Query 026176
Match_columns 242
No_of_seqs 148 out of 432
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 1.4E-65 3.1E-70 454.0 19.3 233 1-234 1-241 (260)
2 PF03556 Cullin_binding: Culli 100.0 2.1E-38 4.5E-43 253.1 9.8 108 127-234 1-109 (117)
3 PF14555 UBA_4: UBA-like domai 99.4 4.7E-13 1E-17 88.8 4.1 41 9-49 1-41 (43)
4 smart00804 TAP_C C-terminal do 97.7 5.9E-05 1.3E-09 54.2 4.3 45 3-47 7-51 (63)
5 PF03943 TAP_C: TAP C-terminal 97.6 5.7E-05 1.2E-09 51.9 2.7 39 10-48 2-40 (51)
6 KOG1364 Predicted ubiquitin re 97.2 0.00035 7.5E-09 65.1 3.7 44 5-48 3-47 (356)
7 PF00627 UBA: UBA/TS-N domain; 96.7 0.0028 6E-08 40.3 4.1 33 9-42 3-35 (37)
8 smart00165 UBA Ubiquitin assoc 95.6 0.022 4.7E-07 35.8 4.0 35 9-44 2-36 (37)
9 cd00194 UBA Ubiquitin Associat 95.5 0.028 6E-07 35.4 4.0 36 9-45 2-37 (38)
10 PTZ00184 calmodulin; Provision 94.4 1.8 4E-05 33.7 13.2 67 56-122 10-76 (149)
11 cd00051 EFh EF-hand, calcium b 94.0 0.35 7.6E-06 31.2 6.7 61 59-119 2-62 (63)
12 KOG3077 Uncharacterized conser 93.8 0.2 4.3E-06 45.4 6.8 88 146-235 79-166 (260)
13 PTZ00183 centrin; Provisional 93.2 3.5 7.6E-05 32.6 13.1 66 56-121 16-81 (158)
14 PF13833 EF-hand_8: EF-hand do 92.9 0.36 7.8E-06 32.2 5.4 50 72-121 3-53 (54)
15 cd05031 S-100A10_like S-100A10 92.3 0.57 1.2E-05 35.2 6.4 68 57-124 8-82 (94)
16 KOG2086 Protein tyrosine phosp 92.0 0.053 1.1E-06 51.4 0.4 41 7-47 3-43 (380)
17 cd00052 EH Eps15 homology doma 91.3 0.87 1.9E-05 31.0 6.0 62 60-123 2-63 (67)
18 TIGR00264 alpha-NAC-related pr 91.3 0.31 6.6E-06 39.1 4.0 34 9-42 79-112 (116)
19 PTZ00183 centrin; Provisional 91.2 1.4 3E-05 35.0 8.0 66 56-121 89-154 (158)
20 PRK06369 nac nascent polypepti 91.2 0.31 6.7E-06 39.1 4.0 36 8-43 76-111 (115)
21 cd05029 S-100A6 S-100A6: S-100 90.1 2 4.3E-05 32.3 7.4 67 57-123 10-81 (88)
22 smart00027 EH Eps15 homology d 90.0 1.2 2.6E-05 33.5 6.3 65 56-122 9-73 (96)
23 PF13499 EF-hand_7: EF-hand do 90.0 1.5 3.2E-05 30.2 6.2 62 58-119 1-66 (66)
24 PTZ00184 calmodulin; Provision 89.0 2.1 4.6E-05 33.3 7.2 20 105-124 96-115 (149)
25 cd05030 calgranulins Calgranul 87.5 2.3 5E-05 31.8 6.2 67 57-123 8-81 (88)
26 TIGR01446 DnaD_dom DnaD and ph 87.2 1.3 2.8E-05 31.6 4.5 56 73-131 15-72 (73)
27 cd05026 S-100Z S-100Z: S-100Z 85.8 5 0.00011 30.2 7.4 67 57-123 10-83 (93)
28 COG1308 EGD2 Transcription fac 85.3 1.3 2.8E-05 35.8 4.0 35 9-43 85-119 (122)
29 cd00213 S-100 S-100: S-100 dom 85.0 4.6 0.0001 29.5 6.7 66 57-122 8-80 (88)
30 cd05023 S-100A11 S-100A11: S-1 83.7 7.1 0.00015 29.4 7.3 67 57-123 9-82 (89)
31 cd05022 S-100A13 S-100A13: S-1 83.5 7.5 0.00016 29.4 7.3 66 57-122 8-76 (89)
32 PF09279 EF-hand_like: Phospho 83.5 2.2 4.7E-05 31.1 4.3 63 58-121 1-69 (83)
33 smart00546 CUE Domain that may 82.4 1.6 3.5E-05 28.2 2.9 38 10-47 4-42 (43)
34 KOG4351 Uncharacterized conser 82.1 0.48 1E-05 42.3 0.3 45 4-48 19-66 (244)
35 KOG0027 Calmodulin and related 81.5 15 0.00033 29.7 9.1 83 56-138 7-95 (151)
36 KOG2756 Predicted Mg2+-depende 80.9 1.2 2.5E-05 41.1 2.3 40 9-48 26-65 (349)
37 PF02845 CUE: CUE domain; Int 79.7 3.5 7.6E-05 26.6 3.7 38 9-46 2-40 (42)
38 cd05027 S-100B S-100B: S-100B 77.0 17 0.00036 27.2 7.3 66 57-122 8-80 (88)
39 cd05025 S-100A1 S-100A1: S-100 75.8 20 0.00044 26.5 7.5 67 57-123 9-82 (92)
40 PF05517 p25-alpha: p25-alpha 75.3 15 0.00032 30.5 7.3 76 59-134 1-88 (154)
41 KOG0036 Predicted mitochondria 75.3 9.1 0.0002 37.1 6.6 80 57-139 82-161 (463)
42 CHL00098 tsf elongation factor 75.2 4 8.6E-05 35.7 3.9 38 10-47 3-40 (200)
43 PRK12332 tsf elongation factor 75.1 4 8.7E-05 35.6 3.9 39 9-47 5-43 (198)
44 COG5126 FRQ1 Ca2+-binding prot 75.0 17 0.00036 30.8 7.5 69 53-121 88-156 (160)
45 COG5126 FRQ1 Ca2+-binding prot 74.5 30 0.00065 29.2 8.9 134 55-194 15-154 (160)
46 KOG0027 Calmodulin and related 73.0 26 0.00055 28.3 8.1 72 54-125 41-117 (151)
47 TIGR00116 tsf translation elon 72.5 5.4 0.00012 36.8 4.3 39 9-47 5-43 (290)
48 PRK09377 tsf elongation factor 71.2 6 0.00013 36.5 4.3 40 8-47 5-44 (290)
49 KOG0028 Ca2+-binding protein ( 70.3 51 0.0011 28.2 9.2 103 56-158 32-136 (172)
50 PF14658 EF-hand_9: EF-hand do 69.4 15 0.00032 26.6 5.1 51 71-121 12-64 (66)
51 KOG0036 Predicted mitochondria 68.8 56 0.0012 31.9 10.3 89 56-144 13-118 (463)
52 PF00036 EF-hand_1: EF hand; 68.7 3.7 8E-05 24.6 1.6 19 104-122 11-29 (29)
53 PRK10391 oriC-binding nucleoid 67.2 15 0.00033 26.9 4.8 40 111-152 2-41 (71)
54 PF08671 SinI: Anti-repressor 63.1 11 0.00024 23.1 3.0 28 188-215 3-30 (30)
55 PF13833 EF-hand_8: EF-hand do 62.7 12 0.00027 24.5 3.5 32 107-138 2-35 (54)
56 PF12096 DUF3572: Protein of u 62.5 16 0.00035 27.9 4.4 60 7-95 19-78 (88)
57 KOG4199 Uncharacterized conser 62.1 39 0.00084 32.5 7.7 150 10-162 81-242 (461)
58 cd03567 VHS_GGA VHS domain fam 61.8 79 0.0017 25.8 8.8 45 108-152 75-129 (139)
59 KOG1071 Mitochondrial translat 61.8 10 0.00022 35.6 3.8 37 6-42 44-80 (340)
60 PF03765 CRAL_TRIO_N: CRAL/TRI 61.1 8.6 0.00019 25.9 2.5 25 20-44 28-52 (55)
61 PF13405 EF-hand_6: EF-hand do 60.9 16 0.00034 21.6 3.4 30 58-87 1-31 (31)
62 PLN02964 phosphatidylserine de 60.7 74 0.0016 32.7 10.0 79 57-139 143-226 (644)
63 PRK05441 murQ N-acetylmuramic 60.6 11 0.00023 34.7 3.8 37 11-47 238-274 (299)
64 PF06972 DUF1296: Protein of u 60.3 22 0.00048 25.3 4.5 43 5-47 2-45 (60)
65 KOG2643 Ca2+ binding protein, 59.2 37 0.0008 33.3 7.2 83 72-158 301-389 (489)
66 TIGR00274 N-acetylmuramic acid 58.6 12 0.00025 34.4 3.7 36 11-46 233-268 (291)
67 smart00027 EH Eps15 homology d 58.2 29 0.00064 25.8 5.3 88 87-175 3-91 (96)
68 PF09107 SelB-wing_3: Elongati 56.9 14 0.0003 25.1 2.9 22 11-32 12-33 (50)
69 PF05042 Caleosin: Caleosin re 55.9 43 0.00093 28.8 6.4 62 54-115 93-160 (174)
70 PRK12570 N-acetylmuramic acid- 54.5 18 0.00038 33.3 4.1 37 11-47 234-270 (296)
71 KOG0030 Myosin essential light 52.8 1.4E+02 0.003 25.1 8.6 67 56-122 10-78 (152)
72 PF13499 EF-hand_7: EF-hand do 51.8 38 0.00083 22.9 4.6 42 100-141 7-49 (66)
73 COG2922 Smg Uncharacterized pr 51.6 12 0.00025 31.3 2.2 36 59-94 5-41 (157)
74 KOG3911 Nucleolar protein NOP5 50.9 1.6E+02 0.0034 28.1 9.7 122 92-216 25-198 (378)
75 PF12763 EF-hand_4: Cytoskelet 50.4 39 0.00085 26.3 4.9 66 54-122 7-72 (104)
76 PRK09430 djlA Dna-J like membr 50.1 1.9E+02 0.0042 26.1 10.1 136 3-142 71-229 (267)
77 COG0264 Tsf Translation elonga 49.8 22 0.00047 33.0 3.9 39 9-47 6-44 (296)
78 PRK10945 gene expression modul 48.1 38 0.00083 24.9 4.2 40 110-152 6-45 (72)
79 COG2103 Predicted sugar phosph 47.2 30 0.00064 31.9 4.3 38 10-47 235-272 (298)
80 PF13443 HTH_26: Cro/C1-type H 47.1 11 0.00024 25.6 1.2 37 54-94 22-58 (63)
81 KOG4380 Carnitine deficiency a 46.9 52 0.0011 28.9 5.5 73 18-96 71-152 (244)
82 PRK00116 ruvA Holliday junctio 46.8 46 0.00099 28.5 5.3 91 5-97 65-170 (192)
83 PRK02264 N(5),N(10)-methenylte 46.3 4.1 8.9E-05 38.0 -1.4 69 26-97 86-167 (317)
84 PLN02230 phosphoinositide phos 46.0 55 0.0012 33.3 6.4 69 52-121 24-102 (598)
