Query 026175
Match_columns 242
No_of_seqs 118 out of 1107
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 6.7E-49 1.4E-53 334.8 21.4 217 7-226 4-226 (227)
2 COG0638 PRE1 20S proteasome, a 100.0 3E-48 6.5E-53 332.2 21.3 217 9-226 8-229 (236)
3 cd03760 proteasome_beta_type_4 100.0 3.6E-47 7.9E-52 317.6 25.7 194 26-219 1-197 (197)
4 PRK03996 proteasome subunit al 100.0 8.3E-48 1.8E-52 330.8 20.8 217 8-227 14-237 (241)
5 TIGR03633 arc_protsome_A prote 100.0 3.1E-47 6.8E-52 323.9 22.7 214 5-221 4-224 (224)
6 PTZ00246 proteasome subunit al 100.0 2.1E-47 4.6E-52 330.5 21.0 223 5-228 6-240 (253)
7 KOG0176 20S proteasome, regula 100.0 8.1E-48 1.7E-52 309.5 16.3 218 5-225 9-237 (241)
8 cd03759 proteasome_beta_type_3 100.0 6.9E-46 1.5E-50 309.4 25.2 189 26-217 2-192 (195)
9 cd03751 proteasome_alpha_type_ 100.0 2.1E-46 4.5E-51 316.3 20.9 203 5-209 5-212 (212)
10 cd03761 proteasome_beta_type_5 100.0 1.5E-45 3.3E-50 305.7 25.5 187 28-217 1-187 (188)
11 cd03757 proteasome_beta_type_1 100.0 1.8E-45 4E-50 310.6 25.3 194 21-217 1-205 (212)
12 PTZ00488 Proteasome subunit be 100.0 1.2E-45 2.6E-50 317.9 24.0 203 23-228 35-237 (247)
13 cd03758 proteasome_beta_type_2 100.0 3.7E-45 8E-50 304.6 25.5 188 28-217 2-191 (193)
14 TIGR03634 arc_protsome_B prote 100.0 4.9E-45 1.1E-49 301.6 25.0 185 27-214 1-185 (185)
15 cd03752 proteasome_alpha_type_ 100.0 1.7E-45 3.6E-50 311.1 21.6 202 7-209 6-213 (213)
16 cd03764 proteasome_beta_archea 100.0 1.4E-44 2.9E-49 299.8 25.6 187 28-217 1-187 (188)
17 cd03755 proteasome_alpha_type_ 100.0 2.2E-45 4.9E-50 309.0 21.2 198 7-209 4-207 (207)
18 cd03756 proteasome_alpha_arche 100.0 3.3E-45 7.2E-50 308.8 21.5 200 8-210 6-210 (211)
19 cd03749 proteasome_alpha_type_ 100.0 3.8E-45 8.2E-50 308.5 21.7 200 7-210 4-211 (211)
20 TIGR03690 20S_bact_beta protea 100.0 1.1E-44 2.4E-49 307.3 23.3 201 26-227 1-212 (219)
21 cd03763 proteasome_beta_type_7 100.0 6.2E-44 1.3E-48 296.2 25.6 189 28-220 1-189 (189)
22 cd01911 proteasome_alpha prote 100.0 2E-44 4.3E-49 303.6 21.1 199 8-209 5-209 (209)
23 cd03754 proteasome_alpha_type_ 100.0 1.9E-44 4.2E-49 305.0 20.9 200 7-209 5-215 (215)
24 cd03762 proteasome_beta_type_6 100.0 2.5E-43 5.5E-48 292.2 25.4 185 28-216 1-186 (188)
25 cd03753 proteasome_alpha_type_ 100.0 5.9E-44 1.3E-48 301.6 21.4 200 7-209 4-213 (213)
26 TIGR03691 20S_bact_alpha prote 100.0 1.7E-43 3.6E-48 301.2 19.6 207 10-225 6-227 (228)
27 cd01912 proteasome_beta protea 100.0 2.3E-42 5E-47 286.3 25.6 187 28-217 1-188 (189)
28 KOG0181 20S proteasome, regula 100.0 1.7E-44 3.7E-49 289.6 12.1 215 10-227 12-231 (233)
29 cd03765 proteasome_beta_bacter 100.0 2.7E-42 5.9E-47 294.5 24.8 193 28-223 1-211 (236)
30 PF00227 Proteasome: Proteasom 100.0 5.9E-41 1.3E-45 277.5 24.2 185 24-209 1-190 (190)
31 KOG0185 20S proteasome, regula 100.0 1.9E-41 4.1E-46 279.0 17.9 223 15-237 29-255 (256)
32 KOG0178 20S proteasome, regula 100.0 1.1E-41 2.3E-46 276.6 14.9 221 5-227 6-238 (249)
33 cd01906 proteasome_protease_Hs 100.0 4E-40 8.7E-45 270.7 23.9 181 28-209 1-182 (182)
34 KOG0183 20S proteasome, regula 100.0 6.1E-40 1.3E-44 266.9 13.0 208 15-227 18-231 (249)
35 KOG0184 20S proteasome, regula 100.0 1.6E-39 3.4E-44 265.7 14.7 211 10-222 14-231 (254)
36 KOG0179 20S proteasome, regula 100.0 4.6E-38 1E-42 255.1 20.6 202 12-216 13-227 (235)
37 KOG0175 20S proteasome, regula 100.0 1.8E-38 3.9E-43 264.4 16.2 209 24-235 68-277 (285)
38 KOG0177 20S proteasome, regula 100.0 5.6E-38 1.2E-42 251.1 18.1 191 27-219 1-193 (200)
39 KOG0182 20S proteasome, regula 100.0 1.8E-36 4E-41 246.2 17.1 216 9-227 14-240 (246)
40 KOG0863 20S proteasome, regula 100.0 1.1E-36 2.3E-41 250.4 15.1 213 10-226 12-233 (264)
41 KOG0173 20S proteasome, regula 100.0 1.2E-35 2.5E-40 247.1 18.1 199 22-224 32-230 (271)
42 KOG0174 20S proteasome, regula 100.0 1.4E-34 3E-39 232.4 18.0 202 23-228 15-219 (224)
43 KOG0180 20S proteasome, regula 100.0 1.1E-33 2.5E-38 223.3 18.5 187 26-215 7-195 (204)
44 PRK05456 ATP-dependent proteas 100.0 3.2E-32 7E-37 222.1 20.6 167 27-208 1-171 (172)
45 cd01913 protease_HslV Protease 100.0 4.5E-31 9.7E-36 214.2 20.3 165 28-208 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.7E-30 3.7E-35 210.8 20.0 165 28-208 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 9.6E-29 2.1E-33 197.2 21.4 162 28-191 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.6 1.7E-14 3.8E-19 113.6 12.8 170 25-210 2-176 (178)
49 COG3484 Predicted proteasome-t 99.3 2.7E-11 5.9E-16 99.0 12.4 184 27-216 1-205 (255)
50 PF09894 DUF2121: Uncharacteri 97.2 0.058 1.2E-06 44.5 17.0 153 27-212 1-180 (194)
51 COG4079 Uncharacterized protei 95.7 1.1 2.4E-05 38.4 15.6 152 27-212 1-181 (293)
52 KOG3361 Iron binding protein i 87.8 0.88 1.9E-05 35.4 4.0 45 140-185 70-114 (157)
53 PRK09732 hypothetical protein; 47.8 54 0.0012 25.6 5.3 36 175-214 5-40 (134)
54 PF08269 Cache_2: Cache domain 45.5 53 0.0011 23.3 4.7 41 175-220 33-73 (95)
55 PF07499 RuvA_C: RuvA, C-termi 44.1 17 0.00036 22.8 1.6 32 157-188 12-44 (47)
56 COG3193 GlcG Uncharacterized p 42.8 72 0.0016 25.2 5.3 36 174-213 5-40 (141)
57 PF03928 DUF336: Domain of unk 41.9 44 0.00095 25.6 4.0 35 176-214 2-36 (132)
58 cd06404 PB1_aPKC PB1 domain is 36.2 46 0.001 23.8 3.0 45 174-224 17-63 (83)
59 cd04513 Glycosylasparaginase G 28.9 2.2E+02 0.0049 24.9 6.7 57 155-214 187-247 (263)
60 PF01592 NifU_N: NifU-like N t 25.1 2.2E+02 0.0048 21.5 5.4 53 142-194 42-95 (126)
61 PF01458 UPF0051: Uncharacteri 25.1 2.2E+02 0.0047 23.9 5.9 48 138-190 182-229 (229)
62 PF10632 He_PIG_assoc: He_PIG 24.0 70 0.0015 18.1 1.7 20 130-149 7-26 (29)
63 cd04702 ASRGL1_like ASRGL1_lik 23.9 2.8E+02 0.0061 24.3 6.3 55 154-214 178-236 (261)
64 cd04512 Ntn_Asparaginase_2_lik 23.8 3E+02 0.0064 23.9 6.4 55 154-214 175-233 (248)
65 PRK14065 exodeoxyribonuclease 23.0 2E+02 0.0043 20.7 4.3 32 163-194 32-63 (86)
66 TIGR02261 benz_CoA_red_D benzo 22.8 1.5E+02 0.0032 25.9 4.5 48 131-185 104-154 (262)
67 COG0822 IscU NifU homolog invo 22.5 2.4E+02 0.0052 22.4 5.3 48 143-191 48-95 (150)
68 COG4245 TerY Uncharacterized p 21.2 1.7E+02 0.0036 24.5 4.1 39 181-219 22-61 (207)
69 PRK02487 hypothetical protein; 21.1 2.5E+02 0.0054 22.4 5.2 35 174-213 20-54 (163)
70 PF14804 Jag_N: Jag N-terminus 21.0 1.2E+02 0.0025 19.6 2.6 30 176-212 4-33 (52)
71 PRK11325 scaffold protein; Pro 20.1 2.6E+02 0.0057 21.3 5.0 50 143-192 46-95 (127)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-49 Score=334.83 Aligned_cols=217 Identities=21% Similarity=0.289 Sum_probs=203.0
Q ss_pred ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
....|.|+ -++||+.+|+++|+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|++|+++|+.+|++.+.
T Consensus 4 ~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 82 (227)
T cd03750 4 SLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLV 82 (227)
T ss_pred CCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHH
Confidence 34568888 4689999999999999999999999999999988 7888888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG 161 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g 161 (242)
+.+|. .++.|++++|++++++.+++.|++.+ |++++++|||+|++||+|+|+.+|+||++||+|++.+++++|+|+|
T Consensus 83 ~~~r~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g 161 (227)
T cd03750 83 KKARK-IAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKN 161 (227)
T ss_pred HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCC
Confidence 99998 47889999999999999999999988 7778889999999999999988999999999999999999999999
Q ss_pred hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCccccccc
Q 026175 162 NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTFW 226 (242)
Q Consensus 162 ~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~ 226 (242)
+.+++++||++|+++||++||++++++||+.+.+|+ +++++++|.+|+++ |++.++++||+...
