEVLMVVF 230 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~ 230 (242)
.++++.+++.+....++
T Consensus 138 ~~~L~~~~L~~~~~~~~ 154 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII 154 (413)
T ss_dssp HHHHHHTTGGGCSEEEE
T ss_pred HHHHHHcCCCccCCeEE
Confidence 77888888877544443
No 65
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=3.3e-10 Score=101.60 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeeccccchhc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK 201 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 201 (242)
+..++++|.||||||||+|+|++.. ..++..|++|.....+.+...+ ..+.++||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3578999999999999999999876 4567778888776555444332 357899999986421
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
...+....+++..+.-+|.+++|+|+++.
T Consensus 81 -----~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 81 -----SKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp -----HHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred -----cccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 11111123455667778999999999763
No 66
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.95 E-value=4.2e-10 Score=101.96 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=55.6
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-----------------ceeEEeecc
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTP 195 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtp 195 (242)
...+..+..++++|.||||||||+|+|++... .++..|++|.....+.+...+ ..+.++|||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIA 94 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECC
Confidence 44567788899999999999999999999765 577788888776666554322 247899999
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~ 234 (242)
|+....+. .+.....++..+.-+|.+++|+|+.+
T Consensus 95 Gl~~~as~-----~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 95 GLVKGAHN-----GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp C----------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred Ccccccch-----hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 99743211 11122345667778899999999864
No 67
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.94 E-value=2.8e-10 Score=97.97 Aligned_cols=114 Identities=10% Similarity=0.006 Sum_probs=72.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc--ceeecCCC--Ccc--------c-ceEEEEEeeCCc---eeEE
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK--VAAVSRKT--NTT--------T-HEVLGVMTKADT---QICI 191 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~--~~~~~~~~--~~t--------~-~~~~~~~~~~~~---~~~l 191 (242)
.++++++.+++|..++|+|+||+|||||+++|+|.. .+..|... +.. + ...+++++|... .+++
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 366789999999999999999999999999999973 34434321 110 0 122567776532 1222
Q ss_pred eeccccch-------hccCCCHHHHHHHHHHHHHHcCcc-cccceeee-cCCccccccc
Q 026174 192 FDTPGLML-------NKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFD-VHRHLTRFVI 241 (242)
Q Consensus 192 iDtpG~~~-------~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D-~~~g~~~~~i 241 (242)
.+...+.. .....+..+...++.++++.+++. ++....+. .+||+++|++
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 33322211 000123445566788999999996 45555555 4888888875
No 68
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.93 E-value=1.8e-09 Score=93.11 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...|+++|.||||||||+|.|+|... .++..+++|.....+.+.. +..+.++||||.... ......+ .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~-~~~~~~e--~v~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSM-SPYSPEA--KVARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCS-SCSSHHH--HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCcc-CCCChHH--HHHHHHHh
Confidence 35689999999999999999999753 4677788888777666544 557889999998532 1222211 11222332
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
..-+|.+++|+|+++.
T Consensus 78 -~~~~d~vi~V~D~t~~ 93 (272)
T 3b1v_A 78 -SQRADSILNVVDATNL 93 (272)
T ss_dssp -TTCCSEEEEEEEGGGH
T ss_pred -cCCCCEEEEEecCCch
Confidence 2458899999998763
No 69
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.93 E-value=1.2e-10 Score=100.48 Aligned_cols=113 Identities=7% Similarity=0.002 Sum_probs=71.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc----------cceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT----------THEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t----------~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... ....+++++|.... .++.|+.
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI 113 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHH
Confidence 35668999999999999999999999999999998776644322111 12347788775421 1344444
Q ss_pred ccchhccCCCHHHH-----HHHHHHHHHHc--CcccccceeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDV-----KVRVESAWSAV--NLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~-----~~~i~~~l~~~--~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+...... ...+. ...+.++++.+ ++.+.+......+||+++|++
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv 165 (271)
T 2ixe_A 114 AYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV 165 (271)
T ss_dssp HTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH
T ss_pred hhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH
Confidence 33221111 10221 12345667777 676666666677888888876
No 70
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.93 E-value=3e-09 Score=90.78 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=63.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+|+|||||+|+|++.....++..+++|.......+...+..+.++||||+..... . .....+.+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~-~-~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY-V-NHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE-E-CHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc-c-hHHHHHHHHHH
Confidence 346789999999999999999999987655677777777666555555566889999999864221 1 11222222222
Q ss_pred HHHcCcccccceeeecCC
Q 026174 217 WSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~ 234 (242)
+. -.-.+.+++|+|...
T Consensus 112 l~-~~~~~~il~V~~~d~ 128 (262)
T 3def_A 112 LV-NRTIDVLLYVDRLDV 128 (262)
T ss_dssp TT-TCEECEEEEEEESSC
T ss_pred Hh-cCCCCEEEEEEcCCC
Confidence 21 124678888876644
No 71
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.93 E-value=4.1e-09 Score=87.53 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
....|+++|.+|||||||+|.|++.... ....+++|+.............+.++||||....... +..... ...+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~--~~~~~ 103 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFE-NRNTIE--MTTIT 103 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGG-GCCHHH--HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccc-hhhhHH--HHHHH
Confidence 4578999999999999999999997654 4556667766555444444457889999998532110 000000 11112
Q ss_pred HHcCcccccceeeecCCccc
Q 026174 218 SAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~~ 237 (242)
......+.+++|+|+.++.+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s 123 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCG 123 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTS
T ss_pred HhhccccEEEEEEecccccC
Confidence 23466789999999987643
No 72
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.92 E-value=6.1e-11 Score=102.00 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=73.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcc-------cceEEE-EEeeCCc-eeEEeeccccc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-------THEVLG-VMTKADT-QICIFDTPGLM 198 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t-------~~~~~~-~~~~~~~-~~~liDtpG~~ 198 (242)
.++++++.++ |..++|+|+||+|||||+++|+|.. +..|...... ....++ +++|... ..++.|+..+.
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~ 97 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLY 97 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHh
Confidence 4667899999 9999999999999999999999998 7655432111 022356 6665432 22333333332
Q ss_pred hhccCCCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 199 LNKSGYSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
...... ...++.++++.+++. +........+||+++|++
T Consensus 98 ~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 98 EELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp HHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred hhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 211111 135678899999998 877777888999998876
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=3.2e-10 Score=97.79 Aligned_cols=61 Identities=20% Similarity=0.407 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecC-------CCCcccceEEEEEeeCCc---eeEEeeccccchh
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT---QICIFDTPGLMLN 200 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~-------~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~ 200 (242)
.+++++|+||+|||||+|+|+|...+..|. .+.+......++++|... .++++|+||+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 368999999999999999999977665442 223333456777776543 6789999999654
No 74
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.90 E-value=2.4e-10 Score=105.69 Aligned_cols=96 Identities=27% Similarity=0.393 Sum_probs=61.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHH-HHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~i~~ 215 (242)
..+..|+++|++|||||||+|.|++.....++..+++|+......+...+..+.++||||+.... ... ...+..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~-----~~ve~~gi~~ 296 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS-----DQVEKIGVER 296 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch-----hHHHHHHHHH
Confidence 46778999999999999999999997665577778888775433344455678899999985321 111 122455
Q ss_pred HHHHcCcccccceeeecCCccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.+..+.-+|.+++|+|.+++.+
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~ 318 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWT 318 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSC
T ss_pred HhhhhhcCCEEEEEeccCCCCC
Confidence 6667788899999999987654
No 75
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=6.1e-10 Score=101.06 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=47.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee---------------------C---CceeEEeeccc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------A---DTQICIFDTPG 196 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~liDtpG 196 (242)
.++++|.||||||||+|+|++.. ..++..|++|+....+.+.. . ...+.++||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 57999999999999999999987 55778888888777665321 1 12578999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
+....+ ..+....+++..+.-+|.+++|+|+..+
T Consensus 81 ~~~~a~-----~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAH-----EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchh-----hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864211 1111223445566788999999999875
No 76
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.90 E-value=1.4e-10 Score=101.89 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=67.1
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|..++|+|+||+|||||+++|+|...+..|..... ..+..+++++|.... .++.|+..
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~ 149 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR 149 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHH
Confidence 566799999999999999999999999999999877665432211 122457888886432 24445444
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccc-----------eeeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLM-----------VVFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll-----------~v~D~~~g~~~~~i~ 242 (242)
+.... ... ..+.++++.+++.+.+. -....++|+++|.++
T Consensus 150 ~~~~~--~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRva 200 (306)
T 3nh6_A 150 YGRVT--AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA 200 (306)
T ss_dssp TTSTT--CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred hhccc--CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHH
Confidence 32211 122 23444455555444332 222457888888763
No 77
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.89 E-value=4.9e-09 Score=89.76 Aligned_cols=94 Identities=23% Similarity=0.321 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
...+++++|.+|+|||||+|.|++.....++..+++|.......+...+..+.++||||+..... .. ......+...+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~-~~-~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY-IN-DMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE-EC-HHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc-ch-HHHHHHHHHHh
Confidence 35678999999999999999999987655666777776655544545555789999999864211 11 12222222211
Q ss_pred HHcCcccccceeeecCC
Q 026174 218 SAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~ 234 (242)
...-.|.+++|+|...
T Consensus 116 -~~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 116 -LDKTIDVLLYVDRLDA 131 (270)
T ss_dssp -TTCEECEEEEEEESSC
T ss_pred -hcCCCCEEEEEEeCCC
Confidence 1234788999977643
No 78
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=6.4e-09 Score=82.97 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+++++|++|||||||+|.|++... ..+..+++|.....+.+...+..+.++||||..... .....+ .....++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~--~~~~~~~~ 82 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-ANSIDE--IIARDYII 82 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS-SSSHHH--HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc-cccHHH--HHHHHHHh
Confidence 45789999999999999999998653 345567777665555555555678899999985321 111111 11122222
Q ss_pred HcCcccccceeeecCC
Q 026174 219 AVNLFEVLMVVFDVHR 234 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~ 234 (242)
. ..++.+++++|..+
T Consensus 83 ~-~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 83 N-EKPDLVVNIVDATA 97 (188)
T ss_dssp H-HCCSEEEEEEEGGG
T ss_pred c-cCCCEEEEEecchh
Confidence 1 23678888999865
No 79
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.88 E-value=1.8e-10 Score=98.01 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=68.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|..... ..+..+++++|.... .++.|+.
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 103 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence 3567899999999999999999999999999999877664432111 112347788775421 1344444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i 241 (242)
.+.. .... ...+.++++.+++.+++-. ....+||+++|.+
T Consensus 104 ~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 104 SLAN--PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp TTTC--TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred hccC--CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 3321 1112 2345566666666554332 2356888888765
No 80
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.88 E-value=4e-10 Score=95.58 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=69.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC----------cccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN----------TTTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~----------~t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|.... ...+..+++++|.... .++.|+.
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 366789999999999999999999999999999987665443211 1112345677765421 2344444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i 241 (242)
.+... .... ...+.++++.+++.+++-.. ...+||+++|++
T Consensus 97 ~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv 148 (243)
T 1mv5_A 97 TYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148 (243)
T ss_dssp TSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH
Confidence 33211 1112 23466778888887654322 346888888765
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.85 E-value=2.8e-10 Score=103.03 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=72.6
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C---c-----ccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N---T-----TTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~---~-----t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|... ..|... + . ..+..+++++|.... .++.|+.
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl 114 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL 114 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHH
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHh
Confidence 3566899999999999999999999999999999865 433221 1 1 112457888876432 2333443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeec-----------CCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDV-----------HRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~-----------~~g~~~~~i~ 242 (242)
.+.. ... .+++.++++.+++.+++...... +||+++|.++
T Consensus 115 ~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 115 DPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp CTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred hhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 3211 111 34577889999998776666555 8889888763
No 82
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.85 E-value=2.4e-09 Score=97.74 Aligned_cols=95 Identities=27% Similarity=0.392 Sum_probs=72.3
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhcc---CCC
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKS---GYS 205 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~---~~~ 205 (242)
.++++.++.+..++|+|+||||||||||+|++... .+...+.+|.....+++.+.+ ..+.++|+||+..... ++.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh
Confidence 45678888999999999999999999999999854 567778888888888877764 5788999999863211 122
Q ss_pred HHHHHHHHHHHHHHcCcccccceeeecC
Q 026174 206 HKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (242)
Q Consensus 206 ~~~~~~~i~~~l~~~~l~d~ll~v~D~~ 233 (242)
. .++....-++.+++++|++
T Consensus 227 ~--------~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 227 L--------EFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp H--------HHHHHHTSSSEEEEEEETT
T ss_pred H--------HHHHHHHHHHhhhEEeCCc
Confidence 1 2334456678899999985
No 83
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=93.58 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=49.4
Q ss_pred hhhhhhhccCCcE--EEEEcCCCCchhHHHHHHhCCccee--ec-CCCCcccceEEEEEeeCCc---eeEEeeccccch
Q 026174 129 EEEVKEEDQKSVA--VGIIGAPNAGKSSIINYMVGTKVAA--VS-RKTNTTTHEVLGVMTKADT---QICIFDTPGLML 199 (242)
Q Consensus 129 l~~~~~~~~~~~~--v~lvG~sgvGKSTLin~L~g~~~~~--~~-~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~ 199 (242)
++++++.+++|.. ++|+|+||+|||||+|+|+|..... .. ..++.++ ...+++++... .++++|+||+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~-~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL-QSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEE-EEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceE-eeEEEEeecCccccccchhhhhhhhh
Confidence 5667899999999 9999999999999999999975321 11 1233333 35667776543 678999999864
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=92.43 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=44.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... .+++++|..
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~ 75 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQA 75 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSC
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCC
Confidence 36678999999999999999999999999999999877665443222 367777753
No 85
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.78 E-value=4.9e-09 Score=93.29 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC-ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
-..|+|+|.+|||||||||.|++... .+++.+++|.....+.+...+ ..+.++||||+........ .....++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~-----~l~~~fl 231 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGV-----GLGHQFL 231 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTT-----TTHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccc-----hhHHHHH
Confidence 34688999999999999999998653 467778888877777665443 5788999999865322111 1123345
Q ss_pred HHcCcccccceeeecCC
Q 026174 218 SAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~ 234 (242)
..+.-++.+++|+|+++
T Consensus 232 ~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 232 RHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHHHHCCEEEEEEESSC
T ss_pred HHHHhccEEEEEEECCc
Confidence 55666899999999976
No 86
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.77 E-value=9.2e-10 Score=92.57 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=44.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+..|...... .+++++|..
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~ 78 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFS 78 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCC
Confidence 46678999999999999999999999999999998877655432222 367777653
No 87
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.76 E-value=4.7e-09 Score=94.29 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=63.1
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC---------------------CceeEEeeccccch
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---------------------DTQICIFDTPGLML 199 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~~~liDtpG~~~ 199 (242)
.++++|.||||||||+|+|++.. +.++..+++|...+.++.... +..+.++||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 47899999999999999999864 446677788877666664321 23578999999974
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
..+... ....+++..+.-+|.+++|+|+++.
T Consensus 82 ~a~~~~-----~lg~~fl~~ir~ad~ii~VvD~~~~ 112 (368)
T 2dby_A 82 GAHKGE-----GLGNQFLAHIREVAAIAHVLRCFPD 112 (368)
T ss_dssp CCCSSS-----CTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred cccccc-----hHHHHHHHHHHhCCEEEEEEECCCC
Confidence 322110 0113455566778999999999764
No 88
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.71 E-value=2.2e-08 Score=94.91 Aligned_cols=64 Identities=28% Similarity=0.360 Sum_probs=43.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEe-------eCCceeEEeeccccchhcc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-------KADTQICIFDTPGLMLNKS 202 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~liDtpG~~~~~~ 202 (242)
.+...|+|+|.||||||||||.|+|..... ..++++++.+.+... ..+..+.++||||+.....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK 106 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccc
Confidence 345678999999999999999999976421 333444333322211 1345789999999975443
No 89
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.71 E-value=2.5e-09 Score=91.60 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=64.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++|+|+||+|||||+++|+|...+ .|... +. ..+..+++++|.... .++.|+.
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 35678999999999999999999999999999998654 33221 11 112346778775421 2344443
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccc-----------eeeecCCccccccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLM-----------VVFDVHRHLTRFVI 241 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll-----------~v~D~~~g~~~~~i 241 (242)
.+.. .... ...+.++++.+++.+.+. .....+||+++|.+
T Consensus 114 ~~~~--~~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 114 LYGK--LDAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HTTC--TTCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred hccC--CCCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 3311 1112 233455666666544321 12346788888765
No 90
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.71 E-value=2e-08 Score=79.09 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=53.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
+....|+++|.+|||||||+|.+.+.... ....++.+.......+...+..+.++||||..... ...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~----------- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT-TMR----------- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS-CSC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH-HHH-----------
Confidence 45678899999999999999999986543 22233333332222233444577899999974211 110
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+..+|.+++|+|+.++
T Consensus 73 ~~~~~~~d~~i~v~d~~~~ 91 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDG 91 (178)
T ss_dssp CSSCCCCCEEEEEEETTCC
T ss_pred HHHHhhCCEEEEEEECCCC
Confidence 0123446677777777654
No 91
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.71 E-value=4.7e-08 Score=77.80 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=55.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCH---HHHHHHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVESAW 217 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~i~~~l 217 (242)
+++++|.+|||||||+|.+.+... ..+..++++........ ..+.++||||+... ...+. +.........+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~----~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW----KNHKIIDMPGFGFM-MGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE----TTEEEEECCCBSCC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec----CCEEEEECCCcccc-ccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999998753 34555666665443222 26789999997432 12222 22223334444
Q ss_pred HH-cCcccccceeeecCC
Q 026174 218 SA-VNLFEVLMVVFDVHR 234 (242)
Q Consensus 218 ~~-~~l~d~ll~v~D~~~ 234 (242)
.. ....++++.++|..+
T Consensus 77 ~~~~~~~~~v~~v~d~~s 94 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKA 94 (190)
T ss_dssp HHHGGGCCEEEEEEETTH
T ss_pred HhhhccCCEEEEEEcchh
Confidence 44 555667777777654
No 92
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.70 E-value=3.8e-09 Score=100.18 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=69.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtp 195 (242)
.++++++.+++|..++++|+||+|||||++.|+|...+..|..... ..+...++++|+... .++.|+.
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 437 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNI 437 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHH
Confidence 3566899999999999999999999999999999877665432111 122357788876421 1334444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i~ 242 (242)
.+... ...+ ++++.++++.+++.+.+... ...+||+++|+++
T Consensus 438 ~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 438 AYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490 (582)
T ss_pred hccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHH
Confidence 33210 1112 24466677777766544332 2468888888763
No 93
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.69 E-value=6.6e-08 Score=93.53 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.2
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT 173 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~ 173 (242)
...+..|+++|.+|+|||||+|+|+|.....++..+++
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 45678899999999999999999999876555555555
No 94
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.67 E-value=4.3e-08 Score=85.10 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
....|+++|.+|+|||||+|+|+|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 345789999999999999999999764
No 95
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.67 E-value=3.4e-09 Score=92.30 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=46.1
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
..++++++.+++|..++|+|+||+|||||+++|+|...+..|...... .+++++|..
