Query 026175
Match_columns 242
No_of_seqs 118 out of 1107
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_N 20S proteasome; cell cy 100.0 4.2E-52 1.4E-56 351.2 25.3 215 20-235 1-218 (219)
2 1g0u_M Proteasome component PR 100.0 4.1E-51 1.4E-55 354.8 24.1 221 15-236 29-262 (266)
3 1ryp_N 20S proteasome; multica 100.0 9.7E-51 3.3E-55 346.1 24.4 215 20-235 1-228 (233)
4 1ryp_A 20S proteasome; multica 100.0 5.6E-51 1.9E-55 349.6 21.0 220 5-227 4-237 (243)
5 1iru_B 20S proteasome; cell cy 100.0 1.5E-50 5E-55 344.9 18.6 219 6-227 7-230 (233)
6 1yar_A Proteasome alpha subuni 100.0 1.2E-49 4E-54 339.3 21.9 218 5-225 9-232 (233)
7 1ryp_C 20S proteasome; multica 100.0 3.7E-49 1.3E-53 338.4 22.0 222 5-227 6-239 (244)
8 1iru_A 20S proteasome; cell cy 100.0 5.5E-49 1.9E-53 337.8 21.6 220 5-227 10-240 (246)
9 1iru_C 20S proteasome; cell cy 100.0 6.2E-49 2.1E-53 340.2 20.4 224 5-229 6-240 (261)
10 1yar_H Proteasome beta subunit 100.0 3.7E-48 1.3E-52 326.8 23.7 201 23-227 4-205 (217)
11 1ryp_F 20S proteasome; multica 100.0 1.7E-48 5.9E-53 332.1 21.7 216 5-225 6-232 (233)
12 3h4p_A Proteasome subunit alph 100.0 7.8E-49 2.7E-53 340.1 19.7 221 5-229 13-240 (264)
13 1iru_E 20S proteasome; cell cy 100.0 1.1E-48 3.9E-53 334.9 19.8 220 5-227 9-239 (241)
14 1ryp_E 20S proteasome; multica 100.0 1.2E-48 4E-53 334.9 19.6 218 7-227 3-233 (242)
15 1j2q_H Proteasome beta subunit 100.0 2.1E-47 7.1E-52 318.7 25.5 197 28-227 1-198 (202)
16 3unf_H Proteasome subunit beta 100.0 3.4E-47 1.2E-51 324.4 27.2 203 28-234 1-203 (234)
17 1iru_D 20S proteasome; cell cy 100.0 2.3E-48 7.9E-53 334.3 19.4 221 4-229 3-232 (248)
18 1ryp_D 20S proteasome; multica 100.0 6E-48 2.1E-52 330.3 21.4 217 7-227 5-232 (241)
19 1iru_F 20S proteasome; cell cy 100.0 5.8E-48 2E-52 334.5 21.5 221 5-229 7-236 (263)
20 1iru_G 20S proteasome; cell cy 100.0 3.7E-48 1.3E-52 334.2 20.0 223 5-229 8-239 (254)
21 1j2p_A Alpha-ring, proteasome 100.0 5.6E-48 1.9E-52 331.5 20.7 219 5-227 9-234 (246)
22 3h4p_a Proteasome subunit beta 100.0 1.2E-47 4.3E-52 324.1 22.2 202 27-231 1-204 (219)
23 1ryp_G 20S proteasome; multica 100.0 1.2E-47 4.2E-52 329.1 22.4 217 6-224 6-233 (244)
24 3nzj_K Proteasome component PR 100.0 2.6E-47 8.8E-52 333.7 24.5 214 20-236 68-283 (287)
25 3nzj_H Proteasome component PU 100.0 1.6E-46 5.5E-51 324.8 27.3 206 20-229 22-228 (261)
26 1ryp_L 20S proteasome; multica 100.0 1.4E-46 4.9E-51 315.9 24.8 206 28-236 1-208 (212)
27 3nzj_F Proteasome component C1 100.0 4.1E-47 1.4E-51 332.6 21.0 215 6-222 10-235 (288)
28 1iru_L 20S proteasome; cell cy 100.0 2.3E-46 7.7E-51 312.8 24.4 198 28-228 1-198 (204)
29 1ryp_I 20S proteasome; multica 100.0 6.4E-46 2.2E-50 314.2 27.3 198 28-229 1-199 (222)
30 1ryp_B 20S proteasome; multica 100.0 7.2E-47 2.4E-51 325.4 20.7 219 5-226 6-247 (250)
31 1ryp_K 20S proteasome; multica 100.0 1.3E-45 4.5E-50 306.7 25.9 194 27-221 1-196 (198)
32 1iru_M 20S proteasome; cell cy 100.0 2.7E-45 9.2E-50 308.2 27.1 194 21-217 2-206 (213)
33 1iru_H 20S proteasome; cell cy 100.0 5.1E-45 1.8E-49 304.8 26.9 197 28-228 1-200 (205)
34 1iru_I 20S proteasome; cell cy 100.0 2.9E-45 9.9E-50 312.5 25.8 203 28-234 1-205 (234)
35 1ryp_H 20S proteasome; multica 100.0 3.8E-45 1.3E-49 305.7 25.7 193 20-217 2-195 (205)
36 1ryp_M 20S proteasome; multica 100.0 7.4E-45 2.5E-49 307.6 26.0 194 21-217 2-215 (222)
37 3mi0_A Proteasome subunit alph 100.0 8.6E-46 2.9E-50 318.1 20.0 204 15-230 15-238 (248)
38 1iru_K 20S proteasome; cell cy 100.0 1E-44 3.5E-49 302.2 25.6 192 27-220 1-194 (201)
39 3unf_N Proteasome subunit beta 100.0 1.3E-44 4.5E-49 300.9 25.5 194 28-227 1-198 (199)
40 1q5r_H Proteasome beta-type su 100.0 5E-45 1.7E-49 320.2 22.1 207 20-227 58-280 (294)
41 1iru_J 20S proteasome; cell cy 100.0 3.2E-44 1.1E-48 300.0 25.5 189 25-216 6-197 (205)
42 1ryp_J 20S proteasome; multica 100.0 7.9E-44 2.7E-48 297.4 26.5 189 24-216 5-196 (204)
43 1q5q_H Proteasome beta-type su 100.0 3.4E-44 1.1E-48 306.1 22.1 199 28-227 1-215 (235)
44 1q5q_A Proteasome alpha-type s 100.0 7.8E-45 2.7E-49 314.2 18.0 202 15-228 15-234 (259)
45 2jay_A Proteasome; hydrolase; 100.0 3.9E-44 1.3E-48 314.2 18.0 210 17-228 48-273 (291)
46 2z3b_A ATP-dependent protease 100.0 7.9E-36 2.7E-40 244.7 19.8 171 25-210 3-180 (180)
47 1m4y_A ATP-dependent protease 100.0 1.8E-35 6.3E-40 240.4 19.2 167 28-209 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 2.9E-35 1E-39 239.9 19.6 168 28-210 1-173 (174)
49 3ub6_A Chemoreceptor TLPB; hom 33.4 86 0.0029 24.2 5.9 50 165-219 36-85 (181)
50 3fpw_A HBPS, extracellular HAE 29.5 85 0.0029 24.9 5.2 37 174-214 62-98 (192)
51 2a2l_A Unknown; structural gen 28.4 52 0.0018 24.7 3.6 35 175-213 10-44 (145)
52 3jtz_A Integrase; four strande 24.5 43 0.0015 22.9 2.3 54 135-194 22-76 (88)
No 1
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=4.2e-52 Score=351.22 Aligned_cols=215 Identities=44% Similarity=0.816 Sum_probs=206.7
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh-hc
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW-DD 98 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~-~~ 98 (242)
+.+|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.+++|. .++.|++ ++
T Consensus 1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~ 79 (219)
T 1iru_N 1 TQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQ-MVIDEELLGD 79 (219)
T ss_dssp CCSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHH-HHHHHHHHCS
T ss_pred CCCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHH-HHHHHHHHHc
Confidence 357899999999999999999999999998999999999999999999999999999999999999998 4888887 89
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCC--C
Q 026175 99 GNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--N 176 (242)
Q Consensus 99 g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~--~ 176 (242)
+.+++++.+|+++++.+|++|+++|||+|++||+|+|+++|+||++||+|++.+++++|+|+|+++++++||+.|++ +
T Consensus 80 ~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 80 GHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999888899999999999998899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCCc
Q 026175 177 LSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPT 235 (242)
Q Consensus 177 ~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~~ 235 (242)
||++||++++++||..+.++|..++++++|++|+++|++.+++++|+.+|.+++|+++-
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~~~~~~~~~ 218 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWDIAHMISGF 218 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCGGGGCSCC-
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhhHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 2
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=4.1e-51 Score=354.82 Aligned_cols=221 Identities=37% Similarity=0.741 Sum_probs=208.5
Q ss_pred CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN 94 (242)
Q Consensus 15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~ 94 (242)
+|++++++|+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.|++++|. .++.|
T Consensus 29 ~~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~-~~~~~ 107 (266)
T 1g0u_M 29 SPMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKD-LVTEN 107 (266)
T ss_dssp -----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHH-HHHHH
T ss_pred cchhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHH-HHHHh
Confidence 68999999999999999999999999999999998999999999999999999999999999999999999998 48888
Q ss_pred hh-----hcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHH
Q 026175 95 MW-----DDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPI 168 (242)
Q Consensus 95 ~~-----~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~ 168 (242)
++ +++++++++.+++++++.+|++|+++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+.+++++
T Consensus 108 ~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 108 AYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp HTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred hhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 87 8999999999999999999999887899999999999996 49999999999999999999999999999999
Q ss_pred HhhhcCC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc-cccccccCCcc
Q 026175 169 LRDEWHE-----NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGFTAFQNPTA 236 (242)
Q Consensus 169 Le~~~~~-----~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~-~~~~~~~~~~~ 236 (242)
||+.|++ +||++||++++++||+.+.+||..++++++|++|+++ |++.++++||+.+ |++++|+++..