T Consensus 162 ~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 162 YSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999999999998876 58899999999995 79999999987643
No 2
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=332.19 Aligned_cols=217 Identities=26% Similarity=0.318 Sum_probs=201.3
Q ss_pred CCCCCC---CCCccCccccccC-ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175 9 GLVGPN---DPIQRTQLPYVTG-TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84 (242)
Q Consensus 9 ~~~~~~---~~~~~~~~a~~~g-~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 84 (242)
.+|.|+ .+++|+++++.++ +|+|||+++||||||+|+|.+.+.++..++++|||+|+|||+|++||+.+|++.+++
T Consensus 8 ~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~ 87 (236)
T COG0638 8 TIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVR 87 (236)
T ss_pred eeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHH
Confidence 345555 4778999999875 999999999999999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175 85 NLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL 164 (242)
Q Consensus 85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~ 164 (242)
++|. +++.|++.++++++++.+++++++++|..+..+|||+|++||+|+|+++|+||++||+|++.+++++|+|+|++.
T Consensus 88 ~~r~-~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~ 166 (236)
T COG0638 88 YARA-EAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQF 166 (236)
T ss_pred HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHH
Confidence 9996 589999999999999999999999997764326999999999999988899999999999999999999999999
Q ss_pred hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCccccccc
Q 026175 165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTFW 226 (242)
Q Consensus 165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~~ 226 (242)
++++||+.|+++|++|||++++++||+.+.+||..++++++|++|++ +|++.++++++...+
T Consensus 167 a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~ 229 (236)
T COG0638 167 AYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLL 229 (236)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999 789999999988644
No 3
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-47 Score=317.56 Aligned_cols=194 Identities=58% Similarity=1.017 Sum_probs=183.3
Q ss_pred cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK 105 (242)
Q Consensus 26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~ 105 (242)
.|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+++++|.+...+++++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 38999999999999999999998889999999999999999999999999999999999999852235777899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCC--CCCHHHH
Q 026175 106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDG 182 (242)
Q Consensus 106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~~s~eea 182 (242)
.+++++++.+|++|+++|||+|++|+||+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|++ +||+|||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 9999999999999988999999999999995 899999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCC
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQP 219 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~ 219 (242)
++++.+||+.+.+||..++++++|++|+++|++...|
T Consensus 161 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 197 (197)
T cd03760 161 RALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEGP 197 (197)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCCC
Confidence 9999999999999999999999999999999876543
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=8.3e-48 Score=330.81 Aligned_cols=217 Identities=21% Similarity=0.272 Sum_probs=202.1
Q ss_pred cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175 8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84 (242)
Q Consensus 8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 84 (242)
.++|.|+ .++||+.+|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++++++|..+|++.+++
T Consensus 14 ~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~ 92 (241)
T PRK03996 14 ITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLID 92 (241)
T ss_pred CceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHH
Confidence 5677787 5689999999999999999999999999999998 77878889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccch
Q 026175 85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGN 162 (242)
Q Consensus 85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~ 162 (242)
+++. .++.|+++++++++++.+++++++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+
T Consensus 93 ~~~~-~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~ 171 (241)
T PRK03996 93 RARV-EAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGR 171 (241)
T ss_pred HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCc
Confidence 9998 47888899999999999999999987 67777899999999999999888999999999999999999999999
Q ss_pred HhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175 163 HLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG 227 (242)
Q Consensus 163 ~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~ 227 (242)
..++++|++.|+++|+++||++++++||+.+.++ ..++++++|++|+++| ++.++++||+..++
T Consensus 172 ~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~ 237 (241)
T PRK03996 172 DTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLE 237 (241)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999865 6788999999999987 88999999987664
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.1e-47 Score=323.89 Aligned_cols=214 Identities=21% Similarity=0.282 Sum_probs=199.2
Q ss_pred hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|--.++|.|+ .++||+++|+++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|++.
T Consensus 4 ~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 82 (224)
T TIGR03633 4 DRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARV 82 (224)
T ss_pred CCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHH
Confidence 3345778888 5689999999999999999999999999999998 77877889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
+.+.++.. ++.|+++++++++++.++++|++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus 83 l~~~~~~~-~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G 161 (224)
T TIGR03633 83 LIDRARIE-AQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIG 161 (224)
T ss_pred HHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEEC
Confidence 99999984 7888899999999999999999987 66777789999999999999889999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcc
Q 026175 160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYA 221 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~e 221 (242)
+|+.+++++|+++|+++|+.+||++++++||+.+.+ |..++++++|++|+++| ++.++++|
T Consensus 162 ~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 162 AGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999999999999999999999987 88999999999999988 78888775
No 6
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-47 Score=330.52 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=204.1
Q ss_pred hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+ -++||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|+++++++++|+.+|++.
T Consensus 6 d~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 85 (253)
T PTZ00246 6 DSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANI 85 (253)
T ss_pred CCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHH
Confidence 3445678888 4789999999999999999999999999999998766665567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT 158 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai 158 (242)
+.+.+|.. ++.|++.++++++++.+++.++..+ |++++++|||+|++||+||| +++|+||++||+|++.+++++|+
T Consensus 86 l~~~~r~~-~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~ 164 (253)
T PTZ00246 86 LINQCRLY-AQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAI 164 (253)
T ss_pred HHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEE
Confidence 99999974 7778889999999999999999765 77777899999999999999 58899999999999999999999
Q ss_pred ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC------eEEeCCccccccccc
Q 026175 159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG------TTISQPYALKTFWGF 228 (242)
Q Consensus 159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g------~~~~~~~ei~~~~~~ 228 (242)
|+|+.+++++|+++|+++|+++||++++++||+.+..+|..++++++|++|+++| ++.++++||++...-
T Consensus 165 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 165 GQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred CCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875 789999999986643
No 7
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-48 Score=309.47 Aligned_cols=218 Identities=18% Similarity=0.279 Sum_probs=202.5
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|.--|+|.|++ +|||+.+|++.|+|.|||+.++|||||++||++ ++|+.++++.||++|++||+|++||+.+|++.
T Consensus 9 drgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarT 87 (241)
T KOG0176|consen 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADART 87 (241)
T ss_pred cccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHH
Confidence 34458999996 689999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--Hhh-----cCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNR-----RNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS 154 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~-----r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~ 154 (242)
++++.|. +++.|++.|+++++++.+.+.+|++. |.. +..-|||||++|+||+|+.+|+||+.||+|++..++
T Consensus 88 lve~arv-~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~ 166 (241)
T KOG0176|consen 88 LVERARV-ETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYK 166 (241)
T ss_pred HHHHHHH-HhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEec
Confidence 9999998 58999999999999999999999875 432 334599999999999999999999999999999999
Q ss_pred eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc
Q 026175 155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF 225 (242)
Q Consensus 155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~ 225 (242)
+-|+|+|+.-+.+.|++.|+++|+++||+.+++..|+.+++ +.++.+|++|.+|+++ ++++++++|++..
T Consensus 167 AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMe-eKl~~~Nvev~~vt~e~~f~~~t~EE~~~~ 237 (241)
T KOG0176|consen 167 AKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVME-EKLNSNNVEVAVVTPEGEFHIYTPEEVEQV 237 (241)
T ss_pred ceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-HhcCccceEEEEEcccCceEecCHHHHHHH
Confidence 99999999999999999999999999999999999999996 5678889999999998 5999999998754
No 8
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.9e-46 Score=309.41 Aligned_cols=189 Identities=20% Similarity=0.324 Sum_probs=177.8
Q ss_pred cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK 105 (242)
Q Consensus 26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~ 105 (242)
+|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.+++|.+ ++.|+++++.+++++
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~-~~~~~~~~~~~~~~~ 80 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFR-VNLYRLREEREIKPK 80 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHH-HHHHHHHhCCCCCHH
Confidence 6999999999999999999999866655577899999999999999999999999999999984 788999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175 106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGV 183 (242)
Q Consensus 106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai 183 (242)
.+|++|++.+|++| ++||+|++||+|+| +++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||.+||+
T Consensus 81 ~la~~l~~~ly~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 158 (195)
T cd03759 81 TFSSLISSLLYEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELF 158 (195)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999987 58999999999999 5679999999999998877 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
+++++||+.+.+||..++++++|++|+++|++..
T Consensus 159 ~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 192 (195)
T cd03759 159 ETISQALLSAVDRDALSGWGAVVYIITKDKVTTR 192 (195)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEE
Confidence 9999999999999999999999999999997643
No 9
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-46 Score=316.32 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=188.1
Q ss_pred hhccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-....|.|+ .++||+.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|++|++++++|+.+|++.
T Consensus 5 d~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 83 (212)
T cd03751 5 DLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVT-SKLYEPGSNKRIFNVDRHIGIAVAGLLADGRH 83 (212)
T ss_pred cCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEcccc-ccccCcchhcceeEecCcEEEEEEEChHhHHH
Confidence 4455678888 5789999999999999999999999999999987 57777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
+++++|. .++.|+++++++++++.+++.|++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus 84 l~~~~r~-~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G 162 (212)
T cd03751 84 LVSRARE-EAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIG 162 (212)
T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEEC
Confidence 9999998 48889999999999999999999876 67777799999999999999889999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
+|+.+++++||++|+++||++||+++++++|+.+.+.+.....+|||.++
T Consensus 163 ~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 163 KGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999999999999999999999999766677889998874
No 10
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-45 Score=305.72 Aligned_cols=187 Identities=19% Similarity=0.214 Sum_probs=179.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+++++|. +++.|+++++++++++.+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~-~~~~y~~~~~~~i~~~~l 79 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGR-ECRLYELRNKERISVAAA 79 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence 6899999999999999999998888888999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
|+++++.+|..| ..||+|++||+|+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||++++.
