BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026175
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1
SV=2
Length = 246
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/225 (84%), Positives = 212/225 (94%)
Query: 18 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
QRT PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEIS
Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81
Query: 78 DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
DFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG
Sbjct: 82 DFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNG 141
Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRD
Sbjct: 142 KSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRD 201
Query: 198 RSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 242
RSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct: 202 RSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246
>sp|Q3T108|PSB4_BOVIN Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1
Length = 264
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 152/214 (71%), Gaps = 2/214 (0%)
Query: 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASG 74
PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS R++++ RI + ++LGASG
Sbjct: 41 SPITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASG 100
Query: 75 EISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV 134
+ +DFQ L + L ++++ + + DG+S PK +HS+LTR MY+RR+K +PLWN++V+GG
Sbjct: 101 DYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGY 160
Query: 135 KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRV 192
+G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E+CMRV
Sbjct: 161 ADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRV 220
Query: 193 LLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
L YRD + N+ QIA +TE+G I P + +T W
Sbjct: 221 LYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254
>sp|P34067|PSB4_RAT Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1
SV=2
Length = 263
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 152/219 (69%), Gaps = 2/219 (0%)
Query: 10 LVGPNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSL 69
+ P PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++
Sbjct: 35 MSAPARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTM 94
Query: 70 LGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSL 129
LGASG+ +DFQ L + L ++++ + ++ DG+S P+ +HS+LTR MY+RR+K +PLWN+
Sbjct: 95 LGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTK 154
Query: 130 VLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLE 187
V+GG G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E
Sbjct: 155 VIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVE 214
Query: 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
+CMRVL YRD + N+ Q+A +TE+G I P + +T W
Sbjct: 215 RCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253
>sp|P28070|PSB4_HUMAN Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4
Length = 264
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 151/213 (70%), Gaps = 2/213 (0%)
Query: 16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG+
Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGD 101
Query: 76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
+DFQ L + L ++++ + + DG+S P+ +HS+LTR MY+RR+K +PLWN++V+GG
Sbjct: 102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161
Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
+G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + L+E+CMRVL
Sbjct: 162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 221
Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
YRD + N+ QIA +TE+G I P + +T W
Sbjct: 222 YYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254
>sp|P99026|PSB4_MOUSE Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1
Length = 264
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 151/213 (70%), Gaps = 2/213 (0%)
Query: 16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
PI RTQ P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++LGASG+
Sbjct: 42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGD 101
Query: 76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
+DFQ L + L ++++ + + DG+S P+ +HS+LTR MY+RR+K +PLWN++V+GG
Sbjct: 102 YADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA 161
Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
+G+ +LG V M+GV +E +ATG+G +LA+P+LR+ E LS + +L+E+CMRVL
Sbjct: 162 DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVL 221
Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
YRD + N+ QIA +TE+G I P + +T W
Sbjct: 222 YYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254
>sp|P28024|PSB4_XENLA Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis
GN=psmb4 PE=2 SV=2
Length = 242
Score = 207 bits (526), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 152/213 (71%), Gaps = 2/213 (0%)