85 KOG0028 Ca2+-binding protein ( 46.0 1E+02 0.0023 26.3 7.1 67 55-121 104-170 (172)
86 cd07311 terB_like_1 tellurium 43.7 79 0.0017 26.2 6.0 91 3-96 39-130 (150)
87 PF07261 DnaB_2: Replication i 42.1 4.2 9.2E-05 28.9 -1.6 59 73-134 15-75 (77)
88 cd00052 EH Eps15 homology doma 41.7 68 0.0015 21.3 4.6 33 103-136 9-41 (67)
89 cd00171 Sec7 Sec7 domain; Doma 41.0 2.1E+02 0.0046 24.2 8.5 35 89-123 123-163 (185)
90 PLN02964 phosphatidylserine de 40.7 2E+02 0.0044 29.5 9.6 64 59-122 181-244 (644)
91 cd00252 SPARC_EC SPARC_EC; ext 40.4 1.7E+02 0.0036 23.2 7.2 62 55-120 46-107 (116)
92 PLN02223 phosphoinositide phos 40.2 65 0.0014 32.4 5.8 69 52-121 11-92 (537)
93 PF10075 PCI_Csn8: COP9 signal 38.1 22 0.00048 28.6 1.9 37 12-48 100-136 (143)
94 TIGR00084 ruvA Holliday juncti 36.7 83 0.0018 27.0 5.3 41 3-43 62-103 (191)
95 TIGR03120 one_C_mch methenylte 36.7 5.7 0.00012 37.0 -2.0 71 25-97 83-166 (312)
96 PRK03980 flap endonuclease-1; 36.5 66 0.0014 29.5 4.9 76 10-94 177-270 (292)
97 PF07848 PaaX: PaaX-like prote 34.8 34 0.00074 24.8 2.2 39 57-95 4-42 (70)
98 cd00545 MCH Methenyltetrahydro 34.5 6.3 0.00014 36.7 -2.1 71 25-97 83-166 (312)
99 PRK13749 transcriptional regul 34.2 2.4E+02 0.0053 22.5 8.0 70 11-101 5-74 (121)
100 PHA01083 hypothetical protein 33.6 56 0.0012 27.4 3.5 46 73-122 43-88 (149)
101 PF03793 PASTA: PASTA domain; 31.8 33 0.00071 23.3 1.7 23 17-39 5-27 (63)
102 PLN02228 Phosphoinositide phos 31.5 1.6E+02 0.0036 29.7 7.1 68 52-121 19-92 (567)
103 PF12238 MSA-2c: Merozoite sur 31.5 74 0.0016 28.0 4.2 58 39-96 65-124 (205)
104 PLN02222 phosphoinositide phos 31.1 1.1E+02 0.0025 31.0 5.9 64 55-121 23-90 (581)
105 PF06992 Phage_lambda_P: Repli 31.0 1.8E+02 0.0039 26.2 6.5 31 111-141 66-96 (233)
106 PF11116 DUF2624: Protein of u 30.5 2.4E+02 0.0053 21.4 6.4 64 73-136 14-77 (85)
107 PF12244 DUF3606: Protein of u 29.3 1.1E+02 0.0025 21.1 4.1 42 3-45 14-55 (57)
108 PF01314 AFOR_C: Aldehyde ferr 29.1 28 0.0006 33.1 1.2 35 80-115 117-151 (382)
109 smart00862 Trans_reg_C Transcr 29.1 1.3E+02 0.0029 20.6 4.5 52 91-143 7-60 (78)
110 PF07531 TAFH: NHR1 homology t 28.7 1.2E+02 0.0026 23.5 4.5 64 78-147 12-83 (96)
111 PLN02952 phosphoinositide phos 28.7 1.7E+02 0.0036 29.9 6.7 68 52-120 33-109 (599)
112 PF01023 S_100: S-100/ICaBP ty 27.7 80 0.0017 20.7 2.9 28 57-84 6-35 (44)
113 PF07299 FBP: Fibronectin-bind 27.4 24 0.00052 31.1 0.4 52 3-67 47-98 (208)
114 PF11772 EpuA: DNA-directed RN 26.9 45 0.00097 22.5 1.6 16 200-215 30-45 (47)
115 COG3655 Predicted transcriptio 26.7 33 0.00071 25.4 1.0 28 70-97 39-66 (73)
116 cd03022 DsbA_HCCA_Iso DsbA fam 26.6 76 0.0017 25.9 3.3 39 55-93 102-140 (192)
117 COG1619 LdcA Uncharacterized p 26.4 1.5E+02 0.0031 27.8 5.4 81 23-104 28-123 (313)
118 PF14229 DUF4332: Domain of un 25.1 2.1E+02 0.0045 22.6 5.5 61 77-141 30-92 (122)
119 PRK12461 UDP-N-acetylglucosami 25.1 1.7E+02 0.0038 26.1 5.5 47 147-203 208-254 (255)
120 PF04361 DUF494: Protein of un 25.0 62 0.0013 27.0 2.5 36 59-94 5-41 (155)
121 PF01726 LexA_DNA_bind: LexA D 24.9 63 0.0014 22.9 2.2 24 1-24 1-27 (65)
122 PF12174 RST: RCD1-SRO-TAF4 (R 24.7 51 0.0011 24.0 1.7 16 107-122 39-54 (70)
123 PF14327 CSTF2_hinge: Hinge do 24.5 70 0.0015 23.8 2.4 38 3-41 25-63 (84)
124 COG3710 CadC DNA-binding winge 24.1 66 0.0014 26.5 2.5 70 86-158 28-103 (148)
125 KOG2873 Ubiquinol cytochrome c 23.8 1.7E+02 0.0036 27.1 5.1 50 147-198 201-253 (284)
126 PF10400 Vir_act_alpha_C: Viru 23.7 2.7E+02 0.0059 19.9 5.5 78 111-196 3-81 (90)
127 PF10036 RLL: Putative carniti 23.5 82 0.0018 28.3 3.1 29 75-103 56-85 (249)
128 PF14788 EF-hand_10: EF hand; 23.3 2.5E+02 0.0053 19.3 4.7 48 74-121 2-49 (51)
129 cd03019 DsbA_DsbA DsbA family, 23.2 67 0.0014 25.8 2.3 36 57-92 80-115 (178)
130 TIGR02051 MerR Hg(II)-responsi 23.0 3E+02 0.0065 21.6 6.0 65 12-97 2-66 (124)
131 PHA00680 hypothetical protein 22.9 2.9E+02 0.0062 21.9 5.7 72 82-153 60-136 (143)
132 PF11527 ARL2_Bind_BART: The A 22.8 46 0.001 26.2 1.2 38 55-97 42-79 (121)
133 PRK06771 hypothetical protein; 22.5 1E+02 0.0022 23.8 3.0 24 9-32 69-92 (93)
134 PF00486 Trans_reg_C: Transcri 22.2 1.4E+02 0.0031 20.5 3.6 49 94-143 10-59 (77)
135 PF13720 Acetyltransf_11: Udp 21.9 1.7E+02 0.0038 21.6 4.1 37 165-204 47-83 (83)
136 cd04766 HTH_HspR Helix-Turn-He 21.7 74 0.0016 23.5 2.1 86 12-142 4-89 (91)
137 PF06420 Mgm101p: Mitochondria 21.6 56 0.0012 27.9 1.5 16 76-91 112-127 (171)
138 PF01671 ASFV_360: African swi 21.5 2E+02 0.0043 25.5 5.0 98 78-191 2-115 (215)
139 cd04752 Commd4 COMM_Domain con 21.3 3.2E+02 0.0068 22.9 6.1 54 73-126 21-76 (174)
140 cd07025 Peptidase_S66 LD-Carbo 21.1 1.4E+02 0.003 27.0 4.2 83 23-106 16-115 (282)
141 PF13624 SurA_N_3: SurA N-term 20.5 86 0.0019 24.9 2.4 60 74-134 84-144 (154)
142 KOG4414 COP9 signalosome, subu 20.4 1.2E+02 0.0027 25.6 3.3 33 12-44 135-167 (197)
143 cd03024 DsbA_FrnE DsbA family, 20.2 1.1E+02 0.0023 25.3 3.0 38 55-92 110-147 (201)
144 PRK05289 UDP-N-acetylglucosami 20.1 2E+02 0.0043 25.6 4.9 48 147-204 212-259 (262)
145 KOG0041 Predicted Ca2+-binding 20.1 3.1E+02 0.0067 24.5 5.8 65 57-121 99-163 (244)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-65 Score=454.00 Aligned_cols=233 Identities=48% Similarity=0.850 Sum_probs=222.8
Q ss_pred CCCCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhh-hhhhccccCC------CCcCCHHHHHHHHHHhcCCCC-C
Q 026176 1 MHKLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGA-FDVFYSQPQS------KSLTDTRHLEELYNRYKDPYL-D 72 (242)
Q Consensus 1 m~~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A-~~~ff~~~~~------~~~~~~~~l~~lFd~Y~d~~~-d 72 (242)
|++|+..+++++++|+.+|++++.++..++++++|+++.| .+.||.++.. .++.+.+.++++|++|+||+. +
T Consensus 1 mnklk~~~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~ 80 (260)
T KOG3077|consen 1 MNKLKSSQKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDN 80 (260)
T ss_pred CCccchhHHHHHHhhcccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCccccc
Confidence 8999999999999999999999999999999999999999 6777777632 246788999999999999976 5
Q ss_pred ccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccchHHHHHHHH
Q 026176 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~ 152 (242)
.|++|||.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.+++|||+++||.+|+.++..+.|.+.||.+|+
T Consensus 81 ~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~iY~ 160 (260)
T KOG3077|consen 81 LIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKSIYR 160 (260)
T ss_pred ccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCCHhhhHHHHHHHHhhccccCCccccchhhH
Q 026176 153 FAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAISRDTWSQLLEFARVRQWTLHYQTMMQKAHG 232 (242)
Q Consensus 153 f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~~l~~~de~~aWP~ 232 (242)
|||+|++++|||+|++++||+||.+||+.+ +|++++|++||++++++.|+||||||+|+|.++++.++++||||+|||.