T Consensus 80 a~~ls~~l~~~~--~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~ 157 (188)
T cd03761 80 SKLLSNMLYQYK--GMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLAR 157 (188)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999998887 469999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
+||+.+.+||..++++++|++|+++|++.+
T Consensus 158 ~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 158 RAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 999999999999999999999999998764
No 11
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-45 Score=310.64 Aligned_cols=194 Identities=24% Similarity=0.360 Sum_probs=182.5
Q ss_pred ccccc-cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 21 QLPYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 21 ~~a~~-~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
|+|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|.+ ++.|++++|
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~-~~~~~~~~g 79 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKAR-IKMYKYSHN 79 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHH-HHHHhHHhC
Confidence 45654 8999999999999999999999988778789999999999999999999999999999999984 889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcC----
Q 026175 100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWH---- 174 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~---- 174 (242)
++++++.+++++++.+|++| ++||+|++||||+| +++|+||++||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 80 ~~i~~~~la~~ls~~ly~~R--~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 157 (212)
T cd03757 80 KEMSTEAIAQLLSTILYSRR--FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQ 157 (212)
T ss_pred CCCCHHHHHHHHHHHHHhhc--CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhcc
Confidence 99999999999999999987 58999999999999 567999999999999999999999999999999999985
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 175 -----ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 175 -----~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
++||++||++++.+||+.+.+||+.++++++|++|+++|++..
T Consensus 158 ~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~ 205 (212)
T cd03757 158 NNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE 205 (212)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence 8999999999999999999999999999999999999997643
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.2e-45 Score=317.89 Aligned_cols=203 Identities=18% Similarity=0.210 Sum_probs=191.5
Q ss_pred ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
++.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. .++.|++++|+++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~-~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAM-QCRLYELRNGELI 113 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence 678999999999999999999999998899999999999999999999999999999999999998 4788999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHH
Q 026175 103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDG 182 (242)
Q Consensus 103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea 182 (242)
+++.+|++|++.+|..|. .|+.+++|+||+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||
T Consensus 114 sv~~la~~ls~~l~~~R~--~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa 191 (247)
T PTZ00488 114 SVAAASKILANIVWNYKG--MGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA 191 (247)
T ss_pred CHHHHHHHHHHHHHhcCC--CCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence 999999999999988752 255556899999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccccc
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF 228 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~ 228 (242)
++++++||+.+.+||..++++++|++|+++|++.++++||+.+.+-
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~ 237 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQK 237 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653
No 13
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-45 Score=304.60 Aligned_cols=188 Identities=20% Similarity=0.344 Sum_probs=178.0
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++++|||+|+++++++++|..+|++.+.+++|. +++.|++.++++++++.+
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~-~~~~~~~~~~~~i~~~~l 80 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQK-NIQLYKMRNGYELSPKAA 80 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence 7999999999999999999988898999999999999999999999999999999999998 488899999999999999
Q ss_pred HHHHHHHHHhh-cCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175 108 HSYLTRVMYNR-RNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL 185 (242)
Q Consensus 108 a~~l~~~~~~~-r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l 185 (242)
++++++.+|.+ |.. |||+|++|++|+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus 81 a~~l~~~~~~~~~~~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 81 ANFTRRELAESLRSR-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999988543 333 79999999999994 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 186 LEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 186 ~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
+.+||+.+.+||+.++++++|++|+++|++.+
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~ 191 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDL 191 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence 99999999999999999999999999998754
No 14
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.9e-45 Score=301.65 Aligned_cols=185 Identities=30% Similarity=0.439 Sum_probs=178.2
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.+++|.+ ++.|+++++++++++.
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 79 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAE-AKLYELRRGRPMSVKA 79 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHH
Confidence 789999999999999999999989999999999999999999999999999999999999984 7888889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++|++.+|..+ +|||+|++|++|+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||++++
T Consensus 80 ~a~~l~~~~~~~~--~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 157 (185)
T TIGR03634 80 LATLLSNILNSNR--FFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLA 157 (185)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999998774 79999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
.+||+.+.+||..++++++|++|+++|+
T Consensus 158 ~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 158 VRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999999984
No 15
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-45 Score=311.05 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=187.5
Q ss_pred ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
-..+|.|+ .++||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|+++++||..+|++.+.
T Consensus 6 ~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 85 (213)
T cd03752 6 RTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILI 85 (213)
T ss_pred CCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHH
Confidence 34678888 467999999999999999999999999999999866555556999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEcc
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGF 160 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~ 160 (242)
+++|.. ++.|+++++++++++.+++.|+..+ |++.+++|||+|++|++|+| +.+|+||.+||+|++.+++++|+|+
T Consensus 86 ~~~r~~-~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~ 164 (213)
T cd03752 86 NYARLI-AQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGN 164 (213)
T ss_pred HHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECC
Confidence 999984 8899999999999999999999865 77777789999999999999 5789999999999999999999999
Q ss_pred chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
++.+++++||+.|+++||++||++++++||+.+.+||..++.+++|.++
T Consensus 165 gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 165 NNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred CcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999875
No 16
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-44 Score=299.80 Aligned_cols=187 Identities=27% Similarity=0.406 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~l 79 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKA-EARLYELRRGRPMSIKAL 79 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence 6899999999999999999998899999999999999999999999999999999999998 588899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
++++++.+|.++ +|||+|++|+||+|+++|+||++||+|++.+++++|+|+|+++++++|++.|+++|+++||+++++
T Consensus 80 ~~~i~~~~~~~~--~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~ 157 (188)
T cd03764 80 ATLLSNILNSSK--YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI 157 (188)
T ss_pred HHHHHHHHHhcC--CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 999999998875 799999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
+||+.+.+||+.++++++|++|+++|++.+
T Consensus 158 ~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~ 187 (188)
T cd03764 158 RAIKSAIERDSASGDGIDVVVITKDGYKEL 187 (188)
T ss_pred HHHHHHHhhcCCCCCcEEEEEECCCCeEeC
Confidence 999999999999999999999999998765
No 17
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-45 Score=309.01 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=184.6
Q ss_pred ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
..++|.|+ .++||+.+|+++|+|+|||+++||||||+|++.+ +.++.++..+||++|++|++++++|+.+|++.+.
T Consensus 4 ~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 82 (207)
T cd03755 4 AITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLI 82 (207)
T ss_pred CCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHH
Confidence 34678888 5789999999999999999999999999999976 5677777899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEcc
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGF 160 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~ 160 (242)
+.+|. .++.|+++++++++++.+++.|++.+ |++++++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+
T Consensus 83 ~~~r~-~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~ 161 (207)
T cd03755 83 NRARL-ECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGR 161 (207)
T ss_pred HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECC
Confidence 99998 48889999999999999999999988 888888999999999999994 699999999999999999999999
Q ss_pred chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
|+.+++++||++|+++|+.+||++++++||+.+.+ .++.++||+++
T Consensus 162 gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 162 NSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 99999999999999999999999999999999985 67889999875
No 18
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-45 Score=308.80 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=187.4
Q ss_pred cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175 8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84 (242)
Q Consensus 8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 84 (242)
.++|.|+ .++||+.+|+++|+|+|||+++||||||+|++.+ +.++..++.+||++|++++++++||+.+|++.+.+
T Consensus 6 ~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~ 84 (211)
T cd03756 6 ITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLID 84 (211)
T ss_pred CceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHH
Confidence 3568888 5789999999999999999999999999999987 67777889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccch
Q 026175 85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGN 162 (242)
Q Consensus 85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~ 162 (242)
+++. .++.|+++++++++++.++++|++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+
T Consensus 85 ~l~~-~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~ 163 (211)
T cd03756 85 RARV-EAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGR 163 (211)
T ss_pred HHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCC
Confidence 9998 48889999999999999999999976 66777789999999999999889999999999999999999999999
Q ss_pred HhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175 163 HLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT 210 (242)
Q Consensus 163 ~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~ 210 (242)
.+++++||+.|+++|+++||++++++||..+.+++. ++++++|++|+
T Consensus 164 ~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 164 QAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 999999999999999999999999999999987664 89999999986
No 19
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-45 Score=308.51 Aligned_cols=200 Identities=18% Similarity=0.170 Sum_probs=184.2
Q ss_pred ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
....|.|+ -++||+++|+++|+|+|||+++||||||+|+|.+. .+ .++.+|||+|++++++++||+.+|++.+.
T Consensus 4 ~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 80 (211)
T cd03749 4 DVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATS-EL--SSYQKKIFKVDDHIGIAIAGLTADARVLS 80 (211)
T ss_pred CCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcc-cc--CCccccEEEeCCCEEEEEEeChHhHHHHH
Confidence 34567787 57899999999999999999999999999999763 43 35679999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccc
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFG 161 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g 161 (242)
+++|. .++.|+++++++++++.+++.+++.+ |+++.+.|||+|++||+|+|+.+|+||++||+|++.+++++|+|+|
T Consensus 81 ~~~r~-~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g 159 (211)
T cd03749 81 RYMRQ-ECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGAR 159 (211)
T ss_pred HHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCC
Confidence 99998 48899999999999999999999876 5577778999999999999988899999999999999999999999
Q ss_pred hHhhHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEc
Q 026175 162 NHLARPILRDEWH--ENLSYEDGVKLLEKCMRVLLYRDR-SAVNKLQIAKIT 210 (242)
Q Consensus 162 ~~~a~~~Le~~~~--~~~s~eeai~l~~~~l~~~~~~d~-~s~~~i~v~ii~ 210 (242)
+++++++||++|+ ++|+.+||+++++++|+.+..+|. .++++|||++|+
T Consensus 160 ~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 160 SQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred cHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999998 599999999999999999998887 899999999984
No 20
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.1e-44 Score=307.32 Aligned_cols=201 Identities=22% Similarity=0.250 Sum_probs=185.9
Q ss_pred cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK 105 (242)
Q Consensus 26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~ 105 (242)
+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. +++.|+++++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~-~~~~~~~~~~~~i~~~ 79 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQV-ELEHYEKIEGVPLTLD 79 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHH
Confidence 489999999999999999999998899999999999999999999999999999999999997 4888999999999999
Q ss_pred HHHHHHHHHHHhh-cCCCCCcceEEEEEEEEC--CcEEEEEECCCCc-eeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175 106 ELHSYLTRVMYNR-RNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGV-NFEDSHVATGFGNHLARPILRDEWHENLSYED 181 (242)
Q Consensus 106 ~la~~l~~~~~~~-r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 181 (242)
.++++|++.++.. ...+|||+|++||+|+|+ ++|+||++||+|+ +..++++|+|+|+++++++||++|+++||.+|
T Consensus 80 ~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 80 GKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999988654 234899999999999994 6899999999995 77789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCeEEeCCcccccccc
Q 026175 182 GVKLLEKCMRVLLYRDRSAVNK-------LQIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 182 ai~l~~~~l~~~~~~d~~s~~~-------i~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
|++++++||+.+.+||..+++. ++|++|+++|++.++++||+....