Query: 16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
P++ T P VTGTSV+ +K+ G+++AADM GSYGS R++++ RI + ++++LGASG+
Sbjct: 20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGD 79
Query: 76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK 135
+D+Q L + +D++++ + + DG++ PK +HS+LTRVMYNRR+K +PLWN++V+GG
Sbjct: 80 YADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFY 139
Query: 136 NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVL 193
NG+ +LG V +GV +E +ATGFG +LA+P+LR+ E LS E+ +L+++CM+VL
Sbjct: 140 NGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVL 199
Query: 194 LYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
YRD + N+ +I +TE G + P + +T W
Sbjct: 200 YYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232
>sp|Q556Q0|PSB4_DICDI Proteasome subunit beta type-4 OS=Dictyostelium discoideum
GN=psmB4-1 PE=3 SV=1
Length = 259
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 143/210 (68%), Gaps = 2/210 (0%)
Query: 18 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
Q+T P VTGTSV+A+KY G++M +DM SYGS R+ S ER+K G ++++GASGE S
Sbjct: 35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYS 94
Query: 78 DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
DFQ + L++L+ D+ DDG+ L +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G
Sbjct: 95 DFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGG 154
Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLY 195
+ +LG V ++G ++D + TG+G+H+A P+LR E N++ E +L++ C+RVL Y
Sbjct: 155 KSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFY 214
Query: 196 RDRSAVNKLQIAKITEEGTTISQPYALKTF 225
RD + K+QI+ EEG IS P L TF
Sbjct: 215 RDARSSKKIQISVAGEEGIEISGPIELDTF 244
>sp|Q9USQ9|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC577.10 PE=3 SV=1
Length = 262
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 8/224 (3%)
Query: 16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
PIQRT P VTG+SV+ALK+ DG+++AAD SYGS R+ VER+ +G ++++GA G+
Sbjct: 32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGD 91
Query: 76 ISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV- 134
ISD+Q++ R L++L + + + DG +L P +H YL++V+Y RRNK DP WN L++ GV
Sbjct: 92 ISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVD 151
Query: 135 -KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKLLEK 188
+N + Y+ + G + +ATGF HLA P+LR D W + LS E +++
Sbjct: 152 GENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDE 210
Query: 189 CMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQ 232
CMRVL YRD ++NK +A IT EG ++ + W F Q
Sbjct: 211 CMRVLFYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEKQ 254
>sp|P30657|PSB7_YEAST Proteasome subunit beta type-7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE4 PE=1 SV=1
Length = 266
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 10/204 (4%)
Query: 16 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGE 75
P+ TQ P VTGTSV+++KY +G+++AAD GSYGS +R+ VER+ P+G ++++G SG+
Sbjct: 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89
Query: 76 ISDFQELLRNLDELIL---YDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVL 131
ISD Q + R L +L+ YDN + D +L P + YL VMY RR+K +PLWN++++
Sbjct: 90 ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 149
Query: 132 GGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW-HENLSYEDGVKLLEK- 188
GV+ NG ++L V+++GV + +ATGFG H+A P+LR E+ + V++ E+
Sbjct: 150 AGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEA 209
Query: 189 ---CMRVLLYRDRSAVNKLQIAKI 209
MRVL YRD + +A I
Sbjct: 210 IVNAMRVLYYRDARSSRNFSLAII 233
>sp|Q9VNA5|PSB4_DROME Proteasome subunit beta type-4 OS=Drosophila melanogaster
GN=Prosbeta7 PE=2 SV=1
Length = 268
Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 30 VVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDEL 89
V+ ++Y G+++AAD SYGS RY+++ER+ + K+ LLG SG+ +D Q + RN+D+
Sbjct: 60 VLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQK 119
Query: 90 ILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIG 148
++ D DD + PK L S++TRV+YNRR++ +PL+ +V+GGV N G YL V + G
Sbjct: 120 MIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRG 179
Query: 149 VNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLYRDRSAVNKLQI 206
++ED VATGF HLA P++R++ ++ + + +L+ CM VL YRD +++ +
Sbjct: 180 RSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTV 239
Query: 207 AKITEEGTTISQPYALKTFWGF 228
+ G + P+ + W F
Sbjct: 240 GVCSVNGCGVEGPFQVNENWTF 261
>sp|Q8SS01|PSB7_ENCCU Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE4 PE=1 SV=1
Length = 235
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 124/216 (57%), Gaps = 18/216 (8%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
+VTGT+VV+ +Y+DGI+M AD GSYG + V+RI +G +LLG SGEISD Q L+
Sbjct: 13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLV 72