T Consensus 161 faf~fa~e~~qk~Ld~~~ai~~w~ll~~~~-~pll~~w~~FL~~~~~~~~~KDtW~~~l~Fs~~i~~dlSnYDeegAWP~ 239 (260)
T KOG3077|consen 161 FAFNFAKEPGQKSLDLETAISLWKLLFGQT-PPLLDQWIQFLKDSPNRAISKDTWNLLLDFSKTIDPDLSNYDEEGAWPV 239 (260)
T ss_pred hhhhhccCcCcCcCCHHHHHHHHHHHhCCC-CchHHHHHHHHHhCcCcccCcccHHHHHHHHHhcCccccCccccccchH
Confidence 999999999999999999999999999766 9999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 026176 233 LI 234 (242)
Q Consensus 233 l~ 234 (242)
||
T Consensus 240 li 241 (260)
T KOG3077|consen 240 LI 241 (260)
T ss_pred HH
Confidence 97
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=2.1e-38 Score=253.13 Aligned_cols=108 Identities=41% Similarity=0.783 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcc-chHHHHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCCHh
Q 026176 127 LDKFRERISFMRAELK-DEQKFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAISRD 205 (242)
Q Consensus 127 i~~lk~~l~~l~~~l~-~~~~Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~IskD 205 (242)
|++||++|++|+++|. +++.|++||+|||+|+|++|||+|++|+||+||++||+++.+|++++|++||+++++|+||||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD 80 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKD 80 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHH
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChh
Confidence 6899999999999998 677799999999999999999999999999999999998878999999999999999999999
Q ss_pred hhHHHHHHHHhhccccCCccccchhhHHH
Q 026176 206 TWSQLLEFARVRQWTLHYQTMMQKAHGLI 234 (242)
Q Consensus 206 ~W~~~l~F~~~~~~~l~~~de~~aWP~l~ 234 (242)
+|+|+++|+++++.++++|||++|||+||
T Consensus 81 ~W~~~l~F~~~~~~dls~Yde~~AWP~li 109 (117)
T PF03556_consen 81 TWNQFLDFFKTVDEDLSNYDEEGAWPSLI 109 (117)
T ss_dssp HHHHHHHHHHH-HCCHCC--TTSSS-HHH
T ss_pred HHHHHHHHHHhcCccccCCCCCCCCcHHH
Confidence 99999999999999999999999999997
No 3
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.37 E-value=4.7e-13 Score=88.80 Aligned_cols=41 Identities=41% Similarity=0.793 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccC
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ 49 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~ 49 (242)
+++|++||+|||+++.+|++||+.++|||+.||+.||+++.
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999864
No 4
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.69 E-value=5.9e-05 Score=54.16 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=41.4
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
.++..|.++|.+|+..||.+.+-++.+|+.++||++.|+..|-+-
T Consensus 7 ~~~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999763
No 5
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.56 E-value=5.7e-05 Score=51.92 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=34.7
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhcccc
Q 026176 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (242)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (242)
++|.+|+..||.+.+-|..||+.++||++.|+..|-...
T Consensus 2 ~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~ 40 (51)
T PF03943_consen 2 EMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELK 40 (51)
T ss_dssp HHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998654
No 6
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00035 Score=65.12 Aligned_cols=44 Identities=32% Similarity=0.583 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHhhhC-CCHHHHHHHHHhCCCCchhhhhhhcccc
Q 026176 5 SRSNRDKLQQFVSITG-ASEKAALQALKASDWHLEGAFDVFYSQP 48 (242)
Q Consensus 5 ~~~q~~~i~~F~~~T~-~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (242)
+.+++++|.+|+.||+ .+.+.|++||++.+|+++.||+.||++.
T Consensus 3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~ 47 (356)
T KOG1364|consen 3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHG 47 (356)
T ss_pred cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 4568899999999999 7899999999999999999999999875
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.73 E-value=0.0028 Score=40.28 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhh
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (242)
.+.|++.+++ |.+++.|++.|+.++||++.|++
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5789999999 99999999999999999999986
No 8
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.64 E-value=0.022 Score=35.76 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhh
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVF 44 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~f 44 (242)
++.|++++++ |.++..|++.|++++||++.|++-.
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678888888 9999999999999999999998753
No 9
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.46 E-value=0.028 Score=35.42 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhc
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFY 45 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff 45 (242)
.+.|++++++ |.++..|+..|+.++||++.|++-.+
T Consensus 2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3578888885 99999999999999999999997654
No 10
>PTZ00184 calmodulin; Provisional
Probab=94.43 E-value=1.8 Score=33.68 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
.+.+.+.|..+-......|+.+-+..++..+|.+|.+..+-.+.-.+....-|.++.++|+..|...
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3567778877643334589999999999999999987777777777888888999999999988763
No 11
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.96 E-value=0.35 Score=31.25 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHh
Q 026176 59 LEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGL 119 (242)
Q Consensus 59 l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~ 119 (242)
+.++|..|....++.|..+-+...++.+|..+.+..+-.+...+....-|.++.++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678888875556689999999999999988887777777788888788899999998754
No 12
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.2 Score=45.43 Aligned_cols=88 Identities=13% Similarity=-0.062 Sum_probs=73.1
Q ss_pred HHHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCCHhhhHHHHHHHHhhccccCCcc
Q 026176 146 KFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAISRDTWSQLLEFARVRQWTLHYQT 225 (242)
Q Consensus 146 ~Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~IskD~W~~~l~F~~~~~~~l~~~d 225 (242)
++.-.|...+.|+.+-|....++.++|-.|.+- ..+ ...+..|.-+-.-+.-...|-|+|.+.++|.+++-.+++.|.
T Consensus 79 ~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~-m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk 156 (260)
T KOG3077|consen 79 DNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AAT-MCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFK 156 (260)
T ss_pred ccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cch-hhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhh
Confidence 388889999999999999999999999999988 555 666777754443444589999999999999999867999999
Q ss_pred ccchhhHHHH
Q 026176 226 MMQKAHGLIL 235 (242)
Q Consensus 226 e~~aWP~l~~ 235 (242)
..-.||-.|-
T Consensus 157 ~iY~faf~fa 166 (260)
T KOG3077|consen 157 SIYRFAFNFA 166 (260)
T ss_pred HHHHhhhhhc
Confidence 8888876553
No 13
>PTZ00183 centrin; Provisional
Probab=93.18 E-value=3.5 Score=32.64 Aligned_cols=66 Identities=9% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
.+.+.++|..+-......|+.+-+..++.-+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 367778887765333458999999999999998877666666666677778899999999998765
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.85 E-value=0.36 Score=32.20 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred CccChHHHHHHHHHcCCC-CCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 72 DMILVDGITLLCNDLQVD-PQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 72 d~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
..|+.+.+.+.+..+|+. +.+-.+=.|...+-...-|.|+.+||+..|+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 478999999999889999 88888899999999999999999999999875
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.28 E-value=0.57 Score=35.22 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcC-CC-CCccChHHHHHHHHH-----cCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCC
Q 026176 57 RHLEELYNRYKD-PY-LDMILVDGITLLCND-----LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI 124 (242)
Q Consensus 57 ~~l~~lFd~Y~d-~~-~d~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~ 124 (242)
..+.+.|..|-+ +. ...|..+-+.+++.. +|..+....+--+.-.+....-|.|+.++|+..|..+.+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 567788999965 42 468999999998876 677876666666666778888899999999999988764
No 16
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.98 E-value=0.053 Score=51.41 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=37.8
Q ss_pred chHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 7 SNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 7 ~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
...+.+++|+++||.|+..|+.||...+|+++.|...+++.
T Consensus 3 ~p~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~ 43 (380)
T KOG2086|consen 3 IPLDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEA 43 (380)
T ss_pred CchhHHHHHhccCCCCccccccccccCCCchhhhhhhhccc
Confidence 34578999999999999999999999999999999999975
No 17
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=91.31 E-value=0.87 Score=31.02 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 60 EELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 60 ~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
.+.|..+-......|..+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 357888743334589999999999999985444333 33456677789999999999987653
No 18
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=91.28 E-value=0.31 Score=39.11 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhh
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (242)
.+.|.-.++-||+|++.|+..|+++|||+-.|+-
T Consensus 79 ~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 79 EDDIELVMKQCNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 4568889999999999999999999999999985
No 19
>PTZ00183 centrin; Provisional
Probab=91.24 E-value=1.4 Score=35.05 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
...+..+|..|-....+.|+.+.+..+|..+|..+.+-.+-.+...+....-|.|+.++|+..+..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 356677776664333446777777777777776665555555555565555677777777776654
No 20
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=91.22 E-value=0.31 Score=39.05 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhh
Q 026176 8 NRDKLQQFVSITGASEKAALQALKASDWHLEGAFDV 43 (242)
Q Consensus 8 q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ 43 (242)
..+.|.-.++-||+|++.|+..|+.+|+|+-.||-.
T Consensus 76 ~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQTGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 356688899999999999999999999999999853
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.06 E-value=2 Score=32.32 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCC-C-CCccChHHHHHHHHH---cCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 57 RHLEELYNRYKDP-Y-LDMILVDGITLLCND---LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 57 ~~l~~lFd~Y~d~-~-~d~I~~dG~~~~~~D---Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
..|.++|.+|... . .+.|..+.+.+++.. +|..+.+-.+--+-..+....-|.|+-++|+.-+.++-
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4677899999853 3 459999999999974 68777655565666677888889999999998887753
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=90.04 E-value=1.2 Score=33.49 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
...+.+.|..+-......|+.+-+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 467778888876544568999999999999998776655433 24566677999999999988774
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=89.97 E-value=1.5 Score=30.18 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCc-hH---HHHHHHhhcccccccccHHHHHHHh
Q 026176 58 HLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD-IV---MLVVSWHMKAATMCEFSKQEFIGGL 119 (242)
Q Consensus 58 ~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed-~~---~LvLa~~l~a~~~g~~tr~eF~~g~ 119 (242)
+|.++|+.|=......|+.+-+.+++..+|....+ .. +-.+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47788998876656789999999999999987522 11 1122334456667899999998754
No 24
>PTZ00184 calmodulin; Provisional
Probab=88.97 E-value=2.1 Score=33.33 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=10.7
Q ss_pred cccccccHHHHHHHhHHcCC
Q 026176 105 ATMCEFSKQEFIGGLQSLGI 124 (242)
Q Consensus 105 ~~~g~~tr~eF~~g~~~l~~ 124 (242)
..-|.+++++|..+++.+|.