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~ 212 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELAR 212 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHH
Confidence 9999999999999999876664 399999999999999999988653
No 21
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-44 Score=296.23 Aligned_cols=189 Identities=21% Similarity=0.316 Sum_probs=180.0
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+++++++++|..+|++.+.+.+|.+ ++.|+++++++++++.+
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSN-LELHRLNTGRKPRVVTA 79 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHH
Confidence 68999999999999999999988888889999999999999999999999999999999984 88999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
+++|++.+|..+ .||+|++|+||+|+++|+||++||+|++.+++++|+|+++.+++++|+++|+++||++||+++++
T Consensus 80 a~~l~~~l~~~~---~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~ 156 (189)
T cd03763 80 LTMLKQHLFRYQ---GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVC 156 (189)
T ss_pred HHHHHHHHHHcC---CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 999999988654 49999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCc
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPY 220 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ 220 (242)
+||+.+.+||+.++++++|++|+++|++...|+
T Consensus 157 ~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 157 EAIEAGIFNDLGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHHHHHhcCcCCCceEEEEEcCCcEEEecCC
Confidence 999999999999999999999999999887664
No 22
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2e-44 Score=303.60 Aligned_cols=199 Identities=21% Similarity=0.303 Sum_probs=186.5
Q ss_pred cCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175 8 QGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84 (242)
Q Consensus 8 ~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 84 (242)
.+.|.|+ .++||+++|+.+|+|+|||+++||||||+|++.+. .++..++.+|||+|+++++++++|..+|++.+.+
T Consensus 5 ~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~ 83 (209)
T cd01911 5 ITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVN 83 (209)
T ss_pred CccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHH
Confidence 4778888 46899999999999999999999999999999984 5666789999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccc
Q 026175 85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFG 161 (242)
Q Consensus 85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g 161 (242)
.++. .++.|++++|++++++.+|+++++.+ |++++++||++|++||+|+|+ ++|+||.+||.|++.+++++++|+|
T Consensus 84 ~l~~-~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g 162 (209)
T cd01911 84 RARV-EAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKG 162 (209)
T ss_pred HHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCC
Confidence 9998 47888899999999999999999987 777778899999999999995 5999999999999999999999999
Q ss_pred hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 162 NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 162 ~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
+.+++++|++.|+++|+.+||++++.+||+.+.+||. ++++++|+++
T Consensus 163 ~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 163 SQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred cHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999999999999998 9999999875
No 23
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-44 Score=304.98 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=184.1
Q ss_pred ccCCCCCC---CCCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 82 (242)
-.++|.|+ -++||+++|+++ |+|+|||+++||||||+|+|.+ ..++.++..+|||+|++++++++||+.+|++.+
T Consensus 5 ~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~-~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l 83 (215)
T cd03754 5 HITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVP-DKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQ 83 (215)
T ss_pred CCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEecccc-ccccCCcccCceEEEcCCEEEEEEechhhHHHH
Confidence 35678888 468999999985 8899999999999999999988 466666789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH--HHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEc
Q 026175 83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRV--MYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~--~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
.+++|. .++.|+++++++++++.+|+++++. +|+++++.|||+|++|++|+| +++|+||++||+|++.+++++|+|
T Consensus 84 ~~~~r~-~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G 162 (215)
T cd03754 84 VQRARY-EAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAG 162 (215)
T ss_pred HHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEEC
Confidence 999998 4889999999999999999999986 588888889999999999999 479999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCC--C--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 160 FGNHLARPILRDEWHEN--L--SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~--~--s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
+|+..++++||++|+++ | +.+||++++++||..+.+|| .++++++|.+|
T Consensus 163 ~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 163 VKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred CCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999985 7 99999999999999999988 45889999875
No 24
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-43 Score=292.17 Aligned_cols=185 Identities=17% Similarity=0.296 Sum_probs=177.1
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~-~~~~~~~~~~~~~~~~~~ 79 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRY-YLDMHSIELGEPPLVKTA 79 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHH-HHHHhHHhhCCCCCHHHH
Confidence 6899999999999999999998888888999999999999999999999999999999998 488899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|.+| |||+|++||||+|+ ++|+||++||+|++.+++++++|+|+.+++++|++.|+++||++||++++
T Consensus 80 a~~l~~~~~~~~---~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 156 (188)
T cd03762 80 ASLFKNLCYNYK---EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV 156 (188)
T ss_pred HHHHHHHHHhcc---ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999998775 79999999999994 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTI 216 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~ 216 (242)
++||+.+.+||+.++++++|++|+++|++.
T Consensus 157 ~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 157 KNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 999999999999999999999999999764
No 25
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-44 Score=301.59 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=183.6
Q ss_pred ccCCCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
..++|.|+ .++||+++|+++|+|+|||+++||||||+|+|.+ +.+...++.+||++|+++++++++|+.+|++.+.
T Consensus 4 ~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 82 (213)
T cd03753 4 GVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRIT-SPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLI 82 (213)
T ss_pred CCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccC-CcCcCCCccceEEEEcCCEEEEEecCHHHHHHHH
Confidence 34778888 5689999999999999999999999999999998 4667778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhc-----CCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeE
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRR-----NKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHV 156 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r-----~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~ 156 (242)
+.+|. +++.|+++++++++++.+++.|++.++ +++ ..+|||+|++||+|+|+++|+||++||+|++.+++++
T Consensus 83 ~~~r~-~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~ 161 (213)
T cd03753 83 DHARV-EAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAK 161 (213)
T ss_pred HHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEE
Confidence 99998 588899999999999999999999884 343 2369999999999999889999999999999999999
Q ss_pred EEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 157 ATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 157 aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
|+|+++++++++|+++|+++||++||++++++||+.+.+++ +++++++|+++
T Consensus 162 a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 162 AIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred EECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999999999999987654 88899999975
No 26
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.7e-43 Score=301.24 Aligned_cols=207 Identities=19% Similarity=0.231 Sum_probs=183.3
Q ss_pred CCCCC----CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHH
Q 026175 10 LVGPN----DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRN 85 (242)
Q Consensus 10 ~~~~~----~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~ 85 (242)
|+.|| .+-||+++|+++|+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.+++.
T Consensus 6 ~~~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~ 77 (228)
T TIGR03691 6 YVSPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRA 77 (228)
T ss_pred ccCHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHH
Confidence 44555 567999999999999999999999999999972 368999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC-CCCCHHHHHHHHHHHHHhh-cCCCCCcceEEEEEEEE--CCcEEEEEECCCCceeeeC-eEEEcc
Q 026175 86 LDELILYDNMWDDG-NSLGPKELHSYLTRVMYNR-RNKFDPLWNSLVLGGVK--NGQKYLGMVSMIGVNFEDS-HVATGF 160 (242)
Q Consensus 86 lr~~~~~~~~~~~g-~~i~~~~la~~l~~~~~~~-r~~~rP~~vs~lvaG~D--~~~p~Ly~idp~G~~~~~~-~~aiG~ 160 (242)
++.. ++.|++.++ .+++++.+|+.+++.++.. ++++|||+|++|++|+| +.+|+||++||+|++.+++ ++|+|+
T Consensus 78 ~r~~-a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~ 156 (228)
T TIGR03691 78 GIRY-ADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGG 156 (228)
T ss_pred HHHH-HHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECC
Confidence 9984 788888887 6899999998777665321 34579999999999998 4789999999999999976 899999
Q ss_pred chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH--hcccCCCCcEEEEEEcCCC----eEEeCCcccccc
Q 026175 161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLL--YRDRSAVNKLQIAKITEEG----TTISQPYALKTF 225 (242)
Q Consensus 161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~--~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~ 225 (242)
|++.++++||++|+++||.+||++++++||+.+. +++.+++.+++|.+|++++ ++.++++||+.+
T Consensus 157 gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~ 227 (228)
T TIGR03691 157 TTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERL 227 (228)
T ss_pred ChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhh
Confidence 9999999999999999999999999999999995 4667889999999999754 899999998764
No 27
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-42 Score=286.28 Aligned_cols=187 Identities=32% Similarity=0.484 Sum_probs=178.0
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+..+.+++.+|||+|+++++++++|+.+|++.+.++++. .++.|++.++++++++.+
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~-~~~~~~~~~~~~~~~~~l 79 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKR-NLRLYELRNGRELSVKAA 79 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence 6899999999999999999998877778999999999999999999999999999999998 488899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|.++. |||++++||||+|+ ++|+||++||+|++.+++++|+|+++++++++|++.|+++||++||++++
T Consensus 80 ~~~l~~~~~~~~~--~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~ 157 (189)
T cd01912 80 ANLLSNILYSYRG--FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV 157 (189)
T ss_pred HHHHHHHHHhcCC--CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 9999999988763 89999999999996 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
.+||+.+.++|+.++++++|++|+++|++..
T Consensus 158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 9999999999999999999999999997653
No 28
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=289.63 Aligned_cols=215 Identities=19% Similarity=0.269 Sum_probs=202.3
Q ss_pred CCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175 10 LVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86 (242)
Q Consensus 10 ~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 86 (242)
+|.|+ .+++|+..|+.+|.+.|||+.+||||||++++.. +.|....+++|++.|.+||+|.+||..+|++.+++..
T Consensus 12 tFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~ 90 (233)
T KOG0181|consen 12 TFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKS 90 (233)
T ss_pred EEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhhHH
Confidence 45666 6899999999999999999999999999999877 7898899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175 87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL 164 (242)
Q Consensus 87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~ 164 (242)
|+. ++.|...|++++++..|...++..+ |||.++.|||||++||||+|+++|.||++||||++..|+++|+|.+...