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~ 108 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS 108 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC
Confidence 457888999999999999999999999999999999877666543222 367777753
No 96
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.67 E-value=3.2e-08 Score=77.62 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...|+++|.+|||||||+|.+.+.........++.+..... +...+. .+.++||||.... .. ..+ .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~~~----~~----~~~--~ 71 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERT--LTVDGEDTTLVVVDTWEAEKL----DK----SWS--Q 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEE--EEETTEEEEEEEECCC---------------CHH--H
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEE--EEECCEEEEEEEEecCCCCcc----ch----hhh--H
Confidence 45789999999999999999998765544444444432222 222222 5679999997421 00 000 0
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
-..+..++.+++|+|+.+.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADR 90 (175)
T ss_dssp HHTTTSCSEEEEEEETTCH
T ss_pred HhhcccCCEEEEEEECCCH
Confidence 1233456778888887654
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.66 E-value=6.6e-08 Score=76.98 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=52.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
++..+++++|.+|||||||+|.+.+....... + |.......+......+.++||||...... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 79 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTIS--P--TLGFNIKTLEHRGFKLNIWDVGGQKSLRS------------YW 79 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCC--C--CSSEEEEEEEETTEEEEEEEECCSHHHHT------------TG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCccc--c--cCccceEEEEECCEEEEEEECCCCHhHHH------------HH
Confidence 45678999999999999999999986622121 1 11122222333455788999999732100 11
Q ss_pred HHHcCcccccceeeecCCcc
Q 026174 217 WSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+.-+|.+++|+|+.++.
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~ 99 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQ 99 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGG
T ss_pred HHHhcCCCEEEEEEECcCHH
Confidence 12345567788888876653
No 98
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.66 E-value=1e-07 Score=81.89 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
....|+++|.+|||||||+|+|+|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 446789999999999999999999764
No 99
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=3.5e-08 Score=77.86 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=49.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....++++|.+|||||||+|.+.+.........+..+.......+...+. .+.++||||..... .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~------------~ 75 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR------------S 75 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH------------H
Confidence 345678999999999999999998865432222233333222222222322 56899999953110 0
Q ss_pred HHHHHcCcccccceeeecCCc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g 235 (242)
.....+.-.+.+++|+|+.++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~ 96 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNK 96 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCH
T ss_pred HHHHHccCCCEEEEEEECCCH
Confidence 111223445677777777654
No 100
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.65 E-value=1.5e-08 Score=89.88 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.0
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..++++++...++..++|+|+||+|||||+|.|+|
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45778899999999999999999999999999985
No 101
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.64 E-value=3.2e-09 Score=100.64 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=66.5
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|..++++|+||+|||||+++|.|...+..|..... ..+...++++|+... .++.|+..
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~ 436 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL 436 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHG
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHh
Confidence 456789999999999999999999999999999877765533211 112357888876431 13445443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i 241 (242)
+..+ ..+. +.+.++++..++.+.+... ...+||+++|++
T Consensus 437 ~~~~--~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 437 LGRP--TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp GGCS--SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred cCCC--CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 3211 1122 3344555555554433221 235788888876
No 102
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.64 E-value=1.7e-08 Score=78.64 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCCceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 198 (242)
..+++++|.+|||||||+|.+.+..... .....+.+.......+......+.++||||..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 4578999999999999999998865321 22222333222111111112356899999974
No 103
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.63 E-value=4e-09 Score=100.22 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=68.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|..++++|+||+|||||+++|+|...+..|... +. ..+...++++|+... .++.|+..
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 439 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHh
Confidence 4567999999999999999999999999999998776654321 11 112357888876431 13444443
Q ss_pred cchhcc-CCCHHHHHHHHHHHHHHcCcccccc-------eee----ecCCccccccc
Q 026174 197 LMLNKS-GYSHKDVKVRVESAWSAVNLFEVLM-------VVF----DVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~-~~~~~~~~~~i~~~l~~~~l~d~ll-------~v~----D~~~g~~~~~i 241 (242)
+..+.. ..+ ++++.++++.+++.+.+. -.+ ..+||+++|++
T Consensus 440 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 440 YGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp TTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred hcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 322110 112 344667777777654332 222 55788888875
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.63 E-value=7.1e-08 Score=84.24 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee-CCceeEEeeccccchhccCCCHHHHHHHH-HHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRV-ESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~i-~~~ 216 (242)
+.+++++|.+|||||||+|.+.+......+..++.|.....+.+.. ....+.++||||.... ..... ...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF--------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH--------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH--------hhhhhhhHH
Confidence 5678999999999999999998875554556677777765554432 3346789999996421 01111 112
Q ss_pred HHHcCcccccceeeecCCcc
Q 026174 217 WSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~ 236 (242)
-..+.-++.+++|+|+.++.
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~ 94 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTE 94 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSC
T ss_pred HHHhccCCEEEEEEECCChh
Confidence 22345678999999988764
No 105
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.62 E-value=3.8e-09 Score=100.14 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=68.3
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|..++++|+||+|||||++.|+|...+..|... + ...+...++++|+... .++.|+..
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 4567899999999999999999999999999998776654321 1 1112357888876431 13444444
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccce-----------eeecCCccccccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMV-----------VFDVHRHLTRFVI 241 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~-----------v~D~~~g~~~~~i 241 (242)
+... ...+ ++++.++++.+++.+.+.. ....+||+++|++
T Consensus 439 ~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 439 YART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp TTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred ccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 3210 1122 2345566666666544322 2346888888875
No 106
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.62 E-value=3.8e-08 Score=76.62 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 198 (242)
.+++++|.+|||||||+|.+.+.........++++..... .+......+.++|+||..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCc
Confidence 4689999999999999999998766555555555543222 111112356799999964
No 107
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.61 E-value=1.2e-07 Score=75.63 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=54.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
.....++++|.+|||||||+|.+.+..........+.+. ..+...+..+.++||||.... .. ..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~---------~~---~~ 77 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKI---------RP---YW 77 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGGG---------HH---HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHHH---------HH---HH
Confidence 345778999999999999999999875443333333221 123333457789999996421 00 12
Q ss_pred HHHcCcccccceeeecCCcc
Q 026174 217 WSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+.-++.+++|+|+.++.
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~ 97 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRK 97 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGG
T ss_pred HHHhCCCCEEEEEEECcCHH
Confidence 23445678888888887653
No 108
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.60 E-value=1.4e-07 Score=74.14 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
...+|+++|.+|||||||+|.|.+.... ....+..+.......+...+ ..+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 3467899999999999999999987544 22233333333333333333 356899999963
No 109
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.60 E-value=1.2e-07 Score=84.34 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
...|+++|.+|||||||+|+|+|...
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 45788999999999999999999764
No 110
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.60 E-value=8.2e-09 Score=98.40 Aligned_cols=99 Identities=8% Similarity=0.094 Sum_probs=68.1
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCce---eEEeeccccchhccCCCHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ---ICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
+.+|.+++|+|+||+|||||+++|+|...+..|.... ...+++++|.... .++.+....... ........
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~~~~~~~~tv~e~~~~~~~----~~~~~~~~ 451 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQYIKAEYEGTVYELLSKIDS----SKLNSNFY 451 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSSCCCCCSSBHHHHHHHHHH----HHHHCHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecCccCCCCCcHHHHHHhhhc----cCCCHHHH
Confidence 4789999999999999999999999988776665432 2357788775321 122222111000 00011345
Q ss_pred HHHHHHHcCcccccceeeecCCccccccc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.++++.+++.+.....+..+||+++|++
T Consensus 452 ~~~~l~~~~l~~~~~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 452 KTELLKPLGIIDLYDRNVEDLSGGELQRV 480 (607)
T ss_dssp HHHTHHHHTCTTTTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 77889999999888888889999999876
No 111
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.59 E-value=1.3e-07 Score=75.82 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=52.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
++..+|+++|.+|||||||+|.|.+..... ... .|.......+......+.++||||.... .. ..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~---~~ 84 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMI--PTVGFNMRKITKGNVTIKLWDIGGQPRF---------RS---MW 84 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCC--CCCSEEEEEEEETTEEEEEEEECCSHHH---------HT---TH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccC--CCCceeEEEEEeCCEEEEEEECCCCHhH---------HH---HH
Confidence 446779999999999999999998754431 111 1222222223344457789999996321 11 11
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.+.
T Consensus 85 ~~~~~~~d~ii~v~D~~~~ 103 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQ 103 (188)
T ss_dssp HHHHTTCSEEEEEEETTCG
T ss_pred HHHHccCCEEEEEEECCCH
Confidence 2234567888889998764
No 112
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.59 E-value=1.3e-07 Score=75.59 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
...+|+++|.+|||||||+|.|++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 356789999999999999999998643
No 113
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.59 E-value=1.3e-07 Score=75.92 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=53.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+|||||||+|.|++.....+...+ |.......+......+.++||||...... ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------~~ 80 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRG------------LW 80 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGG------------GG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHH------------HH
Confidence 45667899999999999999999987654322112 11122222334445788999999742110 01
Q ss_pred HHHcCcccccceeeecCCcc
Q 026174 217 WSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+.-+|.+++|+|+.++.
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~ 100 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHL 100 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGG
T ss_pred HHHHhcCCEEEEEEECCcHH
Confidence 12355678999999988764
No 114
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.58 E-value=1.5e-07 Score=83.72 Aligned_cols=24 Identities=33% Similarity=0.742 Sum_probs=22.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.|+++|.+|||||||+|+|+|...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 889999999999999999999653
No 115
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.58 E-value=4.3e-09 Score=99.95 Aligned_cols=108 Identities=9% Similarity=0.007 Sum_probs=65.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|+.++++|+||+|||||+++|+|...+..|... +. ..+...++++|+... .++.|+..
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 438 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK 438 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHT
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHh
Confidence 4567899999999999999999999999999998776654321 11 123457888886532 24455544
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCc-----------ccccceeeecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNL-----------FEVLMVVFDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l-----------~d~ll~v~D~~~g~~~~~i~ 242 (242)
+..+ ..+.++ +.++++..++ ...+--....++|+++|+++
T Consensus 439 ~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 439 WGRE--DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp TTCS--SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred ccCC--CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 3221 122222 2233333333 33333333468888888763
No 116
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.58 E-value=1.3e-07 Score=73.68 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+++++|.+|||||||+|.+.+....... + |.......+......+.++||||...... ..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 68 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTI--P--TIGFNVETVTYKNLKFQVWDLGGLTSIRP------------YW 68 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC--C--CSSEEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcC--C--cCccceEEEEECCEEEEEEECCCChhhhH------------HH
Confidence 44677899999999999999999875543221 1 11222222334456788999999742110 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 69 ~~~~~~~d~ii~v~d~~~~ 87 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDR 87 (171)
T ss_dssp GGGCTTCSEEEEEEETTCC
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1234456788888887765
No 117
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.57 E-value=1.1e-07 Score=73.89 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=51.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
+++++|.+|||||||+|.+.+...... .| |.......+......+.++||||.... .. .....+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~---~~~~~~ 65 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKI---------RP---LWRHYF 65 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEECSSCEEEEEECCCCGGG---------HH---HHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEEECCEEEEEEEcCCChhh---------HH---HHHHHh
Confidence 578999999999999999987543321 22 221222223334457889999997321 01 112245
Q ss_pred CcccccceeeecCCcc
Q 026174 221 NLFEVLMVVFDVHRHL 236 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~ 236 (242)
.-+|.+++|+|+.++.
T Consensus 66 ~~~d~~i~v~d~~~~~ 81 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRE 81 (164)
T ss_dssp TTCSEEEEEEETTCGG
T ss_pred ccCCEEEEEEECCCHH
Confidence 6778889999987753
No 118
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.57 E-value=7.7e-08 Score=74.42 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
..+++++|.+|||||||+|.+.+....... ..++.......+...+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--CCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999875433211 11221111111222222 47899999953
No 119
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.57 E-value=3.4e-09 Score=100.85 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=65.6
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCCce--eEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKADTQ--ICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~~~--~~liDtpG 196 (242)
++++++.+++|..++++|+||+|||||+++|+|...+..|..... ..+...++++|+... .++.|+..
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 450 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLK 450 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHh
Confidence 556789999999999999999999999999999877765533211 112357888876431 13444443
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i~ 242 (242)
+..+ ..+.+ .+.++++.+++.+.+... ...+||+++|+++
T Consensus 451 ~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 451 YGNP--GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp SSST--TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred cCCC--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 3211 11222 234444444444333222 1357888888763
No 120
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.56 E-value=6.7e-08 Score=74.86 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..+++++|.+|+|||||+|.+.+..... ....++.......+...+. .+.++||||.... ......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~- 71 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------AAIRDN- 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---------HHHHHH-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC--CCCCCcceEEEEEEEECCEEEEEEEEECCCcchh---------HHHHHH-
Confidence 3578999999999999999998765321 1222222222121222222 5689999995311 011111
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
.+...+.+++|+|+.+.
T Consensus 72 --~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 72 --YFRSGEGFLCVFSITEM 88 (168)
T ss_dssp --HHHHCSEEEEEEETTCH
T ss_pred --HhhcCCEEEEEEECCCH
Confidence 22346677777777654
No 121
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.56 E-value=1.6e-07 Score=74.55 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceE-EEEEeeCC-----------ceeEEeeccccchhccCCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKAD-----------TQICIFDTPGLMLNKSGYS 205 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~liDtpG~~~~~~~~~ 205 (242)
...+|+++|.+|||||||+|.|.+..... ...+..+.... ...+...+ ..+.++||||....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF----- 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence 34678999999999999999998754321 11111111111 11122221 25789999997321
Q ss_pred HHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 206 ~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.......+.-+|.+++|+|+.++.
T Consensus 84 -------~~~~~~~~~~~d~~i~v~d~~~~~ 107 (195)
T 3bc1_A 84 -------RSLTTAFFRDAMGFLLLFDLTNEQ 107 (195)
T ss_dssp -------HHHHHHTTTTCSEEEEEEETTCHH
T ss_pred -------HHHHHHHHcCCCEEEEEEECCCHH
Confidence 011233456678888888887653
No 122
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.55 E-value=1.8e-07 Score=75.93 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=50.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....|+++|.+|||||||+|.|.+.... ....+..+.......+...+ ..+.++||||..... ..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~---------- 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-TI---------- 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-CC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-HH----------
Confidence 44678999999999999999999876542 22223333332222233333 357899999964221 11
Q ss_pred HHHHHcCcccccceeeecCCc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 86 -~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 86 -TTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp -CHHHHTTCSEEEEEEETTCH
T ss_pred -HHHHhccCCEEEEEEECCCH
Confidence 11223456677777776654
No 123
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.55 E-value=8.5e-08 Score=74.53 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=47.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..++++|.+|||||||+|.+.+..... .....+.+.. ...+...+ ..+.++||||..... . ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~-~-----------~~ 69 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL--TQRVTINEHTVKFEIWDTAGQERFA-S-----------LA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGGGG-G-----------GH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEECCCChhhh-h-----------hh
Confidence 468899999999999999998765331 1112222221 11122222 257899999963210 0 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp HHHHTTCSEEEEEEETTCH
T ss_pred hhhhccCcEEEEEEecCCh
Confidence 1233455777777777654
No 124
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.55 E-value=1.2e-07 Score=86.96 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=58.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCccee------------------------------ecCCCCcccceEEEEEeeCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~ 186 (242)
+...+++++|.+|+|||||+|.|++..... ....++.|.......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456789999999999999999995531110 01113445544433344445
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.++||||.. .....+...+..+|++++|+|+..|.
T Consensus 95 ~~~~iiDTPGh~------------~f~~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 95 KHFTILDAPGHK------------SFVPNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred eEEEEEECCChH------------HHHHHHHhhHhhCCEEEEEEECCCCc
Confidence 578999999953 12334455566789999999998875
No 125
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=1.2e-07 Score=73.73 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..+|+++|.+|||||||+|.+.+...... ..+.... .....+.... ..+.++||||.... .. ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~~~~~Dt~G~~~~------~~---~~~~- 70 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVED-TYRQVISCDKSICTLQITDTTGSHQF------PA---MQRL- 70 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCE-EEEEEEEETTEEEEEEEEECCSCSSC------HH---HHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccc-cEEEEEEECCEEEEEEEEECCCchhh------HH---HHHH-
Confidence 45789999999999999999998543211 1111111 1111122222 25689999996421 11 1111
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
.+...+.+++|+|++++
T Consensus 71 --~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 71 --SISKGHAFILVYSITSR 87 (172)
T ss_dssp --HHHHCSEEEEEEETTCH
T ss_pred --hcccCCEEEEEEECcCH
Confidence 22336788888887754
No 126
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.4e-07 Score=75.25 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=52.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+|||||||+|.+.+..........+.+. ..+...+..+.++||||...... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~------------~~ 77 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS------------SW 77 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC----CG------------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHhHHH------------HH
Confidence 456789999999999999999999765443333222221 11223445778999999732100 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 78 ~~~~~~~d~ii~v~d~~~~ 96 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDR 96 (187)
T ss_dssp HHHHTTCCEEEEEEETTCT
T ss_pred HHHhcCCCEEEEEEeCCCH
Confidence 1223557888888898775
No 127
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.54 E-value=6.4e-08 Score=76.79 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
..+|+++|.+|||||||+|.|.+.... .....++.......+...+. .+.++||||..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence 457899999999999999999876532 22223332222222323333 35689999964
No 128
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=8.6e-08 Score=77.08 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=51.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcce-eecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....+|+++|.+|||||||+|.|.+.... ......+.+.......+......+.++||||..... ..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~----------- 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-SL----------- 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-GG-----------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-hh-----------
Confidence 34567899999999999999999876532 223333333322211111122367899999963211 00
Q ss_pred HHHHcCcccccceeeecCCcc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~ 236 (242)
....+.-++.+++|+|+.++.
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQD 109 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTH
T ss_pred hHHhhccCCEEEEEEeCCCHH
Confidence 111234457777777776543
No 129
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.53 E-value=1.6e-07 Score=72.95 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeec-CCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
...++++|.+|||||||+|.+.+....... ...+.+.......+......+.++||||..... . ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~-----------~~~ 73 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-S-----------LAP 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-G-----------GHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-h-----------hhH
Confidence 456899999999999999999875433211 122222211111111112356899999964210 0 011
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.++
T Consensus 74 ~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp HHHTTCSEEEEEEETTCH
T ss_pred HhccCCCEEEEEEECCCH
Confidence 223445677777776654
No 130
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.53 E-value=1.6e-07 Score=74.60 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=52.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+|||||||+|.+.+..........+.+.. .+...+..+.++||||..... . ..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~-~-----------~~ 82 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLR-S-----------SW 82 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGGGT-C-----------GG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHhHH-H-----------HH
Confidence 3466789999999999999999998766444444443321 122344577899999974211 0 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 83 ~~~~~~~d~ii~v~D~~~~ 101 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDR 101 (181)
T ss_dssp GGGGTTCCEEEEEEETTCT
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1234556778888887665
No 131
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.53 E-value=9.9e-08 Score=76.48 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=49.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecC-CCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
.....|+++|.+|||||||+|.|.+........ ..+.+.......+......+.++||||..... . .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~-----------~ 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-A-----------I 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-T-----------T
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-h-----------h
Confidence 445678999999999999999998865432221 11222111111111112356899999974211 0 0
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~ 110 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKH 110 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCH
T ss_pred hHHHhccCCEEEEEEECCCH
Confidence 11223456777777777654
No 132
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.53 E-value=1e-07 Score=77.03 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceee-cCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
..+|+++|.+|||||||+|.|.+...... ....+.+... ..+...+ ..+.++||||.... . ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~------~------~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV--KTIYRNDKRIKLQIWDTAGLERY------R------TI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGG------H------HH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--EEEEECCeEEEEEEEECCCchhh------c------ch
Confidence 45789999999999999999998654321 1112222211 1122222 36789999997321 0 01
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCH
T ss_pred HHHhhcCCCEEEEEEECcCH
Confidence 12234456777777777654
No 133
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.53 E-value=9.1e-08 Score=82.00 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecC-------CCCcccceEEEEEeeCCc--eeEEeeccccch
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT--QICIFDTPGLML 199 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~ 199 (242)
.+|+++|.+|+|||||+|.|.+........ .+..+.......+...+. .+.++||||+..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 568999999999999999998866543322 122222222222222222 678999999853
No 134
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.52 E-value=8.9e-08 Score=76.83 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=51.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....+|+++|.+|||||||+|.+.+..... .....+.+.......+......+.++||||... .. ..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~---~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER---------YR---TI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH---------CH---HH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH---------HH---HH
Confidence 445678999999999999999998754221 111122222222211222233578999999421 11 11
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNE 108 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCH
T ss_pred HHHHHccCCEEEEEEECcCH
Confidence 22334557788888887654
No 135
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.52 E-value=1.7e-07 Score=74.40 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=52.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....|+++|.+|||||||+|.+.+..... ...+..+.......+...+ ..+.++||||.... . .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~------~ 74 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF------R------S 74 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG------H------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH------H------H
Confidence 345678999999999999999998765432 1122222222222222222 25689999995321 0 1
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.....+.-++.+++|+|+.++.