T Consensus 96 ~~~g~i~~~e~~~~l~~~~~ 115 (149)
T PTZ00184 96 DGNGFISAAELRHVMTNLGE 115 (149)
T ss_pred CCCCeEeHHHHHHHHHHHCC
Confidence 33455555555555555543
No 25
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=87.48 E-value=2.3 Score=31.76 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCC--CCccChHHHHHHHH-HcCCCCC----chHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 57 RHLEELYNRYKDPY--LDMILVDGITLLCN-DLQVDPQ----DIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~--~d~I~~dG~~~~~~-DLgv~~e----d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
..|...|.+|...+ .+.|..+-+..++. .+|-.+. +-.+=-+...+....-|.|+-++|+..+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46778999999663 46999999999997 4443232 33333444555777789999999999988763
No 26
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=87.24 E-value=1.3 Score=31.63 Aligned_cols=56 Identities=7% Similarity=0.211 Sum_probs=40.9
Q ss_pred ccChHHHHHHHHHcCCCCCchHHHHHHHhh--cccccccccHHHHHHHhHHcCCCCHHHHH
Q 026176 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHM--KAATMCEFSKQEFIGGLQSLGIDSLDKFR 131 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~dsi~~lk 131 (242)
....+-+..++++.|.+|+ ++...+-+-+ +.++++.+. ..+..|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi~--~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYID--AILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHHH--HHHHHHHHcCCCCHHHHh
Confidence 4667888899999998754 6666666655 445555443 677779999999999875
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=85.84 E-value=5 Score=30.21 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCC--ccChHHHHHHHHH-c----CCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 57 RHLEELYNRYKDPYLD--MILVDGITLLCND-L----QVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d--~I~~dG~~~~~~D-L----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
..+.+.|.+|.+.+.| .|+.+-+.+++.. + +-.+.+-.+=-+...+....=|.|+-+||+.-+..+-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3455669999976554 5999999999976 3 3333334455566667777789999999999888764
No 28
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=85.27 E-value=1.3 Score=35.80 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhh
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDV 43 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ 43 (242)
.+-|.=-++=||+|++.|+..|+.+|.||-.||-.
T Consensus 85 eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 85 EEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34578889999999999999999999999999854
No 29
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=85.02 E-value=4.6 Score=29.52 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcC--CCCCccChHHHHHHHHH-cCCCC----CchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 57 RHLEELYNRYKD--PYLDMILVDGITLLCND-LQVDP----QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 57 ~~l~~lFd~Y~d--~~~d~I~~dG~~~~~~D-Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
+.+.+.|..|-. ...+.|..+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..+..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 567778999876 44568999999999976 56433 23334344455677778999999999988875
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=83.67 E-value=7.1 Score=29.38 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCCC--ccChHHHHHHHHHc-----CCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 57 RHLEELYNRYKDPYLD--MILVDGITLLCNDL-----QVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d--~I~~dG~~~~~~DL-----gv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
..|.++|.+|.+.+.+ .|..+.+.++++.- +-..++..+--+.-.+....=|.|+-+||+.-+.++-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5678899999876543 79999999999875 2222333333444566777779999999998877763
No 31
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=83.47 E-value=7.5 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcC-CCCCccChHHHHHHHHH-cCCCCCc-hHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 57 RHLEELYNRYKD-PYLDMILVDGITLLCND-LQVDPQD-IVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 57 ~~l~~lFd~Y~d-~~~d~I~~dG~~~~~~D-Lgv~~ed-~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
..|.+.|..|.. +..+.|+.+.+..++.. ||-...+ -.+=-+...+....=|.|+-+||+.-+..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 567789999976 56679999999999988 9844444 333344455677778999999999888775
No 32
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=83.47 E-value=2.2 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCccChHHHHHHHHHc----CCCCCchHHHHHHHhhc--ccccccccHHHHHHHhHH
Q 026176 58 HLEELYNRYKDPYLDMILVDGITLLCNDL----QVDPQDIVMLVVSWHMK--AATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 58 ~l~~lFd~Y~d~~~d~I~~dG~~~~~~DL----gv~~ed~~~LvLa~~l~--a~~~g~~tr~eF~~g~~~ 121 (242)
.|..+|.+|.. +...|+.+++.+|+.+- .++++.+.-++--+.-. ....+.+|.++|+.-|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 47889999987 56799999999999643 33445555554444222 235689999999987744
No 33
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=82.36 E-value=1.6 Score=28.21 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHhh-hCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 10 DKLQQFVSI-TGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 10 ~~i~~F~~~-T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
+.|.+..++ =+.++...+..|+++++|++.|++...+.
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 345555554 46689999999999999999999987654
No 34
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=0.48 Score=42.26 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHhhhCCC--H-HHHHHHHHhCCCCchhhhhhhcccc
Q 026176 4 LSRSNRDKLQQFVSITGAS--E-KAALQALKASDWHLEGAFDVFYSQP 48 (242)
Q Consensus 4 l~~~q~~~i~~F~~~T~~s--~-~~A~~~L~~~~w~le~A~~~ff~~~ 48 (242)
-+.++..+|-+|-.+++.. + ..|+.||+-.+|+|..|+..||+..
T Consensus 19 tt~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~ 66 (244)
T KOG4351|consen 19 TTTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQD 66 (244)
T ss_pred CCCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCC
Confidence 3566788999999998865 5 7799999999999999999999875
No 35
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=81.51 E-value=15 Score=29.67 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCC------CHHH
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGID------SLDK 129 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~d------si~~ 129 (242)
...+.+.|..+-......|..+=+...+..||.+|....+-.+-..+....-|.|+.++|+.-|...+.. +.+.
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 4678888888865545689999999999999999999999999999999999999999999999887643 2335
Q ss_pred HHHHHHHHH
Q 026176 130 FRERISFMR 138 (242)
Q Consensus 130 lk~~l~~l~ 138 (242)
++....-+.
T Consensus 87 l~eaF~~fD 95 (151)
T KOG0027|consen 87 LKEAFRVFD 95 (151)
T ss_pred HHHHHHHHc
Confidence 555544444
No 36
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=80.87 E-value=1.2 Score=41.10 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhcccc
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (242)
++++-+|..+|.+.+..|+.+|..++|+++.|++.||...
T Consensus 26 ~~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 26 RLLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 4667889999999999999999999999999999999864
No 37
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=79.66 E-value=3.5 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=30.6
Q ss_pred HHHHHHHHhhh-CCCHHHHHHHHHhCCCCchhhhhhhcc
Q 026176 9 RDKLQQFVSIT-GASEKAALQALKASDWHLEGAFDVFYS 46 (242)
Q Consensus 9 ~~~i~~F~~~T-~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (242)
.+.|++..++. +.+++.-+..|++++++++.|++...+
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45677777776 457899999999999999999998654
No 38
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=77.02 E-value=17 Score=27.22 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcC-CCCC-ccChHHHHHHHHH-----cCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 57 RHLEELYNRYKD-PYLD-MILVDGITLLCND-----LQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 57 ~~l~~lFd~Y~d-~~~d-~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
..|.+.|..|.+ .... .|..+-+..++.. +|-.++.-.+=-+--.+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467889999963 3334 5999999999999 9977654433344445577788999999999876654
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=75.79 E-value=20 Score=26.47 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCC-CCC-ccChHHHHHHHHH-cCC----CCCchHHHHHHHhhcccccccccHHHHHHHhHHcC
Q 026176 57 RHLEELYNRYKDP-YLD-MILVDGITLLCND-LQV----DPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG 123 (242)
Q Consensus 57 ~~l~~lFd~Y~d~-~~d-~I~~dG~~~~~~D-Lgv----~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~ 123 (242)
..|.+.|..|-|. ... .|..+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 5688899999633 334 5999999999975 553 44444444455566778889999999998877653
No 40
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=75.33 E-value=15 Score=30.46 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=52.1
Q ss_pred HHHHHHHhcC---CCCCccChHHHHHHHHHcCCCCC---chHHHHHHHhhcccccccccHHHHHHHhHHc----CCC--C
Q 026176 59 LEELYNRYKD---PYLDMILVDGITLLCNDLQVDPQ---DIVMLVVSWHMKAATMCEFSKQEFIGGLQSL----GID--S 126 (242)
Q Consensus 59 l~~lFd~Y~d---~~~d~I~~dG~~~~~~DLgv~~e---d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l----~~d--s 126 (242)
|+++|..|.. .....|+.....++|.|.||=.. ...+=++-.+++++.-..|+-++|+..+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 6789999952 23458999999999999999542 2233344456677776679999999999875 333 5
Q ss_pred HHHHHHHH
Q 026176 127 LDKFRERI 134 (242)
Q Consensus 127 i~~lk~~l 134 (242)
.+++...|
T Consensus 81 ~~~~~~kl 88 (154)
T PF05517_consen 81 AEELKEKL 88 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666666
No 41
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=75.30 E-value=9.1 Score=37.14 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHHH
Q 026176 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISF 136 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~ 136 (242)
.+|-.+|.+-.-..+..|++..|.++|.|+|++++|-..--+...+--..-+.|.-+||.+-+.-.- .+.|+.-+..
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~~ 158 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYDF 158 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHHh
Confidence 4455555544433345899999999999999999998877777777777777899998887654433 3344444444
Q ss_pred HHH
Q 026176 137 MRA 139 (242)
Q Consensus 137 l~~ 139 (242)
++.
T Consensus 159 W~h 161 (463)
T KOG0036|consen 159 WRH 161 (463)
T ss_pred hhh
Confidence 443
No 42
>CHL00098 tsf elongation factor Ts
Probab=75.17 E-value=4 Score=35.68 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
++|++..+.||+.--.+...|..++||++.|++--=.+
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 57999999999999999999999999999999765443
No 43
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=75.12 E-value=4 Score=35.56 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
.++|++..+.||++--.+...|..+++|++.|++--=.+
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999999876443
No 44
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=74.98 E-value=17 Score=30.77 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 53 LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 53 ~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
...+.+|...|.-|=.+....|..+=+...++-||-+..+-.+=-|--.+.-..-|.|+.++|++.+..
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 445788888888887766668999999999999999887766666666666667899999999988765
No 45
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=74.46 E-value=30 Score=29.24 Aligned_cols=134 Identities=11% Similarity=0.115 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHhc--CCC-CCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcC--CCCHHH
Q 026176 55 DTRHLEELYNRYK--DPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLG--IDSLDK 129 (242)
Q Consensus 55 ~~~~l~~lFd~Y~--d~~-~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~--~dsi~~ 129 (242)
+...+.+|.+.|+ |++ ...|+-+-+...+.-||.+|.+..+.-|..-+.+ .-|.++-.+|+..|...- -++-++
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 4566666666666 333 3489999999999999999999999888888888 677999999999998754 345677
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCC-CCcccHHHHHHHH
Q 026176 130 FRERISFMRAELKDEQKFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAE-KQWPLVDHWCQFL 194 (242)
Q Consensus 130 lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~-~~~~~l~~W~~FL 194 (242)
|+...+-.+..=.---...++.+. .++-|.|.-+ +....+.+.+=+. .+.=-.+.+++.+
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~v----l~~lge~~~d-eev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRV----LKSLGERLSD-EEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHH----HHhhcccCCH-HHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 887776665321100012333222 2244555444 5555665555432 2233345555543
No 46
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=72.95 E-value=26 Score=28.33 Aligned_cols=72 Identities=18% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCch----HHHHHHHh-hcccccccccHHHHHHHhHHcCCC
Q 026176 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDI----VMLVVSWH-MKAATMCEFSKQEFIGGLQSLGID 125 (242)
Q Consensus 54 ~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~----~~LvLa~~-l~a~~~g~~tr~eF~~g~~~l~~d 125 (242)
+....+..+++++-.+.+..|+.+-...++...+....+. ..+.=|+. +-....|.||.+|+..-|+.+|-.