Query: 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG------ 137
+ L L DN D PK H + R++Y+ R+K PL S+ +GG+
Sbjct: 73 KTLTILTQEDNRRID-----PKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRR 127
Query: 138 ----QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH---ENLSYEDGVKLLEKCM 190
+K LG V+ +G + V TG G +L P LR+ E ++ E+ + L+E+ M
Sbjct: 128 THTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAM 187
Query: 191 RVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 226
R+L YRD +A N++Q+ + ++G IS PY +KT W
Sbjct: 188 RILCYRDCNASNEIQVGYVDDQGVHISDPYQIKTNW 223
>sp|Q29384|PSB4_PIG Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4
PE=2 SV=1
Length = 154
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 83/114 (72%)
Query: 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASG 74
PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG
Sbjct: 41 SPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASG 100
Query: 75 EISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 128
+ +DFQ L + L ++++ + + DG+S PK +HS+LTR MYNRR K +PLW +
Sbjct: 101 DYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V L K+G+++AAD S G+ I K+V +I I +H + +G++ D L+R L
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 87 D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
E LY + G + K L + L ++ +K+ P ++GG + L V
Sbjct: 70 KAEANLYKSTV--GKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVD 124
Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
M+G ED++ A G G A IL E+ E +S DG+KL K + V + RD + L
Sbjct: 125 MVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLL 184
Query: 206 IAKITEEG 213
+ IT++G
Sbjct: 185 VVTITKDG 192
>sp|A6VK02|PSB_METM7 Proteasome subunit beta OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmB PE=3 SV=1
Length = 219
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V L KDG+++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLI 70
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKY 140
R + E +Y GN++ P + ++ V++ R+ PL L+LGG + NG K
Sbjct: 71 RLISAEAKIYK--MRTGNNMTPLSCTTLISNVLHGNRHY--PLLTQLILGGYDLINGAKL 126
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
+ + G+N E S ATG G+ A +L E+ +++ + G+ + K + + RD +
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYS 186
Query: 201 VNKLQIAKITEEGTTISQPYALKTFWGF 228
N + +A I ++G I Y+ + GF
Sbjct: 187 GNGISLAHINKDGVNI---YSDEEIEGF 211
>sp|A9A788|PSB_METM6 Proteasome subunit beta OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmB PE=3 SV=1
Length = 219
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V L KDG+++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLI 70
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKY 140
R + E +Y GN++ P + ++ V++ R+ PL L+LGG + NG K
Sbjct: 71 RLISAEAKIYK--MRTGNNMTPLSCTTLISNVLHGNRHY--PLLTQLILGGYDLINGAKL 126
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
+ + G+N E S ATG G+ A +L E+ +++ + G+ + K + + RD +
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYS 186
Query: 201 VNKLQIAKITEEGTTISQPYALKTFWGF 228
N + +A I ++G I Y+ + GF
Sbjct: 187 GNGISLAHINKDGVNI---YSDEEIEGF 211
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 6/188 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V + KDG+++AAD S G+ I ++V +I I +H + +G++ D L+R L
Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 87 -DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
E LY + G + K L + L +M K+ P ++GG K L V
Sbjct: 70 RAEAKLYYS--QSGKRMSVKALATLLANIM--NGAKYFPYLAWFLVGGYDEKPK-LYSVD 124
Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
M+G ED + G G A IL E+ +NL+ E+G+KL K + + RD + + +
Sbjct: 125 MVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGIL 184
Query: 206 IAKITEEG 213
+ IT+EG
Sbjct: 185 VVTITKEG 192
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 101/193 (52%), Gaps = 7/193 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V L D +++A D S G+ I K +++ I + + +G + D Q ++R L
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRAL 65
Query: 87 -DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKYLGM 143
E LY G ++ P+ + L+ ++++ R P +++GG + +G K +
Sbjct: 66 IAEARLYK--MRTGKNISPRACATLLSNILHSSR--MFPFLTQIIIGGYDLTDGPKLFSL 121
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
+ G+N E + +TG G+ +A +L E+ ++S E+G+KL K ++ + RD + N
Sbjct: 122 DPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGNG 181
Query: 204 LQIAKITEEGTTI 216
+ +A IT+EG +
Sbjct: 182 VSVAVITKEGVKL 194
>sp|Q6LZD4|PSB_METMP Proteasome subunit beta OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmB PE=3 SV=1
Length = 219
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V L DG+++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGLLCNDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLI 70
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKY 140
R + E +Y GN++ P + ++ V++ R+ PL L+LGG + NG K
Sbjct: 71 RLISAEAKIYK--MRTGNNMTPLSCTTLISNVLHGNRHY--PLLTQLILGGYDLINGAKL 126