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~ 96 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRE 96 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHH
T ss_pred HHHHHHhcCCEEEEEEECcCHH
Confidence 1223455677888888877653
No 136
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.52 E-value=6.3e-08 Score=78.33 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=47.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
.....|+++|.+|||||||+|.+.+..... .....+.+.... .+...+ ..+.++||||.... . ...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~------~---~~~ 94 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK--TLIVDGERTVLQLWDTAGQERF------R---SIA 94 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE--EEEETTEEEEEEEEECTTCTTC------H---HHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE--EEEECCEEEEEEEEECCCCcch------h---hhH
Confidence 446789999999999999999998765321 222222222211 122222 25789999995311 1 111
Q ss_pred HHHHHHcCcccccceeeecCCcc
Q 026174 214 ESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+.-+|.+++|+|+.++.
T Consensus 95 ---~~~~~~~d~iilv~d~~~~~ 114 (199)
T 2p5s_A 95 ---KSYFRKADGVLLLYDVTCEK 114 (199)
T ss_dssp ---HHHHHHCSEEEEEEETTCHH
T ss_pred ---HHHHhhCCEEEEEEECCChH
Confidence 12233467888888887653
No 137
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.52 E-value=2.7e-07 Score=73.74 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.|.+..... ...+..+.......+...+ ..+.++||||..... . .
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~-----------~ 81 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-T-----------I 81 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-T-----------T
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-h-----------h
Confidence 34678999999999999999999765432 2223333333222233333 257899999963211 1 0
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-+|.+++|+|+.++
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~ 101 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQ 101 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCH
T ss_pred HHHHHhhCCEEEEEEECcCH
Confidence 11233456777777777654
No 138
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.52 E-value=1.7e-07 Score=73.68 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...++++|.+|||||||+|.+.+..... ...+..+.......+...+ -.+.++||||.... . ...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~------~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF------R------SLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG------H------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh------h------hhH
Confidence 4578999999999999999998754321 1122222222122222232 26789999995311 0 011
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~ 92 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDS 92 (177)
T ss_dssp GGGGTTCSEEEEEEETTCH
T ss_pred HHHHhcCCEEEEEEECcCH
Confidence 1234456677777777654
No 139
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.51 E-value=1.2e-07 Score=75.02 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=49.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....+|+++|.+|||||||+|.+.+..........+.. ...+...+..+.++||||..... .. .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~-~~-----------~ 79 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLGGQTSIR-PY-----------W 79 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC----EEEEEETTEEEEEEEEC----CC-TT-----------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc----eEEEEECCEEEEEEECCCCHhHH-HH-----------H
Confidence 45778999999999999999999976554333333322 12233334577899999974211 00 0
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 80 ~~~~~~~d~ii~v~d~~~~ 98 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDK 98 (183)
T ss_dssp GGTTTTEEEEEEEEETTCT
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1123445677777777654
No 140
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.51 E-value=1.5e-07 Score=76.37 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHH
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV 211 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 211 (242)
++...+ ...++++|.+|||||||+|.+.+..........+.+ ...+...+..+.++||||..... ..
T Consensus 19 ~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~-~~------- 85 (198)
T 1f6b_A 19 LGLYKK-TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQAR-RV------- 85 (198)
T ss_dssp HTCTTC-CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----C-CG-------
T ss_pred hhccCC-CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhH-HH-------
Confidence 344433 346789999999999999999986543332222222 12233344577899999963211 00
Q ss_pred HHHHHHHHcCcccccceeeecCCc
Q 026174 212 RVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 212 ~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 86 ----~~~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 86 ----WKNYLPAINGIVFLVDCADH 105 (198)
T ss_dssp ----GGGGGGGCSEEEEEEETTCG
T ss_pred ----HHHHHhcCCEEEEEEECCCH
Confidence 01123346777777787665
No 141
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.51 E-value=9.7e-09 Score=96.59 Aligned_cols=99 Identities=8% Similarity=0.093 Sum_probs=67.0
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCce---eEEeeccccchhccCCCHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ---ICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
+.+|.+++|+|+||+|||||+++|+|...+..|.... ...+++++|.... .++.+....... ... .....
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~~~tv~~~~~~~~~-~~~---~~~~~ 381 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADYEGTVYELLSKIDA-SKL---NSNFY 381 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCCSSBHHHHHHHHHH-HHH---TCHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCCCCcHHHHHHhhhc-cCC---CHHHH
Confidence 4689999999999999999999999988776665432 2356778775321 122221110000 000 01245
Q ss_pred HHHHHHHcCcccccceeeecCCccccccc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+.++++.+++.+.....+..+||+++|++
T Consensus 382 ~~~~l~~~~l~~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 382 KTELLKPLGIIDLYDREVNELSGGELQRV 410 (538)
T ss_dssp HHHTTTTTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 67788899998887788888999999876
No 142
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.51 E-value=1.9e-07 Score=75.23 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
...++++|.+|||||||+|.+.+..........+ .....+...+..+.++||||...... . ...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~-~-----------~~~ 86 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQARR-L-----------WKD 86 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCS----CEEEEEEETTEEEEEEECCCSGGGTT-S-----------GGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCC----CCeEEEEECCEEEEEEECCCCHHHHH-H-----------HHH
Confidence 4578899999999999999999865433222222 22233444445778999999743211 0 011
Q ss_pred HcCcccccceeeecCCcc
Q 026174 219 AVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g~ 236 (242)
.+.-++.+++|+|+.++.
T Consensus 87 ~~~~~d~~i~v~d~~~~~ 104 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPE 104 (190)
T ss_dssp GCTTCCEEEEEEETTCGG
T ss_pred HHhcCCEEEEEEECCChH
Confidence 234567777788877653
No 143
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.50 E-value=7.8e-08 Score=75.51 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceee-cCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....++++|.+|||||||+|.|.+...... ....+.+.. ...+.... ..+.++||||.... . ..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~----~-----~~-- 80 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQERF----R-----AV-- 80 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE--EEEEEETTEEEEEEEEECTTGGGT----C-----HH--
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCeEEEEEEEECCCChHh----h-----hh--
Confidence 346789999999999999999987654321 111122211 11122222 25689999995321 0 11
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
....+.-++.+++|+|+.++.
T Consensus 81 -~~~~~~~~d~~i~v~d~~~~~ 101 (179)
T 1z0f_A 81 -TRSYYRGAAGALMVYDITRRS 101 (179)
T ss_dssp -HHHHHHTCSEEEEEEETTCHH
T ss_pred -HHHHhccCCEEEEEEeCcCHH
Confidence 112233457888888877653
No 144
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.50 E-value=1.3e-08 Score=104.66 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=71.9
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC----------CCcccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------TNTTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~----------~~~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|.+++|||++|+|||||+++|.|...+..|.. .....+..+++++|++. ..++.|+..
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~ 1174 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII 1174 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHS
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHh
Confidence 566799999999999999999999999999999876654422 22233456888988754 335667765
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccc-------ceee----ecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVL-------MVVF----DVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-------l~v~----D~~~g~~~~~i~ 242 (242)
+.......+.+ .+.++++..++.+.+ .-.+ ..+|||++|.||
T Consensus 1175 ~gld~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQria 1227 (1321)
T 4f4c_A 1175 YGLDPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIA 1227 (1321)
T ss_dssp SSSCTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHH
T ss_pred ccCCCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHH
Confidence 43222223333 355555566554432 2222 247888888775
No 145
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.50 E-value=1.3e-07 Score=73.37 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
.+++++|.+|||||||+|.+.+..... ....++.......+.... ..+.++||||..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChH
Confidence 568999999999999999998754321 111121111111122222 256899999964
No 146
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.50 E-value=3.1e-07 Score=71.26 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..+++++|.+|||||||+|.|.+..... ...+..+.......+...+ ..+.++||||..... .. .
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~-----------~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD-AI-----------T 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT-CC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH-HH-----------H
Confidence 4578999999999999999998764332 1122222222222222222 257899999964211 11 1
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~ 90 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDR 90 (168)
T ss_dssp HHHHTTCCEEEEEEETTCH
T ss_pred HHHhcCCCEEEEEEECcCH
Confidence 1123345677777776654
No 147
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.49 E-value=2e-07 Score=75.21 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=49.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
.+..+|+++|.+|||||||+|.+.+....... + |.......+......+.++||||..... . ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~--------~~--- 90 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNICFTVWDVGGQDKIR-P--------LW--- 90 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----C-T--------TH---
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccC--C--cCceeEEEEEECCEEEEEEECCCCHhHH-H--------HH---
Confidence 45678999999999999999999876543221 1 2222222233344577899999973210 0 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 91 ~~~~~~~d~iilv~D~~~~ 109 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDR 109 (192)
T ss_dssp HHHHHTCCEEEEEEETTCG
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1123456788888888765
No 148
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.49 E-value=2e-07 Score=72.48 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=46.4
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
.+++++|.+|||||||+|.+.+..... ...+..+.......+...+ -.+.++||||.... ... ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~-----------~~ 70 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF-RTI-----------TT 70 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGT-SCC-----------CH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh-hhh-----------HH
Confidence 568999999999999999999765421 1222222222222232222 25689999996421 111 11
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.++
T Consensus 71 ~~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDE 88 (170)
T ss_dssp HHHTTEEEEEEEEETTCH
T ss_pred HHhccCCEEEEEEECCCH
Confidence 123445677777776654
No 149
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.48 E-value=3.7e-08 Score=87.76 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+.+..++|+|+||||||||+|.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999999986
No 150
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.48 E-value=1.5e-07 Score=74.03 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC---CceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....|+++|.+|||||||+|.+.+..... ...+..+.......+... ...+.++||||..... .
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------~ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ------------S 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh------------h
Confidence 35678999999999999999998764321 111222222222222222 1356899999952110 0
Q ss_pred HHHHHcCcccccceeeecCCc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g 235 (242)
.....+.-.+.+++|+|+.++
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~ 94 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNA 94 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCH
T ss_pred hhHHHhhcCCEEEEEEECCCh
Confidence 111233455677777776654
No 151
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=2e-07 Score=74.41 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=49.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
.+..+|+++|.+|||||||+|.|.+..... .....+.+.. ...+.... ..+.++||||..... ..
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~-~~--------- 80 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFK--VKTISVDGNKAKLAIWDTAGQERFR-TL--------- 80 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECSSGGGC-CS---------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEE--EEEEEECCeEEEEEEEeCCCchhhh-hh---------
Confidence 345678999999999999999998764321 1111122221 11122222 356899999964211 10
Q ss_pred HHHHHHcCcccccceeeecCCc
Q 026174 214 ESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 81 --~~~~~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 81 --TPSYYRGAQGVILVYDVTRR 100 (195)
T ss_dssp --HHHHHTTCCEEEEEEETTCH
T ss_pred --hHHHhccCCEEEEEEECcCH
Confidence 11233456778888887654
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.7e-07 Score=75.43 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=47.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....|+++|.+|||||||+|.+.+........ + +........+...+ ..+.++||||... . ....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~----~~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-P-TLESTYRHQATIDDEVVSMEILDTAGQED------T----IQRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-T-TCCEEEEEEEEETTEEEEEEEEECCCCCC------C----HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC-C-CCCceEEEEEEECCEEEEEEEEECCCCCc------c----cchh
Confidence 345778999999999999999998865432111 1 11111111122222 3568999999743 0 0011
Q ss_pred HHHHHcCcccccceeeecCCc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+++.
T Consensus 94 ---~~~~~~d~iilv~D~~~~ 111 (196)
T 2atv_A 94 ---GHMRWGEGFVLVYDITDR 111 (196)
T ss_dssp ---HHHHHCSEEEEEEETTCH
T ss_pred ---hhhccCCEEEEEEECcCH
Confidence 122334677777777653
No 153
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.47 E-value=2.2e-07 Score=74.39 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=39.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 198 (242)
....+|+++|.+|||||||+|.|.+........ ..|.......+...+..+.++||||..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccceeEEEEEECCEEEEEEECCCCH
Confidence 346778999999999999999999875221111 122222333343444578899999963
No 154
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.47 E-value=8.7e-08 Score=87.54 Aligned_cols=90 Identities=31% Similarity=0.333 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc-eeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
....++++|.+|+|||||+|.|++.....++..+++|.......+...+. .+.++||||+.... .... ..+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~-~l~~----~~~~~~ 107 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG-ELGR----LRVEKA 107 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCC-TTCC----CCHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc-chhH----HHHHHH
Confidence 34678999999999999999999987655667777777655444443333 78899999986321 1111 123345
Q ss_pred HHHcCcccccceeeec
Q 026174 217 WSAVNLFEVLMVVFDV 232 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~ 232 (242)
...+..+|.+++|+|+
T Consensus 108 ~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 108 RRVFYRADCGILVTDS 123 (423)
T ss_dssp HHHHTSCSEEEEECSS
T ss_pred HHHHhcCCEEEEEEeC
Confidence 5566778999999998
No 155
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.47 E-value=4.2e-07 Score=72.64 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+....... .+..+.......+...+ ..+.++||||.... . ...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~--~~~ 86 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERF---------R--KSM 86 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH---------H--TTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhh---------h--hhh
Confidence 3467899999999999999999875443211 12222122222222222 25789999995311 0 001
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 87 ~~~~~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNM 106 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCH
T ss_pred hHHHhcCCCEEEEEEECcCH
Confidence 12234557888888887654
No 156
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.46 E-value=2.7e-07 Score=72.32 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...++++|.+|||||||+|.+.+..... ...+..+.......+...+ ..+.++||||...... . ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-~--------~~-- 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-L--------IP-- 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-G--------SH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-H--------HH--
Confidence 3578999999999999999998754332 1222233222222232222 2578999999642111 0 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.++
T Consensus 82 -~~~~~~d~~i~v~d~~~~ 99 (179)
T 2y8e_A 82 -SYIRDSTVAVVVYDITNT 99 (179)
T ss_dssp -HHHHTCSEEEEEEETTCH
T ss_pred -HHhcCCCEEEEEEECCCH
Confidence 112345677777777654
No 157
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.46 E-value=2.6e-07 Score=71.99 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
.+++++|.+|||||||+|.+.+.........+ .+.......+...+ -.+.++||||..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 62 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQG 62 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCcc
Confidence 36889999999999999999875543322222 22222222222332 255789999974
No 158
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.46 E-value=3.8e-07 Score=72.78 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
++..+++++|.+|||||||+|.+.+..........+ .....+......+.++||||........
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~~------------ 83 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRPYW------------ 83 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT----CCEEEEEETTEEEEEEEECCSSSSCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHHHH------------
Confidence 456789999999999999999998765443322222 1122233344578899999974211100
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-+|.+++|+|+.++
T Consensus 84 ~~~~~~~d~ii~v~d~~~~ 102 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDR 102 (189)
T ss_dssp SSSSTTCCEEEEEEETTCC
T ss_pred HHHhhcCCEEEEEEeCCCH
Confidence 0123345677777776654
No 159
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.46 E-value=2.9e-07 Score=74.05 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...|+++|.+|||||||+|.|.+...... ..+..+.......+...+ -.+.++||||.... ... .
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~---~ 92 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------NSI---T 92 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---------HHH---H
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---------HHH---H
Confidence 45789999999999999999998654321 112222222222222222 25689999996321 111 1
Q ss_pred HHHcCcccccceeeecCCcc
Q 026174 217 WSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g~ 236 (242)
...+.-++.+++|+|+.++.
T Consensus 93 ~~~~~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKE 112 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHH
T ss_pred HHHhcCCCEEEEEEECcCHH
Confidence 12233467888888887653
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.46 E-value=8.7e-08 Score=91.40 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=60.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeec------------------------------CCCCcccceEEEEEeeCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS------------------------------RKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 186 (242)
++..+|+++|.+|+|||||+|.|++....... ..+|.|.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 55778999999999999999999875321110 013555554444444445
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
..+.++||||... ....+...+..+|++++|+|+..|
T Consensus 245 ~~~~iiDTPG~e~------------f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 245 ANFTIVDAPGHRD------------FVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CEEEEEECCSSSC------------HHHHHTTTSSCCSEEEEEEECSHH
T ss_pred ceEEEEECCCCcc------------cHHHHHHHHhhcCceEEEEECCCC
Confidence 6789999999732 134455567778999999999875
No 161
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.45 E-value=2.2e-07 Score=74.17 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
..+|+++|.+|||||||+|.|.+..... ....++.......+...+. .+.++||||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4578999999999999999998764321 2222222222222222222 46799999953
No 162
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.45 E-value=3.1e-07 Score=86.60 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcce--eecCCCCccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTT 175 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~~~~~~~~t~ 175 (242)
.....|+++|.+|+|||||+|.|+|.... .++..+.+++
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 35578999999999999999999998754 3555555543
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.45 E-value=1.5e-07 Score=87.28 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=58.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcc------------------------------eeecCCCCcccceEEEEEeeCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~ 186 (242)
++..+++++|.+|+|||||+|.|++... .......+.|.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4567899999999999999999975310 0011223555554444444445
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
..+.++||||... ....+...+..+|.+++|+|+..|
T Consensus 111 ~~~~iiDTPG~~~------------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 111 ANFTIVDAPGHRD------------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp CEEEEECCCCCGG------------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred ceEEEEECCCcHH------------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 6789999999832 133455567778999999999886
No 164
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.45 E-value=3.8e-07 Score=74.47 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=50.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC------------CceeEEeeccccchhccCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------DTQICIFDTPGLMLNKSGY 204 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~------------~~~~~liDtpG~~~~~~~~ 204 (242)
....+|+++|.+|||||||+|.|.+..... ...+..+.......+... ...+.++||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 335678999999999999999999864321 111111111111111111 2357899999942
Q ss_pred CHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 205 ~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
... ......+.-++.+++|+|+.++.
T Consensus 96 ---~~~---~~~~~~~~~~d~iilV~D~~~~~ 121 (217)
T 2f7s_A 96 ---RFR---SLTTAFFRDAMGFLLMFDLTSQQ 121 (217)
T ss_dssp ---HHH---HHHHHHHTTCCEEEEEEETTCHH
T ss_pred ---hHH---hHHHHHhcCCCEEEEEEECcCHH
Confidence 111 11233456678889999987653
No 165
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2.5e-07 Score=74.10 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....|+++|.+|||||||+|.|.+...... ..+... ......+.... ..+.++||||.... .. ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~------~~---~~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDT-YIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQF------PA---MQRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCT-TSCCCC-EEEEEEEEETTEEEEEEEEECCGGGSC------HH---HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCc-ccCccc-cceeEEEEECCEEEEEEEEeCCChHHh------HH---HHHH
Confidence 456789999999999999999987543211 111111 11111122222 25689999996421 11 1111
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
.+...+.+++|+|+.++
T Consensus 76 ---~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 76 ---SISKGHAFILVFSVTSK 92 (199)
T ss_dssp ---HHHHCSEEEEEEETTCH
T ss_pred ---hhccCCEEEEEEECcCH
Confidence 12335788888887654
No 166
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.45 E-value=2.2e-07 Score=72.32 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
..+++++|.+|||||||+|.+.+..... ...+..+.......+...+. .+.++||||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4578999999999999999998764321 11222222222222222222 56788999953
No 167
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.45 E-value=2.5e-07 Score=72.68 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC---ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....++++|.+|||||||+|.+.+..... ...+..+.......+...+ ..+.++||||..... ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-~~---------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-KM---------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-TT----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-ch----------
Confidence 34678999999999999999998764321 1112222222222222222 367899999964211 00
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
....+.-+|.+++|+|+.++.