T Consensus 188 Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~~~~~~~ 262 (266)
T 1g0u_M 188 LRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG 262 (266)
T ss_dssp HTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGGGCCSSS
T ss_pred HHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHhhhcCcC
Confidence 9999999 9999999999999999999999999999999999999 9999999999998 99999998864
No 3
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=9.7e-51 Score=346.06 Aligned_cols=215 Identities=38% Similarity=0.746 Sum_probs=206.5
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh---
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW--- 96 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~--- 96 (242)
+.+|+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.+++|. .++.|++
T Consensus 1 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~ 79 (233)
T 1ryp_N 1 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKD-LVTENAYDNP 79 (233)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHH-HHHHHHTTCT
T ss_pred CcccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHhhccc
Confidence 357899999999999999999999999998999999999999999999999999999999999999998 4888988
Q ss_pred --hcCCCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhc
Q 026175 97 --DDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEW 173 (242)
Q Consensus 97 --~~g~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~ 173 (242)
+++++++++.+|+++++.+|++|+++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|
T Consensus 80 ~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 80 LADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999999999887899999999999996 4999999999999999999999999999999999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CeEEeCCcccccc-cccccccCCc
Q 026175 174 HE-----NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE-GTTISQPYALKTF-WGFTAFQNPT 235 (242)
Q Consensus 174 ~~-----~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~-g~~~~~~~ei~~~-~~~~~~~~~~ 235 (242)
++ +||++||++++++||+.+.+||..++++++|++|+++ |++.++++||+.+ |.+++|+++.
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~~~~~~ 228 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGY 228 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSS
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhhhccCc
Confidence 99 9999999999999999999999999999999999999 9999999999998 9999999875
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.6e-51 Score=349.58 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=208.7
Q ss_pred hhccCCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ 80 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 80 (242)
|-...+|.|+| +|||+++|+++ |+|+|||+++||||||+|+|.+ ++++.+++.+|||+|++|++++++|+.+|++
T Consensus 4 d~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 82 (243)
T 1ryp_A 4 DRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82 (243)
T ss_dssp GGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHH
T ss_pred CCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHH
Confidence 34567899986 68999999999 9999999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175 81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA 157 (242)
Q Consensus 81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a 157 (242)
.+.+++|. .++.|+++++++++++.+|+++++.+ |++|+++|||+|++||||+|+ ++|+||++||+|++.+++++|
T Consensus 83 ~l~~~~r~-~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a 161 (243)
T 1ryp_A 83 NAALRAKA-EAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATA 161 (243)
T ss_dssp HHHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEE
Confidence 99999998 58899999999999999999999999 999988999999999999995 899999999999999999999
Q ss_pred EccchHhhHHHHhhhcCC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175 158 TGFGNHLARPILRDEWHE-------NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 158 iG~g~~~a~~~Le~~~~~-------~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
+|+|++.++++||+.|++ +||++||++++++||..+.++| .++++++|++|+++|+++++++||+..++
T Consensus 162 ~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 162 TGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEERLV 237 (243)
T ss_dssp ESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999 78999999999999999999999988654
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.5e-50 Score=344.88 Aligned_cols=219 Identities=19% Similarity=0.270 Sum_probs=206.7
Q ss_pred hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175 6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82 (242)
Q Consensus 6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 82 (242)
-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.+
T Consensus 7 ~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 85 (233)
T 1iru_B 7 FSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVL 85 (233)
T ss_dssp SBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHH
T ss_pred CCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHH
Confidence 3456799995 579999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175 83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF 160 (242)
Q Consensus 83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~ 160 (242)
.++++. .++.|+++++.+++++.+++++++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+
T Consensus 86 ~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~ 164 (233)
T 1iru_B 86 VHRARK-LAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGK 164 (233)
T ss_dssp HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECC
Confidence 999998 48899999999999999999999998 777777899999999999998899999999999999999999999
Q ss_pred chHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175 161 GNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 161 g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
|+++++++||++|+++||++||++++++||+.+.++| .++++++|++|+++|++.++++||+.+++
T Consensus 165 gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~~~ 230 (233)
T 1iru_B 165 NYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDYLA 230 (233)
T ss_dssp THHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999999 77899999999999999999999987654
No 6
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.2e-49 Score=339.33 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=202.2
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.
T Consensus 9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 87 (233)
T 1yar_A 9 SRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLIDDYVAAVTSGLVADARV 87 (233)
T ss_dssp ----CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCC-TTBCSTTCCSEEEEETTEEEEEEEBHHHHHH
T ss_pred CCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCc-ccccccccCeEEEecCCEEEEEeeCHHHHHH
Confidence 44567899996 6789999999999999999999999999999996 5778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
+.++++. .++.|+++++++++++.+|+++++.++ ++++++|||+|++||+|+|+++|+||.+||+|++.+++++|+|
T Consensus 88 l~~~~~~-~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG 166 (233)
T 1yar_A 88 LVDFARI-SAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIG 166 (233)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEc
Confidence 9999998 488999999999999999999999985 5666789999999999999889999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccc
Q 026175 160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTF 225 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~ 225 (242)
+|+++++++||+.|+++||++||++++++||+.+.++|. ++++++|++|+++| ++.++++||+..
T Consensus 167 ~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 167 SGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred CCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 999999999999999999999999999999999999986 79999999999998 999999998764
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.7e-49 Score=338.36 Aligned_cols=222 Identities=14% Similarity=0.196 Sum_probs=206.0
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 85 (244)
T 1ryp_C 6 DSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEI 85 (244)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHH
T ss_pred CCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHH
Confidence 34556888986 689999999999999999999999999999999776555889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT 158 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai 158 (242)
+.++++. .++.|+++++++++++.+++++++.+ |+++.++|||+|++||+|+| +++|+||++||+|++.+++++|+
T Consensus 86 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (244)
T 1ryp_C 86 LINTARI-HAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISV 164 (244)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEE
T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEE
Confidence 9999998 58899999999999999999999998 66777789999999999999 88999999999999999999999
Q ss_pred ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc--CCC----eEEeCCcccccccc
Q 026175 159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT--EEG----TTISQPYALKTFWG 227 (242)
Q Consensus 159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~--k~g----~~~~~~~ei~~~~~ 227 (242)
|+|+++++++||+.|+++|+++||++++++||..+.++|..++++++|++|+ ++| ++.++++||+..++
T Consensus 165 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~ 239 (244)
T 1ryp_C 165 GANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILV 239 (244)
T ss_dssp STTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999999966789999999999 986 68999999987654
No 8
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=5.5e-49 Score=337.76 Aligned_cols=220 Identities=13% Similarity=0.162 Sum_probs=206.5
Q ss_pred hhccCCCCCCC---CCccCcccccc-CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVT-GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ 80 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~-g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 80 (242)
|-...+|.|++ +|||+++|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++
T Consensus 10 d~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 88 (246)
T 1iru_A 10 DRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSR 88 (246)
T ss_dssp TTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHH
T ss_pred CCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHH
Confidence 44557899986 68999999999 9999999999999999999998 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175 81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA 157 (242)
Q Consensus 81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a 157 (242)
.+.++++. .++.|+++++++++++.+|+++++.+ |++++++|||+|++||+|+|+ ++|+||++||+|++.+++++|
T Consensus 89 ~l~~~~~~-~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 167 (246)
T 1iru_A 89 SQVQRARY-EAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 167 (246)
T ss_dssp HHHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEE
Confidence 99999998 58899999999999999999999874 888888899999999999995 899999999999999999999
Q ss_pred EccchHhhHHHHhhhcCC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175 158 TGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG 227 (242)
Q Consensus 158 iG~g~~~a~~~Le~~~~~--~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~ 227 (242)
+|+|++.++++||+.|++ +|+++||++++++||+.+.++| .++++++|++|+++| +++++++||+...+
T Consensus 168 iG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 168 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp EETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999 889999999999999 58899999987654
No 9
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=6.2e-49 Score=340.25 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=208.2
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|+.+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 85 (261)
T 1iru_C 6 DSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANV 85 (261)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHH
T ss_pred CCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHH
Confidence 45567899996 679999999999999999999999999999999887777777999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH--hhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMY--NRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT 158 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~--~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai 158 (242)
|+++++. .++.|+++++++++++.+++++++.++ ++++++|||+|++||+|+| +++|+||++||+|++.+++++|+
T Consensus 86 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 164 (261)
T 1iru_C 86 LTNELRL-IAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCI 164 (261)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEE
T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEe
Confidence 9999998 588999999999999999999999984 4566789999999999999 58999999999999999999999
Q ss_pred ccchHhhHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----eEEeCCcccccccccc
Q 026175 159 GFGNHLARPILRDEWHE-NLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----TTISQPYALKTFWGFT 229 (242)
Q Consensus 159 G~g~~~a~~~Le~~~~~-~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~~~ 229 (242)
|+|+.+++++|++.|++ +||++||++++++||..+.++|..++++++|++|+++| +++++++||+..+.-.