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
+ + G+N E S ATG G+ A +L E+ +++ E G+ + K + + RD +
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLESEYKSDIAIEKGLLIAVKALSSAMQRDAYS 186
Query: 201 VNKLQIAKITEEGTTISQPYALKTFW 226
N + +A I ++G + ++ F
Sbjct: 187 GNGISLAHINKDGVKLYSDAEIEGFL 212
>sp|A4FYA5|PSB_METM5 Proteasome subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmB PE=3 SV=1
Length = 219
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V L KDG+++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLI 70
Query: 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKYL 141
R + M GN++ P + ++ V++ R+ PL L+LGG + NG K
Sbjct: 71 RIISAEAKIHKMRT-GNNMTPLSCTTLISNVLHGNRHY--PLLTQLILGGYDLINGAKLF 127
Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
+ + G+N E S ATG G+ A +L E+ +++ + G+ + K + + RD +
Sbjct: 128 SLDPVGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYSG 187
Query: 202 NKLQIAKITEEGTTISQPYALKTFW 226
N + +A I ++G + ++ F
Sbjct: 188 NGISLAHINKDGVKLYSDAEIEGFL 212
>sp|C6A3R1|PSB2_THESM Proteasome subunit beta 2 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB2 PE=3 SV=1
Length = 199
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K KDG+++AAD S + ++++I PI + +G + D Q L R
Sbjct: 5 TGTTTVGIKLKDGVVLAADTQASLDHMVETLNIKKILPITDRIAITTAGSVGDLQALARM 64
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L+ E Y W G + K + + L+ ++ +K+ P +++GG +
Sbjct: 65 LEAEAKYYQFTW--GKPMTAKAMANLLSNIL--NESKWFPYMVQIIIGGYVEEPTLASLD 120
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNK 203
+ G+ F D++ TG G+ A IL D + E++S ED +L K +R RD + K
Sbjct: 121 PLGGLIF-DNYTTTGSGSPFAIAILEDGYKEDMSIEDARELAIKAVRTAGKRDVYTGERK 179
Query: 204 LQIAKITEEG 213
+Q+ IT+EG
Sbjct: 180 IQVITITKEG 189
>sp|A6USJ3|PSB_METVS Proteasome subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmB PE=3 SV=1
Length = 219
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V L +DG+++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGLICEDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLI 70
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKY 140
R L E +Y GN++ P + + V++ R+ PL L++GG + NG K
Sbjct: 71 RLLSAEAKIYK--MRTGNNMTPLSCTTLTSNVLHGNRHY--PLLTQLIIGGYDLINGPKL 126
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
+ + G+N E S ATG G+ A +L E+ ++ E G+ + K + + RD +
Sbjct: 127 FSLDPVGGINEESSFTATGSGSPTAYGVLEAEYKSEINIEKGLLIAVKALISAMQRDAYS 186
Query: 201 VNKLQIAKITEEGTTI 216
N + +AKI + G T+
Sbjct: 187 GNGISLAKIDKTGVTL 202
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V L D +++A D S G+ + K +++ I + L +G + D Q ++R L
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRLL 65
Query: 87 D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKYLGM 143
E LY G ++ P + L+ ++++ N++ P L++GG + G K +
Sbjct: 66 TAEAKLYK--MRTGKNISPLACATLLSNILHS--NRYFPFLTQLIIGGYDLLEGAKLFSL 121
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
+ G+N E + ATG G+ +A +L + ++ E+G+KL K ++ + RD + N
Sbjct: 122 DPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMPVEEGIKLALKALKSAMERDTYSGNG 181
Query: 204 LQIAKITEEGTTI 216
+ +A IT+EG I
Sbjct: 182 ISLAVITKEGVKI 194
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 104/192 (54%), Gaps = 6/192 (3%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
++ GT+ V + DG+++A + + G+ I K+ ++I I + +G + D Q+L+
Sbjct: 6 HLKGTTTVGIVCSDGVVLATEKRATMGNFIASKTAKKIYQIDDLVGMTTAGSVGDAQQLV 65
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYL 141
R + E LY + S+ K L + L+ ++ +R + PL L++GGV KNG
Sbjct: 66 RMISVESKLYKMRRQE--SITIKGLTTLLSNILGGQR--YFPLMVQLLVGGVDKNGPAIF 121
Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
+ +M G E VATG G+ +A +L D +HE ++ ++G++L + + + RD ++
Sbjct: 122 SLDAMGGNIEETKAVATGSGSPMAYGVLEDRYHEGINVDEGMELAVRALYNAMKRDSASG 181
Query: 202 NKLQIAKITEEG 213
N + + KIT +G
Sbjct: 182 NGIDVVKITADG 193
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V + KDG++ A++ S G+ + +K E+I I H + +G + D Q L++ +
Sbjct: 8 GTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNLMKII 67
Query: 87 D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
+ E+ LY +D S+ K S ++ + P++ +LGG+ + L +
Sbjct: 68 EAEVSLYQMRNNDKISV--KAAASVTANIL-----RSGPMYVQTLLGGMDGDKPSLYSLD 120
Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
G ED++++TG G+ +A +L D +HE ++ ++G+++ + ++ RD + N
Sbjct: 121 PAGGMIEDTYISTGSGSIVAYGVLEDRYHEEITTDEGLEIAVRAIKAASERDTFSGNGYL 180
Query: 206 IAKITEEG 213
+AK+T++G
Sbjct: 181 VAKVTKDG 188
>sp|B6YXV3|PSB2_THEON Proteasome subunit beta 2 OS=Thermococcus onnurineus (strain NA1)
GN=psmB2 PE=3 SV=1
Length = 200
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 33 LKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELIL 91
+K KDGI++AAD S G + ++ +I PI + +G + D Q L R L+ E
Sbjct: 13 IKAKDGIVLAADTQASLGHMVETLNIRKIIPITDRIAITTAGSVGDVQALARMLEAEARY 72
Query: 92 YDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNF 151