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 4678999999999876667899999999999888876543 36666654 466778999999999999999843
No 47
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=72.45 E-value=5.4 Score=36.79 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
.+.|++..+.||+.--.++..|..++||++.|++--=..
T Consensus 5 a~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkk 43 (290)
T TIGR00116 5 AQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRES 43 (290)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999999865433
No 48
>PRK09377 tsf elongation factor Ts; Provisional
Probab=71.19 E-value=6 Score=36.51 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 8 NRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 8 q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
..++|++..+.||+.--.+++.|..+++|++.|++--=..
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999866443
No 49
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=70.29 E-value=51 Score=28.19 Aligned_cols=103 Identities=10% Similarity=0.170 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc--CCCCHHHHHHH
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL--GIDSLDKFRER 133 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l--~~dsi~~lk~~ 133 (242)
..+++.-|+-+-....+.|+.+++--=.-.||.+|..-.++-|.--...+.-|.|+-++|+.-|... .-||.+.++..
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 3566666666654445799999996666789999998888877777777778999999999998663 24688888887
Q ss_pred HHHHHHHccchHHHHHHHHHHhHhh
Q 026176 134 ISFMRAELKDEQKFREIYNFAFAWA 158 (242)
Q Consensus 134 l~~l~~~l~~~~~Fk~~Y~f~F~f~ 158 (242)
+...+..=.-.-.++.+-+-++.++
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhC
Confidence 7643321111111555555555554
No 50
>PF14658 EF-hand_9: EF-hand domain
Probab=69.37 E-value=15 Score=26.62 Aligned_cols=51 Identities=6% Similarity=0.079 Sum_probs=45.7
Q ss_pred CCccChHHHHHHHHHcCC-CCCchHHHHHHHhhccccc-ccccHHHHHHHhHH
Q 026176 71 LDMILVDGITLLCNDLQV-DPQDIVMLVVSWHMKAATM-CEFSKQEFIGGLQS 121 (242)
Q Consensus 71 ~d~I~~dG~~~~~~DLgv-~~ed~~~LvLa~~l~a~~~-g~~tr~eF~~g~~~ 121 (242)
..+|.+.-+..|+..+|- +|+|-.+=-|+-.+-...- |.+.+++|+..|++
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 357889999999999999 9999999999999988777 99999999999875
No 51
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=68.76 E-value=56 Score=31.91 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCC-CCchHHHHHHHhhcccccccccHHHHHHHhHHc------------
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVD-PQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL------------ 122 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l------------ 122 (242)
..++..+|+.+-......++.+.+.+-++.|+.. |..-..=.|...+.+..-|...-++|.+.+..-
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD 92 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSID 92 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhc
Confidence 4678889999876555689999999999999998 887788888899999999999999999988653
Q ss_pred ----CCCCHHHHHHHHHHHHHHccch
Q 026176 123 ----GIDSLDKFRERISFMRAELKDE 144 (242)
Q Consensus 123 ----~~dsi~~lk~~l~~l~~~l~~~ 144 (242)
|+-.+..|..+|.++-.+|++.
T Consensus 93 ~~hdG~i~~~Ei~~~l~~~gi~l~de 118 (463)
T KOG0036|consen 93 LEHDGKIDPNEIWRYLKDLGIQLSDE 118 (463)
T ss_pred cccCCccCHHHHHHHHHHhCCccCHH
Confidence 3345667777777777666543
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=68.69 E-value=3.7 Score=24.56 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=13.6
Q ss_pred ccccccccHHHHHHHhHHc
Q 026176 104 AATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 104 a~~~g~~tr~eF~~g~~~l 122 (242)
...=|.|+.+||+.+|++|
T Consensus 11 ~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 11 KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TTSSSEEEHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHhC
Confidence 3445788888888887764
No 53
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=67.24 E-value=15 Score=26.90 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=32.7
Q ss_pred cHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccchHHHHHHHH
Q 026176 111 SKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (242)
Q Consensus 111 tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~ 152 (242)
|+.+|+--+++ |.|++.|-+.+..++..|.++.+...+|+
T Consensus 2 tk~eyLlkfRk--css~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKFRK--ISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHHHh--cCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 67788765555 99999999999999999998777666665
No 54
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=63.14 E-value=11 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.667 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCCCCHhhhHHHHHHHH
Q 026176 188 DHWCQFLQAKHNKAISRDTWSQLLEFAR 215 (242)
Q Consensus 188 ~~W~~FL~~~~~k~IskD~W~~~l~F~~ 215 (242)
..|++.+.+-..-+||++.-+.||.|.+
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4799999988889999999999998863
No 55
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=62.67 E-value=12 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=23.2
Q ss_pred cccccHHHHHHHhHHcCCC--CHHHHHHHHHHHH
Q 026176 107 MCEFSKQEFIGGLQSLGID--SLDKFRERISFMR 138 (242)
Q Consensus 107 ~g~~tr~eF~~g~~~l~~d--si~~lk~~l~~l~ 138 (242)
-|.|++++|...++.+|.. |.+.++..+..+.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D 35 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFD 35 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHT
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcc
Confidence 3899999999999888765 5555555555544
No 56
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=62.47 E-value=16 Score=27.89 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=38.0
Q ss_pred chHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHc
Q 026176 7 SNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDL 86 (242)
Q Consensus 7 ~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DL 86 (242)
.+.+.+-.|+..||+++..=+.-.. ++.=+-.+-|-+-.. ..=++.||+.+
T Consensus 19 ~d~e~l~rFLa~TG~~p~~LR~~a~-----------------------dp~FL~~VLdFl~~d------e~~l~af~~a~ 69 (88)
T PF12096_consen 19 GDPERLPRFLALTGLSPDDLRAAAG-----------------------DPAFLAAVLDFLLMD------EAWLLAFCDAA 69 (88)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHcc-----------------------ChHHHHHHHHHHHcc------hHHHHHHHHHc
Confidence 3467788899999998876554332 223333333333322 33467999999
Q ss_pred CCCCCchHH
Q 026176 87 QVDPQDIVM 95 (242)
Q Consensus 87 gv~~ed~~~ 95 (242)
|++|+.+..
T Consensus 70 ~~~p~~v~~ 78 (88)
T PF12096_consen 70 GIPPEAVAA 78 (88)
T ss_pred CcChhHHHH
Confidence 999986543
No 57
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=39 Score=32.48 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=93.5
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCC-
Q 026176 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQV- 88 (242)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv- 88 (242)
+.+.+|+. .|...-|.++|..-+.++..-+...=-..++..++-.+.|+.+ .+.-+.+||-.+.+|+.-..+-|..
T Consensus 81 ~ll~~l~d--~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al-~~lt~~qpdl~da~g~~vvv~lL~~~ 157 (461)
T KOG4199|consen 81 ELLEQLAD--ECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAI-NSLTHKQPDLFDAEAMAVVLKLLALK 157 (461)
T ss_pred HHHHHHHH--HHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHH-HHhhcCCcchhccccHHHHHHHHhcc
Confidence 45667774 6666778888888888877766665421122122223444443 3344556788888888877775554
Q ss_pred -CCCchHHHHHHHhhcccccccccHHHHHHH-----h-HHcCCCCH-HHHHHHHHHHHHHccchH-H--HHHHHHHHhHh
Q 026176 89 -DPQDIVMLVVSWHMKAATMCEFSKQEFIGG-----L-QSLGIDSL-DKFRERISFMRAELKDEQ-K--FREIYNFAFAW 157 (242)
Q Consensus 89 -~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g-----~-~~l~~dsi-~~lk~~l~~l~~~l~~~~-~--Fk~~Y~f~F~f 157 (242)
+-+|+..+-++|.-+|-.|-+..|..|++- + +.+.-.+- .-.|.....++.-+.|+. . |-..|.|+=.+
T Consensus 158 ~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~i 237 (461)
T KOG4199|consen 158 VESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTI 237 (461)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHH
Confidence 557789999999999999999999999863 1 11222222 234444455554444332 1 67777777777
Q ss_pred hhhcC
Q 026176 158 AKEKG 162 (242)
Q Consensus 158 ~k~~g 162 (242)
+++.+
T Consensus 238 a~e~~ 242 (461)
T KOG4199|consen 238 AKEGI 242 (461)
T ss_pred HHhhh
Confidence 76653
No 58
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.85 E-value=79 Score=25.85 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=27.6
Q ss_pred ccccHHHHHHHhHHcCC------CCHHHHHH----HHHHHHHHccchHHHHHHHH
Q 026176 108 CEFSKQEFIGGLQSLGI------DSLDKFRE----RISFMRAELKDEQKFREIYN 152 (242)
Q Consensus 108 g~~tr~eF~~g~~~l~~------dsi~~lk~----~l~~l~~~l~~~~~Fk~~Y~ 152 (242)
-+|.+.+|++-+.++-- .+....|. .|..|...+.+.+.|++.|+
T Consensus 75 ~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 75 SEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 48889999998887542 24444444 44555556655555555554
No 59
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=61.84 E-value=10 Score=35.56 Aligned_cols=37 Identities=27% Similarity=0.187 Sum_probs=34.0
Q ss_pred cchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhh
Q 026176 6 RSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFD 42 (242)
Q Consensus 6 ~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~ 42 (242)
+.++++|.+..+=||++-...++.|+.+||||..|..
T Consensus 44 ~~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 44 ASSKALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 3589999999999999999999999999999998754
No 60
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=61.14 E-value=8.6 Score=25.87 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhCCCCchhhhhhh
Q 026176 20 GASEKAALQALKASDWHLEGAFDVF 44 (242)
Q Consensus 20 ~~s~~~A~~~L~~~~w~le~A~~~f 44 (242)
.+++..-.+||.+.+||++.|...+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 3467889999999999999998764
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=60.91 E-value=16 Score=21.57 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCCCccChHHHHHHHH-HcC
Q 026176 58 HLEELYNRYKDPYLDMILVDGITLLCN-DLQ 87 (242)
Q Consensus 58 ~l~~lFd~Y~d~~~d~I~~dG~~~~~~-DLg 87 (242)
++.++|+.|=.+....|+.+=+...+. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 356677777443345777777777777 565
No 62
>PLN02964 phosphatidylserine decarboxylase
Probab=60.72 E-value=74 Score=32.68 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCCCccChHHHHHHHHHcC-CCCCchH---HHHHHHhhcccccccccHHHHHHHhHHcCC-CCHHHHH
Q 026176 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQ-VDPQDIV---MLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFR 131 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLg-v~~ed~~---~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-dsi~~lk 131 (242)
..+.+.|+.+-...+..| +...+..|| .+|++-. +--+...+....-|.|+.+||+..|..++. .+-++++
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 444455555543222234 666788899 5886664 223333456666789999999999988874 5666677
Q ss_pred HHHHHHHH
Q 026176 132 ERISFMRA 139 (242)
Q Consensus 132 ~~l~~l~~ 139 (242)
.....++.