T Consensus 91 rki-Ae~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~ 169 (233)
T KOG0181|consen 91 RKI-AEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVN 169 (233)
T ss_pred HHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcch
Confidence 984 7778888999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175 165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
++.+||++|+++|.+|+++..++..|+...+. ..+.++|||.++..++++++++.||+++++
T Consensus 170 aktFlEkR~~edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~~F~~lt~~eI~d~l~ 231 (233)
T KOG0181|consen 170 AKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGENGFRRLTPAEIEDYLA 231 (233)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCCceeecCHHHHHHHHh
Confidence 99999999999999999999999999999864 477899999999999999999999998764
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-42 Score=294.49 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=172.7
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEec----CceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCC-CC
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIG----KHSLLGASGEISDFQELLRNLDELILYDNMWDDGN-SL 102 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~-~i 102 (242)
|.+|||+++||||||+|+|.+ ..++..++.+|||+|+ +|++|+.||+.+|++.+++++|.+ ++.|++++|+ ++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~-~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~-~~~~~~~~g~~~~ 78 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTN-AGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRD-LEDPEETNLLNAP 78 (236)
T ss_pred CeEEEEEeCCeEEEEEccCcc-CCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHH-HHhhHHhhCCCCC
Confidence 468999999999999999987 4555556899999998 899999999999999999999984 8999999999 89
Q ss_pred CHHHHHHHHHHHH---HhhcCC-----CCCcceEEEEEEEE-CCcEEEEEECCCCceeee----CeEEEccchHhhHHHH
Q 026175 103 GPKELHSYLTRVM---YNRRNK-----FDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFED----SHVATGFGNHLARPIL 169 (242)
Q Consensus 103 ~~~~la~~l~~~~---~~~r~~-----~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~----~~~aiG~g~~~a~~~L 169 (242)
+++.+|+++++.+ +++.++ .|||+|++||+|+| +.||+||++||+|++.++ +++|+|. +.+++++|
T Consensus 79 ~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~L 157 (236)
T cd03765 79 TMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPIL 157 (236)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHH
Confidence 9999999999975 344443 48999999999999 678999999999999998 5689996 69999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccc
Q 026175 170 RDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALK 223 (242)
Q Consensus 170 e~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~ 223 (242)
|++|+++||++||++++++||+.+.+||..++++|+|++|+++|++....+.|+
T Consensus 158 ek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~ 211 (236)
T cd03765 158 DRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIE 211 (236)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEec
Confidence 999999999999999999999999999999999999999999998764444443
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.9e-41 Score=277.50 Aligned_cols=185 Identities=32% Similarity=0.475 Sum_probs=171.1
Q ss_pred cccCceEEEEEeCCEEEEEEcCCcccCceeeeCC-cCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKS-VERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
|++|+|+|||+++|||+||+|+|.+++..+..++ .+|||+|++|++++++|..+|++.+.++++. .++.|++.++.++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~-~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLRE-EAQEYRFSYGRPI 79 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHSSGT
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcc-cchhhhhccCccc
Confidence 4689999999999999999999999888875555 7999999999999999999999999999998 4888999999999
Q ss_pred CHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCC
Q 026175 103 GPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLS 178 (242)
Q Consensus 103 ~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s 178 (242)
+++.+++.+++.+ ++++.++||+++++|++|+|+ ++|+||.+||+|++.++ +++|+|+|+.+++++|++.|+++|+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence 9998888888765 445556899999999999995 56999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
++||++++++||+.+.++|..++++++|+||
T Consensus 160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 160 LEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999999999987
No 31
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=279.04 Aligned_cols=223 Identities=60% Similarity=0.995 Sum_probs=213.6
Q ss_pred CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN 94 (242)
Q Consensus 15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~ 94 (242)
.|++++..|+..||++||++++|||+||+|+..++|++....+++|||+++||+++|++|..+|++.+.+.|.+..++..
T Consensus 29 ~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn 108 (256)
T KOG0185|consen 29 YPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN 108 (256)
T ss_pred CCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998767777
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhc
Q 026175 95 MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW 173 (242)
Q Consensus 95 ~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~ 173 (242)
.+..|+.+.|+.+++.|.+++|.+|+.|.|+...++|+|+|+ +.|+|..+|-.|..++.+.+|+|.|++.+.++|++.|
T Consensus 109 ~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~ 188 (256)
T KOG0185|consen 109 RLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEW 188 (256)
T ss_pred ccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhh
Confidence 788889999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred C---CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCCccC
Q 026175 174 H---ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAG 237 (242)
Q Consensus 174 ~---~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~~~~ 237 (242)
+ ++++.+||..++.+||+...+||+.+.++++|++|+++|+++..|+.|..+|+|++..+...+
T Consensus 189 ~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~fa~~~~gy~~ 255 (256)
T KOG0185|consen 189 EKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWDFAETIKGYET 255 (256)
T ss_pred hccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecchhhhhcccccc
Confidence 7 589999999999999999999999999999999999999999999999999999999887654
No 32
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=276.57 Aligned_cols=221 Identities=15% Similarity=0.196 Sum_probs=202.7
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceee-eCCcCeEEEecCceEEEecCChhHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIR-YKSVERIKPIGKHSLLGASGEISDFQ 80 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~ 80 (242)
|.|++.|.|++ +|||+++++.+.+|+|||.++||||||++++.+ ++|+. ..+.+||++|+|+|+|+.+|+.+|+.
T Consensus 6 dsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t-~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAn 84 (249)
T KOG0178|consen 6 DSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVT-SKLLDTSIPMEKIYKLNDNIACAVAGLTSDAN 84 (249)
T ss_pred CCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccc-hhhhhccccHHHhhhcCCceEEEEecccccHH
Confidence 78999999996 689999999999999999999999999999988 56654 56889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175 81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA 157 (242)
Q Consensus 81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a 157 (242)
.|++.+|. .+|.|.+++|+++|++.|.+.+|... |||.++.||||||+|.+|||+ .|.+||+.||||++..|++.+
T Consensus 85 vL~n~aRi-~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~c 163 (249)
T KOG0178|consen 85 VLKNYARI-IAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATC 163 (249)
T ss_pred HHHHHHHH-HHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceee
Confidence 99999998 58999999999999999999999866 999999999999999999995 679999999999999999999
Q ss_pred EccchHhhHHHHhhhcCCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----eEEeCCcccccccc
Q 026175 158 TGFGNHLARPILRDEWHEN-LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----TTISQPYALKTFWG 227 (242)
Q Consensus 158 iG~g~~~a~~~Le~~~~~~-~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~ 227 (242)
+|..+..++++|+..|+++ ++++||+.++++.|....+.+.++.+.+||+.|+++. .+.+.++||....+
T Consensus 164 iG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~ 238 (249)
T KOG0178|consen 164 IGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLE 238 (249)
T ss_pred eccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHH
Confidence 9999999999999999876 4599999999999999999999999999999999975 45677778776444
No 33
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4e-40 Score=270.73 Aligned_cols=181 Identities=27% Similarity=0.351 Sum_probs=170.6
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+....+++.+|||+|+++++++++|..+|++.+.+.+++. ++.|+++++++++++.+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~-~~~~~~~~~~~~~~~~l 79 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKE-AQLYRLRYGEPIPVEAL 79 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHH
Confidence 68999999999999999999977776688999999999999999999999999999999984 78888899999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|..+..+|||++++|++|+|+ ++|+||.+||+|++.+++++|+|+|+.+++++|++.|+++||.+||++++
T Consensus 80 ~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 159 (182)
T cd01906 80 AKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELA 159 (182)
T ss_pred HHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999876533799999999999995 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEE
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
++||+.+.++|..++.+++|.+|
T Consensus 160 ~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 160 LKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999989999999875
No 34
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-40 Score=266.90 Aligned_cols=208 Identities=13% Similarity=0.198 Sum_probs=194.2
Q ss_pred CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN 94 (242)
Q Consensus 15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~ 94 (242)
-+|||+.+|+.+|+|+||++++|+|||..+++.. .+|...+...||..+++|+.++++|+.+|++.+++++|- +|+.|
T Consensus 18 ~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv-~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArv-ecqSh 95 (249)
T KOG0183|consen 18 FQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSV-PKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARV-ECQSH 95 (249)
T ss_pred EeeHhHHHHHhcCceEEEeccCceEEEEEeecch-hhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhH-hhhhh
Confidence 4799999999999999999999999999999976 899999999999999999999999999999999999997 69999
Q ss_pred hhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhh
Q 026175 95 MWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD 171 (242)
Q Consensus 95 ~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~ 171 (242)
++..+.+++++.+.++|+.+. |||.++.||||+|+||+|+| ++.|.||++||+|.+.+|++.|+|.+++.+..+||+
T Consensus 96 rlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK 175 (249)
T KOG0183|consen 96 RLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEK 175 (249)
T ss_pred hcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHH
Confidence 999999999999999999865 99988899999999999999 578999999999999999999999999999999999
Q ss_pred hcCCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175 172 EWHEN--LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG 227 (242)
Q Consensus 172 ~~~~~--~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~ 227 (242)
.|.++ .+..++++|++++|..+... .+++++++++++++ .+++.+++|+....
T Consensus 176 ~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l~~~~I~~~v~ 231 (249)
T KOG0183|consen 176 NYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKMLESEEIDDIVK 231 (249)
T ss_pred hcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeecCHHHHHHHHH
Confidence 99876 78899999999999998754 46799999999987 99999999987543
No 35
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=265.75 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=189.5
Q ss_pred CCCCC---CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175 10 LVGPN---DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86 (242)
Q Consensus 10 ~~~~~---~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 86 (242)
+|.|. -++||+.+|+.+++|+|||||+||||++++|.++ ++|..++...|||.|++||+|+++|+.+|.+.+..++
T Consensus 14 ~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~a 92 (254)
T KOG0184|consen 14 TFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRA 92 (254)
T ss_pred eeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHHH
Confidence 46665 4679999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175 87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL 164 (242)
Q Consensus 87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~ 164 (242)
|. ++..|+..++.++|...+++.+...+ ||..+..||||++.++++||++||+||.++|+|..+.++++|+|.|.+.
T Consensus 93 r~-ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~ 171 (254)
T KOG0184|consen 93 RD-EAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQA 171 (254)
T ss_pred HH-HHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHH
Confidence 98 47788888999999999999999987 7777779999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCccc
Q 026175 165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYAL 222 (242)
Q Consensus 165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei 222 (242)
+++.||+..-.+|+++|+++-+.++|+.+.+......-.||+.++..+ |.+..-|.||
T Consensus 172 aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el 231 (254)
T KOG0184|consen 172 AKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSEL 231 (254)
T ss_pred HHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHH
Confidence 999999998889999999999999999997544333446889998763 6555445554
No 36
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-38 Score=255.10 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=189.8
Q ss_pred CCCCCCccCccccc-cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHH
Q 026175 12 GPNDPIQRTQLPYV-TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI 90 (242)
Q Consensus 12 ~~~~~~~~~~~a~~-~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~ 90 (242)
....+.+..++|+. +|+|+|||++.|++|+|+|+|.+.+..|.+++..|||+++|+++++.+|..+|+..|...++. .