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~ 93 (178)
T 2hxs_A 73 -LDKYIYGAQGVLLVYDITNYQ 93 (178)
T ss_dssp -HHHHHTTCSEEEEEEETTCHH
T ss_pred -hhHHHhhCCEEEEEEECCCHH
Confidence 111244567788888876643
No 168
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.44 E-value=2.1e-07 Score=73.39 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..+++++|.+|||||||+|.+.+....... .+..+.......+...+ ..+.++||||..... . ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~-----------~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-S-----------LA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-G-----------GT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-h-----------hh
Confidence 457899999999999999999876543221 11111111111122222 367899999963211 0 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 79 ~~~~~~~d~~i~v~d~~~~ 97 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQ 97 (181)
T ss_dssp HHHHTTCSEEEEEEETTCH
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1223445677777776654
No 169
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.44 E-value=6.2e-07 Score=72.37 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....|+++|.+|||||||+|.|.+..... ...+..+.......+...+ ..+.++||||..... ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~---------- 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-SLG---------- 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-CSC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-HhH----------
Confidence 35678999999999999999998865331 1122222222222222222 257899999964211 110
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-.|.+++|+|+.++
T Consensus 75 -~~~~~~~d~~i~v~d~~~~ 93 (207)
T 1vg8_A 75 -VAFYRGADCCVLVFDVTAP 93 (207)
T ss_dssp -CGGGTTCSEEEEEEETTCH
T ss_pred -HHHHhCCcEEEEEEECCCH
Confidence 1123345667777776554
No 170
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.43 E-value=3.3e-07 Score=74.26 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
...|+++|.+|||||||+|.|.+..... ...+..+.......+...+. .+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 4578999999999999999998865432 22222222222222323322 57899999964
No 171
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.43 E-value=3e-08 Score=93.21 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=68.1
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc---eeEEeeccccchhccCCCHHHHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT---QICIFDTPGLMLNKSGYSHKDVK 210 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~ 210 (242)
+.+.+|.+++|+|+||+|||||+++|+|...+..|...... ..+++++|... ..++.+........ ... ...
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~--~~~ 363 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNYDGTVQQYLENASKD-ALS--TSS 363 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCCSSBHHHHHHHHCSS-TTC--TTS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhcccccCCCHHHHHHHhhhh-ccc--hhH
Confidence 34679999999999999999999999998877666543222 23456655321 12223322221100 000 112
Q ss_pred HHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 211 VRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 211 ~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
..+.++++.+++.+.....+..+||+++|++
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv 394 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNVNDLSGGELQKL 394 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBGGGCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 3467888899999888888899999999876
No 172
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.43 E-value=2.2e-07 Score=71.56 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
.+++++|.+|||||||+|.+.+...... ...++.......+...+. .+.++||||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE--CDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc--cCCccceEEEEEEEECCEEEEEEEEECCCch
Confidence 4688999999999999999987643321 112222111111222222 46789999963
No 173
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.43 E-value=2.4e-07 Score=74.08 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceee-cCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~-~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
...|+++|.+|||||||+|.|.+...... ....+.+.. ...+.... ..+.++||||..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEE--EEEEEETTEEEEEEEEECCSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEE--EEEEEECCeEEEEEEEeCCCcH
Confidence 46789999999999999999987654321 112222221 11122222 356899999963
No 174
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.43 E-value=3.2e-07 Score=72.41 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
+..+|+++|.+|||||||+|.|.+.... .....++.......+...+. .+.++||||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 3467899999999999999999876532 22222222222122222222 56899999963
No 175
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.42 E-value=2.1e-07 Score=75.29 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=36.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee--CCceeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~liDtpG~~ 198 (242)
.+..+|+++|.+|||||||+|.|.+...... ...++.......+.. ....+.++||||..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4567789999999999999999998654321 112222111111221 22356899999964
No 176
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.42 E-value=6e-07 Score=72.26 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
....|+++|.+|||||||+|.+.+.... .....++.......+...+. .+.++||||..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 3467899999999999999999876532 22222222222222222322 57899999963
No 177
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=74.92 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=46.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....+|+++|.+|||||||+|.|.+...... ..+..+.......+...+ ..+.++||||.... ...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-~~~---------- 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF-RSV---------- 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHH-SCC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH-HHH----------
Confidence 3456789999999999999999998654321 112222222222222222 36789999996321 111
Q ss_pred HHHHHcCcccccceeeecCCc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.++
T Consensus 91 -~~~~~~~~d~~i~v~d~~~~ 110 (200)
T 2o52_A 91 -TRSYYRGAAGALLVYDITSR 110 (200)
T ss_dssp -CHHHHTTCSEEEEEEETTCH
T ss_pred -HHHHhccCCEEEEEEECcCH
Confidence 11223456777777777654
No 178
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.7e-08 Score=92.58 Aligned_cols=105 Identities=6% Similarity=-0.035 Sum_probs=67.2
Q ss_pred hhhhhhccCC-----cEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCce---eEEeeccccchhc
Q 026174 130 EEVKEEDQKS-----VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ---ICIFDTPGLMLNK 201 (242)
Q Consensus 130 ~~~~~~~~~~-----~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~liDtpG~~~~~ 201 (242)
+++++.+..| ++++|+|+||+|||||+++|+|...+..|... .....++++|.... .++.+... ...
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~~~tv~e~~~--~~~ 438 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKFPGTVRQLFF--KKI 438 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCCCSBHHHHHH--HHC
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccCCccHHHHHH--HHh
Confidence 3455555555 78999999999999999999999877655421 12345666654211 11112111 011
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.... .....+.++++.+++.+.....+..+||+++|++
T Consensus 439 ~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv 476 (608)
T 3j16_B 439 RGQF--LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRV 476 (608)
T ss_dssp SSTT--TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHH
T ss_pred hccc--ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 1110 0123466788999999988888899999999876
No 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.41 E-value=4.1e-07 Score=74.19 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+.... ....+..+.......+...+ -.+.++||||.... . ..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~---~~ 91 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF---------R---SI 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------H---HH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH---------H---HH
Confidence 3467899999999999999999875432 11122222222222222222 25689999996311 0 01
Q ss_pred HHHHcCcccccceeeecCCcc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~ 236 (242)
....+.-++.+++|+|+.++.
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEE 112 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHH
T ss_pred HHHHHhcCCEEEEEEECCCHH
Confidence 122345567777788876543
No 180
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.40 E-value=1.6e-07 Score=75.76 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-ceEEEEEeeCC----ceeEEeeccccchhccCCCHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKAD----TQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-~~~~~~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
....|+++|.+|||||||+|.|.+...........++. ......+...+ ..+.++||||.... .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~-- 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY---------K-- 87 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH---------H--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH---------H--
Confidence 45678999999999999999998862211222222221 11111222222 25789999997311 0
Q ss_pred HHHHHHHcCcccccceeeecCCcc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
......+.-++.+++|+|+.++.
T Consensus 88 -~~~~~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 88 -EQISQYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp -HHHSTTCCCCCEEEEEEETTCHH
T ss_pred -HHHHHHHhhCcEEEEEEECCCHH
Confidence 11222345567888888876653
No 181
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.40 E-value=1.4e-07 Score=77.48 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=51.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHH-hCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYM-VGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L-~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....+|+++|.+|||||||+|.+ .+..........+.+.......+......+.++||||.... .....
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~--------- 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF-GGLRD--------- 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT-SCCCH---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH-hHHHH---------
Confidence 34567899999999999999994 44333334455555554333222222235689999996421 11111
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.++
T Consensus 83 --~~~~~~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 83 --GYYIQAQCAIIMFDVTSR 100 (221)
T ss_dssp --HHHTTCCEEEEEEETTCH
T ss_pred --HHHhcCCEEEEEEECCCH
Confidence 122345677777776654
No 182
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.40 E-value=4.5e-07 Score=71.17 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
....++++|.+|||||||+|.|.+.... .....++.......+...+ ..+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCch
Confidence 3467899999999999999999886432 2223333222222232332 256789999964
No 183
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.40 E-value=2.7e-07 Score=75.63 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....|+++|.+|||||||+|.+.+...... ...++.......+...+. .+.++||||..... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~--- 98 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPES--YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD---------RL--- 98 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEEECCEEEEEEEEECCCchhhh---------HH---
Confidence 356789999999999999999998654321 111221111111222222 56899999953110 00
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
.-..+.-++.+++|+|+.++
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~ 118 (214)
T 2j1l_A 99 RPLFYPDASVLLLCFDVTSP 118 (214)
T ss_dssp ------CEEEEEEEEETTCH
T ss_pred HHHHhccCCEEEEEEECcCH
Confidence 01123456777777777654
No 184
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.40 E-value=2.3e-07 Score=73.19 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
+..+++++|.+|||||||+|.+.+..........+.. ....+...+ -.+.++||||..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ---YKKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE---EEEEEEETTEEEEEEEEECSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee---EEEEEEECCEEEEEEEEECCCCc
Confidence 3467899999999999999999886543322111111 111122222 246789999964
No 185
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.40 E-value=3.3e-07 Score=85.00 Aligned_cols=88 Identities=18% Similarity=0.329 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcce------eecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVA------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
..+++++|.+|+|||||+|.|++.... .....++.|.......+...+..+.++||||.. ..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~------------~~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA------------DL 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH------------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH------------HH
Confidence 567899999999999999999986511 122233444433222233344578899999962 23
Q ss_pred HHHHHHHcCcccccceeeecCCcccc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.......+..+|.+++|+|+..|.+.
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~ 112 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKT 112 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCH
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccH
Confidence 45566777889999999999886543
No 186
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.39 E-value=5.5e-08 Score=99.86 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=66.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--Cc--------ccceEEEEEeeCCc--eeEEeecc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NT--------TTHEVLGVMTKADT--QICIFDTP 195 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~~--------t~~~~~~~~~~~~~--~~~liDtp 195 (242)
.++++++.+++|++++|+|+||+|||||+++|.|...+..|... +. ..+..+++++|+.. ..++.|+.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi 1127 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHH
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHH
Confidence 46778889999999999999999999999999998776644321 11 12345788888652 12344444
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCccccccee-----------eecCCcccccccC
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVV-----------FDVHRHLTRFVIC 242 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v-----------~D~~~g~~~~~i~ 242 (242)
.+..+....+.+++ .++++..++.+.+... ...+||+++|++|
T Consensus 1128 ~~~~~~~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1128 AYGDNSRVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp TCCCSSCCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred hccCCCCCCCHHHH----HHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 33222222233333 3333444433322211 1358888888764
No 187
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.38 E-value=3.6e-07 Score=72.34 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=36.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
.+..+|+++|.+|||||||+|.+.+..... ....++...........+. .+.++||||..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 345678999999999999999998754321 1122222112222223333 34579999964
No 188
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.38 E-value=3.4e-07 Score=72.33 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...++++|.+|||||||+|.+.+.... .....++.......+...+. .+.++||||..... .. .
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~-----------~ 70 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-RL-----------R 70 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-TT-----------G
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH-HH-----------H
Confidence 457899999999999999999865432 11112222111111222222 45699999974211 00 0
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+..++.+++|+|+.++
T Consensus 71 ~~~~~~~d~~i~v~d~~~~ 89 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSP 89 (186)
T ss_dssp GGGCTTCSEEEEEEETTCH
T ss_pred HHhccCCcEEEEEEECCCh
Confidence 1134456777888887664
No 189
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.38 E-value=5.6e-07 Score=81.32 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCccee---------------ecCCCCcccceEEEEEeeCCceeEEeeccccchhccC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA---------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 203 (242)
..+++++|.+|+|||||++.|++..... .....+.|.......+......+.++||||...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 4578999999999999999998731100 001123333322212223345788999999631
Q ss_pred CCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
....+...+..+|.+++|+|+..|.+.
T Consensus 79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~ 105 (397)
T 1d2e_A 79 --------YVKNMITGTAPLDGCILVVAANDGPMP 105 (397)
T ss_dssp --------HHHHHHHTSSCCSEEEEEEETTTCSCH
T ss_pred --------HHHHHHhhHhhCCEEEEEEECCCCCCH
Confidence 123455567788999999999887543
No 190
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.37 E-value=4.6e-07 Score=74.03 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCccee-ecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~-~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
...+|+++|.+|||||||+|.|++..... .....+.+.... .+..... ..+.++||||..... ....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~-------- 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV-TFLDDQGNVIKFNVWDTAGQEKKA-VLKD-------- 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE-EEEBTTSCEEEEEEEEECSGGGTS-CCCH--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE-EEEeCCCcEEEEEEEecCCchhhc-hHHH--------
Confidence 35678999999999999999999754332 122222222111 1111111 246899999974221 1111
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.-+|.+++|+|+.++.
T Consensus 80 ---~~~~~~d~~i~v~d~~~~~ 98 (218)
T 4djt_A 80 ---VYYIGASGAILFFDVTSRI 98 (218)
T ss_dssp ---HHHTTCSEEEEEEETTCHH
T ss_pred ---HHhhcCCEEEEEEeCCCHH
Confidence 1133366777777776553
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5e-07 Score=72.19 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=48.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceee--cCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....++++|++|||||||+|.|.+...... +..+..+.. .....+.++||||....... . . .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~--~---~---~ 110 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYK--L---S---D 110 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCC--H---H---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHH--H---H---H
Confidence 4566889999999999999999998653221 111211111 12346789999998532111 0 1 1
Q ss_pred HHHHHcCcccccceeeecC
Q 026174 215 SAWSAVNLFEVLMVVFDVH 233 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~ 233 (242)
.+...+..++.+++|+|+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp HHHHHGGGEEEEEEEEETT
T ss_pred HHHhhcccCCEEEEEEECC
Confidence 1222345578899999987
No 192
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.36 E-value=7.9e-07 Score=71.59 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=35.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
.....|+++|.+|||||||+|.+.+.... .....++.......+...+. .+.++||||..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 45678899999999999999999986532 22223332222222333332 45699999974
No 193
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.35 E-value=1.2e-06 Score=71.34 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC---CceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
..+++++|.+|||||||+|.+.+...... .+.++.. ...+... ...+.++||||... ....+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~-- 71 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT--QTSITDS--SAIYKVNNNRGNSLTLIDLPGHES---------LRFQL-- 71 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCB--CCCCSCE--EEEEECSSTTCCEEEEEECCCCHH---------HHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCccee--eEEEEecCCCccEEEEEECCCChh---------HHHHH--
Confidence 56789999999999999999987653322 2222222 1122222 24678999999731 11100
Q ss_pred HHHHcCcccccceeeecCC
Q 026174 216 AWSAVNLFEVLMVVFDVHR 234 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~ 234 (242)
.-..+.-++.+++|+|+.+
T Consensus 72 ~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp HHHHGGGEEEEEEEEETTT
T ss_pred HHHHHhhCCEEEEEEECCC
Confidence 1112455778888888765
No 194
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.35 E-value=1.4e-07 Score=74.69 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
...|+++|.+|||||||+|.+.+.... ....+..+.......+...+ ..+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 467899999999999999999875432 11122222222222222222 357899999963
No 195
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.35 E-value=5.4e-07 Score=71.75 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
..+++++|.+|||||||+|.+.+..... ...+....... ..+.... ..+.++||||..... .. .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~-~~-----------~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYD-NV-----------R 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGT-TT-----------G
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEE-EEEEECCEEEEEEEEECCCChhhh-hh-----------H
Confidence 4578999999999999999998754321 11111111111 1122222 256899999964211 00 0
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 73 ~~~~~~~~~~i~v~d~~~~ 91 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRP 91 (184)
T ss_dssp GGGCTTCSEEEEEEETTCH
T ss_pred HhhcCCCcEEEEEEECCCH
Confidence 0123445667777776653
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.35 E-value=9.1e-07 Score=78.35 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=29.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+.++++....+..++++|+||+|||||+|.|++
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455677788899999999999999999999974
No 197
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.35 E-value=9.5e-07 Score=70.71 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.|.+........ +..+.......+...+ ..+.++||||.... ....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~---------- 87 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVNIDGKQIKLQIWDTAGQESF-RSIT---------- 87 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGT-SCCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCchhh-hhhH----------
Confidence 34578999999999999999998765432221 1122222222222222 25689999996421 1111
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.++
T Consensus 88 -~~~~~~~d~ii~v~d~~~~ 106 (191)
T 2a5j_A 88 -RSYYRGAAGALLVYDITRR 106 (191)
T ss_dssp -HHHHTTCSEEEEEEETTCH
T ss_pred -HHHhccCCEEEEEEECCCH
Confidence 1123345677777776553
No 198
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.33 E-value=4.5e-08 Score=100.48 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=44.7
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCc----------ccceEEEEEeeCC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT----------TTHEVLGVMTKAD 186 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~----------t~~~~~~~~~~~~ 186 (242)
++++++.+++|..++++|+||+|||||+++|.|...+..|..... ..+..+++++|+.
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 566799999999999999999999999999999877665533211 1223578888865
No 199
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=3.4e-07 Score=74.48 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=35.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
....+|+++|.+|||||||+|.|.+....... .+ ++.......+...+ ..+.++||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY-VP-TVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC-CC-cccceEEEEEEECCEEEEEEEEECCCcH
Confidence 44567899999999999999999886543211 11 11111111122222 256799999974
No 200
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.33 E-value=8.8e-07 Score=71.84 Aligned_cols=87 Identities=10% Similarity=0.172 Sum_probs=49.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....+|+++|.+|||||||+|.+.+..... ...+..+.......+...+ ..+.++||||.... . .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------~---~--- 93 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF------R---T--- 93 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG------H---H---
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH------H---H---
Confidence 345678999999999999999998754321 1111111112122222222 26789999996311 0 1
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.....+.-++.+++|+|+.++.
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~ 115 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRS 115 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHH
T ss_pred HHHHHHhhCCEEEEEEECCCHH
Confidence 1223345678888888876643
No 201
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.32 E-value=6.4e-07 Score=78.95 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHH
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~ 218 (242)
..+|+++|.+|||||||+|.|.+...... .+ |.......+......+.++||||.... ... ...
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~~-----------~~~ 228 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKI-RPL-----------WRH 228 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC------CCS-----------HHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhH-HHH-----------HHH
Confidence 34789999999999999999988764322 22 333333334444557889999994211 000 112
Q ss_pred HcCcccccceeeecCCc
Q 026174 219 AVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 219 ~~~l~d~ll~v~D~~~g 235 (242)
.+.-+|.+++|+|+.+.
T Consensus 229 ~~~~ad~vilV~D~~~~ 245 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDR 245 (329)
T ss_dssp HHTTEEEEEEEEETTCS
T ss_pred HhccCCEEEEEEECCch
Confidence 24457788888888654
No 202
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.32 E-value=9.1e-07 Score=69.83 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
..+|+++|.+|||||||+|.+.+.... .....++.......+...+ -.+.++||||..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCch
Confidence 457899999999999999999854422 2222222222222233333 245799999964
No 203
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.32 E-value=8.8e-07 Score=72.01 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=48.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
....+|+++|.+|||||||+|.+.+.... +....++.......+...+. .+.++||||..... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~----------- 93 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-R----------- 93 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-T-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-H-----------
Confidence 34678899999999999999999864332 22222322222222222333 34599999974211 0
Q ss_pred HHHHHcCcccccceeeecCCcc
Q 026174 215 SAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 215 ~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.....+.-++.+++|+|+.++.
T Consensus 94 ~~~~~~~~~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 94 LRPLSYPQTDVFLICFSLVSPA 115 (204)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH
T ss_pred HHHHHhccCCEEEEEEECCCHH
Confidence 0111344567777777776543
No 204
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.31 E-value=2.9e-07 Score=86.50 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=64.4
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC-----------CCccc----------ceEEEEEeeCCc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-----------TNTTT----------HEVLGVMTKADT 187 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~-----------~~~t~----------~~~~~~~~~~~~ 187 (242)
+.+++ .+.+|.+++|+|+||+|||||+++|+|...+..|.. .+... ....+++++.