T Consensus 219 eaFk~fDk 226 (644)
T PLN02964 219 ELFKAADL 226 (644)
T ss_pred HHHHHhCC
Confidence 77766653
No 63
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=60.56 E-value=11 Score=34.69 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
+++=.+.+||+++++|.+.|+++++++-.|+-.--.+
T Consensus 238 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 238 AVRIVMEATGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3556899999999999999999999999999876543
No 64
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=60.33 E-value=22 Score=25.27 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=37.9
Q ss_pred CcchHHHHHHHHhhhCC-CHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 5 SRSNRDKLQQFVSITGA-SEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 5 ~~~q~~~i~~F~~~T~~-s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
.++-+..|+...++||+ |++.--..|..+|-|-+.|++.-...
T Consensus 2 P~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 2 PAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 35567889999999999 99999999999999999999987764
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=59.18 E-value=37 Score=33.32 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=60.8
Q ss_pred CccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccc------hH
Q 026176 72 DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKD------EQ 145 (242)
Q Consensus 72 d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~------~~ 145 (242)
..+.+|-..+|.++|..+.-.+...-.. ...-|.||..+|-.-+-.+-.-+.++...++.+++++..+ -.
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF~~~~----~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEFERFD----KGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhC----cccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 4789999999999998665444433322 2333999999999998887666667777777888877754 24
Q ss_pred HHHHHHHHHhHhh
Q 026176 146 KFREIYNFAFAWA 158 (242)
Q Consensus 146 ~Fk~~Y~f~F~f~ 158 (242)
+|+.|++|..+.+
T Consensus 377 Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 377 EFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHhhhh
Confidence 6999999986654
No 66
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=58.56 E-value=12 Score=34.38 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhcc
Q 026176 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYS 46 (242)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~ 46 (242)
+++=.+++||+|.++|...|.++++++-.||-.--.
T Consensus 233 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~ 268 (291)
T TIGR00274 233 AVRIVRQATDCNKELAEQTLLAADQNVKLAIVMILS 268 (291)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 355689999999999999999999999999986544
No 67
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=58.20 E-value=29 Score=25.78 Aligned_cols=88 Identities=7% Similarity=-0.021 Sum_probs=52.7
Q ss_pred CCCCCchHHHHHHHhh-cccccccccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccchHHHHHHHHHHhHhhhhcCccc
Q 026176 87 QVDPQDIVMLVVSWHM-KAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNFAFAWAKEKGQKS 165 (242)
Q Consensus 87 gv~~ed~~~LvLa~~l-~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~k~~gqk~ 165 (242)
+++++++..+--+... -...-|.|+.+++...|+.+|+ +-+.++..+......-...-.|.+|+...-..++-...+-
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~ 81 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYP 81 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence 3455555555555544 4456799999999999999886 3344444444332111111237777777666666555666
Q ss_pred ccHHHHHHHH
Q 026176 166 LALDTAIGMW 175 (242)
Q Consensus 166 l~~d~Ai~~W 175 (242)
|+.++=-.+|
T Consensus 82 ~~~~~~~~~~ 91 (96)
T smart00027 82 IPASLPPSLI 91 (96)
T ss_pred CCccCCHhhc
Confidence 6666544444
No 68
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=56.94 E-value=14 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.0
Q ss_pred HHHHHHhhhCCCHHHHHHHHHh
Q 026176 11 KLQQFVSITGASEKAALQALKA 32 (242)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~ 32 (242)
.|++|.+.+|+|.+.|+.+|+-
T Consensus 12 tv~~~rd~lg~sRK~ai~lLE~ 33 (50)
T PF09107_consen 12 TVAEFRDLLGLSRKYAIPLLEY 33 (50)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHH
T ss_pred cHHHHHHHHCccHHHHHHHHHH
Confidence 3789999999999999999974
No 69
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=55.92 E-value=43 Score=28.75 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHhcCCCCCccChHHHHHHHHH--cCCCC----CchHHHHHHHhhcccccccccHHHH
Q 026176 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCND--LQVDP----QDIVMLVVSWHMKAATMCEFSKQEF 115 (242)
Q Consensus 54 ~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~D--Lgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF 115 (242)
-.+++.+++|.||....+|.+...-+.++... .=.|| ....-..+.|.|-.+.-|..+||.-
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 35799999999999877888999988888875 22333 2244556777887778888887764
No 70
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.52 E-value=18 Score=33.29 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.0
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
+++=.+++||+++++|...|.++++.+-.||-.--.+
T Consensus 234 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 234 AVRIVMQATGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 3566899999999999999999999999999876543
No 71
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=52.75 E-value=1.4e+02 Score=25.06 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccc--cccccHHHHHHHhHHc
Q 026176 56 TRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAAT--MCEFSKQEFIGGLQSL 122 (242)
Q Consensus 56 ~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~--~g~~tr~eF~~g~~~l 122 (242)
...+.++|+-|-......|+...+---+..||.+|.+..++-..-...+.. +-.++-++|+--++.+
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 467777777665444458999999999999999998887776666666663 3366666666555444
No 72
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=51.80 E-value=38 Score=22.86 Aligned_cols=42 Identities=24% Similarity=0.178 Sum_probs=31.2
Q ss_pred HhhcccccccccHHHHHHHhHHcCCCC-HHHHHHHHHHHHHHc
Q 026176 100 WHMKAATMCEFSKQEFIGGLQSLGIDS-LDKFRERISFMRAEL 141 (242)
Q Consensus 100 ~~l~a~~~g~~tr~eF~~g~~~l~~ds-i~~lk~~l~~l~~~l 141 (242)
..+-...-|.|+++|+...++.++... -..++..+..+-+.+
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF 49 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 345566779999999999999998654 555666666666655
No 73
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.56 E-value=12 Score=31.31 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCC-ccChHHHHHHHHHcCCCCCchH
Q 026176 59 LEELYNRYKDPYLD-MILVDGITLLCNDLQVDPQDIV 94 (242)
Q Consensus 59 l~~lFd~Y~d~~~d-~I~~dG~~~~~~DLgv~~ed~~ 94 (242)
|-=||+.|.+.+.+ .++.|.+..-++|.|.+++|+-
T Consensus 5 l~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI~ 41 (157)
T COG2922 5 LMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDIY 41 (157)
T ss_pred HHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHHH
Confidence 44589999987665 7899999999999999998863
No 74
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=50.91 E-value=1.6e+02 Score=28.14 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=76.0
Q ss_pred chHHHHHHHhhccccccc-ccHHHHHHHhHHcC-C----CCH---HHHHHHHHHHHHHc---------------------
Q 026176 92 DIVMLVVSWHMKAATMCE-FSKQEFIGGLQSLG-I----DSL---DKFRERISFMRAEL--------------------- 141 (242)
Q Consensus 92 d~~~LvLa~~l~a~~~g~-~tr~eF~~g~~~l~-~----dsi---~~lk~~l~~l~~~l--------------------- 141 (242)
|-++=+|=-.+.|.+.-+ |++.+|++-|+.|- | |-. +.|-..|.+|..-.
T Consensus 25 drAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f~~~~a~i~F~~~FwktM~rEW 104 (378)
T KOG3911|consen 25 DRALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIFTSTEAQILFVSAFWKTMCREW 104 (378)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhhh
Confidence 344445555666666554 99999999999874 2 110 22333333332222
Q ss_pred ------cchHH---HHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcC-----CC-------CcccHHHHHHHHHhhcCC
Q 026176 142 ------KDEQK---FREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFA-----EK-------QWPLVDHWCQFLQAKHNK 200 (242)
Q Consensus 142 ------~~~~~---Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~-----~~-------~~~~l~~W~~FL~~~~~k 200 (242)
+-+.. -+.+-+++|.+.+..|= .-+.--+||+.+.. .. .+.+++-|++=|....+.
T Consensus 105 ~gIDr~RlDKflmLiRrvlr~~l~~Lk~~~W---~~~li~e~~~~~q~~~~~~~s~~np~Gi~fHf~dI~ldEL~kv~~~ 181 (378)
T KOG3911|consen 105 FGIDRLRLDKFLMLIRRVLRASLRVLKERNW---EKDLIDEYLKVLQEWVLSPDSQSNPNGIKFHFADILLDELDKVGGE 181 (378)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHHhhcCCCCCCCCCccchhHHHHHHHHHHHhcCC
Confidence 21111 26777888888877543 33444467776653 11 245799999999888899
Q ss_pred CCCHhhhHHHHH-HHHh
Q 026176 201 AISRDTWSQLLE-FARV 216 (242)
Q Consensus 201 ~IskD~W~~~l~-F~~~ 216 (242)
.++.|+|+++++ |++.
T Consensus 182 e~~~~q~~~~~d~~~~~ 198 (378)
T KOG3911|consen 182 ELTADQNLLFIDPFCRI 198 (378)
T ss_pred cchhhhhhcccCHHHHH
Confidence 999999999875 4443
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=50.43 E-value=39 Score=26.28 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 54 ~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
...+.-.++|+... +..+.|+.+....++..-|++.+.+..+. .+.-...-|..+++||+-+|+=+
T Consensus 7 ~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW--~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 7 EEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIW--NLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHH--HHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHH--hhhcCCCCCcCCHHHHHHHHHHH
Confidence 34577888999875 55578999999999999999876443332 23356678999999999999864
No 76
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=50.14 E-value=1.9e+02 Score=26.05 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=81.1
Q ss_pred CCCcchHHHHHHHHhhhCCCHHH---HHHHHHhC---CCCchhhhhhhccccCCCCcCCHHHH----HHHHH-HhcCCCC
Q 026176 3 KLSRSNRDKLQQFVSITGASEKA---ALQALKAS---DWHLEGAFDVFYSQPQSKSLTDTRHL----EELYN-RYKDPYL 71 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~---A~~~L~~~---~w~le~A~~~ff~~~~~~~~~~~~~l----~~lFd-~Y~d~~~ 71 (242)
+.+..+.+.++.++.-.+.+++. |+...+.. .-+++.-+..|-..-. ..+..+ +-+|. -|+|..-
T Consensus 71 ~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~----~r~~l~~~lL~~l~~vA~ADG~l 146 (267)
T PRK09430 71 RVTEADIRIASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG----GRFDLLRMFLEIQIQAAFADGSL 146 (267)
T ss_pred CcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHhcCCC
Confidence 35666777888999888888776 77777643 3445555544432211 122222 33332 5667654
Q ss_pred CccChHHHHHHHHHcCCCCCchHHHHHHHhhcccc------cc--ccc-HHHHHHHhHHcCCC---CHHHHHHHHHHHHH
Q 026176 72 DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAAT------MC--EFS-KQEFIGGLQSLGID---SLDKFRERISFMRA 139 (242)
Q Consensus 72 d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~------~g--~~t-r~eF~~g~~~l~~d---si~~lk~~l~~l~~ 139 (242)
+.-..+=+.+.|+-|||++.|..-+...+.-...- -+ ..+ +....+-.+-||++ |.+.+|+.-.+|..