T Consensus 13 ~s~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~-r 91 (235)
T KOG0179|consen 13 SSKTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKS-R 91 (235)
T ss_pred ccCccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHH-H
Confidence 34567788899986 899999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHH
Q 026175 91 LYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPIL 169 (242)
Q Consensus 91 ~~~~~~~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~L 169 (242)
++.|+++++..|++...|++|+..+|.+| +.||.|..+++|+|+ +++.+|++||.|++.+..+.|.|+++.+++++|
T Consensus 92 ~~~Y~~~h~k~ms~~s~A~lls~~LY~kR--FFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfL 169 (235)
T KOG0179|consen 92 IKQYEHDHNKKMSIHSAAQLLSTILYSKR--FFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFL 169 (235)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHhhcc--cccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhh
Confidence 89999999999999999999999999999 899999999999995 899999999999999999999999999999999
Q ss_pred hhhcC-----------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175 170 RDEWH-----------ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI 216 (242)
Q Consensus 170 e~~~~-----------~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~ 216 (242)
++..+ ..+|+|+|++++..+|..+.+||..+++.++|+|+++||++.
T Consensus 170 DnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~ 227 (235)
T KOG0179|consen 170 DNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV 227 (235)
T ss_pred hhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence 97652 368999999999999999999999999999999999999764
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=264.42 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=196.6
Q ss_pred cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026175 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLG 103 (242)
Q Consensus 24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~ 103 (242)
..+|||.+|++++.|||+|+|+|.+.|.+|.+.+++||.+|+++++-+++|-++|++.+-+.+.+ +|+.|++++++.|+
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~k-ecRL~eLRnkeriS 146 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAK-ECRLHELRNKERIS 146 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHH-HHHHHHHhcCccee
Confidence 46899999999999999999999999999999999999999999999999999999999999988 58999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175 104 PKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGV 183 (242)
Q Consensus 104 ~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai 183 (242)
+...+++|++.+|.+|+. .+.+..+|||||+.||.||++|..|.....+-+++|||+.+|+++|++.|+++||.+||.
T Consensus 147 VsaASKllsN~~y~YkGm--GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~ 224 (285)
T KOG0175|consen 147 VSAASKLLSNMVYQYKGM--GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAY 224 (285)
T ss_pred hHHHHHHHHHHHhhccCc--chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence 999999999999998863 477899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccccccCCc
Q 026175 184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFTAFQNPT 235 (242)
Q Consensus 184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~~~~~~~ 235 (242)
+|+++++..+..||..+|+-+.++.|+++|+..+++.++.+ +..+.++..|.
T Consensus 225 ~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~e~~~~~ 277 (285)
T KOG0175|consen 225 DLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYYEVAPPE 277 (285)
T ss_pred HHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999877 45555555543
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-38 Score=251.13 Aligned_cols=191 Identities=16% Similarity=0.269 Sum_probs=181.8
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|.+++||++.|+|++|+|+....+.++..++.+|++.|++++.|+++|..+|+.++.++++++ ++.|+.++|.+++|+.
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~N-i~LYkirnGyeLSp~~ 79 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKN-IQLYKIRNGYELSPSA 79 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhh-hhHHhhhcCCcCCHHH
Confidence 568999999999999999999999999999999999999999999999999999999999986 8999999999999999
Q ss_pred HHHHHHHHHHhh-cCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175 107 LHSYLTRVMYNR-RNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK 184 (242)
Q Consensus 107 la~~l~~~~~~~-r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~ 184 (242)
+|+++++.+.+. |+ .+||.|++|+||+| +.+|.||++|..|+..+.++++.|.++.++.++|+++|+|+||.+||++
T Consensus 80 aahFtR~~La~~LRs-r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 80 AAHFTRRELAESLRS-RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHHHHhc-CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence 999999999775 54 48999999999999 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCC
Q 026175 185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQP 219 (242)
Q Consensus 185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~ 219 (242)
+..+|+.++.+|-..+..++.|.+|+|||++.+..
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~ 193 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD 193 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence 99999999999999999999999999999987754
No 39
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=246.21 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=198.7
Q ss_pred CCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHH
Q 026175 9 GLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLR 84 (242)
Q Consensus 9 ~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 84 (242)
+.|.|++ +|||+|+|+++ |-|+||++++|++|+++.|+.+ .+|+.++++..+|+|..+|+|+++|..+|.+..++
T Consensus 14 tIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~ 92 (246)
T KOG0182|consen 14 TIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQ 92 (246)
T ss_pred EEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHH
Confidence 4566774 79999999998 8899999999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccc
Q 026175 85 NLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFG 161 (242)
Q Consensus 85 ~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g 161 (242)
++|. ++..++++||.++|++.|++.+++.- |+|+..|||+||.+++.|+| +.||.||.+||.|.+..+++.+.|..
T Consensus 93 rar~-eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~K 171 (246)
T KOG0182|consen 93 RARY-EAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVK 171 (246)
T ss_pred HHHH-HHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccc
Confidence 9997 46778899999999999999999754 99999999999999999999 57899999999999999999999999
Q ss_pred hHhhHHHHhhhcCCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175 162 NHLARPILRDEWHEN--LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG 227 (242)
Q Consensus 162 ~~~a~~~Le~~~~~~--~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~ 227 (242)
...+..+||++++++ ++.+|++++++.||..+...|.. ...+||.+++++. ++.|+.+||+.++.
T Consensus 172 q~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 172 QQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred hhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 999999999999987 67999999999999999977743 4689999999975 89999999998764
No 40
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=250.40 Aligned_cols=213 Identities=19% Similarity=0.161 Sum_probs=192.1
Q ss_pred CCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHH
Q 026175 10 LVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL 86 (242)
Q Consensus 10 ~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 86 (242)
++.|++ ++||+++|++.|++.||+|.++..||++-+|.. +.| ++.++|||+|++|++++++|+++|++.|.+++
T Consensus 12 ~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~-seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Yl 88 (264)
T KOG0863|consen 12 TWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQ-SEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYL 88 (264)
T ss_pred EECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccch-hHH--HHhhheeEecccccceEEeccCcchHHHHHHH
Confidence 455664 679999999999999999999999999988865 454 46889999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHh
Q 026175 87 DELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHL 164 (242)
Q Consensus 87 r~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~ 164 (242)
|.+ +-.+++.+++++++..|...|++.+ -|||.+.|||||+++++|||+.||+||++.|+|.+.+++..+||+.++.
T Consensus 89 r~e-c~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQs 167 (264)
T KOG0863|consen 89 RQE-CLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQS 167 (264)
T ss_pred HHH-HhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhh
Confidence 984 6778899999999999999999887 4577778999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcC--CCCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCC-eEEeCCccccccc
Q 026175 165 ARPILRDEWH--ENLSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEEG-TTISQPYALKTFW 226 (242)
Q Consensus 165 a~~~Le~~~~--~~~s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~ 226 (242)
+.++||++.. ++++.||.|+.++.||+.....| .+++.+++|+|+.||. +++++.+++..+.
T Consensus 168 ARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~ 233 (264)
T KOG0863|consen 168 ARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYV 233 (264)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHH
Confidence 9999999986 59999999999999999998744 7889999999999985 8888887777543
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=247.10 Aligned_cols=199 Identities=21% Similarity=0.325 Sum_probs=185.6
Q ss_pred cccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCC
Q 026175 22 LPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNS 101 (242)
Q Consensus 22 ~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~ 101 (242)
++.+.|||++|+.++||||+++|+|.|.|+++...+..||+.|.++|+|+.+|.++|...+.+.+..+ ++.|++..++.
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~-l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSN-LELHRLNTGRK 110 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHH-HHHHHhccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999988774 78899999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175 102 LGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED 181 (242)
Q Consensus 102 i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 181 (242)
+.+-..-++|.+.+|.+.++ +++.+|++|+|..||+||++.|.|+....+|.++|||+..++++||.+|+++|+.||
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG~---IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ee 187 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQGH---IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEE 187 (271)
T ss_pred CceeeHHHHHHHHHHHhcCc---ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence 99988889999999887765 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc
Q 026175 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT 224 (242)
Q Consensus 182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~ 224 (242)
|++|+.+|+.+.+..|..+|.++++|||++.+..++.++..+.
T Consensus 188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~ 230 (271)
T KOG0173|consen 188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPN 230 (271)
T ss_pred HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCC
Confidence 9999999999999999999999999999988887776665443
No 42
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=232.36 Aligned_cols=202 Identities=19% Similarity=0.275 Sum_probs=189.5
Q ss_pred ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
.+..|||++|+.+++||||++|+|.+.|.++.++..+|+-+|.|+|+|+-||.++|.|.+.+.++-. ++.|...+++++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~-L~~~~~q~~~~p 93 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYH-LELYTIQENKPP 93 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHH-HHHhhhhcCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999974 899999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175 103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYED 181 (242)
Q Consensus 103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 181 (242)
++...|+++++..|.+|.. +.+++|||||| +.+.++|.+---|+..+.++..-|||+.+++++++..|+++|++||
T Consensus 94 ~v~~aA~l~r~~~Y~~re~---L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE 170 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYREM---LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEE 170 (224)
T ss_pred hHHHHHHHHHHHHHhCHHh---hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHH
Confidence 9999999999999998753 78999999999 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeE--EeCCccccccccc
Q 026175 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT--ISQPYALKTFWGF 228 (242)
Q Consensus 182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~--~~~~~ei~~~~~~ 228 (242)
++.+.++++..+..||-.+|+.|.+.+|+++|+. +..++++..+...
T Consensus 171 ~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v~ 219 (224)
T KOG0174|consen 171 CVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAVE 219 (224)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccccc
Confidence 9999999999999999999999999999999964 6788888775544
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=223.27 Aligned_cols=187 Identities=20% Similarity=0.293 Sum_probs=178.0
Q ss_pred cCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175 26 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK 105 (242)
Q Consensus 26 ~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~ 105 (242)
+|+++||++++++|.||+|.|.-...+..+++.+|||++.|++++|.+|++.|++.+.++++. ..+.|++++++.|.|+
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~f-r~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRF-RKNLYELREEREIKPE 85 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHH-HHhHHHhhhhcccCcH
Confidence 799999999999999999999887777889999999999999999999999999999999997 4788999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCcee-eeCeEEEccchHhhHHHHhhhcCCCCCHHHHH
Q 026175 106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNF-EDSHVATGFGNHLARPILRDEWHENLSYEDGV 183 (242)
Q Consensus 106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai 183 (242)
.++++++..+|++| +-||.+..+|||+| +++|+|...|..|+.. ..+|++.|.++...++++|..|+|+|+.|+..