T Consensus 165 Gsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 165 GNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp STTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999987 6899999999976533
No 10
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=3.7e-48 Score=326.85 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=189.5
Q ss_pred ccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 23 PYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 23 a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++++++|..+|++.+.+++|. .++.|++++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~ 82 (217)
T 1yar_H 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA-ELELYRLQRRVNM 82 (217)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCC
T ss_pred CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence 567999999999999999999999998899999999999999999999999999999999999998 4889999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHH
Q 026175 103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDG 182 (242)
Q Consensus 103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea 182 (242)
+++.+++++++.+|.+| +|||+|++||+|+| ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus 83 ~v~~la~~l~~~~~~~r--~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 159 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK--YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEG 159 (217)
T ss_dssp CHHHHHHHHHHHHHHTT--TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred CHHHHHHHHHHHHHhcC--CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence 99999999999999876 78999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCeEEeCCcccccccc
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAKITE-EGTTISQPYALKTFWG 227 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~g~~~~~~~ei~~~~~ 227 (242)
++++++||+.+.++|..++++++|++|++ +|++.++++||+..++
T Consensus 160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~ 205 (217)
T 1yar_H 160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIR 205 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999988765
No 11
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.7e-48 Score=332.14 Aligned_cols=216 Identities=16% Similarity=0.097 Sum_probs=200.9
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+.+ +. ++.+||++|++|++++++|..+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~ 82 (233)
T 1ryp_F 6 DGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKKIIKCDEHMGLSLAGLAPDARV 82 (233)
T ss_dssp SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCcEEEEcCCEEEEEEechHHHHH
Confidence 34567899986 68999999999999999999999999999999865 33 58899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
+.++++. .++.|+++++++++++.+++++++.+ |+++.+.|||+|++||||+|+++|+||++||+|++.+++++|+|
T Consensus 83 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG 161 (233)
T 1ryp_F 83 LSNYLRQ-QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIG 161 (233)
T ss_dssp HHHHHHH-HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEES
T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEEC
Confidence 9999998 58899999999999999999999998 77777789999999999999989999999999999999999999
Q ss_pred cchHhhHHHHhhhcCC--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCC-CeEEeCCcccccc
Q 026175 160 FGNHLARPILRDEWHE--NL--SYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEE-GTTISQPYALKTF 225 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~--~~--s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~-g~~~~~~~ei~~~ 225 (242)
+|++.++++||+.|++ +| |++||+++++++|+.+. +| ..++++++|++|+++ |++.++++||+.+
T Consensus 162 ~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~ 232 (233)
T 1ryp_F 162 ARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY 232 (233)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred CCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999998 99 99999999999999998 77 578999999999999 7999999999875
No 12
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.8e-49 Score=340.07 Aligned_cols=221 Identities=17% Similarity=0.243 Sum_probs=203.9
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+|||+|++|++++++|+.+|++.
T Consensus 13 d~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~-~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~ 91 (264)
T 3h4p_A 13 DRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITS-KLVKIRSIEKIFQIDDHVAAATSGLVADARV 91 (264)
T ss_dssp ---CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCS-TTBCTTTCCCEEEEETTEEEEEEECSHHHHH
T ss_pred CCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccC-CccccCccccEEEecCcEEEEeccchHHHHH
Confidence 33456799995 5899999999999999999999999999999995 5788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
|++++|. .++.|+++++++++++.+|++|++.+ |++++++|||+|++||||+|+++|+||++||+|++.+++++|+|
T Consensus 92 l~~~~r~-~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiG 170 (264)
T 3h4p_A 92 LIDRARL-EAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIG 170 (264)
T ss_dssp HHTTHHH-HHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEES
T ss_pred HHHHHHH-HHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEEC
Confidence 9999998 48899999999999999999999987 66777899999999999999999999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CeEEeCCcccccccccc
Q 026175 160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--GTTISQPYALKTFWGFT 229 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g~~~~~~~ei~~~~~~~ 229 (242)
+|+.+++++|++.|+++||++||++++++||..+.++ .++++++|++|+++ +++.++++||+..++-.
T Consensus 171 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 171 SGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV 240 (264)
T ss_dssp TTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred CCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999976 78999999999986 48899999999877544
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.1e-48 Score=334.87 Aligned_cols=220 Identities=13% Similarity=0.194 Sum_probs=205.3
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++++++|..+|++.
T Consensus 9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 87 (241)
T 1iru_E 9 DRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKT 87 (241)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHH
Confidence 45567899995 68999999999999999999999999999999977665 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCC-----CCCcceEEEEEEEECCcEEEEEECCCCceeeeC
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNK-----FDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS 154 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~-----~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~ 154 (242)
+.++++. .++.|+++++++++++.+++++++.+ |+++.+ .|||+|++||+|+|+++|+||.+||+|++.+++
T Consensus 88 l~~~~~~-~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~ 166 (241)
T 1iru_E 88 LIDKARV-ETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCD 166 (241)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecc
Confidence 9999998 48899999999999999999999988 777766 799999999999998899999999999999999
Q ss_pred eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175 155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG 227 (242)
Q Consensus 155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~ 227 (242)
++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++| +++++++||+..++
T Consensus 167 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~ 239 (241)
T 1iru_E 167 ARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIK 239 (241)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHT
T ss_pred eEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 7789999999999998 78999999987653
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.2e-48 Score=334.90 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=202.7
Q ss_pred ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++++++|..+|++.+.
T Consensus 3 ~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~ 81 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMI 81 (242)
T ss_dssp CTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHH
T ss_pred CCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHH
Confidence 356788886 68999999999999999999999999999999977655 88999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCC------CCCcceEEEEEEEE-CCcEEEEEECCCCceeeeC
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNK------FDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDS 154 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~------~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~ 154 (242)
++++. .++.|+++++++++++.+++++++.+ |+++++ .|||+|++||+|+| +++|+||++||+|++.+++
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 82 EHART-AAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHH-HHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 99998 48899999999999999999999977 445655 89999999999999 7899999999999999999
Q ss_pred eEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175 155 HVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG 227 (242)
Q Consensus 155 ~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~ 227 (242)
++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++| +++++++||+..++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~ 233 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIK 233 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 6789999999999998 68999999988664
No 15
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.1e-47 Score=318.67 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=189.7
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI-EANLYEIRRERKPTVRAI 79 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence 6899999999999999999998899999999999999999999999999999999999998 588999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|.+| +|||+|++||+|+|+++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||++||++++
T Consensus 80 a~~l~~~~~~~r--~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la 157 (202)
T 1j2q_H 80 ATLTSNLLNSYR--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA 157 (202)
T ss_dssp HHHHHHHHHHTT--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhC--CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHH
Confidence 999999999876 789999999999998899999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccc
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
++||+.+.++|..++++++|++|+++|++.++++||+...+
T Consensus 158 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~ 198 (202)
T 1j2q_H 158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILA 198 (202)
T ss_dssp HHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGG
T ss_pred HHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHH
Confidence 99999999999999999999999999999999999987654
No 16
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=3.4e-47 Score=324.35 Aligned_cols=203 Identities=21% Similarity=0.231 Sum_probs=193.7
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
||+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS-KMELHALSTGREPRVATV 79 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHCSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHH-HHHhhHHhcCCCCCHHHH
Confidence 6999999999999999999998888888999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
++++++.+|.++ +||++++||||+|+++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+++++
T Consensus 80 a~~l~~~l~~~~---~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (234)
T 3unf_H 80 TRILRQTLFRYQ---GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV 156 (234)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHH
Confidence 999999988653 69999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccccCC
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNP 234 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~~~~ 234 (242)
+||+.+..+|..++++++|++|+++|++.+++++++..|.+++..+.
T Consensus 157 ~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~~~~~~~~ 203 (234)
T 3unf_H 157 EAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGRYR 203 (234)
T ss_dssp HHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCCCCCCCCC
T ss_pred HHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceeccccccccccccc
Confidence 99999999999999999999999999999999999999999865543
No 17
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.3e-48 Score=334.34 Aligned_cols=221 Identities=14% Similarity=0.200 Sum_probs=205.1
Q ss_pred hhhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHH
Q 026175 4 IQAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQ 80 (242)
Q Consensus 4 ~~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 80 (242)
-|-...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|++|++++++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 355667899996 56999999999999999999999999999999965 77888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEE
Q 026175 81 ELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVA 157 (242)
Q Consensus 81 ~l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~a 157 (242)
.+.++++. .++.|+++++++++++.+++++++.+ |++++++|||+|++||+|+| +++|+||++||+|++.+++++|
T Consensus 82 ~l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 160 (248)
T 1iru_D 82 IVINRARV-ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANA 160 (248)
T ss_dssp HHHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEE
Confidence 99999998 58899999999999999999999998 66677789999999999999 8899999999999999999999
Q ss_pred EccchHhhHHHHhhhcCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175 158 TGFGNHLARPILRDEWHENL--SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT 229 (242)
Q Consensus 158 iG~g~~~a~~~Le~~~~~~~--s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~ 229 (242)
+|+|++.++++||+.|+++| |++||++++++||..+.+ .++++++|++|+++| +++++++||+..++..