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~-- 114 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY-- 114 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC--
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh--
Confidence 45567 789999999999999999999999999877655542 01100 0111222211
Q ss_pred eeEEeeccccchhccCCCHHH------HHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 188 QICIFDTPGLMLNKSGYSHKD------VKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~------~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
+............+ ...++.++++.+++.+.....+..+||+++|.+
T Consensus 115 -------~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv 167 (538)
T 1yqt_A 115 -------VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRV 167 (538)
T ss_dssp -------GGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHH
T ss_pred -------hhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHH
Confidence 11000000000111 123577899999998887778888999998875
No 205
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.31 E-value=6.9e-07 Score=71.31 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..++++|.+|||||||+|.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999863
No 206
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.31 E-value=1.3e-06 Score=71.40 Aligned_cols=81 Identities=16% Similarity=0.302 Sum_probs=50.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceee--cCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~ 214 (242)
.....++++|++|+|||||+|.|.+...... +..+..+.. .....+.++||||.... .....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~---------~~~~~ 73 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKL---------RYKLS 73 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGG---------THHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHH---------HHHHH
Confidence 3456789999999999999999988653221 111111111 12346789999998421 11122
Q ss_pred HHH-HHcCcccccceeeecC
Q 026174 215 SAW-SAVNLFEVLMVVFDVH 233 (242)
Q Consensus 215 ~~l-~~~~l~d~ll~v~D~~ 233 (242)
.++ .....++.+++|+|+.
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETT
T ss_pred HHHHhccccCCEEEEEEECC
Confidence 222 2334578899999987
No 207
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.31 E-value=2.5e-07 Score=86.79 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcce---------------eec------CCCCcccceEEEEEeeCCceeEEeeccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVS------RKTNTTTHEVLGVMTKADTQICIFDTPG 196 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~---------------~~~------~~~~~t~~~~~~~~~~~~~~~~liDtpG 196 (242)
....++|+|.+|+|||||+|.|++.... ... ...+.|.......+...+..+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4567899999999999999999621100 001 1134444444444545556789999999
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.... . ......+..+|.+++|+|+..|.+.
T Consensus 92 ~~df----~--------~~~~~~l~~aD~allVvDa~~g~~~ 121 (528)
T 3tr5_A 92 HADF----T--------EDTYRTLTAVDSALMVIDAAKGVEP 121 (528)
T ss_dssp STTC----C--------HHHHHGGGGCSEEEEEEETTTCSCH
T ss_pred chhH----H--------HHHHHHHHhCCEEEEEEeCCCCCCH
Confidence 7421 1 1345567778999999999887654
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.30 E-value=2.1e-06 Score=83.62 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.-..|+++|.+++|||||+|+|+|...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 345788999999999999999999754
No 209
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.30 E-value=7.9e-08 Score=98.94 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=69.0
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC--C--------cccceEEEEEeeCCc--eeEEeeccc
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--N--------TTTHEVLGVMTKADT--QICIFDTPG 196 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~--~--------~t~~~~~~~~~~~~~--~~~liDtpG 196 (242)
++++++.+++|..+++||++|+|||||+++|.|...+..|... + ...+..+++++|++. ..++.|+.-
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 4567999999999999999999999999999998776655332 1 122346888888754 346777776
Q ss_pred cchhccCCCHHHHHHHHHHHHHHcCccccc-------cee----eecCCcccccccC
Q 026174 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVL-------MVV----FDVHRHLTRFVIC 242 (242)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~~~l~~~~l~d~l-------l~v----~D~~~g~~~~~i~ 242 (242)
+..+ ..+.++ +.++++..++.+.+ .-+ --.++|+++|.|+
T Consensus 514 ~g~~--~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia 564 (1321)
T 4f4c_A 514 LGKE--GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564 (1321)
T ss_dssp TTCT--TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH
T ss_pred hhcc--cchHHH----HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH
Confidence 5432 223333 34444444432211 111 1247888887763
No 210
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.30 E-value=5.3e-07 Score=81.58 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcce--------ee--c------CCCCcccceEEEEEeeCCceeEEeeccccchhc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA--------AV--S------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~--------~~--~------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
...+++++|.+|+|||||+|.|++.... .. . ...+.|.......+......+.++||||....
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 4567999999999999999999873100 00 0 12344444332223333457889999997421
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
.......+..+|.+++|+|+..|..
T Consensus 89 -----------~~~~~~~~~~aD~~ilVvda~~g~~ 113 (405)
T 2c78_A 89 -----------IKNMITGAAQMDGAILVVSAADGPM 113 (405)
T ss_dssp -----------HHHHHHHHTTCSSEEEEEETTTCCC
T ss_pred -----------HHHHHHHHHHCCEEEEEEECCCCCc
Confidence 2334455677899999999988754
No 211
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.30 E-value=5.4e-07 Score=72.28 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
...+|+++|.+|||||||+|.+.+.... .....+........+...+. .+.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 4567899999999999999999886532 11112221111112222222 35799999953
No 212
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.30 E-value=2.2e-06 Score=69.07 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEe-eCCceeEEeeccccchhccCCCHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~ 216 (242)
...+++++|.+|||||||+|.+.+............+.......+. ...-.+.++||||.......... ..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------~~-- 90 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD------YE-- 90 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC------HH--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh------cc--
Confidence 4567899999999999999999886443221111122221111111 12246789999996421111000 01
Q ss_pred HHHcCcccccceeeecCCc
Q 026174 217 WSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 217 l~~~~l~d~ll~v~D~~~g 235 (242)
..+.-++.+++|+|+.++
T Consensus 91 -~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 91 -MIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp -HHHHTCSEEEEEEETTSC
T ss_pred -cccccCCEEEEEEECCCc
Confidence 122336888888888775
No 213
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.29 E-value=1.1e-07 Score=94.80 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=64.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC----ceeEEeeccccchhccC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD----TQICIFDTPGLMLNKSG 203 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~liDtpG~~~~~~~ 203 (242)
.++++++.+.+|.+++|+|+||+|||||+++|+|... ...+.. .....+++.|.. ..+++.|...+ ...+
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~-~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~ 523 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQ-EECRTVYVEHDIDGTHSDTSVLDFVFE--SGVG 523 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCT-TTSCEEETTCCCCCCCTTSBHHHHHHT--TCSS
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccc-cceeEEEEcccccccccCCcHHHHHHH--hhcC
Confidence 3566788899999999999999999999999995322 111110 111234444321 12233333321 1111
Q ss_pred CCHHHHHHHHHHHHHHcCcc-cccceeeecCCccccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLF-EVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~-d~ll~v~D~~~g~~~~~i 241 (242)
. ..++.++++.+++. +.....+..+||+++|++
T Consensus 524 ~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRv 557 (986)
T 2iw3_A 524 T-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL 557 (986)
T ss_dssp C-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHH
T ss_pred H-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHH
Confidence 1 46688899999994 566666778888888875
No 214
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.28 E-value=1.1e-06 Score=81.32 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
....++++|.+|||||||+|.|++...... ..|.......+...+..+.++||||..... . ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~----~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-----------~~~ 384 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKIR-P-----------LWR 384 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEESSSCEEEEEEECCCGGGS-G-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc----CCccceeEEEEEeCCEEEEEEECCCcHHHH-H-----------HHH
Confidence 456789999999999999999998763322 224444444444455578899999963211 0 012
Q ss_pred HHcCcccccceeeecCCc
Q 026174 218 SAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g 235 (242)
..+.-+|.+++|+|++++
T Consensus 385 ~~~~~ad~~i~V~D~~~~ 402 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADR 402 (497)
T ss_dssp GGGTTCCEEEEEEETTCG
T ss_pred HHhccCCEEEEEEECcch
Confidence 234567888888888765
No 215
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.28 E-value=4.6e-07 Score=72.64 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+.... .....++.......+.... -.+.++||||..... ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~----------- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR-NC----------- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC-CT-----------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcch-hH-----------
Confidence 3567899999999999999999876532 2222222211111122222 256789999964211 10
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
...+.-++.+++|+|+.+.
T Consensus 86 -~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 86 -ERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp -HHHHTTCSEEEEEEETTCH
T ss_pred -HHHHhhCCEEEEEEECCCH
Confidence 0123346777777777653
No 216
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.28 E-value=1.5e-07 Score=82.67 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCcee--EEeeccccchhccCCCHHHHHHHH
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI--CIFDTPGLMLNKSGYSHKDVKVRV 213 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~liDtpG~~~~~~~~~~~~~~~~i 213 (242)
.++|..++|+|+||+|||||++.|.|...+..+ . ..++++++++... .+.|..++.. ..+.+.......+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G----~---~~v~~v~qd~~~~~~t~~e~~~~~~-~~g~~~~~d~~~~ 158 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH----H---PRVDLVTTDGFLYPNAELQRRNLMH-RKGFPESYNRRAL 158 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT----C---CCEEEEEGGGGBCCHHHHHHTTCTT-CTTSGGGBCHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC----C---CeEEEEecCccCCcccHHHHHHHHH-hcCCChHHHHHHH
Confidence 688999999999999999999999997554211 1 2356666643211 2333333321 1122222223456
Q ss_pred HHHHHHcCcccccceeeecCCccccccc
Q 026174 214 ESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 214 ~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.++++.++ .+.....+...++++++.+
T Consensus 159 ~~~L~~l~-~~~~~~~~~~lS~G~~qRv 185 (312)
T 3aez_A 159 MRFVTSVK-SGSDYACAPVYSHLHYDII 185 (312)
T ss_dssp HHHHHHHH-TTCSCEEEEEEETTTTEEE
T ss_pred HHHHHHhC-CCcccCCcccCChhhhhhh
Confidence 67777776 4433234456667776654
No 217
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.28 E-value=5.8e-07 Score=71.18 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=36.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT 171 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~ 171 (242)
.++++++.+++|..++|+|+||+|||||++.|+|.. +..+...
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 456678999999999999999999999999999977 5555443
No 218
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.27 E-value=6.8e-07 Score=71.59 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
+..+|+++|.+|||||||+|.+++....... .+ |.......+...+. .+.++||+|..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SP--EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CT--TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC--CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 4567899999999999999998875433211 11 11111112223332 45679999963
No 219
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.27 E-value=8.5e-07 Score=79.56 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=52.0
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~ 220 (242)
.++++|.+|+|||||+|.|+ ..+.|.......+...+..+.++||||.... ...+...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f------------~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT------------LKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC------------HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH------------HHHHHHHH
Confidence 79999999999999999998 1233333333334344457899999997421 22344455
Q ss_pred CcccccceeeecCCccc
Q 026174 221 NLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 221 ~l~d~ll~v~D~~~g~~ 237 (242)
..+|.+++|+| ..|..
T Consensus 82 ~~aD~ailVvd-~~g~~ 97 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLD 97 (370)
T ss_dssp HTCSEEEEEEC-TTCCC
T ss_pred HHCCEEEEEEc-CCCCc
Confidence 77889999999 76654
No 220
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.27 E-value=1.4e-06 Score=70.47 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....|+++|.+|||||||+|.+.+.... ....+.++.......+...+. .+.++||+|..... .... ..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----~~~~---~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-----GWLR---DH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-----HHHH---HH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-----hhhH---HH
Confidence 3467899999999999999999874332 122333333333222333332 45688999974210 0011 11
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
.+.-++.+++|+|+.+.
T Consensus 93 ---~~~~~d~~ilv~d~~~~ 109 (195)
T 3cbq_A 93 ---CLQTGDAFLIVFSVTDR 109 (195)
T ss_dssp ---HHHHCSEEEEEEETTCH
T ss_pred ---hhccCCEEEEEEECCCH
Confidence 12345777888887654
No 221
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.27 E-value=9.9e-07 Score=72.07 Aligned_cols=84 Identities=11% Similarity=0.206 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+..... ...+...... ...+.... ..+.++||||..... ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-~~----------- 92 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYD-NV----------- 92 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGT-TT-----------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhh-HH-----------
Confidence 35678999999999999999998864421 1111111111 11122222 256899999964211 10
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-++.+++|+|+.+.
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRP 112 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCH
T ss_pred HHhhccCCCEEEEEEECCCH
Confidence 00123445677777776653
No 222
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.27 E-value=1.1e-06 Score=71.02 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
..+|+++|.+|||||||+|.+.+...... ..+..+...... +...+ ..+.++||||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIAD-IEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEE-EEETTEEEEEEEECCCCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEE-EEECCEEEEEEEEECCCch
Confidence 45789999999999999999987654321 112222221111 22222 256799999963
No 223
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.6e-06 Score=71.41 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
....|+++|.+|||||||+|.|.+........ +..+.......+...+ ..+.++||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 34678999999999999999998865432211 2222222222222222 257899999963
No 224
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.26 E-value=1e-06 Score=80.45 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCccee----------ecCC----------------------CCcccceEEEEEeeC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA----------VSRK----------------------TNTTTHEVLGVMTKA 185 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~----------~~~~----------------------~~~t~~~~~~~~~~~ 185 (242)
...+++++|.+|+|||||+|.|++..... .+.. .+.|......++...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 34678999999999999999997532100 0111 122333222223333
Q ss_pred CceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 186 ~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
...+.++||||.... .......+..+|.+++|+|+..|..
T Consensus 103 ~~~~~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~g~~ 142 (434)
T 1zun_B 103 KRKFIIADTPGHEQY------------TRNMATGASTCDLAIILVDARYGVQ 142 (434)
T ss_dssp SEEEEEEECCCSGGG------------HHHHHHHHTTCSEEEEEEETTTCSC
T ss_pred CceEEEEECCChHHH------------HHHHHHHHhhCCEEEEEEECCCCCc
Confidence 456889999996321 1223345678899999999988754
No 225
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.26 E-value=2e-06 Score=77.91 Aligned_cols=87 Identities=15% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeec--CCCCcccceEEEEEee---------------C--------CceeEEe
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTK---------------A--------DTQICIF 192 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------~~~~~li 192 (242)
+..+++++|..|+|||||++.|+|....... ..++.|.......... . ...+.++
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4567899999999999999999975432211 1234444322111110 0 1357899
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
||||.. .-...++..+...|.+++|+|+..|.
T Consensus 89 DtPGh~------------~f~~~~~~~~~~~D~~ilVvda~~g~ 120 (410)
T 1kk1_A 89 DAPGHE------------ALMTTMLAGASLMDGAILVIAANEPC 120 (410)
T ss_dssp ECSSHH------------HHHHHHHHCGGGCSEEEEEEETTSCS
T ss_pred ECCChH------------HHHHHHHhhhhhCCEEEEEEECCCCC
Confidence 999952 12345556667789999999998774
No 226
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.24 E-value=9.7e-08 Score=89.78 Aligned_cols=106 Identities=7% Similarity=0.103 Sum_probs=60.1
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCC-----------cccceEEEEEee-CCceeEEeeccccc---h
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-----------TTTHEVLGVMTK-ADTQICIFDTPGLM---L 199 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~-----------~t~~~~~~~~~~-~~~~~~liDtpG~~---~ 199 (242)
..++|..++|+|+||+|||||+++|+|...+..|.... ...... .+... ......+...+++. .
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY-NYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH-HHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH-HHHHHHhhcccchhhccchhhhhh
Confidence 34689999999999999999999999988776554310 000000 00000 00000011111111 0
Q ss_pred hccCCCHHH------HHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSGYSHKD------VKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~~~~~~------~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
........+ ....+.++++.+++.+.....+..+||+++|.+
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 000001111 123567889999999888888888999998875
No 227
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.24 E-value=3.2e-07 Score=76.10 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
.++++++.+++|..++|+|+||+|||||++.|+|..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467789999999999999999999999999999865
No 228
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.23 E-value=3.3e-07 Score=84.42 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCc--ce------------eec----------------CCCCcccceEEEEEeeCCce
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTK--VA------------AVS----------------RKTNTTTHEVLGVMTKADTQ 188 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~--~~------------~~~----------------~~~~~t~~~~~~~~~~~~~~ 188 (242)
..+++++|.+|+|||||+|.|++.. .. ..+ ...+.|.......+......
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4678999999999999999997531 00 000 01344443332333344457
Q ss_pred eEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 189 ~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
+.++||||... ....+...+..+|.+++|+|+..|.
T Consensus 87 ~~iiDtPGh~~------------f~~~~~~~~~~aD~~ilVvda~~g~ 122 (458)
T 1f60_A 87 VTVIDAPGHRD------------FIKNMITGTSQADCAILIIAGGVGE 122 (458)
T ss_dssp EEEEECCCCTT------------HHHHHHHSSSCCSEEEEEEECSHHH
T ss_pred EEEEECCCcHH------------HHHHHHhhhhhCCEEEEEEeCCcCc
Confidence 88999999531 1234556677889999999998763
No 229
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.22 E-value=5e-07 Score=72.94 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
....+|+++|.+|||||||+|.|.+...... ..+..+.......+...+ ..+.++||||..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-YISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH-HHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 3456789999999999999999998654321 122222222222233333 257899999963
No 230
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.22 E-value=2.6e-07 Score=88.04 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=65.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCC-----------Cccc----------ceEEEEEeeCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-----------NTTT----------HEVLGVMTKAD 186 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~-----------~~t~----------~~~~~~~~~~~ 186 (242)
.+.+++ .+.+|..++|+|+||+|||||+++|+|...+..|... +... ....++.++
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q-- 183 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ-- 183 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS--
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec--
Confidence 355666 7899999999999999999999999998777655421 1100 001112211
Q ss_pred ceeEEeeccccchhccCCCHHH------HHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKD------VKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~------~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
.+............+ ...++.++++.+++.+.....+..+||+++|.+
T Consensus 184 -------~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 184 -------YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp -------CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH
T ss_pred -------hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH
Confidence 111100000000111 123577899999999888888888999999875
No 231
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.21 E-value=2.3e-06 Score=70.19 Aligned_cols=84 Identities=12% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+..... ....+........+...+ -.+.++||+|..... ..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~----------- 91 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD-NV----------- 91 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-TT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-HH-----------
Confidence 45678999999999999999998754321 111111111111111222 256799999964211 00
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
.-..+.-++.+++|+|+.++
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~ 111 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRP 111 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCT
T ss_pred HHHHcCCCeEEEEEEECcCH
Confidence 00123446777777777654
No 232
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.21 E-value=2e-06 Score=69.17 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
...++++|++|||||||+|.|++...+... .+..+.....+.+...+. .+.++|++|..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 457899999999999999999987654222 122222222333333333 33568999863
No 233
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.20 E-value=2e-06 Score=69.87 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
....++++|.+|||||||+|.+.+.... .....++.......+...+ -.+.++||||..... ..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~----------- 73 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS-RL----------- 73 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCC-C------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHH-HH-----------
Confidence 4567899999999999999999875432 1112222221111122222 267899999974211 00
Q ss_pred HHHHcCcccccceeeecCCc
Q 026174 216 AWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g 235 (242)
....+.-.+.+++|+|+.++
T Consensus 74 ~~~~~~~~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 74 RPLSYRGADIFVLAFSLISK 93 (212)
T ss_dssp -CGGGTTCSEEEEEEETTCH
T ss_pred HHhhccCCCEEEEEEECCCH
Confidence 00123445677777776654
No 234
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.19 E-value=6.7e-07 Score=70.47 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
...+++++|.+|||||||+|.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 235
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.19 E-value=5e-06 Score=71.99 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=52.2
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccchhccCCCHHHHHHH
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVR 212 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 212 (242)
.......++++|.+|||||||+|.+.+.... .....++.......+...+. .+.++||||..... .
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~--------- 218 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-R--------- 218 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-T---------
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-H---------
Confidence 3456778999999999999999999865432 22233333222222333333 34599999974211 0
Q ss_pred HHHHHHHcCcccccceeeecCCcc
Q 026174 213 VESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 213 i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.....+.-++.+++|+|++++.