T Consensus 86 ~~s~mvS~~lYekR--fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LF 163 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR--FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELF 163 (204)
T ss_pred HHHHHHHHHHHHhh--cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999 67999999999998 6899999999999964 57999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCeE
Q 026175 184 KLLEKCMRVLLYRDRSAVNKLQIAKITEEGTT 215 (242)
Q Consensus 184 ~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~ 215 (242)
+.+.++|-++.+||+++|....|.+|+||.++
T Consensus 164 etisQa~Lna~DRDalSGwGa~vyiI~kdkv~ 195 (204)
T KOG0180|consen 164 ETISQALLNAVDRDALSGWGAVVYIITKDKVT 195 (204)
T ss_pred HHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence 99999999999999999999999999999854
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=3.2e-32 Score=222.12 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=145.6
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPK 105 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~ 105 (242)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.+.++.+ ++.|+. + + ++
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~-~~~y~~--~--~-~~ 74 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAK-LEEHQG--N--L-LR 74 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHH-HHHccC--c--c-HH
Confidence 79999999999999999999999999999999999999 9999999999999999999999984 777652 2 2 46
Q ss_pred HHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeee--CeEEEccchHhhHHHHhhhcC-CCCCHHHH
Q 026175 106 ELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEWH-ENLSYEDG 182 (242)
Q Consensus 106 ~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~-~~~s~eea 182 (242)
..++++...... + ..+|+.+++|++ |. |+||.+||.|+..+. ++.|+|||+.+++++|+++|+ ++| ||
T Consensus 75 ~~a~l~~~l~~~-~-~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA 145 (172)
T PRK05456 75 AAVELAKDWRTD-R-YLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA 145 (172)
T ss_pred HHHHHHHHHHhc-c-CCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence 666665443211 1 136788999994 33 799999999999766 799999999999999999999 999 99
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAK 208 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~i 208 (242)
++++++|++.+.+||..++++|+|-.
T Consensus 146 ~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 146 EEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999999999998864
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.98 E-value=4.5e-31 Score=214.22 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=142.2
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecC-ceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGK-HSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+++|..+|+++|.++++.+ ++.|+.+.++ .
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~-~~~y~~~~~~-----~ 74 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAK-LEQYPGNLLR-----A 74 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHH-HHHhhchHHH-----H
Confidence 699999999999999999999999999999999999999 99999999999999999999984 8888876563 4
Q ss_pred HHHHHHHHHHhhcCCCCCcc-eEEEEEEEECCcEEEEEECCCCceeeeC--eEEEccchHhhHHHHhhhcCCC-CCHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLW-NSLVLGGVKNGQKYLGMVSMIGVNFEDS--HVATGFGNHLARPILRDEWHEN-LSYEDG 182 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~-vs~lvaG~D~~~p~Ly~idp~G~~~~~~--~~aiG~g~~~a~~~Le~~~~~~-~s~eea 182 (242)
+++++...+ ..+ ++|+. +.+|++++ ++||.+||.|...+.+ +.++|||+.+++++||..|+++ || +
T Consensus 75 aa~l~~~l~-~~~--~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~ 144 (171)
T cd01913 75 AVELAKDWR-TDR--YLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---A 144 (171)
T ss_pred HHHHHHHHH-hcc--CcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---H
Confidence 455544443 222 34555 66666543 3999999999999984 9999999999999999999995 99 5
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAK 208 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~i 208 (242)
.+++.++++.+.+||..++++|+|-.
T Consensus 145 ~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 145 EEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 69999999999999999999998864
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.7e-30 Score=210.83 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=141.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++|+++|..+|+++|.++++.+ ++.|+... .+.
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~-~~~y~~~~-----~~~ 74 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAK-LEEYQGNL-----TRA 74 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHH-HHHccCch-----HHH
Confidence 6999999999999999999999999999999999999 5999999999999999999999984 77766522 467
Q ss_pred HHHHHHHHHHhhcCCCCC-cceEEEEEEEECCcEEEEEECCCCceeee--CeEEEccchHhhHHHHhhhc-CCCCCHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDP-LWNSLVLGGVKNGQKYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEW-HENLSYEDG 182 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP-~~vs~lvaG~D~~~p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~-~~~~s~eea 182 (242)
+++++++.. ..+ ++| +.+.+|++|+ ++||.+||.|.+.+. ++.++|||+.+++++||..| +++|+ |
T Consensus 75 ~a~l~~~~~-~~~--~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a 144 (171)
T TIGR03692 75 AVELAKDWR-TDR--YLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---A 144 (171)
T ss_pred HHHHHHHHh-hcc--cccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence 777776631 111 233 3466776543 499999999999996 69999999999999999999 57788 9
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEE
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAK 208 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~i 208 (242)
++++.++++.+.+||..++++|+|-.
T Consensus 145 ~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 145 EEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999999998864
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=9.6e-29 Score=197.20 Aligned_cols=162 Identities=26% Similarity=0.319 Sum_probs=152.6
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++|||+||+|++.+.+......+.+|++.++++++++++|..+|++.+.+++++ .++.|+++++.++++..+
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLRE-ALQLYRLRYGEPISVVAL 79 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence 5899999999999999999987766657899999999999999999999999999999998 488899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++.+++.++..+. +||+++++|++|+|+++|+||.+||+|.+.+. .++++|+++..+.++|++.++++|+.+|+++++
T Consensus 80 ~~~~~~~~~~~~~-~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (164)
T cd01901 80 AKELAKLLQVYTQ-GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELA 158 (164)
T ss_pred HHHHHHHHHHhcC-CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999977654 79999999999999889999999999999999 999999999999999999999999999999999
Q ss_pred HHHHH
Q 026175 187 EKCMR 191 (242)
Q Consensus 187 ~~~l~ 191 (242)
.+||+
T Consensus 159 ~~~l~ 163 (164)
T cd01901 159 LKALK 163 (164)
T ss_pred HHHHh
Confidence 99985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-14 Score=113.60 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=131.7
Q ss_pred ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecC-ceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC-
Q 026175 25 VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGK-HSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL- 102 (242)
Q Consensus 25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i- 102 (242)
-++||+|+++-++-|+||+|.++|.|..+...+..|+.+|.+ .++.|++|.++|+..|.+.+.. .++.|. |.-.
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~-kle~~~---g~L~r 77 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEA-KLEQYQ---GDLFR 77 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHH-HHHHcc---CcHHH
Confidence 378999999999999999999999999999999999888876 7999999999999999999987 366543 2211
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceee--eCeEEEccchHhhHHHHhhhcC-CCCCH
Q 026175 103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE--DSHVATGFGNHLARPILRDEWH-ENLSY 179 (242)
Q Consensus 103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~--~~~~aiG~g~~~a~~~Le~~~~-~~~s~ 179 (242)
..-.+++..+.--|- |-+..-+|++ |+ -.+|-+...|-..+ .+..|||||..++++.....++ +++|
T Consensus 78 aavelaKdwr~Dk~l-----r~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls- 147 (178)
T COG5405 78 AAVELAKDWRTDKYL-----RKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS- 147 (178)
T ss_pred HHHHHHHhhhhhhHH-----HHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence 233444444433232 3366667776 33 35666777887665 3589999999999998888875 4788
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175 180 EDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT 210 (242)
Q Consensus 180 eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~ 210 (242)
|.+++.++|+.+.+-+..++++|.|..+.
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 66689999999988788888888887664
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.7e-11 Score=98.96 Aligned_cols=184 Identities=19% Similarity=0.201 Sum_probs=141.6
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEec---Cc-eEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIG---KH-SLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
++.|||++-..|.|+++|+|...|.- ..+..+|+|... ++ +++..+|..+-.+.+++.+.+ ..+ .+.+..+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e-~~~---~d~~~~L 75 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDE-RIQ---RDDGDSL 75 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHH-Hhh---ccchhhh
Confidence 57899999999999999999764432 234667776543 33 677889999999999999876 333 2233333
Q ss_pred ----CHHHHHHHHHHHH---Hhhc-----CCCCCcceEEEEEEEE-CCcEEEEEECCCCceee----eCeEEEccchHhh
Q 026175 103 ----GPKELHSYLTRVM---YNRR-----NKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFE----DSHVATGFGNHLA 165 (242)
Q Consensus 103 ----~~~~la~~l~~~~---~~~r-----~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~----~~~~aiG~g~~~a 165 (242)
++-..+.++.... +.+- +..--|.||+|++|.= .+.|.||.+-|.|++.+ .+|.-+|. ..+-
T Consensus 76 ~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYG 154 (255)
T COG3484 76 LNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYG 154 (255)
T ss_pred hcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccC
Confidence 4555555555433 2221 0112388999999986 45689999999999876 48999999 5679
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175 166 RPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI 216 (242)
Q Consensus 166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~ 216 (242)
+++|++.+..+++++|+.+.++-+|....+.+...|-++++.++.+|.++.
T Consensus 155 KPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v 205 (255)
T COG3484 155 KPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSV 205 (255)
T ss_pred chhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceee
Confidence 999999999999999999999999999999898889999999999997554
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.24 E-value=0.058 Score=44.52 Aligned_cols=153 Identities=17% Similarity=0.260 Sum_probs=90.9
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+.+||..+++|+|||.|+|. ++|-|.-.....|-+ ..| .|.--+=+.
T Consensus 1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEe---------eLY-sG~IktdeE 48 (194)
T PF09894_consen 1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEE---------ELY-SGKIKTDEE 48 (194)
T ss_pred CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHH---------HHh-CCccCCHHH
Confidence 578999999999999999982 134555444332222 112 354445666
Q ss_pred HHHHHHHHH-----HhhcCCCCCcceEEEEEEEE------CCcEEEEEEC-------CCCceeee-------CeEEEccc
Q 026175 107 LHSYLTRVM-----YNRRNKFDPLWNSLVLGGVK------NGQKYLGMVS-------MIGVNFED-------SHVATGFG 161 (242)
Q Consensus 107 la~~l~~~~-----~~~r~~~rP~~vs~lvaG~D------~~~p~Ly~id-------p~G~~~~~-------~~~aiG~g 161 (242)
|.+....+= ...|...+-.+= +|++-+- ...-++|-.- -.|.-... .....|..
T Consensus 49 L~kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 49 LLKKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence 766655421 111211222322 3333332 1223454422 12221111 12333421
Q ss_pred --hHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q 026175 162 --NHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE 212 (242)
Q Consensus 162 --~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~ 212 (242)
.+.+...|.++|++.|+++++..+...+|+.+...-+.....+++...++.
T Consensus 128 ~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 128 FTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 245777899999999999999999999999998767777778898887764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.73 E-value=1.1 Score=38.39 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=93.9
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+.+|+..++||.|||.|+|.- ++-|.-.|-..|-+.| | .|.--+-+.