T Consensus 161 iG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~ 232 (248)
T 1iru_D 161 IGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232 (248)
T ss_dssp ESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTT
T ss_pred ECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999875 568899999999998 9999999999876543
No 18
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=6e-48 Score=330.34 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=200.8
Q ss_pred ccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHH
Q 026175 7 KQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELL 83 (242)
Q Consensus 7 ~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 83 (242)
...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+.+.++..++.+||++|++|++++++|..+|++.+.
T Consensus 5 ~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~ 84 (241)
T 1ryp_D 5 ALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84 (241)
T ss_dssp CCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHH
Confidence 456788885 56999999999999999999999999999999977666556999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHh--hcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEc
Q 026175 84 RNLDELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 84 ~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~~~--~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
++++. .++.|+++++++++++.+|+++++.+|. +++++|||+|++||+|+|+ ++|+||++||+|++.+++++|+|
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG 163 (241)
T 1ryp_D 85 EKARV-EAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIG 163 (241)
T ss_dssp HHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEES
T ss_pred HHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEEC
Confidence 99998 4889999999999999999999999865 5567899999999999997 89999999999999999999999
Q ss_pred cchHhhHHHHhhhc---CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccc
Q 026175 160 FGNHLARPILRDEW---HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWG 227 (242)
Q Consensus 160 ~g~~~a~~~Le~~~---~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~ 227 (242)
+|+++++++||+.| +++||++||++++++||..+.+ .++++++|++|+++| ++.++++||+..++
T Consensus 164 ~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~ 232 (241)
T 1ryp_D 164 RNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVT 232 (241)
T ss_dssp TTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHH
Confidence 99999999999999 9999999999999999999984 778999999999996 99999999988654
No 19
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.8e-48 Score=334.53 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=204.2
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+.+ +. ++.+||++|++|++++++|+.+|++.
T Consensus 7 d~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g-l~--~~~~KI~~i~~~i~~~~aG~~aD~~~ 83 (263)
T 1iru_F 7 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSE-LA--AHQKKILHVDNHIGISIAGLTADARL 83 (263)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSST-TB--CCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccc-cc--cchhcEEEEcCCEEEEEeCCHHHHHH
Confidence 34456788885 68999999999999999999999999999999865 33 58899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
|.++++. .++.|+++++++++++.+++++++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|
T Consensus 84 l~~~~~~-~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG 162 (263)
T 1iru_F 84 LCNFMRQ-ECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIG 162 (263)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEES
T ss_pred HHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcC
Confidence 9999998 58899999999999999999999998 46667789999999999999989999999999999999999999
Q ss_pred cchHhhHHHHhhhcCC--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCC-CeEEeCCcccccccccc
Q 026175 160 FGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLYRD-RSAVNKLQIAKITEE-GTTISQPYALKTFWGFT 229 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~--~~s~eeai~l~~~~l~~~~~~d-~~s~~~i~v~ii~k~-g~~~~~~~ei~~~~~~~ 229 (242)
+|++.++++||+.|++ +||++||++++++||+.+.++| ..++.+++|++|+++ ++++++++||+.+++-.
T Consensus 163 sgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 163 ARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTC
T ss_pred cccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999999 588999999999999 79999999999876543
No 20
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.7e-48 Score=334.19 Aligned_cols=223 Identities=16% Similarity=0.168 Sum_probs=205.8
Q ss_pred hhccCCCCCCCC---CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPNDP---IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+|+ |||+++|+++|+|+|||+++||||||+|+|.+.+.++ .++.+|||+|++|++++++|..+|++.
T Consensus 8 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~ 86 (254)
T 1iru_G 8 DLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARS 86 (254)
T ss_dssp TSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHH
Confidence 345678999964 6999999999999999999999999999999976665 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEE
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVAT 158 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~ai 158 (242)
|.++++. .++.|+++++++++++.+++++++.+ |++++++|||+|++||||+| +++|+||++||+|++.+++++|+
T Consensus 87 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 165 (254)
T 1iru_G 87 LADIARE-EASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAI 165 (254)
T ss_dssp HHHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEE
T ss_pred HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEe
Confidence 9999998 58899999999999999999999998 55677789999999999999 88999999999999999999999
Q ss_pred ccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--C-eEEeCCcccccccccc
Q 026175 159 GFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEE--G-TTISQPYALKTFWGFT 229 (242)
Q Consensus 159 G~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~--g-~~~~~~~ei~~~~~~~ 229 (242)
|+|+++++++||+.|+++|+++||+++++++|+.+.+++..++.+++|++|+++ | ++++++++|+..++..
T Consensus 166 Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~ 239 (254)
T 1iru_G 166 GKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA 239 (254)
T ss_dssp STTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877767889999999987 6 9999999999877643
No 21
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.6e-48 Score=331.51 Aligned_cols=219 Identities=18% Similarity=0.263 Sum_probs=204.6
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| ++||+++|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.
T Consensus 9 d~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~-~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 87 (246)
T 1j2p_A 9 DRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGS-KLLEKDTIEKIYKIDEHICAATSGLVADARV 87 (246)
T ss_dssp SSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSC-TTBCGGGCCSEEECSSSEEEEEEECHHHHHH
T ss_pred CCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCc-cccccCccCcEEEECCCEEEEEeEccHHHHH
Confidence 55567899996 6799999999999999999999999999999985 5667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEc
Q 026175 82 LLRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATG 159 (242)
Q Consensus 82 l~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG 159 (242)
+.++++. .++.|++.++++++++.+++++++.+ |++++++|||+|++||+|+| ++|+||++||+|++.+++++|+|
T Consensus 88 l~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiG 165 (246)
T 1j2p_A 88 LIDRARI-EAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIG 165 (246)
T ss_dssp HHHHHHH-HHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEES
T ss_pred HHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEEC
Confidence 9999998 48899999999999999999999998 77777789999999999999 99999999999999999999999
Q ss_pred cchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc-C-CCeEEeCCcccccccc
Q 026175 160 FGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT-E-EGTTISQPYALKTFWG 227 (242)
Q Consensus 160 ~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~-k-~g~~~~~~~ei~~~~~ 227 (242)
+|+++++++||+.|+++||++||++++++||..+.++ ..++++++|++|+ + ++++.++++||+..++
T Consensus 166 sgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~ 234 (246)
T 1j2p_A 166 MGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVE 234 (246)
T ss_dssp TTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999987 7889999999999 6 4799999999987654
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-47 Score=324.10 Aligned_cols=202 Identities=22% Similarity=0.317 Sum_probs=192.0
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|+.+|++.+.+++|. .++.|+++++++++++.
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~ 79 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIA-EAKLYKMRTGRNIPPLA 79 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHH-HHHHHHHHTSSCCCHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHH
Confidence 79999999999999999999998889999999999999999999999999999999999998 58899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVK 184 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~ 184 (242)
+++++++.+|.+| +|||+|++||||+|+ ++|+||++||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus 80 la~~l~~~~~~~~--~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~ 157 (219)
T 3h4p_a 80 CATLLSNILHSSR--MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK 157 (219)
T ss_dssp HHHHHHHHHHHTT--TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999998875 689999999999997 899999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccccc
Q 026175 185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAF 231 (242)
Q Consensus 185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~~~ 231 (242)
++++||..+.++|..++++++|++|+++|++.++++||+.+.+-.+.
T Consensus 158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~ 204 (219)
T 3h4p_a 158 LALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKA 204 (219)
T ss_dssp HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999987765543
No 23
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.2e-47 Score=329.13 Aligned_cols=217 Identities=19% Similarity=0.153 Sum_probs=200.3
Q ss_pred hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175 6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82 (242)
Q Consensus 6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 82 (242)
-...+|.|+| ++||+++|+.+|+|+|||+++||||||+|+|.+.+.++ .++.+||++|++|++++++|..+|++.+
T Consensus 6 ~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l 84 (244)
T 1ryp_G 6 LSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHL 84 (244)
T ss_dssp SSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHH
T ss_pred CCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcc-ccccCceEEecCCEEEEEcccHHHHHHH
Confidence 3456788885 57999999999999999999999999999999976655 4556999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175 83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF 160 (242)
Q Consensus 83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~ 160 (242)
.++++. .++.|+++++++++++.+++++++.+ |++++++|||+|++||+|+|+++|+||++||+|++.+++++|+|+
T Consensus 85 ~~~~~~-~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~ 163 (244)
T 1ryp_G 85 VNRGRE-EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK 163 (244)
T ss_dssp HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECC
Confidence 999998 58899999999999999999999998 667777899999999999999899999999999999999999999
Q ss_pred chHhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC---CCeEEeCCccccc
Q 026175 161 GNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE---EGTTISQPYALKT 224 (242)
Q Consensus 161 g~~~a~~~Le~~---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k---~g~~~~~~~ei~~ 224 (242)
|+++++++||+. |+++||++||++++++||+.+.++|..++.+++|++|++ +|++.+.|+++-.
T Consensus 164 gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~ 233 (244)
T 1ryp_G 164 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQ 233 (244)
T ss_dssp THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHH
T ss_pred ChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHH
Confidence 999999999997 999999999999999999999999998999999999998 7898888877644
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.6e-47 Score=333.70 Aligned_cols=214 Identities=17% Similarity=0.245 Sum_probs=197.0
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
...++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++
T Consensus 68 ~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~-~~~~y~~~~~ 146 (287)
T 3nzj_K 68 CKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGS-QCRLHELREK 146 (287)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred hhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 456789999999999999999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCC
Q 026175 100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLS 178 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s 178 (242)
++++++.+++++++.+|.+|. +||++++||||+| +++|+||++||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus 147 ~~isv~~la~~ls~~l~~~r~--~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms 224 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKG--AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLS 224 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT--SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhhcC--CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCC
Confidence 999999999999999988763 5999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccc-ccccccccCCcc
Q 026175 179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKT-FWGFTAFQNPTA 236 (242)
Q Consensus 179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~-~~~~~~~~~~~~ 236 (242)
++||++++++||..+.+||..++++++|++|+++|+++++++||+. .|++++-+.+..