T Consensus 219 --~~~~~~~~~d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 219 --LRPLSYPQTDVFLICFSLVSPA 240 (332)
T ss_dssp --TGGGGCTTCSEEEEEEETTCHH
T ss_pred --HHHHhccCCCEEEEEEeCCCHH
Confidence 0111345567788888876643
No 236
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.18 E-value=6e-07 Score=71.49 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
...+|+++|.+|||||||+|.+.+...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 346789999999999999999987543
No 237
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=1.2e-06 Score=70.15 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~ 198 (242)
...|+++|.+|||||||+|.+.+.... .....++.......+...+ ..+.++||||..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence 457899999999999999999876432 1222222222212222222 256799999974
No 238
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.18 E-value=2.5e-06 Score=68.90 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
...++++|++|||||||+|.|+|....... .+..+.....+.+...+. .+.++|++|..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 356899999999999999999987543221 122222222233333332 45679999864
No 239
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.18 E-value=1.4e-06 Score=81.71 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=54.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcce--e-------------ecC------CCCcccceEEEEEeeCCceeEEeecc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--A-------------VSR------KTNTTTHEVLGVMTKADTQICIFDTP 195 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~-------------~~~------~~~~t~~~~~~~~~~~~~~~~liDtp 195 (242)
....+++++|.+|+|||||+|.|++.... . +.+ ..+.|.......+...+..+.++|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 34678999999999999999999853110 0 000 11222222222233445578999999
Q ss_pred ccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 196 G~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
|.... . ......+..+|.+++|+|+..|.+
T Consensus 91 G~~df----~--------~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 91 GHEDF----S--------EDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp CSTTC----C--------HHHHHGGGGCSEEEEEEETTTCSC
T ss_pred CChhH----H--------HHHHHHHHHCCEEEEEEeCCccch
Confidence 97421 1 133445677899999999988754
No 240
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.18 E-value=1.1e-06 Score=80.32 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc--cee------------ec----------------CCCCcccceEEEEEeeCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VAA------------VS----------------RKTNTTTHEVLGVMTKADT 187 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~--~~~------------~~----------------~~~~~t~~~~~~~~~~~~~ 187 (242)
+..+++++|.+|+|||||+|.|++.. ... .+ ...+.|.......+.....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 35678999999999999999997531 000 00 0233444333223333445
Q ss_pred eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
.+.++||||.... .......+..+|.+++|+|+.+|
T Consensus 85 ~~~iiDtpG~~~f------------~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 85 FFTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EEEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEEEECCCcHHH------------HHHHHhhhhhcCEEEEEEECCCC
Confidence 7899999996421 22355567788999999999886
No 241
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.48 E-value=2.2e-07 Score=75.25 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCC--ceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
...+|+++|.+|||||||+|.+.+..... ....++.......+...+ -.+.++||||..... . .
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~ 94 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------R---L 94 (204)
Confidence 45678999999999999999998654321 111122111111111112 245589999963210 0 0
Q ss_pred HHHHcCcccccceeeecCCcc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~ 236 (242)
....+.-+|.+++|+|+.++.
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~ 115 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPA 115 (204)
Confidence 111233457777888876543
No 242
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.16 E-value=4.7e-06 Score=75.43 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeec--CCCCcccceEEEE--Eee-------------C--------CceeEEe
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGV--MTK-------------A--------DTQICIF 192 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~--~~~~~t~~~~~~~--~~~-------------~--------~~~~~li 192 (242)
+..+++++|..++|||||++.|+|....... ..++.|....... +.. . ...+.++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4567899999999999999999975432211 1234444322111 100 0 1357899
Q ss_pred eccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
||||.. .-...++..+...|.+++|+|+..|.
T Consensus 87 DtPGh~------------~f~~~~~~~~~~~D~~ilVvda~~g~ 118 (408)
T 1s0u_A 87 DSPGHE------------TLMATMLSGASLMDGAILVIAANEPC 118 (408)
T ss_dssp ECSSHH------------HHHHHHHTTCSCCSEEEEEEETTSCS
T ss_pred ECCCHH------------HHHHHHHHhHhhCCEEEEEEECCCCC
Confidence 999952 11234555566789999999998764
No 243
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=1.7e-06 Score=78.91 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=33.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCCcceeecC--C----CCcccceEEEEEeeCC---ceeEEeeccccchh
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSR--K----TNTTTHEVLGVMTKAD---TQICIFDTPGLMLN 200 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~~~~--~----~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~ 200 (242)
.++|+|+||+|||||+|+|+|...+..+. . ..+......+++.+.. ..++++||+|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 46999999999999999999976532221 0 1111112334444432 25789999998643
No 244
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.14 E-value=2e-07 Score=88.58 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceee------------------------------cCCCCcccceEEEEEeeCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADT 187 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 187 (242)
...+|+++|.+|+|||||+|.|++...... ...++.|.......+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 445799999999999999999964211000 01234555443333333345
Q ss_pred eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCc
Q 026174 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g 235 (242)
.+.++||||.......+ ...+..+|++++|+|+..|
T Consensus 256 ~i~iiDTPGh~~f~~~~------------~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM------------IAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp ---CCEEESSSEEEEEC------------CC-------CCSEEEEEEC
T ss_pred EEEEEECCChHHHHHHH------------HHHHhhCCEEEEEEECCCC
Confidence 67899999975321111 1123346788888888764
No 245
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.14 E-value=1.1e-06 Score=79.48 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=53.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc--------ceE-----------EEEEeeCCceeEEeecccc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--------HEV-----------LGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~--------~~~-----------~~~~~~~~~~~~liDtpG~ 197 (242)
.+..+++++|.+|+|||||+|+|++............+. ... ..........+.++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 456789999999999999999999843221100000000 000 0000000135689999995
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
.. ........+..+|.+++|+|+..+.
T Consensus 86 ~~------------~~~~~~~~~~~~D~~ilVvda~~~~ 112 (403)
T 3sjy_A 86 EV------------LMATMLSGAALMDGAILVVAANEPF 112 (403)
T ss_dssp GG------------GHHHHHHHHTTCSEEEEEEETTSCS
T ss_pred HH------------HHHHHHHHHhhCCEEEEEEECCCCC
Confidence 21 1334555667789999999998875
No 246
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.13 E-value=3.5e-06 Score=81.06 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=58.4
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcce--eecC---------------CCCcccceEEEEEeeCCceeEEeecccc
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSR---------------KTNTTTHEVLGVMTKADTQICIFDTPGL 197 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~--~~~~---------------~~~~t~~~~~~~~~~~~~~~~liDtpG~ 197 (242)
....+.+++++|++|+|||||++.|++.... ..+. ..+.+...+...+......+.++||||.
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 4567889999999999999999999853221 0110 1122333333444444557789999997
Q ss_pred chhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
... . ......+..+|..++|+|...|.+.
T Consensus 85 ~~f---------~---~~~~~~l~~ad~~ilVvD~~~g~~~ 113 (665)
T 2dy1_A 85 GDF---------V---GEIRGALEAADAALVAVSAEAGVQV 113 (665)
T ss_dssp GGG---------H---HHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred cch---------H---HHHHHHHhhcCcEEEEEcCCcccch
Confidence 421 1 1233444567888999998877653
No 247
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=8.2e-06 Score=67.30 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeecccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGL 197 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~ 197 (242)
..+|+++|.+|||||||+|.+.+....-....+.++.......+...+. .+.++||+|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 4678999999999999999999753321222222222221122222222 3467899885
No 248
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=6.9e-06 Score=73.32 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceeecCCC------Ccccce-EEEEEeeCC---ceeEEeeccccch
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------NTTTHE-VLGVMTKAD---TQICIFDTPGLML 199 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~------~~t~~~-~~~~~~~~~---~~~~liDtpG~~~ 199 (242)
..++++|++|+|||||+|.|.+......+..+ ..|... ...+..+.. ..+.++||||+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 45789999999999999999886544322211 112111 112222221 1578999999953
No 249
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.3e-07 Score=88.40 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=61.1
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCccc-ceEEEEEe----eC------CceeEEeeccccch----
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMT----KA------DTQICIFDTPGLML---- 199 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~-~~~~~~~~----~~------~~~~~liDtpG~~~---- 199 (242)
...+|..++|+|+||+|||||+++|+|...+..|....... ....+++. +. ...+..+-.+.+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 45789999999999999999999999988776654311000 00000000 00 00000000010000
Q ss_pred hccC-C-CH--------HHHHHHHHHHHHHcCcccccceeeecCCccccccc
Q 026174 200 NKSG-Y-SH--------KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRFVI 241 (242)
Q Consensus 200 ~~~~-~-~~--------~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~~i 241 (242)
...+ . .. ......+.++++.+++.+.....+..+||+++|.+
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence 0000 0 00 01135688899999999988888889999998875
No 250
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.10 E-value=4.2e-07 Score=85.35 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=56.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEee-CCceeEEeeccccchhccCCCHHHHHHHHHH
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~ 215 (242)
++..+|+++|.+|+|||||+|.|.+.... ....++.|.+.....+.. .+..+.++||||........
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~----------- 69 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR----------- 69 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-----------
Confidence 34567889999999999999999875443 234455555433222222 23467899999963211100
Q ss_pred HHHHcCcccccceeeecCCcccc
Q 026174 216 AWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 216 ~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
...+..+|.+++|+|+..|.+.
T Consensus 70 -~~~~~~aD~vILVVDa~dg~~~ 91 (537)
T 3izy_P 70 -ARGTQVTDIVILVVAADDGVMK 91 (537)
T ss_dssp -BSSSBSBSSCEEECBSSSCCCH
T ss_pred -HHHHccCCEEEEEEECCCCccH
Confidence 1124557888888888876543
No 251
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.07 E-value=2.7e-06 Score=82.23 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC---Ccc--e------eecC------CCCcccceEEEEEeeCCceeEEeeccccchh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG---TKV--A------AVSR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g---~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
...+++++|.+|+|||||+|.|++ ... . .+.+ ..+.|.......+...+..+.++||||....
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 456789999999999999999984 211 0 0111 2334444333334455567899999998531
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.. .....+..+|.+++|+|+..+.+.
T Consensus 89 ----~~--------~~~~~l~~aD~~llVvDa~~g~~~ 114 (693)
T 2xex_A 89 ----TV--------EVERSLRVLDGAVTVLDAQSGVEP 114 (693)
T ss_dssp ----CH--------HHHHHHHHCSEEEEEEETTTBSCH
T ss_pred ----HH--------HHHHHHHHCCEEEEEECCCCCCcH
Confidence 11 122334458999999999887553
No 252
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.07 E-value=2.3e-06 Score=74.52 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCchhHHHHHHhCC-cceeecCCCC------ccc-ceEEEEEeeCC---ceeEEeeccccch
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGT-KVAAVSRKTN------TTT-HEVLGVMTKAD---TQICIFDTPGLML 199 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~-~~~~~~~~~~------~t~-~~~~~~~~~~~---~~~~liDtpG~~~ 199 (242)
..++++|+||+|||||+|.|.|. ..+..+ .+. .+. ....+++.+.. ..++++||+|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 34699999999999999999986 333322 110 111 12234444432 3678999999853
No 253
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.06 E-value=9.8e-07 Score=82.20 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHH
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l 217 (242)
+...++++|.+|+|||||++.|.+.... .+..++.|.+.....+...+..+.++||||.......+ .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~------------~ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR------------A 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB------------C
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH------------H
Confidence 4567889999999999999999874322 23334444443222233344578899999974221110 1
Q ss_pred HHcCcccccceeeecCCcccc
Q 026174 218 SAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 218 ~~~~l~d~ll~v~D~~~g~~~ 238 (242)
..+..+|.+++|+|+.+|.+.
T Consensus 70 ~~~~~aD~aILVVda~~g~~~ 90 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMP 90 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCT
T ss_pred HHHhhCCEEEEEeecccCccH
Confidence 224567888888888876543
No 254
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.06 E-value=2e-06 Score=75.29 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=34.1
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..++++++.+++|..++|+|+||+|||||+++|+|..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678899999999999999999999999999999864
No 255
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.06 E-value=1.9e-06 Score=79.61 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=47.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcce--------------e----------ecC------CCCcccceEEEEEeeCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--------------A----------VSR------KTNTTTHEVLGVMTKAD 186 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~~ 186 (242)
+...+++++|..|+|||||++.|+..... . ..+ ..+.|......++....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 34567999999999999999999641100 0 000 12333332222233334
Q ss_pred ceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 187 ~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
..+.++||||.... .......+..+|.+++|+|+..|.
T Consensus 121 ~~~~iiDtPGh~~f------------~~~~~~~~~~aD~~ilVvDa~~g~ 158 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY------------VTNMINGASQADIGVLVISARRGE 158 (467)
T ss_dssp EEEEECCCCC-----------------------TTSCSEEEEEEECSTTH
T ss_pred eEEEEEECCCcHHH------------HHHHHhhcccCCEEEEEEeCCcCc
Confidence 57789999996321 223445567789999999998873
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.03 E-value=1.8e-06 Score=68.73 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.7
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
+++.+++|..++++|+||+|||||++.+.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 56788999999999999999999999543
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.01 E-value=2.2e-06 Score=70.12 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.6
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..+.+|..++|+|+||+|||||+++|+|..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467889999999999999999999999865
No 258
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.00 E-value=2.3e-06 Score=71.12 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=22.4
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHh-CCc
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV-GTK 163 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~-g~~ 163 (242)
...++++.+++|..++|+|+||+|||||++.|. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345578899999999999999999999999999 864
No 259
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.00 E-value=5.6e-06 Score=73.62 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=22.9
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
......+++++|.+|+|||||++.|..
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999963
No 260
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.97 E-value=9.1e-06 Score=78.51 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC---Ccc--eee------cC------CCCcccceEEEEEeeCCceeEEeeccccchh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG---TKV--AAV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g---~~~--~~~------~~------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~ 200 (242)
...+++++|.+|+|||||+|.|+. ... ..+ .+ ..+.|.......+...+..+.++||||....
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 356789999999999999999973 110 000 00 1233333333334444567899999997421
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.......+..+|.+++|+|+..+.+.
T Consensus 91 ------------~~~~~~~l~~aD~~ilVvDa~~g~~~ 116 (691)
T 1dar_A 91 ------------TIEVERSMRVLDGAIVVFDSSQGVEP 116 (691)
T ss_dssp ------------HHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred ------------HHHHHHHHHHCCEEEEEEECCCCcch
Confidence 11223344567899999999887653
No 261
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.97 E-value=6.2e-06 Score=78.53 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=21.1
Q ss_pred EEEEcCCCCchhHHHHHHhCCcce
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
++|+|+||+|||||+++|+|...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 889999999999999999998655
No 262
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.96 E-value=2.9e-06 Score=70.63 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.3
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
...++|..++|+||||+|||||++.|+|...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567899999999999999999999999765
No 263
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.96 E-value=7.9e-06 Score=65.77 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
...|+++|.+|||||||+|.+.+....-....+.++.......+..++. .+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 3578999999999999999998643211222222222221111222222 34678998853
No 264
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.96 E-value=4.3e-07 Score=87.35 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=27.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHH
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSII 156 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLi 156 (242)
.++++++.+++|.+++|+|+||+|||||+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 47778999999999999999999999996
No 265
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.95 E-value=3.2e-06 Score=71.03 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=24.9
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++++++.++++..++|+|++|+|||||++.|.+.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999999999999874
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.95 E-value=3.5e-06 Score=68.11 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.6
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
...+|..++|+|+||+|||||++.|+|..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44678899999999999999999998853
No 267
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.94 E-value=4.9e-06 Score=76.41 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC---------------cceeecCCCCcccceEEEEEeeC-----------CceeEE
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKA-----------DTQICI 191 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~l 191 (242)
+-..|+|+|++++|||||+|.|.|. .....+ ..+++++.+.|+..+. ...+.+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 4456889999999999999999874 111111 2224555555654332 135789
Q ss_pred eeccccchh
Q 026174 192 FDTPGLMLN 200 (242)
Q Consensus 192 iDtpG~~~~ 200 (242)
+||||+..+
T Consensus 145 lDTeG~~~~ 153 (447)
T 3q5d_A 145 MDTQGTFDS 153 (447)
T ss_dssp EEEECCCSS
T ss_pred EcCCccccc
Confidence 999998643
No 268
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.93 E-value=1.2e-05 Score=81.18 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcce----------e-----ecCCCCcccceEEEEEeeCCceeEEeeccccchhc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA----------A-----VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~----------~-----~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 201 (242)
++..+++++|.+|+|||||++.|++.... . .....+.|.......+......+.++||||...
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH--
Confidence 44567999999999999999999863100 0 001123333221111222345788999999632
Q ss_pred cCCCHHHHHHHHHHHHHHcCcccccceeeecCCccc
Q 026174 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT 237 (242)
Q Consensus 202 ~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~ 237 (242)
-.......+..+|.+++|+|+.+|.+
T Consensus 372 ----------F~~~mi~gas~AD~aILVVDAtdGv~ 397 (1289)
T 3avx_A 372 ----------YVKNMITGAAQMDGAILVVAATDGPM 397 (1289)
T ss_dssp ----------HHHHHHHTSCCCSEEEEEEETTTCSC
T ss_pred ----------HHHHHHHHHhhCCEEEEEEcCCccCc
Confidence 13445566778899999999988754
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.93 E-value=3.8e-06 Score=75.06 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.8
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+++..+++..++++|+||+||||+++.|+|...
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3455677899999999999999999999988543
No 270
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.93 E-value=4.5e-06 Score=72.94 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
++..++++|+||||||||++.|++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999987543
No 271
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.92 E-value=2.5e-06 Score=70.49 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcceeecCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK 170 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~ 170 (242)
.+|..++|+|+||+|||||+++|+|. .+..|..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 56999999999999999999999998 7665544
No 272
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.88 E-value=6.6e-06 Score=78.16 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeC------------------CceeEEeeccccch
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------------DTQICIFDTPGLML 199 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~liDtpG~~~ 199 (242)
+...++++|.+|+|||||++.|++..... ....+.|.+....++... ...+.++||||...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~-~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc-ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35678999999999999999998753321 111122222111122110 11478999999742
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
...... ..+..+|.+++|+|+.+|.+.+
T Consensus 83 F~~~~~------------r~~~~aD~aILVvDa~~Gv~~q 110 (594)
T 1g7s_A 83 FTTLRK------------RGGALADLAILIVDINEGFKPQ 110 (594)
T ss_dssp CTTSBC------------SSSBSCSEEEEEEETTTCCCHH
T ss_pred HHHHHH------------HHHhhCCEEEEEEECCCCccHh
Confidence 211111 1245678999999998876543
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.84 E-value=6.9e-06 Score=65.71 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
.|..++|+|+||+|||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46788999999999999999998854
No 274
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.84 E-value=2.6e-05 Score=75.42 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc---ce--ee------cC------CCCcccceEEEEEeeCC-------ceeEEee
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK---VA--AV------SR------KTNTTTHEVLGVMTKAD-------TQICIFD 193 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~---~~--~~------~~------~~~~t~~~~~~~~~~~~-------~~~~liD 193 (242)
...+++++|..|+|||||++.|+... .. .+ .+ ..+.|.......+...+ ..+.++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45678999999999999999996421 00 00 00 12223222222233333 4678999
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
|||.... . ......+..+|.+++|+|+..|.+.