T Consensus 1 MtLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEekL---------Y-sGeIkteEE 48 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEKL---------Y-SGEIKTEEE 48 (293)
T ss_pred CeEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHHh---------h-cCccccHHH
Confidence 5788999999999999999821 2445555533322211 2 466667778
Q ss_pred HHHHHHHHH----Hh-hcCCCCCcceEEEEEEEECC------cEEEEEECCCCcee--e--------------eCeEEEc
Q 026175 107 LHSYLTRVM----YN-RRNKFDPLWNSLVLGGVKNG------QKYLGMVSMIGVNF--E--------------DSHVATG 159 (242)
Q Consensus 107 la~~l~~~~----~~-~r~~~rP~~vs~lvaG~D~~------~p~Ly~idp~G~~~--~--------------~~~~aiG 159 (242)
|+++...+- .+ -|...|-..=+++++-+..- .-++|-+- |+|. + ....+.|
T Consensus 49 L~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~--Ga~aIvel~gs~vts~~~g~g~aiIv~G 126 (293)
T COG4079 49 LARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATA--GAYAIVELRGSEVTSTSQGKGSAIIVFG 126 (293)
T ss_pred HHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecC--CceEEEEecCCeeEeeecCCCceEEEEC
Confidence 877776531 11 12223444334455444321 12344322 3321 1 1223444
Q ss_pred c--chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q 026175 160 F--GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE 212 (242)
Q Consensus 160 ~--g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~ 212 (242)
. -.+.+..+|.+.|.+.++++++.++...+|..+...-+..+...++..+.+.
T Consensus 127 nk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 127 NKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred cHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 2 1234567899999999999999999999999998666666778999988874
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=87.82 E-value=0.88 Score=35.38 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=41.2
Q ss_pred EEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175 140 YLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKL 185 (242)
Q Consensus 140 ~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l 185 (242)
+| .+|-+|...+.+|-..|.|+..+-+.+-..|-.++++|||.++
T Consensus 70 qI-kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 70 QI-KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EE-EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 44 7888999999999999999999999999999999999999765
No 53
>PRK09732 hypothetical protein; Provisional
Probab=47.77 E-value=54 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 175 ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 175 ~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
+.||++.|.+++..++..+.+. +-++.|+|++..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCC
Confidence 4699999999999999999753 45899999999983
No 54
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=45.49 E-value=53 Score=23.33 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCc
Q 026175 175 ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPY 220 (242)
Q Consensus 175 ~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ 220 (242)
..+|.+||...++..|..... ++.=.+++++.+|.....|.
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEESS
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEcCC
Confidence 469999999999999988753 23348999999998777665
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.07 E-value=17 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=23.2
Q ss_pred EEccchHhhHHHHhhhc-CCCCCHHHHHHHHHH
Q 026175 157 ATGFGNHLARPILRDEW-HENLSYEDGVKLLEK 188 (242)
Q Consensus 157 aiG~g~~~a~~~Le~~~-~~~~s~eeai~l~~~ 188 (242)
+.|.....+...+.+.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35777788888888777 889999998777654
No 56
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=42.84 E-value=72 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q 026175 174 HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG 213 (242)
Q Consensus 174 ~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g 213 (242)
.+.+++++|.+++..++..+.+ + +.++.|.|++.+|
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~-~---g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ-L---GVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH-h---CCceEEEEECCCC
Confidence 3579999999999999999864 2 6789999999998
No 57
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=41.91 E-value=44 Score=25.59 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 176 NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 176 ~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
.+|.++|.+++..+++.+.++ +-++-|+|++..|.
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGH 36 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCC
Confidence 478999999999999999864 34588999999983
No 58
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.16 E-value=46 Score=23.82 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCccccc
Q 026175 174 HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKT 224 (242)
Q Consensus 174 ~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~ 224 (242)
.+.++.++..+.+...... ..+.++.+.+++.+| +.+.+.+|++.
T Consensus 17 d~~~s~e~L~~~v~~~c~~------~~~q~ft~kw~DEEGDp~tiSS~~EL~E 63 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF------HNDQPFTLKWIDEEGDPCTISSQMELEE 63 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC------CCCCcEEEEEECCCCCceeecCHHHHHH
Confidence 4567777766664444433 224689999999987 78888777654
No 59
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=28.90 E-value=2.2e+02 Score=24.85 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=39.6
Q ss_pred eEEEccchHhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 155 HVATGFGNHLARPILRDEW----HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 155 ~~aiG~g~~~a~~~Le~~~----~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
..++|.|..+++..+-... +.+++++||.+.++.-+..... ..+...-+..|+++|.
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 5689999998877655433 4589999998887766544321 2344567888899873
No 60
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=25.15 E-value=2.2e+02 Score=21.53 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred EEECCC-CceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 026175 142 GMVSMI-GVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLL 194 (242)
Q Consensus 142 y~idp~-G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~ 194 (242)
..+|.. |...+..|.+.|..-..+-.-+=-.+-.+.+++||.++..+-+....
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l 95 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEAL 95 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHH
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 367887 77888899999987777655544444568999999888766665554
No 61
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=25.09 E-value=2.2e+02 Score=23.87 Aligned_cols=48 Identities=21% Similarity=0.069 Sum_probs=32.4
Q ss_pred cEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHH
Q 026175 138 QKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCM 190 (242)
Q Consensus 138 ~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l 190 (242)
.|.| .++..-. .-....++|.=.+...-+|..+ +++.+||.+++.++|
T Consensus 182 ~P~L-eI~~~dV-~a~H~AtvG~idee~LFYL~SR---Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 182 IPEL-EIDEDDV-KASHGATVGQIDEEQLFYLMSR---GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEE-EE-SSSE-EEEEEEEEEES-HHHHHHHHCT---T--HHHHHHHHHHHH
T ss_pred EEhH-hcccCCc-EEEEeeEeecCCHHHHHHHHHc---CCCHHHHHHHHHhhC
Confidence 4666 3443333 2335678899899999999875 999999999998775
No 62
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=23.98 E-value=70 Score=18.10 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=15.8
Q ss_pred EEEEEECCcEEEEEECCCCc
Q 026175 130 VLGGVKNGQKYLGMVSMIGV 149 (242)
Q Consensus 130 lvaG~D~~~p~Ly~idp~G~ 149 (242)
.+.|.-.+.|+||.+-.+|.
T Consensus 7 ~v~G~rPg~pfl~~IpatG~ 26 (29)
T PF10632_consen 7 RVFGARPGSPFLFTIPATGE 26 (29)
T ss_pred cEEcccCCCcEEEEeeccCc
Confidence 45577778899999988874
No 63
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=23.85 E-value=2.8e+02 Score=24.25 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=38.3
Q ss_pred CeEEEccchHhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 154 SHVATGFGNHLARPILRDEW----HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 154 ~~~aiG~g~~~a~~~Le~~~----~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
-..++|.|..+++..+-... +.+++++||.+.++.-+.... +...-+..|+++|.
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 36799999998877665443 468999999887766654332 23456777888873
No 64
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=23.75 E-value=3e+02 Score=23.90 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=38.3
Q ss_pred CeEEEccchHhhHHHHhhhc----CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 154 SHVATGFGNHLARPILRDEW----HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 154 ~~~aiG~g~~~a~~~Le~~~----~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
-..++|.|..+++..|-... +.++++++|.+.+++-|... .+...-+..++++|.
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~ 233 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGE 233 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCC
Confidence 35789999999887665443 45799999888766655443 123456778888874
No 65
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.04 E-value=2e+02 Score=20.68 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=25.7
Q ss_pred HhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 026175 163 HLARPILRDEWHENLSYEDGVKLLEKCMRVLL 194 (242)
Q Consensus 163 ~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~ 194 (242)
..+..+|++...|++|+++.+++=..++....
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999988777766553
No 66
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=22.84 E-value=1.5e+02 Score=25.91 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=28.9
Q ss_pred EEEEECCcEEEEEECCCCceeee---CeEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175 131 LGGVKNGQKYLGMVSMIGVNFED---SHVATGFGNHLARPILRDEWHENLSYEDGVKL 185 (242)
Q Consensus 131 vaG~D~~~p~Ly~idp~G~~~~~---~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l 185 (242)
++|.| -.+..+|..|..... +.||.|.|+- ...+.+.. +++++|.-++
T Consensus 104 IGGQD---~K~I~~~~~G~v~~f~MNdkCAAGTG~F-Le~~A~~L---~i~leel~~~ 154 (262)
T TIGR02261 104 IGALH---GRAIRMDERGKVEAYKMTSQCASGSGQF-LENIARYL---GIAQDEIGSL 154 (262)
T ss_pred eCCCc---eEEEEEcCCCcEeeEEecCcccccccHH-HHHHHHHh---CCCHHHHHHH
Confidence 55655 456778989986553 7789999874 33332221 4555554444
No 67
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=22.54 E-value=2.4e+02 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred EECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHH
Q 026175 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMR 191 (242)
Q Consensus 143 ~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~ 191 (242)
.+| .|......|-..|.+...+-+.+=..+-.+.|.+||+++......
T Consensus 48 kv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~ 95 (150)
T COG0822 48 KVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTD 95 (150)
T ss_pred EEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445 777888899999988888877777777789999999999843333
No 68
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=21.15 E-value=1.7e+02 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCC
Q 026175 181 DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQP 219 (242)
Q Consensus 181 eai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~ 219 (242)
|++...++.|....+.|......+++.|||-+| .+...|
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 467777788888778888888899999999986 444433
No 69
>PRK02487 hypothetical protein; Provisional
Probab=21.07 E-value=2.5e+02 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q 026175 174 HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG 213 (242)
Q Consensus 174 ~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g 213 (242)
.+.++.++|.+++..+++.+.++ +.++-|.|++ .|
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G 54 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NG 54 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CC
Confidence 47899999999999999999753 4578898885 66
No 70
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=21.00 E-value=1.2e+02 Score=19.58 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q 026175 176 NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE 212 (242)
Q Consensus 176 ~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~ 212 (242)
+-|+|||++.+..-|..- -+.+++-||.+.
T Consensus 4 gkt~eeAi~~A~~~l~~~-------~~~~~~eVi~~g 33 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGVP-------REELEYEVIEEG 33 (52)
T ss_dssp ESSHHHHHHHHHHHTT---------GGGEEEEEEE--
T ss_pred ECCHHHHHHHHHHHhCCC-------hHHEEEEEEEcC
Confidence 357889988877766554 346899999873
No 71
>PRK11325 scaffold protein; Provisional
Probab=20.07 E-value=2.6e+02 Score=21.26 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=37.1
Q ss_pred EECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 026175 143 MVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRV 192 (242)
Q Consensus 143 ~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~ 192 (242)
.+|+.|...+..|.+.|.....+-..+=..+-.+.+++||..+....+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 56656778888899999877776665555555689999999887765544
Done!