Y W G + K + + L+ ++ NK+ P ++LGG + + G+ F
Sbjct: 73 YQFTW--GKPMSTKAMANLLSNILNG--NKWFPYLVQIILGGYVEEPTLANLDPLGGLIF 128
Query: 152 EDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKIT 210
+D + ATG G+ A +L D + +++S E+ +L + +R RD + K+QI IT
Sbjct: 129 DD-YTATGSGSPFAIAVLEDGYKKDMSIEEAKELAVRAVRTAGKRDVYTGSRKIQIVAIT 187
Query: 211 EEGTT 215
+EG T
Sbjct: 188 KEGIT 192
>sp|C5A2D5|PSB2_THEGJ Proteasome subunit beta 2 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB2 PE=3 SV=1
Length = 200
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 7/190 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K K+G+++AAD S G+ + ++ +I PI + +G + D Q L R
Sbjct: 6 TGTTTVGIKVKEGVVLAADTQASLGNMVETLNIRKILPITDRIAITTAGSVGDVQALARM 65
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L+ + Y W G + + + + L+ ++ NK+ P +++GG + + +
Sbjct: 66 LEAQARYYQFTW--GRPMTTRAMANLLSNIL--NENKWFPYMVQIIIGGYVDKPELASVD 121
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNK 203
++ G+ FE + ATG G+ A I+ D + E++S E+ +L + ++ RD + K
Sbjct: 122 ALGGLVFE-KYTATGSGSPFAIAIIEDGYREDMSIEEAKELAVRAVKTAGKRDVYTGERK 180
Query: 204 LQIAKITEEG 213
+Q+ IT++G
Sbjct: 181 VQVVVITKDG 190
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 6/188 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V + KDG+++AAD S G+ + K V ++ I H L +G + D L+R L
Sbjct: 7 GTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRLL 66
Query: 87 -DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
E+ LY G + K L + + +++ R F P + ++ G + L +
Sbjct: 67 RAEVKLYRAKV--GREISVKALATLTSNILHGSR--FMPYFGWFLIAGYDE-KPALYSLD 121
Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
M G ED A G G LA +L D + ++++ E+GVKL K +++ RD + +
Sbjct: 122 MAGGVTEDKFTAAGSGMELAFAVLEDGYKDDINVEEGVKLALKAIKIATRRDVFTGDGIT 181
Query: 206 IAKITEEG 213
+ +TEEG
Sbjct: 182 LVTVTEEG 189
>sp|Q4JAY3|PSB1_SULAC Proteasome subunit beta 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=psmB1 PE=3 SV=1
Length = 195
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
+ + +K KDG+++AA+ SYG + KS ++ +G+ + GA G + D Q L R ++
Sbjct: 6 ATAIGIKTKDGVVLAAERRLSYGDFVLSKSARKVFKLGRFGIAGA-GIVGDIQTLTRIMN 64
Query: 88 ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
I Y M++ + + L+ ++Y +NK P + L+ GGV L ++ I
Sbjct: 65 VEIKYYEMYNS-RKISARAAAKLLSVILY--QNKVLPYISELLFGGVDEDGPKLFILDPI 121
Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
G EDS+ A G G +A +L E++E+L+ E +L K M+ + RD
Sbjct: 122 GSLIEDSYAAVGSGARVAIGVLEAEYNESLTSEAAKELAIKSMKSAVERD 171
>sp|A4YJ04|PSB2_METS5 Proteasome subunit beta 2 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmB2 PE=3 SV=1
Length = 196
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 98/186 (52%), Gaps = 4/186 (2%)
Query: 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
++ V ++ +DG+++ A SYG + KS +++ PI + + G +G D Q L R ++
Sbjct: 6 STAVGIRLQDGVILGAVRRLSYGGYVLSKSAKKVFPISRFGI-GGAGLFGDLQALTRIMN 64
Query: 88 ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
I Y ++++ + + L+ ++Y + K+ P + ++ GGV NG+ L ++ +
Sbjct: 65 ANIKYYELYNN-RPISTRAAAKLLSIILY--QYKYMPFISEVLFGGVDNGEPQLYVLDPL 121
Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
G +D + A G G +A +L E+ E L+ G +L K +R RD ++ + + I
Sbjct: 122 GSLLDDIYAAVGSGARVAIGVLEAEYSEKLTLTQGRELTIKSLRASAERDVTSGDGIDIL 181
Query: 208 KITEEG 213
I+++G
Sbjct: 182 TISKDG 187
>sp|O57983|PSB1_PYRHO Proteasome subunit beta 1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K KDG+++AAD S + ++ +I PI + +G + D Q + R
Sbjct: 5 TGTTTVGIKVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARI 64
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L+ E Y W G + K + + L+ ++ NK+ P +++GG + +
Sbjct: 65 LEAEARYYYFAW--GRPMTTKAMANLLSNIL--NENKWFPYLVQIIIGGYVDEPTIANLD 120
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNK 203
G+ F D++ ATG G A IL + + ENL E+ +L K ++ RD + K
Sbjct: 121 PYGGLIF-DNYTATGSGTPFAIAILEEGYKENLGIEEAKELAIKAIKAAGSRDVYTGSKK 179
Query: 204 LQIAKITEEG 213
+Q+ IT+EG
Sbjct: 180 VQVVTITKEG 189
>sp|Q18GX3|PSB_HALWD Proteasome subunit beta OS=Haloquadratum walsbyi (strain DSM 16790)
GN=psmB PE=3 SV=1
Length = 243
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 7/194 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V LK +DG ++A DM S G + K V++++ I L +G +S Q L+ +
Sbjct: 48 TGTTTVGLKTQDGTVLATDMRASLGRMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISS 107
Query: 86 L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
+ E+ LY+ G + + L + L + R F +LGGV + ++ +
Sbjct: 108 IRAEVRLYEARR--GEDMSMEALSTLLGNFL--RSGGF--FIVQPILGGVDDDGPHIYSI 161
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
G E+ + TG G+ A +L +++E+LS E+ + + + + RD ++ N +
Sbjct: 162 DPAGSIIEEEYTVTGSGSQYALGVLEQQYNEDLSIEEAKTVAARSIESAVERDLASGNGI 221
Query: 205 QIAKITEEGTTISQ 218
+ +TE+G I+Q
Sbjct: 222 NVCVVTEDGVEITQ 235
>sp|Q8U4C9|PSB1_PYRFU Proteasome subunit beta 1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB1 PE=3 SV=1