T Consensus 225 ~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~~~~~ 283 (287)
T 3nzj_K 225 VEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFN 283 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999988 899998766554
No 25
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.6e-46 Score=324.82 Aligned_cols=206 Identities=15% Similarity=0.237 Sum_probs=190.7
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
..+|+++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|++.++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~-~~~~~~~~~~ 100 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS-NIELHSLYTS 100 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHH-HHHHhHHhhC
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCH
Q 026175 100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSY 179 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ 179 (242)
++++++.+++++++.+|.++ +||++++||||+|+++|+||++||+|++.+++++|+|+|++.++++||+.|+++||+
T Consensus 101 ~~~~v~~~a~~l~~~l~~~~---~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 177 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTK 177 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCH
T ss_pred CCCCHHHHHHHHHHHHHHhc---CcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCH
Confidence 99999999999999988653 699999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175 180 EDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT 229 (242)
Q Consensus 180 eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~ 229 (242)
|||++++++||..+.++|..++++++|++|+++| ++.+.++.++..|.+.
T Consensus 178 eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~~~~ 228 (261)
T 3nzj_H 178 EEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEK 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCccccc
Confidence 9999999999999999999999999999999999 8999999999999875
No 26
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.4e-46 Score=315.86 Aligned_cols=206 Identities=17% Similarity=0.235 Sum_probs=195.8
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS-QCRLHELREKERISVAAA 79 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHH
Confidence 6899999999999999999998899999999999999999999999999999999999998 488899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEE-CCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D-~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|.++. .||+|++||||+| +++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 80 a~~l~~~~~~~~~--~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la 157 (212)
T 1ryp_L 80 SKILSNLVYQYKG--AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG 157 (212)
T ss_dssp HHHHHHHHHHTTT--SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC--CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 9999999987763 4999999999999 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccc-cccccccCCcc
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTF-WGFTAFQNPTA 236 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~-~~~~~~~~~~~ 236 (242)
++||+.+.+||..++++++|++|+++|++.++++||+.. |++.+++.+..
T Consensus 158 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~~~~~~~ 208 (212)
T 1ryp_L 158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFN 208 (212)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999996 99988877654
No 27
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.1e-47 Score=332.57 Aligned_cols=215 Identities=20% Similarity=0.154 Sum_probs=195.7
Q ss_pred hccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHH
Q 026175 6 AKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQEL 82 (242)
Q Consensus 6 ~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 82 (242)
-...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+.+.+ ..++.+|||+|++||+|+++|+.+|++.|
T Consensus 10 ~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~-~~~~~~KI~~I~d~i~~~~aG~~aD~~~l 88 (288)
T 3nzj_F 10 LSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL-VPQKNVKIQVVDRHIGCVYSGLIPDGRHL 88 (288)
T ss_dssp SSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTB-CTTCSCCCEEETTTEEEEEEECHHHHHHH
T ss_pred CCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCc-cccccceEEEEcCCEEEEecCcHHHHHHH
Confidence 3456799996 4799999999999999999999999999999997655 45678999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEcc
Q 026175 83 LRNLDELILYDNMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGF 160 (242)
Q Consensus 83 ~~~lr~~~~~~~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~ 160 (242)
++++|. .++.|+++++++++++.+|++|++.+ |++++++|||+|++||||+|+++|+||++||+|++.+++++|+|+
T Consensus 89 ~~~lr~-e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGs 167 (288)
T 3nzj_F 89 VNRGRE-EAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK 167 (288)
T ss_dssp HHHHHH-HHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHH-HHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcC
Confidence 999998 48899999999999999999999998 566667899999999999999899999999999999999999999
Q ss_pred chHhhHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-C--CeEEeCCccc
Q 026175 161 GNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITE-E--GTTISQPYAL 222 (242)
Q Consensus 161 g~~~a~~~Le~~---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k-~--g~~~~~~~ei 222 (242)
|++.++++||+. |+++|+++||++++++||..+.+++..++.+++|++|++ + |.+.+-|.++
T Consensus 168 gs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~ 235 (288)
T 3nzj_F 168 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 235 (288)
T ss_dssp THHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHH
T ss_pred cHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHH
Confidence 999999999999 999999999999999999999999888888999999999 3 4554444443
No 28
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.3e-46 Score=312.84 Aligned_cols=198 Identities=17% Similarity=0.208 Sum_probs=189.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR-QCRIYELRNKERISVAAA 79 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHH
Confidence 6899999999999999999998899999999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
++++++.+|.+|. +|++|++||+|+|+++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++++
T Consensus 80 a~~l~~~~~~~r~--~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~ 157 (204)
T 1iru_L 80 SKLLANMVYQYKG--MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR 157 (204)
T ss_dssp HHHHHHHHHTTTT--SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 9999999988763 59999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCccccccccc
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGF 228 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~ 228 (242)
+||+.+.+||..++++++|++|+++|++.++++||+.+++-
T Consensus 158 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~ 198 (204)
T 1iru_L 158 RAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEK 198 (204)
T ss_dssp HHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHH
Confidence 99999999999899999999999999999999999887653
No 29
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.4e-46 Score=314.21 Aligned_cols=198 Identities=15% Similarity=0.239 Sum_probs=190.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~~ 79 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS-NIELHSLYTSREPRVVSA 79 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHHH
Confidence 6899999999999999999998888889999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
++++++.+|.++ |||++++||||+|+++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++++
T Consensus 80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (222)
T 1ryp_I 80 LQMLKQHLFKYQ---GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156 (222)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhcC---CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 999999988764 79999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCC-eEEeCCcccccccccc
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEG-TTISQPYALKTFWGFT 229 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g-~~~~~~~ei~~~~~~~ 229 (242)
+||+.+.++|..++++++|++|+++| ++.+.+.+++..|.++
T Consensus 157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~~~ 199 (222)
T 1ryp_I 157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVREEK 199 (222)
T ss_dssp HHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCCCC
T ss_pred HHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCccccc
Confidence 99999999999899999999999999 9999999999999995
No 30
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=7.2e-47 Score=325.36 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=201.0
Q ss_pred hhccCCCCCCC---CCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHH
Q 026175 5 QAKQGLVGPND---PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQE 81 (242)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 81 (242)
|-...+|.|+| +|||+++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|++++++|..+|++.
T Consensus 6 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 84 (250)
T 1ryp_B 6 SFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84 (250)
T ss_dssp CSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHH
T ss_pred cCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHH
Confidence 45567899995 679999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHH--HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEE
Q 026175 82 LLRNLDELILYD-NMWDDGNSLGPKELHSYLTRVM--YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVA 157 (242)
Q Consensus 82 l~~~lr~~~~~~-~~~~~g~~i~~~~la~~l~~~~--~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~a 157 (242)
+.++++.. ++. |++.++.+++++.+++.+++.+ ++++.++|||+|++||+|+|+ ++|+||++||+|++.+++++|
T Consensus 85 l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 163 (250)
T 1ryp_B 85 LVDKSRKV-AHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATA 163 (250)
T ss_dssp HHHHHHHH-HHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeE
Confidence 99999984 777 8888999999999999999887 556556899999999999995 799999999999999999999
Q ss_pred EccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC----------------eEEeCCcc
Q 026175 158 TGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG----------------TTISQPYA 221 (242)
Q Consensus 158 iG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g----------------~~~~~~~e 221 (242)
+|+|+++++++||+.|+++||++||++++++||+.+.+++ .++++++|++|++++ ++.++++|
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~e 242 (250)
T 1ryp_B 164 IGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQE 242 (250)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHH
T ss_pred ecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHH
Confidence 9999999999999999999999999999999999998875 579999999999862 68889988
Q ss_pred ccccc
Q 026175 222 LKTFW 226 (242)
Q Consensus 222 i~~~~ 226 (242)
|+...
T Consensus 243 i~~~l 247 (250)
T 1ryp_B 243 INDRL 247 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 31
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.3e-45 Score=306.74 Aligned_cols=194 Identities=15% Similarity=0.311 Sum_probs=182.9
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~ 79 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA-NIQLYSIREDYELSPQA 79 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHH
Confidence 68999999999999999999998888888999999999999999999999999999999998 58899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK 184 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~ 184 (242)
+++++++.+|..+...+||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus 80 la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 80 VSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 999999998775322249999999999994 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcc
Q 026175 185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYA 221 (242)
Q Consensus 185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~e 221 (242)
++++||..+.++|..++++++|++|+++|++.+++.+
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~ 196 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQ 196 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCS
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecccc
Confidence 9999999999999999999999999999999988754
No 32
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.7e-45 Score=308.23 Aligned_cols=194 Identities=22% Similarity=0.351 Sum_probs=183.2
Q ss_pred cccc-ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 21 QLPY-VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 21 ~~a~-~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
++|+ .+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~ 80 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEA-RLKMYKHSNN 80 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHH-HHHHHHHhcC
Confidence 4554 5899999999999999999999998888888999999999999999999999999999999998 4889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhh------
Q 026175 100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE------ 172 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~------ 172 (242)
++++++.+|++|++.+|++| +|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.