T Consensus 89 TPG~~df---------~---~~~~~~l~~aD~aIlVvDa~~gv~~ 121 (704)
T 2rdo_7 89 TPGHVDF---------T---IEVERSMRVLDGAVMVYCAVGGVQP 121 (704)
T ss_pred CCCccch---------H---HHHHHHHHHCCEEEEEEeCCCCCcH
Confidence 9997421 1 1223344567999999999887543
No 275
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.82 E-value=1.4e-05 Score=75.94 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcce--------eec------CCCCcccceEEEEEeeC---C--ceeEEeeccccchh
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMTKA---D--TQICIFDTPGLMLN 200 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~--------~~~------~~~~~t~~~~~~~~~~~---~--~~~~liDtpG~~~~ 200 (242)
.+++++|.+|+|||||++.|+..... ... ...+.|.......+.+. + ..+.++||||....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 46899999999999999999752110 000 01233333222222221 1 35789999997431
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 201 ~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
.. .....+..+|.+++|+|+..|.+.+
T Consensus 85 ---------~~---ev~~~l~~aD~aILVVDa~~gv~~q 111 (599)
T 3cb4_D 85 ---------SY---EVSRSLAACEGALLVVDAGQGVEAQ 111 (599)
T ss_dssp ---------HH---HHHHHHHHCSEEEEEEETTTCCCTH
T ss_pred ---------HH---HHHHHHHHCCEEEEEEECCCCCCHH
Confidence 11 1222344568999999998876543
No 276
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.82 E-value=4e-05 Score=71.36 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=52.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh------CCcceeecCC---CCc--------ccc-e-EEEE----------------
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRK---TNT--------TTH-E-VLGV---------------- 181 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~------g~~~~~~~~~---~~~--------t~~-~-~~~~---------------- 181 (242)
.+...|+++|++||||||+++.|+ |.+..-+..- +.. ++. . ..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998 6654333221 100 000 0 0000
Q ss_pred EeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcc
Q 026174 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236 (242)
Q Consensus 182 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~ 236 (242)
+...+..+.++||||.... + ......+..+.+.+ ..+.+++|+|+..|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~----~-~~l~~el~~~~~~i-~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ----E-DSLFEEMLQVANAI-QPDNIVYVMDASIGQ 227 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT----C-HHHHHHHHHHHHHH-CCSEEEEEEETTCCT
T ss_pred HHHCCCcEEEEeCCCCccc----c-hhHHHHHHHHHhhh-cCceEEEEEeccccc
Confidence 0002346789999998632 1 12222233333322 567889999998864
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.82 E-value=5.7e-06 Score=67.41 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+|..++|+|+||+|||||++.|+|..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46788999999999999999998743
No 278
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.81 E-value=1.4e-05 Score=75.86 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcce--------eec------CCCCcccceEEEEEee---CC--ceeEEeeccccch
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMTK---AD--TQICIFDTPGLML 199 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~--------~~~------~~~~~t~~~~~~~~~~---~~--~~~~liDtpG~~~ 199 (242)
-..++++|.+|+|||||++.|+..... ... ...+.|.......+.+ ++ ..+.++||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 356899999999999999999652110 000 0122333221111211 11 3567999999853
Q ss_pred hccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 200 ~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
. .. .....+..+|.+++|+|+..|.+.+
T Consensus 86 F---------~~---ev~r~l~~aD~aILVVDa~~gv~~q 113 (600)
T 2ywe_A 86 F---------SY---EVSRALAACEGALLLIDASQGIEAQ 113 (600)
T ss_dssp G---------HH---HHHHHHHTCSEEEEEEETTTBCCHH
T ss_pred H---------HH---HHHHHHHhCCEEEEEEECCCCccHH
Confidence 2 11 2223345678999999999886543
No 279
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.81 E-value=1.2e-05 Score=79.20 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCcceeec---------------CCCCcccceEEEEEeeC----------------Cc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKA----------------DT 187 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~ 187 (242)
...++|+|.+|+|||||+|.|++....... ...+.|.......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 457899999999999999999763211110 01122322211112121 23
Q ss_pred eeEEeeccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCcccc
Q 026174 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTR 238 (242)
Q Consensus 188 ~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~ 238 (242)
.+.++||||.... .. .....+..+|.+++|+|+..|.+.
T Consensus 99 ~i~liDTPG~~df----~~--------~~~~~l~~aD~ailVvDa~~g~~~ 137 (842)
T 1n0u_A 99 LINLIDSPGHVDF----SS--------EVTAALRVTDGALVVVDTIEGVCV 137 (842)
T ss_dssp EEEEECCCCCCSS----CH--------HHHHHHHTCSEEEEEEETTTBSCH
T ss_pred eEEEEECcCchhh----HH--------HHHHHHHhCCEEEEEEeCCCCCCH
Confidence 5789999998531 11 223344568999999999887543
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.79 E-value=1.2e-05 Score=68.69 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=29.4
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
+++++ +.+|..++|+|+||+|||||+++|+|...+
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 44455 788999999999999999999999986543
No 281
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.78 E-value=2.5e-05 Score=73.51 Aligned_cols=92 Identities=20% Similarity=0.301 Sum_probs=59.3
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhC---Ccc------------eeec------CCCCcccceEEEEEeeCCceeEEeec
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVG---TKV------------AAVS------RKTNTTTHEVLGVMTKADTQICIFDT 194 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g---~~~------------~~~~------~~~~~t~~~~~~~~~~~~~~~~liDt 194 (242)
..+-.+++|+|..++|||||.-+|+- ... ..+. ...+.|.......+.+.+..++++||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 34467799999999999999999852 100 0011 11233444334445666778999999
Q ss_pred cccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 195 pG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
||..... .+....+...|..+.|+|+..|-+.|
T Consensus 108 PGHvDF~------------~Ev~raL~~~DgAvlVvda~~GV~~q 140 (548)
T 3vqt_A 108 PGHQDFS------------EDTYRVLTAVDSALVVIDAAKGVEAQ 140 (548)
T ss_dssp CCGGGCS------------HHHHHHHHSCSEEEEEEETTTBSCHH
T ss_pred CCcHHHH------------HHHHHHHHhcCceEEEeecCCCcccc
Confidence 9986431 24445567788999999999987654
No 282
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.77 E-value=8.7e-06 Score=72.65 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=33.2
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
.++++++.+++|..++|+|+||+|||||+|+|++...+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34667888999999999999999999999999997554
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.75 E-value=1.4e-05 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+++|..++|+|+||+|||||++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 567889999999999999999999986
No 284
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.75 E-value=9.4e-06 Score=75.93 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
....+|+++|.+|||||||+|.+++...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~ 66 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF 66 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4457899999999999999999998653
No 285
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.75 E-value=7.9e-06 Score=72.11 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=33.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
.++++++.+++|..++++|+||+|||||+|+|+|...+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 455677888889999999999999999999999975443
No 286
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.74 E-value=6.4e-06 Score=82.10 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=35.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
.++++++.+..|.+++|+|+||+|||||++.|+|...+..|
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 36677888999999999999999999999999998766544
No 287
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.72 E-value=1.2e-05 Score=71.38 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=32.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
.++++ +.+.+|.+++|+|+||+|||||++.|+|...+.
T Consensus 61 ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 61 AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34556 889999999999999999999999999976544
No 288
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.72 E-value=6.3e-05 Score=62.23 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcceee-cCCCCcccceEEEEEeeCCc--eeEEeeccccc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADT--QICIFDTPGLM 198 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~~~-~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~ 198 (242)
.+|+++|.+|||||||++.++....... ....+...... .+...+. .+.++||+|..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k--~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK--TMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEE--EEECSSCEEEEEEECCSCTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEE--EEEecceEEEEEEEECCCch
Confidence 4688999999999999999976432211 11111111111 1222222 45799999963
No 289
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.71 E-value=1.4e-05 Score=73.61 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=33.3
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceeec
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS 168 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~~ 168 (242)
++++.+..|.+++|+|+||+|||||+++|+|...+..+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 47888999999999999999999999999998655443
No 290
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.69 E-value=1.5e-05 Score=65.10 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.9
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+++..++|+|+||+|||||++.|.|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56789999999999999999999988654
No 291
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.69 E-value=9.4e-06 Score=75.20 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=32.1
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCccee
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
++++++.+++ ..++|+|+||+|||||+++|+|...+.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 5567888999 999999999999999999999865554
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=1.8e-05 Score=64.89 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..+..++|+||||+|||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 467888999999999999999998754
No 293
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=2.5e-05 Score=63.94 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
++|..++|+||||+|||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5688899999999999999999988653
No 294
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.65 E-value=1.9e-05 Score=72.32 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcceee
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV 167 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~~~ 167 (242)
.++++ +.+.+|.+++|+|+||+|||||++.|+|...+..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 45667 8899999999999999999999999999765543
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=1.6e-05 Score=63.78 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
..++|+|+||+|||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998643
No 296
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.62 E-value=2.1e-05 Score=63.22 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCCc
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+++|+|+||+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 297
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=2.9e-05 Score=63.55 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=26.7
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+++|..++|+|+||+|||||++.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999883
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.60 E-value=2.9e-05 Score=62.59 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+.+|..++|+|+||+||||+++.|.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999998865
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.59 E-value=2.1e-05 Score=68.56 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+++...+|..++++|+||+||||+++.|+|...
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566778899999999999999999999988543
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.59 E-value=2.5e-05 Score=63.50 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+++..++|+|+||+|||||++.|.|..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998863
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.54 E-value=4.2e-05 Score=63.38 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=25.2
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
..+++|..++|+|+||+|||||++.|+
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999999999999998
No 302
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.53 E-value=3.8e-05 Score=65.98 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=31.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++++.+.+++|..++|+|+||+|||||++.|++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667888999999999999999999999999774
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=5.7e-05 Score=70.07 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=28.8
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
++++.+..|..++|+|+||+|||||++.|+|..
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 456677889999999999999999999998854
No 304
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.52 E-value=3.5e-05 Score=68.54 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=32.5
Q ss_pred hhhhhhccC--CcEEEEEcCCCCchhHHHHHHhCCcceee
Q 026174 130 EEVKEEDQK--SVAVGIIGAPNAGKSSIINYMVGTKVAAV 167 (242)
Q Consensus 130 ~~~~~~~~~--~~~v~lvG~sgvGKSTLin~L~g~~~~~~ 167 (242)
..+...+.+ +.+++|+|+||+|||||++.|+|...+..
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 346778888 99999999999999999999999766544
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=5.1e-05 Score=61.43 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=22.5
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++++++.+.++..++|+|+||+||||+.+.|.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3566788889999999999999999999999964
No 306
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.49 E-value=4.5e-05 Score=66.36 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+..++|+|+||+|||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 77889999999999999999999885
No 307
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.47 E-value=4.1e-05 Score=71.42 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=33.4
Q ss_pred hhhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcce
Q 026174 126 EEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 126 ~~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
.+.++.++..+..+..++|+|++|+|||||+|+|+|...+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3455667778888999999999999999999999996544
No 308
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.46 E-value=2.8e-05 Score=74.67 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=30.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.++++++.+++|..++|+|+||+|||||+|.|+
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 477888999999999999999999999999764
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=4.4e-05 Score=61.97 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
|..++++|+||+|||||++.|+|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4568999999999999999998854
No 310
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.42 E-value=7.9e-05 Score=62.32 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh---CCcceee
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV---GTKVAAV 167 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~---g~~~~~~ 167 (242)
++..++|+|+||+|||||++.|+ |...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 46789999999999999999999 8765543
No 311
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.42 E-value=8.4e-05 Score=65.56 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=44.8
Q ss_pred EEEEcCCCCchhHHHHHHhCCcceeecCCCCcccceEEEEEeeCCceeEEeeccccchhccCCCHHHHHHHHHHHHHHcC
Q 026174 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~i~~~l~~~~ 221 (242)
++++|.+|||||||++.+.+...+......+.|.......+ ...-.+.++||+|-..... +. . ..-..+.
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~--~~--l-----~~~~yyr 71 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFE--PS--Y-----DSERLFK 71 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCC--CS--H-----HHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccc--hh--h-----hhhhhcc
Confidence 57999999999999998876533221111112222111112 1224678999999742210 00 0 0011234
Q ss_pred cccccceeeecCCc
Q 026174 222 LFEVLMVVFDVHRH 235 (242)
Q Consensus 222 l~d~ll~v~D~~~g 235 (242)
-++.+++|+|+.+.
T Consensus 72 ~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 72 SVGALVYVIDSQDE 85 (331)
T ss_dssp TCSEEEEECCCSSC
T ss_pred CCCEEEEEEECCch
Confidence 56677777776654
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.42 E-value=7.7e-05 Score=60.41 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.2
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
....+++..++|+|+||+||||+.+.|.+..
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445778999999999999999999997743
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.42 E-value=0.00014 Score=57.71 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.1
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
++....+..++++|+||+|||||+++|++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455668899999999999999999998754
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=6.6e-05 Score=60.81 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+++..++|+|+||+||||+++.|.+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999999763
No 315
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=9.4e-05 Score=60.31 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=28.1
Q ss_pred hhhhhh-hccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 129 EEEVKE-EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 129 l~~~~~-~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
++++.. .+++|..++|+|+||+|||||++.|++
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444554 788999999999999999999999975
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.35 E-value=7.3e-05 Score=59.71 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..++|+|+||+|||||++.|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999999999976
No 317
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.30 E-value=7.4e-05 Score=63.37 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred hhhhhhhhhhccC---CcEEEEEcCCCCchhHHHHHHhC
Q 026174 126 EEEEEEVKEEDQK---SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 126 ~~~l~~~~~~~~~---~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...++++++.+.+ +..++|+|++|+||||+.+.|.+
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3467888899888 99999999999999999999965
No 318
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.29 E-value=5.9e-05 Score=72.16 Aligned_cols=87 Identities=16% Similarity=0.353 Sum_probs=57.3
Q ss_pred EEEEEcCCCCchhHHHHHHh---CCcc--eeec------CC------CCcccceEEEEEeeCCceeEEeeccccchhccC
Q 026174 141 AVGIIGAPNAGKSSIINYMV---GTKV--AAVS------RK------TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~---g~~~--~~~~------~~------~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 203 (242)
+++|+|+.++|||||...|+ |... ..+. +. .+.|.......+.+.+..++++||||....
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 57999999999999999884 3211 0111 10 123333322234455668899999997532
Q ss_pred CCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 204 ~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
..+....+...|..+.|+|+..|-+.|
T Consensus 81 ---------~~Ev~raL~~~DgavlVVDa~~GV~~q 107 (638)
T 3j25_A 81 ---------LAEVYRSLSVLDGAILLISAKDGVQAQ 107 (638)
T ss_dssp ---------HHHHHHHHTTCSEEECCEESSCTTCSH
T ss_pred ---------HHHHHHHHHHhCEEEEEEeCCCCCcHH
Confidence 234556677889999999999887654
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.29 E-value=0.00013 Score=61.53 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh---CCccee
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV---GTKVAA 166 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~---g~~~~~ 166 (242)
.++..++|+|++|+||||+.+.|. |...+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 568899999999999999999998 765544
No 320
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.29 E-value=0.0002 Score=61.22 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.9
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+.+++++...+.| ++|+|+||+|||||+++|++..
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 4566677777777 8899999999999999998743
No 321
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.25 E-value=0.00014 Score=60.37 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.8
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...++|..++|+|++|+||||+++.|.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44577899999999999999999999875
No 322
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=0.00016 Score=65.00 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=31.5
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+++++..++++..++++|+||+|||||++.|.+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346667788999999999999999999999999874
No 323
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.25 E-value=0.00012 Score=68.30 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=31.7
Q ss_pred hhhhhhhh-hccCCcEEEEEcCCCCchhHHHHH--HhCCc
Q 026174 127 EEEEEVKE-EDQKSVAVGIIGAPNAGKSSIINY--MVGTK 163 (242)
Q Consensus 127 ~~l~~~~~-~~~~~~~v~lvG~sgvGKSTLin~--L~g~~ 163 (242)
..++++++ .+++|..++|+|+||+|||||++. +.|..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35677888 999999999999999999999999 55643
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.23 E-value=0.0001 Score=58.35 Aligned_cols=30 Identities=30% Similarity=0.270 Sum_probs=24.3
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+...+.++ ..+|+|+||+|||||+.+|.+.
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 35556667 6679999999999999999663
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.23 E-value=0.0011 Score=60.69 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
++..++++|++|+||||+++.|+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 46788999999999999999997
No 326
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.23 E-value=0.00015 Score=64.82 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.9
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
+.++..++|+|+||+|||||+++|++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67889999999999999999999988543
No 327
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.22 E-value=0.00014 Score=64.14 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+++..++++|+||+||||+++.|+|...
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999988543
No 328
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.00015 Score=56.99 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++..++|+|+||+||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577899999999999999999865
No 329
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.18 E-value=4e-05 Score=68.93 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=28.0
Q ss_pred hhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 129 EEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 129 l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++++++.+.+| .++|+|+||+|||||+++|.+.
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 34567888999 8899999999999999998553
No 330
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00014 Score=56.98 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+..++|+|+||+||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 331
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=0.00017 Score=64.27 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=24.7
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
...++..++|+|+||+|||||+++|+|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34567789999999999999999998754
No 332
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.15 E-value=0.00053 Score=66.32 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc-----ceee------c------CCCCcccceEEEEEeeC-------CceeEEee
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK-----VAAV------S------RKTNTTTHEVLGVMTKA-------DTQICIFD 193 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~-----~~~~------~------~~~~~t~~~~~~~~~~~-------~~~~~liD 193 (242)
.-.+++|+|+-++|||||.-+|+-.. ...+ . ...+.|.......+.+. +..++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34579999999999999999885210 0000 0 11233333222223222 23679999
Q ss_pred ccccchhccCCCHHHHHHHHHHHHHHcCcccccceeeecCCccccc
Q 026174 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTRF 239 (242)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~i~~~l~~~~l~d~ll~v~D~~~g~~~~ 239 (242)
|||.... ..+....+..+|..+.|+|+..|-+.|
T Consensus 92 TPGHvDF------------~~Ev~~aLr~~DgavlvVDaveGV~~q 125 (709)
T 4fn5_A 92 TPGHVDF------------TIEVERSLRVLDGAVVVFCGTSGVEPQ 125 (709)
T ss_dssp CCSCTTC------------HHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred CCCCccc------------HHHHHHHHHHhCeEEEEEECCCCCchh
Confidence 9997532 224455667788999999999987654
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.11 E-value=0.00027 Score=57.28 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=26.7
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
-..++++..++|+|++|+||||+.+.|.+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456678889999999999999999999885
No 334
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.00024 Score=59.47 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=27.7
Q ss_pred hhhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 127 EEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 127 ~~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+++++...+.| ++|+|+||+|||||+++|.+.
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3455666777777 789999999999999999874
No 335
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.08 E-value=0.00035 Score=56.63 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=27.6
Q ss_pred hhhhh-hhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 129 EEEVK-EEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 129 l~~~~-~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
++++. ..+++|..++++|+||+|||||++.|++
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33343 4788999999999999999999999976
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=0.00027 Score=57.31 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=23.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...++..++|+|+|||||||+.+.|...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456778899999999999999999754
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00025 Score=55.16 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
++..++|+|++|+|||||+++|.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998754
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00034 Score=61.42 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...++|+|+||||||||++.|.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999764
No 339
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.01 E-value=0.00036 Score=63.45 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.++..++|+|+||+|||||+++|++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 5688899999999999999999988543
No 340
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.99 E-value=0.00034 Score=63.90 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...++++|++|+||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999976
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.98 E-value=0.00031 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.4
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..++..++|+|++|+||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999975
No 342
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.98 E-value=0.00034 Score=59.44 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=27.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+++++...+.+ ++|+|+||+|||||+++|.+.
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 455667777777 789999999999999999874
No 343
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.0004 Score=56.42 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....++++|.+|+|||||+|.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999763
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.00019 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCcce
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTKVA 165 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~~~ 165 (242)
..++|+|+||+|||||++.|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46899999999999999999886443
No 345
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.93 E-value=0.00078 Score=61.50 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
++..++++|++|+||||++..|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999999997
No 346
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.00054 Score=56.32 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=26.0
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+++|..++|+|+||+|||||+..|++
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 5678999999999999999999999987
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.87 E-value=0.00045 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+..++|+|++|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999763
No 348
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.81 E-value=0.00034 Score=61.34 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchhHHHHHHhCCc
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..++|+|+||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 557899999999999999998854
No 349
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00065 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchhHHHHHHhCC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..++|+|++|+||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999873
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.80 E-value=0.00048 Score=60.11 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
-..++|+|++|+|||||+|.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999764
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.78 E-value=0.00079 Score=53.64 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=24.1
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++.....+..++|+|++|+||||+.+.|...