Length = 196
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K KDG+++AAD S + ++++I PI + +G + D Q L R
Sbjct: 5 TGTTTVGIKVKDGVVLAADTQASLDHMVETLNIKKIIPITDRIAITTAGSVGDVQMLARY 64
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L+ E Y W G + K + + L+ ++ N++ P +++GG + +
Sbjct: 65 LEAEARYYYFTW--GRPMTTKAMANLLSNIL--NENRWFPYLVQIIIGGYVDEPTIANLD 120
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNK 203
G+ F+D + ATG G A +L + + E+L+ E+ +L + +R RD + K
Sbjct: 121 PFGGLIFDD-YTATGSGTPFAIAVLEEGYREDLTIEEAKELAIRAVRAAGRRDVYTGSKK 179
Query: 204 LQIAKITEEG 213
+Q+ IT++G
Sbjct: 180 VQVVTITKDG 189
>sp|Q9HR36|PSB_HALSA Proteasome subunit beta OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=psmB PE=3 SV=2
Length = 243
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGS-TIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84
TGT++V L +DG+LMA+DM S G I K+V++++ I ++ L SG + Q +R
Sbjct: 47 TGTTIVGLTTQDGVLMASDMRASLGGRVISNKNVQKVEEIQPNAALSISGSVGGAQSFIR 106
Query: 85 NL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSL-VLGGVKNGQKYLG 142
+L E LY+ G + L + + ++ + P + + +LGGV + ++
Sbjct: 107 SLRAEANLYEARR--GEYMSIDALSTMASNLL-----RGGPFFRVVPILGGVDDDGGHVF 159
Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
+ G + D++ A G G A +L E+ E+L+ D ++ ++ RD ++ N
Sbjct: 160 SLDPAGSSMSDTYTAQGSGMPYALGVLEQEYSEDLTMADAEQVAAHAVKSASERDTASGN 219
Query: 203 KLQIAKITEEGTT 215
+ I KIT +G T
Sbjct: 220 GIHITKITHDGLT 232
>sp|B0R4C8|PSB_HALS3 Proteasome subunit beta OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=psmB PE=3 SV=1
Length = 243
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGS-TIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84
TGT++V L +DG+LMA+DM S G I K+V++++ I ++ L SG + Q +R
Sbjct: 47 TGTTIVGLTTQDGVLMASDMRASLGGRVISNKNVQKVEEIQPNAALSISGSVGGAQSFIR 106
Query: 85 NL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSL-VLGGVKNGQKYLG 142
+L E LY+ G + L + + ++ + P + + +LGGV + ++
Sbjct: 107 SLRAEANLYEARR--GEYMSIDALSTMASNLL-----RGGPFFRVVPILGGVDDDGGHVF 159
Query: 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVN 202
+ G + D++ A G G A +L E+ E+L+ D ++ ++ RD ++ N
Sbjct: 160 SLDPAGSSMSDTYTAQGSGMPYALGVLEQEYSEDLTMADAEQVAAHAVKSASERDTASGN 219
Query: 203 KLQIAKITEEGTT 215
+ I KIT +G T
Sbjct: 220 GIHITKITHDGLT 232
>sp|B9LTS6|PSB_HALLT Proteasome subunit beta OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=psmB PE=3 SV=1
Length = 243
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K DG++MA DM S G + K V++++ + L +G +S Q L+
Sbjct: 48 TGTTTVGIKTADGVVMATDMRASLGGMVSSKDVQKVEEVHPRGALTIAGSVSAAQNLIST 107
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L E LY+ G + + L + ++ R F + +LGGV + ++ +
Sbjct: 108 LKAETSLYETRR--GKDMSMEALSTLTGNLL--RSGAFYIVQP--ILGGVDDEGSHIYSI 161
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
+G E+ + TG G+ A +L E+ ++++ ++ + K ++ + RD ++ N +
Sbjct: 162 DALGGTTEEEYTVTGSGSQYALGVLEQEYDDDVTVDEAKTMAAKAIQSAVERDLASGNGI 221
Query: 205 QIAKITEEGTTISQ 218
+A +T++G I++
Sbjct: 222 NVAVVTDDGVDITR 235
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V + DG+++AAD S G+ + K+V +I I +H + +G++ D L+R L
Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 87 -DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVS 145
E LY G + K L + L ++ R P ++GG + L V
Sbjct: 70 RAEAKLY--YAQSGKRMSVKALATLLANMLNGAR--MLPYLAWFLVGGFDEKPR-LYSVD 124
Query: 146 MIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQ 205
M+G ED +VA G G A +L E+ E+L +G+K+ + + + RD + + +
Sbjct: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
Query: 206 IAKITEEG 213
+ ITEEG
Sbjct: 185 VVTITEEG 192
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 100/188 (53%), Gaps = 4/188 (2%)
Query: 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
+ + +K DGI++AA+ SYG + +S +++ IG+ + GA G + D Q L R ++
Sbjct: 6 ATALGIKLNDGIILAAERRLSYGGFVLSRSAKKVFKIGRFGIAGA-GIMGDIQTLTRLMN 64
Query: 88 ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
I Y M+++ + K L+ ++Y + K+ P + L+ GGV + L ++ I
Sbjct: 65 VEIKYYEMYNN-KPISVKAAAKLLSVILY--QYKWTPFISELLFGGVDDEGPKLFVLDPI 121
Query: 148 GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIA 207
G ED++ A G G +A +L E+ +++ + G +++ K ++ + RD ++ + + I
Sbjct: 122 GSLIEDNYAAVGSGARVAIGVLESEYDPSMNLDKGKEIVLKALKAAIERDVTSGDGIDIL 181
Query: 208 KITEEGTT 215
I + T+
Sbjct: 182 TIKRDNTS 189
>sp|Q74MP5|PSB_NANEQ Proteasome subunit beta OS=Nanoarchaeum equitans (strain Kin4-M)
GN=psmB PE=3 SV=1
Length = 196
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 102/191 (53%), Gaps = 9/191 (4%)
Query: 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD 87
T+++ +K +DG+++A+D S G+ + K ++I PI + LL SG ++D Q + + L
Sbjct: 2 TTIIGIKARDGVVLASDKQASMGNIVEDKRAQKIIPITDYILLAGSGTVADLQHIAKILK 61
Query: 88 ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMI 147