T Consensus 81 ~~~~v~~la~~l~~~~y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~ 158 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNM 158 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSC
T ss_pred CCCCHHHHHHHHHHHHHhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccc
Confidence 99999999999999999988 799999999999995 569999999999999999999999999999999999
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 173 ---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 173 ---~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
|+++||++||++++++||..+.++|..++++++|++|+++|++..
T Consensus 159 ~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 159 QNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence 888999999999999999999999999999999999999997643
No 33
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.1e-45 Score=304.83 Aligned_cols=197 Identities=18% Similarity=0.263 Sum_probs=187.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY-QLGFHSIELNEPPLVHTA 79 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHTSCCCHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence 6899999999999999999998889999999999999999999999999999999999998 588999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLL 186 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~ 186 (242)
++++++.+|.++ +||++++|++|+|+ ++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||++++
T Consensus 80 a~~l~~~~~~~~---~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~ 156 (205)
T 1iru_H 80 ASLFKEMCYRYR---EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT 156 (205)
T ss_dssp HHHHHHHHHHTT---TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcC---cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999998776 39999999999996 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCe--EEeCCccccccccc
Q 026175 187 EKCMRVLLYRDRSAVNKLQIAKITEEGT--TISQPYALKTFWGF 228 (242)
Q Consensus 187 ~~~l~~~~~~d~~s~~~i~v~ii~k~g~--~~~~~~ei~~~~~~ 228 (242)
++||+.+.++|..++++++|++|+++|. +.++++||+.+++-
T Consensus 157 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 9999999999999999999999999985 57999999998864
No 34
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.9e-45 Score=312.53 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=192.3
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.++++. .++.|+++++++++++.+
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS-NLELHSLSTGRLPRVVTA 79 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHHCSCCCHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHH-HHHHHHHhcCCCCCHHHH
Confidence 6899999999999999999998888888899999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLE 187 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~ 187 (242)
++++++.+|.++ +||++++||||+|+++|+||++||+|++.+++++|+|+|++.++++||+.|+++||++||+++++
T Consensus 80 a~~l~~~l~~~~---~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (234)
T 1iru_I 80 NRMLKQMLFRYR---GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS 156 (234)
T ss_dssp HHHHHHHHHHTT---TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred HHHHHHHHHhcC---CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 999999988765 69999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCcccccccccc--cccCC
Q 026175 188 KCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFT--AFQNP 234 (242)
Q Consensus 188 ~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ei~~~~~~~--~~~~~ 234 (242)
+||+.+.++|..++++++|++|+++|++.+.+++++..|.+. .|+.|
T Consensus 157 ~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~ 205 (234)
T 1iru_I 157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCE 205 (234)
T ss_dssp HHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCCCCCSCCCCC
T ss_pred HHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCccccccccCcccC
Confidence 999999999998999999999999999999999999999994 44444
No 35
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=3.8e-45 Score=305.68 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=183.3
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
.++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.+++|. .++.|+++++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~ 80 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQY-HLELYTSQYG 80 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 578999999999999999999999999998889999999999999999999999999999999999998 5889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCC
Q 026175 100 NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLS 178 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s 178 (242)
+ ++++.+++++++.+|.+|. + |++++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||
T Consensus 81 ~-~~v~~la~~l~~~~~~~~~--~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 81 T-PSTETAASVFKELCYENKD--N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp S-CCHHHHHHHHHHHHHHTTT--T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred C-CCHHHHHHHHHHHHHhhhc--C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 9 9999999999999988764 2 999999999995 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 179 YEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 179 ~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
++||++++++||+.+.++|..++++++|++|+++|++..
T Consensus 157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~ 195 (205)
T 1ryp_H 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence 999999999999999999999999999999999997654
No 36
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=7.4e-45 Score=307.65 Aligned_cols=194 Identities=18% Similarity=0.262 Sum_probs=183.0
Q ss_pred ccc-cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 21 QLP-YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 21 ~~a-~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
++| +.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.|.++++. .++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~ 80 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKN-SVKWYHFDHN 80 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHHHHcC
Confidence 344 45899999999999999999999998888889999999999999999999999999999999998 5889999999
Q ss_pred -CCCCHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhh-----
Q 026175 100 -NSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE----- 172 (242)
Q Consensus 100 -~~i~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~----- 172 (242)
++++++.+|+++++.+|++| ++||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~ 158 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKN 158 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTT
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccc
Confidence 99999999999999999987 689999999999994 569999999999999999999999999999999998
Q ss_pred ------------cCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEe
Q 026175 173 ------------WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTIS 217 (242)
Q Consensus 173 ------------~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~ 217 (242)
|+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus 159 ~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~ 215 (222)
T 1ryp_M 159 QYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE 215 (222)
T ss_dssp CBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence 789999999999999999999999999999999999999997643
No 37
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=8.6e-46 Score=318.05 Aligned_cols=204 Identities=17% Similarity=0.211 Sum_probs=182.5
Q ss_pred CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN 94 (242)
Q Consensus 15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~ 94 (242)
.++||+++|+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|.+.++.. ++.|
T Consensus 15 ~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~-~~l~ 85 (248)
T 3mi0_A 15 ERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQF-ADTR 85 (248)
T ss_dssp HHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHH-HHHH
T ss_pred cchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHH-HHHH
Confidence 46799999999999999999999999999999 24889999999999999999999999999999874 7888
Q ss_pred hhhcC-CCCCHHHHHHHHHHHH---HhhcCCCCCcceEEEEEEEEC----CcEEEEEECCCCceee-eCeEEEccchHhh
Q 026175 95 MWDDG-NSLGPKELHSYLTRVM---YNRRNKFDPLWNSLVLGGVKN----GQKYLGMVSMIGVNFE-DSHVATGFGNHLA 165 (242)
Q Consensus 95 ~~~~g-~~i~~~~la~~l~~~~---~~~r~~~rP~~vs~lvaG~D~----~~p~Ly~idp~G~~~~-~~~~aiG~g~~~a 165 (242)
+++++ .+++++.|++++++.+ |++ ++|||+|++||+|||+ ++|+||++||+|++.+ ++++|+|+|++.+
T Consensus 86 ~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a 163 (248)
T 3mi0_A 86 GYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPI 163 (248)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHH
Confidence 89999 8999999999999554 666 3799999999999997 8999999999999994 9999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHH-------hcccCCCCcEEEEEEcCCC----eEEeCCccccccccccc
Q 026175 166 RPILRDEWHENLSYEDGVKLLEKCMRVLL-------YRDRSAVNKLQIAKITEEG----TTISQPYALKTFWGFTA 230 (242)
Q Consensus 166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~-------~~d~~s~~~i~v~ii~k~g----~~~~~~~ei~~~~~~~~ 230 (242)
+++||++|+++|+++||++++++||+.+. ++ ..++++++|++|+++| +++++++||+.+.+-.+
T Consensus 164 ~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 164 ANALKESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 99999999999999999999999999998 44 4778899999999997 89999999999877543
No 38
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1e-44 Score=302.16 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=181.0
Q ss_pred CceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 27 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 27 g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|+++++++++++.
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~ 79 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK-NVQLYKMRNGYELSPTA 79 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHH-HHHHHHHHHSSCCCHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHH-HHHHHHHHcCCCCCHHH
Confidence 68999999999999999999998899999999999999999999999999999999999998 58899999999999999
Q ss_pred HHHHHHHHH-HhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHH
Q 026175 107 LHSYLTRVM-YNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVK 184 (242)
Q Consensus 107 la~~l~~~~-~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~ 184 (242)
+++++++.+ |..+. .|||+|++||+|+|+ ++|+||++||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus 80 ~a~~~~~~l~~~~~~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 158 (201)
T 1iru_K 80 AANFTRRNLADCLRS-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE 158 (201)
T ss_dssp HHHHHHHHHHHHHTS-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence 999999876 54443 379999999999996 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCCc
Q 026175 185 LLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPY 220 (242)
Q Consensus 185 l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~~ 220 (242)
++++||+.+.+||..++++++|++|+++|++.+++.