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3455667888999999999999999998543
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.75 E-value=0.00045 Score=61.53 Aligned_cols=27 Identities=30% Similarity=0.291 Sum_probs=22.4
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
...+..| ..+|+|+||+|||||+++|+
T Consensus 18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 18 DIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455667 56799999999999999997
No 353
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.71 E-value=0.0015 Score=56.31 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.4
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
...+..|+|+|++|+|||||.+.|.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999997754
No 354
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.71 E-value=0.00075 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
+|..++++|++|+||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999763
No 355
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.70 E-value=0.00049 Score=67.48 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++|..++|+|+||+|||||++.|.|.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 57789999999999999999999874
No 356
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.70 E-value=0.00043 Score=68.96 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.7
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.++++++.++.|..++|+|+||+|||||++.|+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 367788999999999999999999999999864
No 357
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.66 E-value=0.00069 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....++++|.+|||||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999763
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.00069 Score=54.51 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
+++|+|++|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 359
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.63 E-value=0.00096 Score=59.07 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=29.4
Q ss_pred hhhh-hhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 129 EEEV-KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 129 l~~~-~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
++.+ .+.+++|..++|+|+||+|||||++.|++..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4443 4678999999999999999999999998743
No 360
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00058 Score=60.86 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+++..+.++ .++|+|+||+|||||+++|.+
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 346667777 788999999999999999975
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.59 E-value=0.00099 Score=53.89 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 026174 142 VGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g 161 (242)
|+|+|||||||+||++.|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999965
No 362
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.59 E-value=0.00029 Score=69.33 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=30.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHH-HhC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINY-MVG 161 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~-L~g 161 (242)
.++++++.++.|..++|+|+||+|||||++. |.|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3677889999999999999999999999996 654
No 363
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.59 E-value=0.00052 Score=68.16 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=25.9
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
++++..+.|..++|+||||+|||||++.+.+
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3445567889999999999999999999854
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.58 E-value=0.0011 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.|..++++|++|+||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999999999996
No 365
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.57 E-value=0.0013 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..|..+++.|++|+||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999999653
No 366
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0012 Score=51.27 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.++|+|++|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999964
No 367
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.57 E-value=0.00091 Score=56.85 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=25.2
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+++|..++|+|+||+|||||+..|++
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999999876
No 368
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.56 E-value=0.00043 Score=68.78 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.8
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.++++++.++.|..++|+|+||+|||||++.|+
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 367788999999999999999999999999864
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.56 E-value=0.001 Score=53.17 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...++++|++|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456889999999999999999764
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.00096 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...|+|+|++|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999964
No 371
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.52 E-value=0.00019 Score=59.92 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchhHHHHHHhCCccee
Q 026174 141 AVGIIGAPNAGKSSIINYMVGTKVAA 166 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~~~~~ 166 (242)
.++|+|+||+|||||+++|+|...+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 35799999999999999998865543
No 372
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.51 E-value=0.001 Score=66.15 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=24.0
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHH
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYM 159 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L 159 (242)
+++....|..++|+||||+||||+++.+
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444567889999999999999999999
No 373
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.51 E-value=0.0013 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhHHHHHH
Q 026174 141 AVGIIGAPNAGKSSIINYM 159 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L 159 (242)
.++++|++|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 374
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.47 E-value=0.0016 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..++|.|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999854
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.46 E-value=0.0017 Score=51.53 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.6
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...++..++++|++|+||||+.+.|...
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999999653
No 376
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.45 E-value=0.0016 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..|.++|+||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999853
No 377
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0017 Score=53.32 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.8
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
...+++|..++++|+||+|||||...++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 5668889999999999999999966553
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.44 E-value=0.0018 Score=50.20 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 026174 141 AVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~ 160 (242)
..+|+|+||+||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 55699999999999999985
No 379
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.0017 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|.++|+||+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999965
No 380
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.44 E-value=0.0012 Score=57.89 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=27.7
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++++...++..++++|++|+||||++..|++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35666778899999999999999999999966
No 381
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.43 E-value=0.001 Score=62.62 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=26.3
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
.+..|..++|+|+||+|||||+++|.+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 467899999999999999999999987543
No 382
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.0019 Score=56.21 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.6
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....++..++++|++|+||||++..|++.
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 33567789999999999999999999763
No 383
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.41 E-value=0.0009 Score=65.26 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
|..++|+|+||+|||||++.|.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7889999999999999999998854
No 384
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.39 E-value=0.0018 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCchhHHHHHHhC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g 161 (242)
..++++|+||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3578999999999999999975
No 385
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.0015 Score=56.54 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++..++++|++|+||||++..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.0018 Score=52.65 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.6
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.....+..++++|++|+||||+.+.|.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999764
No 387
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.34 E-value=0.0022 Score=51.27 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++..|+|+|++|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999764
No 388
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.31 E-value=0.0014 Score=57.07 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.1
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...+.++ ..+|+|+||+|||||+.+|..
T Consensus 19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred EEecCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 3455666 778999999999999999974
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.28 E-value=0.0046 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..+.++|+||+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567788999999999999999963
No 390
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.28 E-value=0.0022 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|+|+|++|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999999999965
No 391
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.27 E-value=0.0024 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|+|.|++|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56789999999999999999964
No 392
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.27 E-value=0.0014 Score=65.12 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=27.1
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHH
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIIN 157 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin 157 (242)
.++++++.++.|..++|+|+||+|||||++
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHH
Confidence 367788999999999999999999999973
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.25 E-value=0.0024 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999999999964
No 394
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.25 E-value=0.0022 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
..+..|+++|+||+||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 445678899999999999999996
No 395
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.25 E-value=0.002 Score=58.31 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.7
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
+..+..++|+|+||+|||||+++|.+..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4457788899999999999999997643
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.24 E-value=0.0031 Score=55.14 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=50.4
Q ss_pred CCccCccCCCCCCCCCCChhHHHHHHHHcCCeEEEeecc-cccccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 026174 55 FRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRIVFGEEA-QKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVK 133 (242)
Q Consensus 55 ~~i~~~~~NK~DL~~~~~~~~w~~~~~~~~~~v~~~s~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~ 133 (242)
..++-++.+|.|.++++ .++.-++.+.+++.++.. ......+ ...+...+. ....++...
T Consensus 79 ~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l--------------~~~l~~~~~-~~~~~H~~~ 139 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRL--------------TTFLEHELA-RTTSLHGVL 139 (314)
T ss_dssp TTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHH--------------HHHHHHHTC-EEEEEESEE
T ss_pred CCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHH--------------HHHHHHhhc-cceeeeEEE
Confidence 57777888999987643 445555567777765552 2222222 111121111 011122222
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+ .|.-++++|+||+||||+.+.|.+.
T Consensus 140 v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 140 VDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 222 4667889999999999999999763
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.24 E-value=0.0039 Score=52.27 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.2
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
....+..++++|+||+||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677889999999999999999865
No 398
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.23 E-value=0.0025 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+++..|+|+|++|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 399
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.21 E-value=0.0026 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++..|+|+|++|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999999853
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.18 E-value=0.0024 Score=50.27 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|+|.|++|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 401
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.14 E-value=0.003 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..++++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55788999999999999999853
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.08 E-value=0.0022 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..|+|+|++|+||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 466889999999999999998854
No 403
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.08 E-value=0.0018 Score=65.07 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
|..++|+||||+|||||++.+ |.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 688999999999999999999 64
No 404
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.07 E-value=0.0025 Score=59.36 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=27.7
Q ss_pred hhhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 133 ~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
.+.+.+|..++|+|+||+|||||++.+++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999998753
No 405
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.06 E-value=0.0015 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 026174 141 AVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.|+|+|++|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 406
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.06 E-value=0.0036 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|+|+|++|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999975
No 407
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.05 E-value=0.0036 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
++..|+|+|++|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999999998854
No 408
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.04 E-value=0.0035 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHh
Q 026174 139 SVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~ 160 (242)
+..|+|+|++|+||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998884
No 409
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.01 E-value=0.0037 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCC---------CCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAP---------NAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~s---------gvGKSTLin~L~g~ 162 (242)
....+|+++|.+ |||||||+|.+++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 445679999999 99999999999983
No 410
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.00 E-value=0.017 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.+...++++|.+|+||||+...|+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999986
No 411
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.003 Score=55.07 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~ 162 (242)
+.+.|+||+||||+++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 412
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0042 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....|+|+|++|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567899999999999999999764
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.93 E-value=0.0038 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=22.6
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.-..+.+++|+|++|+||||+.+.|.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346678899999999999999999975
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.90 E-value=0.004 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.+..|+|+|++|+||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999986
No 415
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.89 E-value=0.0043 Score=50.21 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhHHHHHHh
Q 026174 141 AVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~ 160 (242)
+|+|+|++|+||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999984
No 416
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.89 E-value=0.0047 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCchhHHHHHHh
Q 026174 140 VAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~ 160 (242)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 345699999999999999884
No 417
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.88 E-value=0.0034 Score=59.47 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=28.4
Q ss_pred hhhhhhccCCcEEEEEcCCCCchhHHHHHHhCCcc
Q 026174 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (242)
Q Consensus 130 ~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~~~ 164 (242)
+.++..+..+..++|+|+||+|||||+++|.+...
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 33455666778899999999999999999988643
No 418
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.88 E-value=0.005 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..|+|+|++|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455788999999999999999853
No 419
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.88 E-value=0.0044 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0037 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=16.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..|++.|++|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999853
No 421
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.85 E-value=0.0045 Score=55.03 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=23.6
Q ss_pred hhhhccCCcE--EEEEcCCCCchhHHHHHHhC
Q 026174 132 VKEEDQKSVA--VGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 132 ~~~~~~~~~~--v~lvG~sgvGKSTLin~L~g 161 (242)
++..+..+.. ++|+|++|+||||+.+.|.+
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4445555554 89999999999999998866
No 422
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.85 E-value=0.0052 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.....|+|+|++|+||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999885
No 423
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.83 E-value=0.004 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..|+|+|++|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999853
No 424
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.80 E-value=0.0049 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
+|+|+|+||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999843
No 425
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.79 E-value=0.0054 Score=48.76 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...++++|++|+|||||++.|.+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999865
No 426
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.75 E-value=0.0053 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=18.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.++ ..+|+|+||+|||||+.+|.
T Consensus 22 ~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHH
Confidence 444 44699999999999999883
No 427
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.73 E-value=0.0077 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++..|+|+|+||+||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999999853
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.72 E-value=0.0056 Score=48.24 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=18.7
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.+++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.72 E-value=0.0057 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|.++|+||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56788999999999999999864
No 430
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.67 E-value=0.0072 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+..+.|.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999988653
No 431
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0058 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|+|+|++|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998853
No 432
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.67 E-value=0.0058 Score=57.22 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.9
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++... ++..++|+|+||+|||||.++|.+.
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44444 6778899999999999999999764
No 433
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.66 E-value=0.008 Score=55.77 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=26.0
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+.++....+.+ ++|+|+||+|||||+++|.+.
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 344555556666 789999999999999999874
No 434
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.64 E-value=0.0058 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.++|+|+||+||||+-+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 435
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.60 E-value=0.0068 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|+|.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0068 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.+..++|+|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.59 E-value=0.0077 Score=54.33 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHH
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYM 159 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L 159 (242)
.-+++|..+.|+|+||+|||||+..|
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHH
Confidence 56789999999999999999999955
No 438
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.58 E-value=0.0049 Score=53.17 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
++..++++|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999999999999999763
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.51 E-value=0.007 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|+|+|++|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999843
No 440
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.51 E-value=0.0069 Score=54.62 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.5
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....+.+|.+++|+|++|+|||||++.|.+.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4677889999999999999999999988763
No 441
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.48 E-value=0.0067 Score=47.05 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|+|+|++|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998854
No 442
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.44 E-value=0.013 Score=50.13 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.7
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+....+.+.|+||+|||+|.++|+..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344556778899999999999999753
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.43 E-value=0.014 Score=48.35 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHh-----CCcceee
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMV-----GTKVAAV 167 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~-----g~~~~~~ 167 (242)
.....++++|..||||||+++.|. |.+...+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 345677899999999999999998 6655443
No 444
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.41 E-value=0.008 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.++|+|+||+|||||-+.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999865
No 445
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.0078 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...+.|+|+||+|||||.++|.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 334789999999999999999763
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.40 E-value=0.0076 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
+|+|+|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.40 E-value=0.0097 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..+.|.|++|+|||||++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 466788999999999999999865
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.38 E-value=0.0084 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.++|+|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 449
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.35 E-value=0.0096 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchhHHHHHHhC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+.|.|++|+|||||++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999865
No 450
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.33 E-value=0.0073 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.|+|+|++|+||||+-+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988843
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.33 E-value=0.01 Score=49.06 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.8
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+....+|.|+|+||+||+|.-..|..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456677788999999999999888853
No 452
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.32 E-value=0.031 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
+-..|+|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44567899999999999999775
No 453
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.30 E-value=0.01 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
...++|.|.+|+||||+-+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998843
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.28 E-value=0.011 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+..|+|+|++|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999853
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.25 E-value=0.0094 Score=51.18 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.0
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+..+..+.|.|+||+|||+|.++|.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4566778889999999999999999763
No 456
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.24 E-value=0.013 Score=53.36 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred hhhhhhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 128 EEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 128 ~l~~~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.++++...+.+|..+.|.|+||+|||||+..++.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3555666788999999999999999999887754
No 457
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.19 E-value=0.0081 Score=51.92 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.4
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+++..+ +..++++|++|+||||+++.|++
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 333434 77889999999999999999974
No 458
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.17 E-value=0.022 Score=48.29 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.0
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++..+.|.|+||+||||+.+++.+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34567889999999999999999763
No 459
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.15 E-value=0.011 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCchhHHHHHHh
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
....|+|+|++|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999986
No 460
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.15 E-value=0.0099 Score=46.04 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
....+.|.|++|+|||++++.+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3556789999999999999988653
No 461
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.06 E-value=0.01 Score=50.51 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCchhHHHHHHhCC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...+.|+|+||+|||++.+.|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 356889999999999999999763
No 462
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.03 E-value=0.0085 Score=52.06 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 026174 142 VGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g 161 (242)
+.+.|+||+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.03 E-value=0.013 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.....++|+|.+|+||||+-+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999999999864
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.02 E-value=0.013 Score=46.71 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
.++|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999955
No 465
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.96 E-value=0.014 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
....|+|.|++|+||||+-+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998854
No 466
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.93 E-value=0.015 Score=46.37 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+.|.|++|+|||+|+.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999865
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.87 E-value=0.012 Score=49.28 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.++..|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678899999999999999999764
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.86 E-value=0.011 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
....|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998854
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.86 E-value=0.014 Score=48.58 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=19.2
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+|..|++.|++|+||||+++.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35688899999999999999999854
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.01 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+..++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999763
No 471
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.79 E-value=0.016 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchhHHHHHHhC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+.++|+||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.77 E-value=0.018 Score=47.27 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.|..|++.|++|+||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 477889999999999999999854
No 473
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.76 E-value=0.025 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~ 162 (242)
+.|+|+||+|||+|.++|.+.
T Consensus 52 vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 779999999999999999763
No 474
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.75 E-value=0.015 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchhHHHHHHhCC
Q 026174 141 AVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+.|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999764
No 475
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.73 E-value=0.019 Score=48.32 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
...+..+.|.|+||+|||+|.+++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 355666889999999999999999753
No 476
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.70 E-value=0.0048 Score=57.24 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=22.8
Q ss_pred hhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 132 ~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
+...+.+| ..+|+|+||+|||||+.+|.
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34566677 56699999999999999984
No 477
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.68 E-value=0.033 Score=45.97 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.....+.|.|+||+|||++.+++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455678999999999999999965
No 478
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.68 E-value=0.024 Score=43.06 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.7
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
..+..+.+.|++|+|||++...|...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 44566789999999999999999653
No 479
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.67 E-value=0.018 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchhHHHHHHhC
Q 026174 140 VAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 140 ~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+.|.|++|+|||||++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 5788999999999999998864
No 480
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.66 E-value=0.025 Score=48.97 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=25.0
Q ss_pred hhhhhccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 131 EVKEEDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 131 ~~~~~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
.+..-+.+|..+.|.|+||+|||||...++
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344567889999999999999999977664
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.66 E-value=0.018 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhHHHHHHhC
Q 026174 141 AVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 141 ~v~lvG~sgvGKSTLin~L~g 161 (242)
++.++|+||+||+|.-..|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999888854
No 482
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.65 E-value=0.0097 Score=52.77 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=19.7
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHh
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMV 160 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~ 160 (242)
...+|. .+|+|+||+||||++.+|.
T Consensus 22 ~f~~gl-~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 22 KFEKGI-VAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp ECCSEE-EEEEECTTSSHHHHHHHHH
T ss_pred ecCCCe-EEEECCCCCCHHHHHHHHH
Confidence 334444 4599999999999999884
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.63 E-value=0.018 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..|++.|.+|+||||+.+.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999965
No 484
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.57 E-value=0.022 Score=50.48 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.6
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.-+++|..+.|.|+||+|||||+..++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999988864
No 485
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.56 E-value=0.019 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.9
Q ss_pred hccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 135 ~~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+.+|.+++|+|++|+|||||+|.|..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHh
Confidence 345677889999999999999998865
No 486
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.55 E-value=0.048 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+...+.|.|+||+|||+|.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 4456678999999999999999975
No 487
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.017 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHhCC
Q 026174 142 VGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g~ 162 (242)
+.+.|+||+||||+++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.50 E-value=0.021 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
....+.++|+||+||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999865
No 489
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.49 E-value=0.015 Score=56.90 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred hhccCCcEEEEEcCCCCchhHHHHHHhCCc
Q 026174 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (242)
Q Consensus 134 ~~~~~~~~v~lvG~sgvGKSTLin~L~g~~ 163 (242)
..+.++..++|+|+||+|||||.++|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456788889999999999999999998853
No 490
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.43 E-value=0.024 Score=44.90 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.2
Q ss_pred EEEEcCCCCchhHHHHHHhC
Q 026174 142 VGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 142 v~lvG~sgvGKSTLin~L~g 161 (242)
+.|.|++|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998865
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.39 E-value=0.023 Score=47.47 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.4
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..|++.|++|+||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999854
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.36 E-value=0.024 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+|..|++.|++|+||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999999854
No 493
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.36 E-value=0.024 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+|..|++.|++|+||||+++.|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999965
No 494
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.34 E-value=0.027 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+..++|+|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566889999999999999998764
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.29 E-value=0.028 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..|++.|.+|+||||+.+.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999999865
No 496
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.21 E-value=0.018 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCchhHHHHHHhC
Q 026174 139 SVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 139 ~~~v~lvG~sgvGKSTLin~L~g 161 (242)
+..+.|.|++|+|||||++.|.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45577999999999999999975
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.18 E-value=0.057 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
.+...+.|.|+||+|||+|.+++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3455688999999999999999965
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.12 E-value=0.032 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.5
Q ss_pred ccCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 136 ~~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
++....+.+.||||+||||+..+|+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 44444578999999999999887765
No 499
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.08 E-value=0.024 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCchhHHHHHHhCC
Q 026174 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (242)
Q Consensus 138 ~~~~v~lvG~sgvGKSTLin~L~g~ 162 (242)
.+..++++|++|+||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3556789999999999999999763
No 500
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.03 E-value=0.03 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.5
Q ss_pred cCCcEEEEEcCCCCchhHHHHHHhC
Q 026174 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (242)
Q Consensus 137 ~~~~~v~lvG~sgvGKSTLin~L~g 161 (242)
..+..+.|.|+||+|||++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455688999999999999987754
Done!