+ ++ ++ E + L+ ++Y R +PL L++ G N +++ G+ S+
Sbjct: 62 TELKLRELYSR-RTMNVIEAANLLSHLLYQNRFYLNPL--GLLIAGPINSKEF-GIYSLD 117
Query: 148 GV----NFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
G+ +D + A G G +A L E++ +++ D +KL EK ++ + RD +
Sbjct: 118 GIGAISEIKD-YFAEGSGGVIALGTLEAEYNPDITVRDAIKLAEKALKSSIARDVFSGYG 176
Query: 204 LQIAKITEEGT 214
++I IT++G
Sbjct: 177 IEIYTITKKGV 187
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 7/193 (3%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V L D +++A D S G+ + K +++ I + + +G + D Q ++R L
Sbjct: 6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLL 65
Query: 87 D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQKYLGM 143
E LY G ++ P + L+ ++++ R P +++GG + G K +
Sbjct: 66 TAEAKLYK--MRTGRNIPPLACATLLSNILHSSR--VFPFLTQIIIGGYDLLEGAKLFSL 121
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
+ G+N E + ATG G+ +A +L + +S E+G+KL ++ + RD + N
Sbjct: 122 DPLGGMNEEKTFTATGSGSPIAYGVLEAGYDREMSVEEGIKLAINALKSAMERDTFSGNG 181
Query: 204 LQIAKITEEGTTI 216
+ +A IT+EG I
Sbjct: 182 ISLAVITKEGVKI 194
>sp|Q9V247|PSB1_PYRAB Proteasome subunit beta 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB1 PE=3 SV=1
Length = 197
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V ++ KDG+++AAD S + ++ +I PI + +G + D Q + R
Sbjct: 5 TGTTTVGIRVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARI 64
Query: 86 LD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L+ E Y W G + + + + L+ ++ NK+ P +++GG + +
Sbjct: 65 LEAEARYYQFTW--GRPMTTRAMANLLSNIL--NENKWFPYLVQIIIGGYVDEPTIANLD 120
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD-RSAVNK 203
+ G+ F+D + ATG G A IL + + +NL E +L K ++ RD + K
Sbjct: 121 PLGGLIFDD-YTATGSGTPFAIAILEEGYRKNLGIEKAKELAIKAVKAAGARDVYTGSKK 179
Query: 204 LQIAKITEEG 213
+Q+ IT++G
Sbjct: 180 IQVVTITKDG 189
>sp|D4GYZ1|PSB_HALVD Proteasome subunit beta OS=Haloferax volcanii (strain ATCC 29605 /
DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmB PE=1 SV=1
Length = 243
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 7/194 (3%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V +K ++G+++A DM S G + K V++++ I L +G +S Q L+ +
Sbjct: 48 TGTTTVGIKTEEGVVLATDMRASMGYMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISS 107
Query: 86 L-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMV 144
L E+ LY+ G + + L + + + R F + +LGGV ++ +
Sbjct: 108 LRAEVRLYEARR--GEDMSMQALSTLVGNFL--RSGGFYVVQP--ILGGVDETGPHIYSI 161
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
G E+ + TG G+ A +L E+ + LS E+ + K +R + RD ++ N +
Sbjct: 162 DPAGSILEEEYTVTGSGSQYALGVLEQEFEDGLSIEEAKGVATKAIRSAVERDLASGNGI 221
Query: 205 QIAKITEEGTTISQ 218
IA +TE+G I +
Sbjct: 222 NIAVVTEDGVDIQR 235
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 22 LPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
L + GT+ V + KDG+++ AD S G+ + K V +I + H L +G + D
Sbjct: 4 LDKIKGTTTVGIVCKDGVVLTADRRASLGNMVISKGVTKIFQVDDHLALAGAGAVGDILS 63
Query: 82 LLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKY 140
L+R L E LY G + K L + + ++ R K+ P + ++GG + +
Sbjct: 64 LVRALRAESKLYRAKV--GKEMSTKALATLTSNILSGR--KYLPYFGWFLIGGY-DEKPS 118
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
L + M G ED +V+ G G A IL +E+ E ++ +GVKL K + + RD
Sbjct: 119 LYSIDMAGGITEDKYVSAGSGMEFAYSILDNEYSEKITLNNGVKLAIKAINAAIKRDVFT 178
Query: 201 VNKLQIAKITEEG 213
+ + + I EG
Sbjct: 179 GDGIMVVTIDREG 191
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
TGT+ V + + G+++A + + G+ I K +++ I + +G + D Q+L+R
Sbjct: 10 TGTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRI 69
Query: 86 LD-ELILYDNMWDDGNSLGPKE--LHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYL 141
++ E LY+ S+G L +YL +N+F P + L++GGV +G
Sbjct: 70 INVECNLYEIRRGQKISVGAAATILSNYL------NQNRFSPYYVQLLVGGVDTSGPSVY 123
Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
+ + G E++ V+TG G+ A +L D + N++ E+ ++L + +R + RD ++
Sbjct: 124 SVDAAGGATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASG 183
Query: 202 NKLQIAKITEE 212
+ IT+E
Sbjct: 184 EGYNVVIITQE 194
>sp|A6UT20|PSB_META3 Proteasome subunit beta OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=psmB PE=3 SV=1
Length = 217
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V + DGI++A D + G+ I K +++ I + + +G + D Q L+
Sbjct: 11 YMKGTTTVGIVCNDGIVLATDKRATMGNLIADKEAKKLYKIDDYMAMTIAGSVGDAQSLV 70
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK--NGQKY 140
R + E LY GN++ P L+ V++ R+ P L++GG +G K
Sbjct: 71 RIISAEANLYK--LRTGNNIPPHSCAMLLSNVLHGSRHF--PFLIQLIIGGYDTIHGAKL 126
Query: 141 LGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSA 200
+ ++ G+N E S ATG G+ A +L +E+ ++++ G L K + + RD +
Sbjct: 127 FSLDAVGGLNEETSFTATGSGSPTAFGVLEEEYKKDMTINKGKLLAIKSLTAAMKRDAFS 186
Query: 201 VNKLQIAKITEEGTTI 216
N + +A I + G I
Sbjct: 187 GNGISLAVIDKNGVKI 202
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 105/203 (51%), Gaps = 6/203 (2%)