T Consensus 159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~ 194 (201)
T 1iru_K 159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194 (201)
T ss_dssp HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred HHHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence 999999999999999999999999999999887653
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.3e-44 Score=300.94 Aligned_cols=194 Identities=15% Similarity=0.229 Sum_probs=182.4
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
||+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++++++|..+|++.+.+++|. .++.|+++++++++++.+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~~ 79 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY-QLELHGLELEEPPLVLAA 79 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHH-HHHHHHHHTTSCCCHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHH-HHHHHHHHhCCCCCHHHH
Confidence 6999999999999999999998889999999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcceEEEEEEEEC-CcEEEEEECCCCceeeeC-eEEEccchHhhHHHHhhhcCCCCCHHHHHHH
Q 026175 108 HSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDS-HVATGFGNHLARPILRDEWHENLSYEDGVKL 185 (242)
Q Consensus 108 a~~l~~~~~~~r~~~rP~~vs~lvaG~D~-~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l 185 (242)
++++++.+|.+| |||+|++||||+|+ ++|+||+ |+|++.++. +.++|+|+++++++||+.|+++||++||+++
T Consensus 80 a~~l~~~l~~~~---~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l 154 (199)
T 3unf_N 80 ANVVKNISYKYR---EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF 154 (199)
T ss_dssp HHHHHHHHHHTT---TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHhcC---CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999998764 69999999999996 7999999 999976655 5567999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCC--eEEeCCcccccccc
Q 026175 186 LEKCMRVLLYRDRSAVNKLQIAKITEEG--TTISQPYALKTFWG 227 (242)
Q Consensus 186 ~~~~l~~~~~~d~~s~~~i~v~ii~k~g--~~~~~~~ei~~~~~ 227 (242)
+++||+.+.++|..++++++|++|+++| ++.++++||+.+|+
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 155 TTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 9999999999999999999999999999 56799999999986
No 40
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5e-45 Score=320.19 Aligned_cols=207 Identities=19% Similarity=0.184 Sum_probs=191.7
Q ss_pred CccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcC
Q 026175 20 TQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDG 99 (242)
Q Consensus 20 ~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g 99 (242)
+++|+.+|+|+|||+++||||||+|+|.+.|+++.+++.+|||+|++|++++++|..+|++.|+++++. +++.|+++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~-~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAV-ELEHYEKIEG 136 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHH-HHHHhhHhhC
Confidence 678899999999999999999999999998899999999999999999999999999999999999998 5889999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-CCCCcceEEEEEEEECC-c-----EEEEEECCCCceeee--CeEEEccchHhhHHHHh
Q 026175 100 NSLGPKELHSYLTRVMYNRRN-KFDPLWNSLVLGGVKNG-Q-----KYLGMVSMIGVNFED--SHVATGFGNHLARPILR 170 (242)
Q Consensus 100 ~~i~~~~la~~l~~~~~~~r~-~~rP~~vs~lvaG~D~~-~-----p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le 170 (242)
++++++.+++.|++.++.++. .+|||+|++||+|+|++ + |+||++||+|++.++ +++|+|+|+.+++++||
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 999999999999999865421 27999999999999964 6 999999999999998 89999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCcccccccc
Q 026175 171 DEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 171 ~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
+.|+++|+++||++++++||+.+.++|..+++. + +|++|+++|++.++++||+.+++
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~ 280 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR 280 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHH
Confidence 999999999999999999999999999887653 6 99999999999999999998664
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.2e-44 Score=300.02 Aligned_cols=189 Identities=20% Similarity=0.309 Sum_probs=178.6
Q ss_pred ccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCH
Q 026175 25 VTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGP 104 (242)
Q Consensus 25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~ 104 (242)
.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++. .++.|++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKF-RLNLYELKEGRQIKP 84 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHH-HHHHHHHHSSSCCCH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHH-HHHHHHhhcCCCCCH
Confidence 5899999999999999999999998888888899999999999999999999999999999998 488999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHHH
Q 026175 105 KELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYED 181 (242)
Q Consensus 105 ~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~ee 181 (242)
+.+|+++++.+|++|. .||+|++||+|+|+ ++|+||++||+|++.++ +++|+|+|+++++++||+.|+++||++|
T Consensus 85 ~~la~~l~~~~y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 85 YTLMSMVANLLYEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp HHHHHHHHHHHHTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHHHHHHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 9999999999999884 59999999999994 89999999999998665 6699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175 182 GVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI 216 (242)
Q Consensus 182 ai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~ 216 (242)
|++++++||+.+.++|..++.+++|++|+++|++.
T Consensus 163 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 197 (205)
T 1iru_J 163 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT 197 (205)
T ss_dssp HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred HHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence 99999999999999999999999999999999764
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=7.9e-44 Score=297.42 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=178.3
Q ss_pred cccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026175 24 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLG 103 (242)
Q Consensus 24 ~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~ 103 (242)
+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ |++++++|..+|++.+.++++. .++.|+++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRY-KTNLYKLKEERAIE 82 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCC
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHH-HHHHHhhccCCCCC
Confidence 458999999999999999999999988888888999999999 9999999999999999999998 48899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcceEEEEEEEEC--CcEEEEEECCCCceeee-CeEEEccchHhhHHHHhhhcCCCCCHH
Q 026175 104 PKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN--GQKYLGMVSMIGVNFED-SHVATGFGNHLARPILRDEWHENLSYE 180 (242)
Q Consensus 104 ~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~--~~p~Ly~idp~G~~~~~-~~~aiG~g~~~a~~~Le~~~~~~~s~e 180 (242)
++.+|+++++.+|++|. .||+|++||+|+|+ ++|+||++||+|++.++ +++|+|+|+++++++||+.|+++||++
T Consensus 83 v~~la~~l~~~~y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 83 PETFTQLVSSSLYERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp HHHHHHHHHHHHHTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 99999999999999984 49999999999995 88999999999998665 669999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEE
Q 026175 181 DGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTI 216 (242)
Q Consensus 181 eai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~ 216 (242)
||++++++||..+.++|..++++++|++|+++|+++
T Consensus 161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence 999999999999999999999999999999999764
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-44 Score=306.11 Aligned_cols=199 Identities=20% Similarity=0.203 Sum_probs=185.5
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKEL 107 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~l 107 (242)
+|+|||+++||||||+|+|.+.|+++.+++.+||++|+++++++++|..+|++.|.++++. .++.|+++++++++++.+
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~~~~~~~v~~l 79 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV-ELEHYEKIEGVPLTFDGK 79 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHHHHHHSSCCCHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHH-HHHHhHHHhCCCCCHHHH
Confidence 6899999999999999999998899999999999999999999999999999999999998 488999999999999999
Q ss_pred HHHHHHHHHhhcC-CCCCcceEEEEEEEECC-c-----EEEEEECCCCceeee--CeEEEccchHhhHHHHhhhcCCCCC
Q 026175 108 HSYLTRVMYNRRN-KFDPLWNSLVLGGVKNG-Q-----KYLGMVSMIGVNFED--SHVATGFGNHLARPILRDEWHENLS 178 (242)
Q Consensus 108 a~~l~~~~~~~r~-~~rP~~vs~lvaG~D~~-~-----p~Ly~idp~G~~~~~--~~~aiG~g~~~a~~~Le~~~~~~~s 178 (242)
++.|++.++..+. .+|||+|++||||+|++ + |+||++||+|++.++ +++|+|+|+.+++++||+.|+++||
T Consensus 80 a~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 9999999876421 27999999999999964 7 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCcccccccc
Q 026175 179 YEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWG 227 (242)
Q Consensus 179 ~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~ 227 (242)
++||++++++||..+.++|..+++. + +|++|+++|++.++++|++.+++
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~ 215 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELAR 215 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHH
Confidence 9999999999999999999887753 2 99999999999999999998665
No 44
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=7.8e-45 Score=314.21 Aligned_cols=202 Identities=17% Similarity=0.200 Sum_probs=184.0
Q ss_pred CCCccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHh
Q 026175 15 DPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDN 94 (242)
Q Consensus 15 ~~~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~ 94 (242)
.++||+++|+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|+++++. .++.|
T Consensus 15 ~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~-~~~~~ 85 (259)
T 1q5q_A 15 DRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIV-HADMR 85 (259)
T ss_dssp HHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHH-HHHHH
Confidence 36899999999999999999999999999999 2588999999999999999999999999999987 47888
Q ss_pred hhhcC-CCCCHHHHHHHHHHH---HHhhcCCCCCcceEEEEEEEE----CCcEEEEEECCCCcee-eeCeEEEccchHhh
Q 026175 95 MWDDG-NSLGPKELHSYLTRV---MYNRRNKFDPLWNSLVLGGVK----NGQKYLGMVSMIGVNF-EDSHVATGFGNHLA 165 (242)
Q Consensus 95 ~~~~g-~~i~~~~la~~l~~~---~~~~r~~~rP~~vs~lvaG~D----~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a 165 (242)
++.++ ++++++.+++++++. .|+.+ +|||+|++||||+| +++|+||++||+|++. +++++|+|+|++.+
T Consensus 86 ~~~~~~~~i~v~~la~~l~~~l~q~yt~~--~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a 163 (259)
T 1q5q_A 86 GYSYDRRDVTGRSLANAYAQTLGTIFTEQ--PKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPI 163 (259)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHHHHHHS--SSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHH
T ss_pred HHHcCCcCCCHHHHHHHHHHHHHHHhccC--CCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHH
Confidence 88877 599999999999995 37643 79999999999999 7899999999999999 78999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHH-----hcccCCCCcEEEEEEcCC----CeEEeCCccccccccc
Q 026175 166 RPILRDEWHENLSYEDGVKLLEKCMRVLL-----YRDRSAVNKLQIAKITEE----GTTISQPYALKTFWGF 228 (242)
Q Consensus 166 ~~~Le~~~~~~~s~eeai~l~~~~l~~~~-----~~d~~s~~~i~v~ii~k~----g~~~~~~~ei~~~~~~ 228 (242)
+++||+.|+++|+++||++++++||..+. ++|. ++.+++|++|+++ +++.++++||+....-
T Consensus 164 ~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 164 ATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA 234 (259)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence 99999999999999999999999999998 8887 8999999999998 6999999999887653
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.9e-44 Score=314.24 Aligned_cols=210 Identities=17% Similarity=0.154 Sum_probs=170.0
Q ss_pred CccCccccccCceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEecCceEEEecCChhHHHHHHHHHHHHHHHHhhh
Q 026175 17 IQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMW 96 (242)
Q Consensus 17 ~~~~~~a~~~g~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~ 96 (242)
++|++. +.+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|++|+++|..+|++.|.++++. +++.|++
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~-~~~~y~~ 125 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV-ELEHYEK 125 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHH-HHHHHHH
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHH-HHHHhhh
Confidence 468888 89999999999999999999999998888889999999999999999999999999999999998 5889999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhc-CCCCCcceEEEEEEEEC-Cc-----EEEEEECCCCcee--eeCeEEEccchHhhHH
Q 026175 97 DDGNSLGPKELHSYLTRVMYNRR-NKFDPLWNSLVLGGVKN-GQ-----KYLGMVSMIGVNF--EDSHVATGFGNHLARP 167 (242)
Q Consensus 97 ~~g~~i~~~~la~~l~~~~~~~r-~~~rP~~vs~lvaG~D~-~~-----p~Ly~idp~G~~~--~~~~~aiG~g~~~a~~ 167 (242)
.++.+++++.+++.+++.++.++ ..+|||+|++||||+|+ ++ |+||++||+|++. +++++|+|+|++++++
T Consensus 126 ~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~ 205 (291)
T 2jay_A 126 LEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKS 205 (291)
T ss_dssp HHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHH
Confidence 99999999999999999997653 23689999999999995 45 9999999999988 8999999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCeEEeCCccccccccc
Q 026175 168 ILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNK--L-----QIAKITEEGTTISQPYALKTFWGF 228 (242)
Q Consensus 168 ~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~--i-----~v~ii~k~g~~~~~~~ei~~~~~~ 228 (242)
+||+.|+++||++||++++++||+.+.++|..+++. + +|++|+++|++.++++||+..++-
T Consensus 206 ~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~ 273 (291)
T 2jay_A 206 SMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARA 273 (291)
T ss_dssp HHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHH
Confidence 999999999999999999999999999999887753 2 699999999999999999986553
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=7.9e-36 Score=244.67 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=149.8
Q ss_pred ccCceEEEEEeCCEEEEEEcCCcccCce-eeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026175 25 VTGTSVVALKYKDGILMAADMGGSYGST-IRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSL 102 (242)
Q Consensus 25 ~~g~t~vgi~~~dgVvlaad~r~t~~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i 102 (242)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|..+|++.|.++++. +++.|+ + .