T Consensus 147 ~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~ 226 (267)
T PRK09430 147 HPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMS 226 (267)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55556667889999999999988877765431000 00 111 23344455566664 67888888887776
Q ss_pred Hcc
Q 026176 140 ELK 142 (242)
Q Consensus 140 ~l~ 142 (242)
+..
T Consensus 227 ~~H 229 (267)
T PRK09430 227 EHH 229 (267)
T ss_pred HhC
Confidence 653
No 77
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=49.83 E-value=22 Score=32.98 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 9 RDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
-+.|++..+.||+.--.+++.|..++.|+|.|++--=.+
T Consensus 6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~k 44 (296)
T COG0264 6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREK 44 (296)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 467999999999999999999999999999999865444
No 78
>PRK10945 gene expression modulator; Provisional
Probab=48.09 E-value=38 Score=24.94 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=31.9
Q ss_pred ccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccchHHHHHHHH
Q 026176 110 FSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYN 152 (242)
Q Consensus 110 ~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~ 152 (242)
.|+.+|+--+++ |.|.+.|-..+..++..|.+ .++..||.
T Consensus 6 Mtk~dyL~~fRr--css~eTLEkvie~~~~~L~~-~E~~~f~~ 45 (72)
T PRK10945 6 LTKTDYLMRLRR--CQTIDTLERVIEKNKYELSD-DELAVFYS 45 (72)
T ss_pred ccHHHHHHHHHh--cCcHHHHHHHHHHhhccCCH-HHHHHHHH
Confidence 388999876665 99999999999999999986 45555554
No 79
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=47.15 E-value=30 Score=31.93 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccc
Q 026176 10 DKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQ 47 (242)
Q Consensus 10 ~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~ 47 (242)
-+++-.+++||++.++|.++|++++.++-.||=....+
T Consensus 235 Ra~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 235 RAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 34778899999999999999999999999998877654
No 80
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=47.06 E-value=11 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchH
Q 026176 54 TDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIV 94 (242)
Q Consensus 54 ~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~ 94 (242)
.+++.+.+++..- ...+..+-+.++|+-||++|+++.
T Consensus 22 is~~tl~~~~~~~----~~~~~~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 22 ISRSTLSRILNGK----PSNPSLDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp --HHHHHHHHTTT---------HHHHHHHHHHHT--HHHCT
T ss_pred cCHHHHHHHHhcc----cccccHHHHHHHHHHcCCCHHHHh
Confidence 3455666666522 246889999999999999998753
No 81
>KOG4380 consensus Carnitine deficiency associated protein [General function prediction only]
Probab=46.85 E-value=52 Score=28.89 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=42.2
Q ss_pred hhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCC-C----Cc---cChHHHHHHHHHcCCC
Q 026176 18 ITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPY-L----DM---ILVDGITLLCNDLQVD 89 (242)
Q Consensus 18 ~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~-~----d~---I~~dG~~~~~~DLgv~ 89 (242)
+.|+|...|+.|| |+.|+..-|.+...+..--...-++.-+.-.+.. | |. ==.+|.+.+|.-|||+
T Consensus 71 ~~~~~R~~AID~~------L~~AV~~~Y~~~~~~~~~~~~~~~K~~~~~~~~~~PL~~LD~~~P~F~~~~~AL~~iL~I~ 144 (244)
T KOG4380|consen 71 FKIQDRQEAIDWL------LGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMALANLLQIQ 144 (244)
T ss_pred cccccHHHHHHHH------HHHHHHHHHHhcccchhhhhhhhHHHHHhhhcccCchhhcCCCCccHHHHHHHHHHHhccc
Confidence 4677888888765 7899999997754321111122222222222211 1 11 1157999999999999
Q ss_pred C-CchHHH
Q 026176 90 P-QDIVML 96 (242)
Q Consensus 90 ~-ed~~~L 96 (242)
- .|+.++
T Consensus 145 ~H~D~~Vm 152 (244)
T KOG4380|consen 145 RHDDYLVM 152 (244)
T ss_pred cCCCHHHH
Confidence 6 555444
No 82
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=46.84 E-value=46 Score=28.51 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHhhhCCCHHHHHHHHHhCCC-Cchhhhhhhcccc---CCCCcCCHHHHHHHHHHhcCCCCC--------
Q 026176 5 SRSNRDKLQQFVSITGASEKAALQALKASDW-HLEGAFDVFYSQP---QSKSLTDTRHLEELYNRYKDPYLD-------- 72 (242)
Q Consensus 5 ~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w-~le~A~~~ff~~~---~~~~~~~~~~l~~lFd~Y~d~~~d-------- 72 (242)
+...++....+..+-|+-++.|...|+..+- .+..|+.. .++ ..-+...++..+++...+++...+
T Consensus 65 ~~~ek~~f~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~--~d~~~L~~v~Gig~k~A~~I~~~l~~~~~~~~~~~~~~ 142 (192)
T PRK00116 65 TKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIAN--GDVKALTKVPGIGKKTAERIVLELKDKLAAAASAAAAA 142 (192)
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHh--CCHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccc
Confidence 4455666778889999999999999998874 22222322 111 112445677777777777642110
Q ss_pred ---ccChHHHHHHHHHcCCCCCchHHHH
Q 026176 73 ---MILVDGITLLCNDLQVDPQDIVMLV 97 (242)
Q Consensus 73 ---~I~~dG~~~~~~DLgv~~ed~~~Lv 97 (242)
.-..+-++..+..||+++..+...+
T Consensus 143 ~~~~~~~~ev~~aL~~LG~~~~~a~~~~ 170 (192)
T PRK00116 143 AAASSALEEAVSALVALGYKPKEASKAV 170 (192)
T ss_pred ccccchHHHHHHHHHHcCCCHHHHHHHH
Confidence 0013455566666666665544443
No 83
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=46.32 E-value=4.1 Score=37.97 Aligned_cols=69 Identities=26% Similarity=0.457 Sum_probs=45.7
Q ss_pred HHHHH--HhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHH--hcCC--------CCCccChH-HHHHHHHHcCCCCCc
Q 026176 26 ALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDP--------YLDMILVD-GITLLCNDLQVDPQD 92 (242)
Q Consensus 26 A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~--Y~d~--------~~d~I~~d-G~~~~~~DLgv~~ed 92 (242)
|+.+| +.++|.|.. +.||.-.+++..+-..+ +.+|++ |+|. +.|.+-++ =+.+..++.||+|++
T Consensus 86 ~iAcLgSQ~AGW~l~~--~~ffa~GSGPaRAla~k-e~l~~~l~Y~D~~~~avl~lE~~~lP~~~v~e~vA~~cgv~p~~ 162 (317)
T PRK02264 86 ALACLGSQKAGWSLSV--GKFFALGSGPARALALK-EELYEELGYRDDADFAVLVLESDKLPPEEVAEKVAEECGVDPEN 162 (317)
T ss_pred HHHHHhccccCccccc--CCEeeecCcHHHHHhhh-hHHHHHhCCccccCeEEEEEecCCCCCHHHHHHHHHHcCCCHHH
Confidence 44454 679999984 78998776644444444 788885 5554 12334333 455677999999999
Q ss_pred hHHHH
Q 026176 93 IVMLV 97 (242)
Q Consensus 93 ~~~Lv 97 (242)
+..++
T Consensus 163 v~~lv 167 (317)
T PRK02264 163 VYLLV 167 (317)
T ss_pred EEEEE
Confidence 76554
No 84
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.04 E-value=55 Score=33.28 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=45.9
Q ss_pred CcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCC-----CCchHHHHHHHhhc-----ccccccccHHHHHHHhHH
Q 026176 52 SLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVD-----PQDIVMLVVSWHMK-----AATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 52 ~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~-----~ed~~~LvLa~~l~-----a~~~g~~tr~eF~~g~~~ 121 (242)
....+..+..+|.+|.... +.|+.+++.+|+.+-.=. +++..-++.-+.-. ...-+.++.++|..-+..
T Consensus 24 ~~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 24 ESGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cCCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3446789999999998644 699999999999887632 33334444322111 112345899999887644
No 85
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=45.95 E-value=1e+02 Score=26.31 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
+...|.+.|.-..++....|.+.-+-+.+..||=+..|-.+--.-.-..--.-|+++.+||...|++
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 4567777777777666678999999999999999988877665555555556789999999988875
No 86
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=43.71 E-value=79 Score=26.22 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=55.2
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHH-HHHHHHHhcCCCCCccChHHHHH
Q 026176 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRH-LEELYNRYKDPYLDMILVDGITL 81 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~-l~~lFd~Y~d~~~d~I~~dG~~~ 81 (242)
+.+..+.+.+++++.-.|.+++.....++. .-+.+++.+...-.......+.. ++.+=--|+|+.-+.-.-+=+.+
T Consensus 39 ~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---~~~~~L~~~~~~~~~~~~~~~~ll~~~l~vA~ADG~l~~~E~~lL~~ 115 (150)
T cd07311 39 VISPEERDWAIGYAAARGGDADMVEELKEY---TADEDLEEVDFRSPNIKSSRRALLYDAIQVCAADGELSPGEVAAVRK 115 (150)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---CccccHHHHHHHHHhcchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356677788888888778998887777777 44555555533211111111222 22222245565445555666778
Q ss_pred HHHHcCCCCCchHHH
Q 026176 82 LCNDLQVDPQDIVML 96 (242)
Q Consensus 82 ~~~DLgv~~ed~~~L 96 (242)
.|+-||+++.++.-+
T Consensus 116 iA~~LGis~~~~~~l 130 (150)
T cd07311 116 AASLLGISEDEVQKL 130 (150)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999998776654
No 87
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=42.12 E-value=4.2 Score=28.89 Aligned_cols=59 Identities=10% Similarity=0.232 Sum_probs=32.1
Q ss_pred ccChHHHHHHHHHcCCCCCchHHHHHHHhh--cccccccccHHHHHHHhHHcCCCCHHHHHHHH
Q 026176 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHM--KAATMCEFSKQEFIGGLQSLGIDSLDKFRERI 134 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l 134 (242)
....+=+.+++++.|++|+ ++..++-+-+ +..++.. =+.-++.|.+-|+.|+++..++.