Query: 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83
Y+ GT+ V + DGI++A++ + G I K+ +++ I + +G + D Q+L+
Sbjct: 6 YLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLV 65
Query: 84 RNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV-KNGQKYL 141
R + E LY D+ S+ K + + ++ + RN++ P+ L++GGV KNG
Sbjct: 66 RLVSVESQLYKMRRDE--SMTIKGITTLMSNFL--SRNRYYPMMVQLLIGGVDKNGPGIY 121
Query: 142 GMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAV 201
+ +M G E ATG G+ +A +L D++ EN++ ++G+ L + + RD ++
Sbjct: 122 SLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASG 181
Query: 202 NKLQIAKITEEGTTISQPYALKT 224
+ + IT+E P +K+
Sbjct: 182 ENIDVVVITKEAFKRLDPEEVKS 204
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 99/198 (50%), Gaps = 7/198 (3%)
Query: 22 LPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81
+ + GT+ V L D +++A D S G+ + K +++ I + + +G + D Q
Sbjct: 1 MDVMKGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQA 60
Query: 82 LLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGG--VKNGQ 138
++R L E LY G ++ P + L+ ++++ R P +++GG + G
Sbjct: 61 IVRLLIAEAKLYK--MRTGRNIPPLACATLLSNILHSSR--MFPFLTQIIIGGYDLLEGA 116
Query: 139 KYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDR 198
K + + G+N E + ATG G+ +A +L + ++S E+G+KL ++ + RD
Sbjct: 117 KLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDT 176
Query: 199 SAVNKLQIAKITEEGTTI 216
+ N + +A IT++G I
Sbjct: 177 FSGNGISLAVITKDGVKI 194
>sp|A4YIE0|PSB1_METS5 Proteasome subunit beta 1 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmB1 PE=3 SV=1
Length = 217
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 18 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEIS 77
+ ++ + GT+ V L KD +++AAD S G + K V +I I + +G ++
Sbjct: 12 SKDKIKILKGTTTVGLVVKDAVILAADRRASAGFFVANKMVRKIVYIDDRIGMTTAGSVA 71
Query: 78 DFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNG 137
D Q + N + I + N+ + K L +YLT ++ +NK+ P +++GG +
Sbjct: 72 DLQ-FIYNYMKNIYHYNLISGNRPVTVKSLATYLTNIL--SQNKYFPYLVQILMGGY-DT 127
Query: 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 197
Q L + +G E+++VATG G+ +A +L D + +L+ + + L + + + RD
Sbjct: 128 QPRLFNLDYLGDMTEETYVATGSGSPVAMGVLEDGYSPDLTGDQAMDLAARAVMSAIKRD 187
Query: 198 RSAVNKLQIAKITEEG 213
+ + KIT+EG
Sbjct: 188 SFTGTGVIVTKITKEG 203
>sp|A1RWY6|PSB1_THEPD Proteasome subunit beta 1 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB1 PE=3 SV=1
Length = 200
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86
GT+ V L KD +++AAD + G I K +I I H +G + D Q+L+ L
Sbjct: 12 GTTTVGLVGKDFVVLAADRRATAGYFIANKQTWKIVEIDSHIAATIAGTVGDAQQLVDRL 71
Query: 87 D-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWN-SLVLGGVKNGQKYLGMV 144
E Y + G+S+ K + + + +++ R P+ + +++GGV + L V
Sbjct: 72 RVEARYYKTI--TGDSMPVKSVATLASLILFQYR----PILSVQMLIGGVDSDGPSLFSV 125
Query: 145 SMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKL 204
+G + + ATG G+ A +L E+ E+LS E+ V L K + + L RD + +
Sbjct: 126 DWLGTVTREKYTATGSGSPYAVSLLEHEYREDLSLEEAVNLAVKAVNIALARDPGSGEGV 185
Query: 205 QIAKITEEG 213
IA IT+EG
Sbjct: 186 DIATITKEG 194
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
Query: 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85
+GT+ V L D +++AAD + G I + V++I + + + SG ++D Q L
Sbjct: 24 SGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDV 83
Query: 86 LDELILYDNMWDDGNSLGP--KELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGM 143
L E I +++ N + P + + S L+ ++++ +KF P L++GG + Q L
Sbjct: 84 LREEI---RLYEMTNKVKPSVRFVASLLSNILFS--SKFFPYIVQLIVGG-YDTQPRLYT 137
Query: 144 VSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK 203
+ + G ED + ATG G+ +A +L + + E+LS E+ +K+ +R + RD ++ +
Sbjct: 138 LDLFGSITEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASGDG 197
Query: 204 LQIAKITEEG 213
+ I +G
Sbjct: 198 ADVVVIGPQG 207
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 97/190 (51%), Gaps = 3/190 (1%)
Query: 29 SVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDE 88
+V+ +K +G+++A + +Y + K+ ++ PI KH +G +G + D Q ++R L
Sbjct: 19 TVLGIKAVNGVVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRAL-R 77
Query: 89 LILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIG 148
+ + G + + L L+ ++Y+ K PL +V+GG + ++ +G
Sbjct: 78 MEAENYELQLGREIRVRGLAKILSLILYS--YKLAPLMTEVVVGGFDEKGPQIYVLDPVG 135
Query: 149 VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAK 208
ED +VA G G +A I+ E+ E++ ++ KL +R + RD + + + + +
Sbjct: 136 SLIEDKYVALGSGGPIALGIIEKEYREDIDVDEAEKLAVSAIREAIERDAVSGDGVDVLR 195
Query: 209 ITEEGTTISQ 218
ITEEG ++ +
Sbjct: 196 ITEEGYSLRE 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,045,271
Number of Sequences: 539616
Number of extensions: 3891015
Number of successful extensions: 8845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 8447
Number of HSP's gapped (non-prelim): 340
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)