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~y~---g--~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEA-KLEEYN---G--N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHH-HHHHTT---T--C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHH-HHHHhc---C--C
Confidence 6799999999999999999999998888 999999999999 999999999999999999999998 477765 3 2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceee--eCeEEEccchHhhHHHHhhhcCC---CC
Q 026175 103 GPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE--DSHVATGFGNHLARPILRDEWHE---NL 177 (242)
Q Consensus 103 ~~~~la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~--~~~~aiG~g~~~a~~~Le~~~~~---~~ 177 (242)
.++.++ .+++.+ +++.++|||++++||+ ++|+||++||+|++.+ ++++|+|+|+++++++||+.|++ +|
T Consensus 77 ~~~~~~-~l~~~~-~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~m 150 (180)
T 2z3b_A 77 LKRAAV-ELAKEW-RSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESM 150 (180)
T ss_dssp HHHHHH-HHHHHH-HHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHH-HHHHHH-HhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCC
Confidence 233333 344443 3444578999999999 3799999999999988 59999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175 178 SYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKIT 210 (242)
Q Consensus 178 s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~ 210 (242)
|.|| ++.+||+.+.+||..++++++|.+|+
T Consensus 151 t~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 151 SASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp CHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 9999 46799999999999999999999983
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-35 Score=240.40 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=148.4
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.+.+++|. +++.|+++ .++.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~~-----~~~~ 74 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA-KLREWGGN-----LTKA 74 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHHTTTC-----HHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHH-HHHHhccc-----HHHH
Confidence 6899999999999999999998899999999999999 999999999999999999999998 47776643 2666
Q ss_pred HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC--eEEEccchHhhHHHHhhhcC-CCCCHHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS--HVATGFGNHLARPILRDEWH-ENLSYEDGV 183 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~--~~aiG~g~~~a~~~Le~~~~-~~~s~eeai 183 (242)
++++.+ .+++++ .+|||++++|++ | +|+||++||+|++.+++ +.|+|+|+++++++||+.|+ ++||. +
T Consensus 75 ~~~l~~-~~~~~~-~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~ 145 (171)
T 1m4y_A 75 AVELAK-DWRTDR-VLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---R 145 (171)
T ss_dssp HHHHHH-HHHHCT-TGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---H
T ss_pred HHHHHH-HHHHhC-CCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---H
Confidence 666544 555543 367899999998 5 89999999999999987 99999999999999999999 99996 6
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEE
Q 026175 184 KLLEKCMRVLLYRDRSAVNKLQIAKI 209 (242)
Q Consensus 184 ~l~~~~l~~~~~~d~~s~~~i~v~ii 209 (242)
+++++||+.+.+||..++++++|.++
T Consensus 146 ~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 146 EIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 78999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.9e-35 Score=239.90 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=149.3
Q ss_pred ceEEEEEeCCEEEEEEcCCcccCceeeeCCcCeEEEe-cCceEEEecCChhHHHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 026175 28 TSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPI-GKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKE 106 (242)
Q Consensus 28 ~t~vgi~~~dgVvlaad~r~t~~~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~lr~~~~~~~~~~~g~~i~~~~ 106 (242)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+| ++|++++++|..+|++.|.+++|. +++.|++ ++..
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~-~~~~~~~------~~~~ 73 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER-KLEMHQG------HLLK 73 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHH-HHHHTTT------CHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHH-HHHHhcC------cHHH
Confidence 6899999999999999999998889999999999999 999999999999999999999998 4777654 4555
Q ss_pred HHHHHHHHHHhhcCCCCCcceEEEEEEEECCcEEEEEECCCCceeeeC---eEEEccchHhhHHHHhhhcC-CCCCHHHH
Q 026175 107 LHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDS---HVATGFGNHLARPILRDEWH-ENLSYEDG 182 (242)
Q Consensus 107 la~~l~~~~~~~r~~~rP~~vs~lvaG~D~~~p~Ly~idp~G~~~~~~---~~aiG~g~~~a~~~Le~~~~-~~~s~eea 182 (242)
.+..|++.++++|. +||++ ++++|+| +|+||++||+|++.+++ +.|+|+|+++++++||+.|+ ++||.+
T Consensus 74 ~~~~l~~~~~~~~~-~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~-- 146 (174)
T 1g3k_A 74 SAVELAKDWRTDRA-LRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH-- 146 (174)
T ss_dssp HHHHHHHHHHHSTT-GGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH--
T ss_pred HHHHHHHHHHhccC-cCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH--
Confidence 66677776665543 56765 5777787 79999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEc
Q 026175 183 VKLLEKCMRVLLYRDRSAVNKLQIAKIT 210 (242)
Q Consensus 183 i~l~~~~l~~~~~~d~~s~~~i~v~ii~ 210 (242)
+++++||+.+.+||..++++++|++|+
T Consensus 147 -~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 -EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp -HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred -HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999996
No 49
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=33.39 E-value=86 Score=24.18 Aligned_cols=50 Identities=6% Similarity=0.178 Sum_probs=35.0
Q ss_pred hHHHHhhhcCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCeEEeCC
Q 026175 165 ARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQP 219 (242)
Q Consensus 165 a~~~Le~~~~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~~~~~~ 219 (242)
+.+.++..+. .++.+||.+.++..|+..... .+.-.+.+++.+|.-...|
T Consensus 36 a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~g----~~~gY~fv~d~~g~~l~hP 85 (181)
T 3ub6_A 36 LEQGIHEYYK-SFDNDTARKMALDYFKRINDD----KGMIYMVVVDKNGVVLFDP 85 (181)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHT----CSSCEEEEECTTCBEEECT
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCccC----CCCCEEEEEeCCCCEEEeC
Confidence 4445554443 389999999999999988642 1123788889999776655
No 50
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=29.49 E-value=85 Score=24.95 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCe
Q 026175 174 HENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGT 214 (242)
Q Consensus 174 ~~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g~ 214 (242)
.+.+++++|.+++..++..+.++ +-++.|.|++..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCC
Confidence 36799999999999999999865 34799999999883
No 51
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=28.38 E-value=52 Score=24.74 Aligned_cols=35 Identities=3% Similarity=0.045 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q 026175 175 ENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEG 213 (242)
Q Consensus 175 ~~~s~eeai~l~~~~l~~~~~~d~~s~~~i~v~ii~k~g 213 (242)
+.+|+++|.+++..++..+.++ +-++.|.|++..|
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G 44 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGG 44 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCC
Confidence 3589999999999999999764 4579999999887
No 52
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.48 E-value=43 Score=22.92 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=31.8
Q ss_pred ECCcEEEEEECCCCc-eeeeCeEEEccchHhhHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Q 026175 135 KNGQKYLGMVSMIGV-NFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLL 194 (242)
Q Consensus 135 D~~~p~Ly~idp~G~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eeai~l~~~~l~~~~ 194 (242)
|.+|.+| .+.|+|+ .+...+...|.......+ --|.+|++||-+.+.++...+.
T Consensus 22 Dg~GL~L-~V~psG~K~w~~ryr~~Gk~~~~~LG-----~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 22 DSHGLYL-LVKPGGSRHWYLKYRISGKESRIALG-----AYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp CSTTEEE-EECTTSCEEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHT
T ss_pred cCCceEE-EEecCCCEEEEEEEEeCCeEEEEEeE-----CCCCCCHHHHHHHHHHHHHHHH
Confidence 5455555 6788886 333333332321111100 1268999999999998887774
Done!