T Consensus 15 ~~e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Y--i~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 15 PSEIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNY--IEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHH--HHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCCCHHHHHHHh
Confidence 4556667777776666665 5555555544 2333222 23667789999998887655443
No 88
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=41.74 E-value=68 Score=21.28 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=23.4
Q ss_pred cccccccccHHHHHHHhHHcCCCCHHHHHHHHHH
Q 026176 103 KAATMCEFSKQEFIGGLQSLGIDSLDKFRERISF 136 (242)
Q Consensus 103 ~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~ 136 (242)
....-|.|+.+|+...+.++|. +.+.++..+..
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~ 41 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQIWDL 41 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 4455689999999999998886 54455444443
No 89
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=40.95 E-value=2.1e+02 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCchHHHHHHHhh-----cccccc-cccHHHHHHHhHHcC
Q 026176 89 DPQDIVMLVVSWHM-----KAATMC-EFSKQEFIGGLQSLG 123 (242)
Q Consensus 89 ~~ed~~~LvLa~~l-----~a~~~g-~~tr~eF~~g~~~l~ 123 (242)
+++.+-+|+-|-+| +-+.+. .+|+++|++..+...
T Consensus 123 ~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~~~~ 163 (185)
T cd00171 123 SADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLRGIN 163 (185)
T ss_pred ChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHhccc
Confidence 66666666666554 555543 899999999887754
No 90
>PLN02964 phosphatidylserine decarboxylase
Probab=40.72 E-value=2e+02 Score=29.54 Aligned_cols=64 Identities=5% Similarity=-0.212 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 59 LEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 59 l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
+.++|..+-.+.++.|+.+=...++..+|-.+.+-.+.-+-..+.-..-|.|+.+|+.+.|+..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 7899998844444689999999999999854443344444455666667999999999999883
No 91
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=40.36 E-value=1.7e+02 Score=23.17 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhH
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQ 120 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~ 120 (242)
...+|.-.|.++=......|+.+=+..++ +.+....+--+...+.+..=|.||.+||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45778889999943333489998888776 445444444556666788889999999999883
No 92
>PLN02223 phosphoinositide phospholipase C
Probab=40.18 E-value=65 Score=32.36 Aligned_cols=69 Identities=6% Similarity=-0.070 Sum_probs=45.0
Q ss_pred CcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHc-------CCCCCchHHHHHHHhh------cccccccccHHHHHHH
Q 026176 52 SLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDL-------QVDPQDIVMLVVSWHM------KAATMCEFSKQEFIGG 118 (242)
Q Consensus 52 ~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DL-------gv~~ed~~~LvLa~~l------~a~~~g~~tr~eF~~g 118 (242)
....+..+.++|++|.+ +.+.|+.+++.+|+.=| +...++...++=...- +...-+.++.++|..-
T Consensus 11 ~~~~p~~v~~~f~~~~~-~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 11 PANQPDLILNFFGNEFH-GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCCCcHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 34467899999999974 34689999999999333 5556665555443221 1122245777888777
Q ss_pred hHH
Q 026176 119 LQS 121 (242)
Q Consensus 119 ~~~ 121 (242)
+..
T Consensus 90 L~s 92 (537)
T PLN02223 90 LFS 92 (537)
T ss_pred hcC
Confidence 644
No 93
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=38.06 E-value=22 Score=28.59 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=23.6
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhcccc
Q 026176 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQP 48 (242)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~ 48 (242)
+..+.++.|.+++.+.++.++.||.++.+...|--+|
T Consensus 100 ~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~ 136 (143)
T PF10075_consen 100 LSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNP 136 (143)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---H
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCC
Confidence 5677889999999999999999999998777665443
No 94
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=36.74 E-value=83 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCC-Cchhhhhh
Q 026176 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDW-HLEGAFDV 43 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w-~le~A~~~ 43 (242)
.++..+++.-..++++.|+-++.|..+|...+- ++..||.+
T Consensus 62 F~~~~Er~lF~~L~~V~GIGpK~Al~iL~~~~~~el~~aI~~ 103 (191)
T TIGR00084 62 FNTLEERELFKELIKVNGVGPKLALAILSNMSPEEFVYAIET 103 (191)
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHh
Confidence 467788898999999999999999999998665 66666653
No 95
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=36.72 E-value=5.7 Score=36.95 Aligned_cols=71 Identities=17% Similarity=0.405 Sum_probs=44.0
Q ss_pred HHHHHH--HhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHH--hcCC--------CCCccCh-HHHHHHHHHcCCCCC
Q 026176 25 AALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDP--------YLDMILV-DGITLLCNDLQVDPQ 91 (242)
Q Consensus 25 ~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~--Y~d~--------~~d~I~~-dG~~~~~~DLgv~~e 91 (242)
-|+.+| +.++|.|. .+.||.-.+++.++-..+=+++|++ |+|. +.|.+-+ +=+.+..++.||+|+
T Consensus 83 P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRAla~kpe~ly~~l~Y~d~~~~avl~lE~~~lP~~~v~~~vA~~cgv~p~ 160 (312)
T TIGR03120 83 PVIACLGSQKAGWQVK--VGKYFAMGSGPARALALKPKETYEEIGYEDDSDVAVIVLESDKLPDEEVAEYIADECGVDPE 160 (312)
T ss_pred HHHHHhhccccCcccc--cCCEeEecCchHHHhhcCcHHHHHHhCCcccCceEEEEEecCCCCCHHHHHHHHHHcCCCHH
Confidence 344555 66999998 7889977655332221111577776 4443 1233333 445667799999999
Q ss_pred chHHHH
Q 026176 92 DIVMLV 97 (242)
Q Consensus 92 d~~~Lv 97 (242)
++..++
T Consensus 161 ~l~~lv 166 (312)
T TIGR03120 161 NLTLLV 166 (312)
T ss_pred HEEEEE
Confidence 976654
No 96
>PRK03980 flap endonuclease-1; Provisional
Probab=36.54 E-value=66 Score=29.53 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=51.1
Q ss_pred HHHHHHHhhhCC---------CHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCC--------C
Q 026176 10 DKLQQFVSITGA---------SEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYL--------D 72 (242)
Q Consensus 10 ~~i~~F~~~T~~---------s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~--------d 72 (242)
+.+-.|+-++|| -+++|.+++++++ ++|..++..-.+ ..+-..+.++| ..|+- .
T Consensus 177 ~q~id~~iL~G~Dy~~GI~GIG~ktA~kLi~~~~-sle~i~~~~~~~-----~~~~~~~r~~f---~~p~v~~~~~~~~~ 247 (292)
T PRK03980 177 EQLIDIAILVGTDYNPGIKGIGPKTALKLIKKHG-DLEKVLEERGFE-----IENYDEIREFF---LNPPVTDDYELKWK 247 (292)
T ss_pred HHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHCC-CHHHHHHhccCC-----CCCHHHHHHHh---cCCCCCCCCCccCC
Confidence 446677777776 4899999999999 888888743111 11224444444 44421 2
Q ss_pred ccChHHHHHHH-HHcCCCCCchH
Q 026176 73 MILVDGITLLC-NDLQVDPQDIV 94 (242)
Q Consensus 73 ~I~~dG~~~~~-~DLgv~~ed~~ 94 (242)
..+.||+.+|+ +..|.+++-+.
T Consensus 248 ~pd~~~l~~fl~~e~~f~~~rv~ 270 (292)
T PRK03980 248 EPDKEGIIEFLVEEHDFSEERVK 270 (292)
T ss_pred CCCHHHHHHHHhccCCCCHHHHH
Confidence 68899999965 89999987544
No 97
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=34.79 E-value=34 Score=24.76 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHH
Q 026176 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVM 95 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~ 95 (242)
+-|-.+|-.|--+.++.|...+++++++.+||++..+.+
T Consensus 4 Sli~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 4 SLIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHH
T ss_pred eehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHH
Confidence 456678888887777789999999999999999876554
No 98
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=34.53 E-value=6.3 Score=36.69 Aligned_cols=71 Identities=21% Similarity=0.414 Sum_probs=43.9
Q ss_pred HHHHHH--HhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHH--hcCC--------CCCccC-hHHHHHHHHHcCCCCC
Q 026176 25 AALQAL--KASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNR--YKDP--------YLDMIL-VDGITLLCNDLQVDPQ 91 (242)
Q Consensus 25 ~A~~~L--~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~--Y~d~--------~~d~I~-~dG~~~~~~DLgv~~e 91 (242)
-|+.+| +.++|.|. .+.||.-.+++.++-..+=+++|++ |+|. +.|.+- .+=+.+..++.||+|+
T Consensus 83 P~iAcLgSQ~AGW~l~--~~~ffamGSGPaRAla~kpe~ly~~l~Y~D~~~~avl~lE~~~lP~~~v~~~vA~~cgv~p~ 160 (312)
T cd00545 83 PVIACLGSQYAGWSLS--VGDFFALGSGPARALALKPEELYEEIGYRDDAEVAVLVLESDKLPPEEVAEKVAAECGVDPE 160 (312)
T ss_pred HHHHHhcccccCcccc--cCCEeEecCchHHHhhcCcHHHHHHhCCccccceEEEEEecCCCCCHHHHHHHHHHcCCCHH
Confidence 345555 66999998 7889977655332221122577776 4443 123333 3445667799999999
Q ss_pred chHHHH
Q 026176 92 DIVMLV 97 (242)
Q Consensus 92 d~~~Lv 97 (242)
++..++
T Consensus 161 ~l~~lv 166 (312)
T cd00545 161 NVTLIV 166 (312)
T ss_pred HEEEEE
Confidence 976654
No 99
>PRK13749 transcriptional regulator MerD; Provisional
Probab=34.16 E-value=2.4e+02 Score=22.50 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=41.0
Q ss_pred HHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCC
Q 026176 11 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP 90 (242)
Q Consensus 11 ~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ 90 (242)
.|.++...||+|..+=+.|=+ .| =|..+ -.++++...-+.. .+.-=..++.|.++|+++
T Consensus 5 tIgelA~~~gvS~~tiR~YE~-~G-Ll~p~----~r~~~gyR~Y~~~---------------~l~rL~~I~~~r~~G~sL 63 (121)
T PRK13749 5 TVSRLALDAGVSVHIVRDYLL-RG-LLRPV----ACTTGGYGLFDDA---------------ALQRLCFVRAAFEAGIGL 63 (121)
T ss_pred cHHHHHHHHCCCHHHHHHHHH-CC-CCCCC----CcCCCCCccCCHH---------------HHHHHHHHHHHHHcCCCH
Confidence 388999999999887665543 33 11110 0011111111112 233336778899999999
Q ss_pred CchHHHHHHHh
Q 026176 91 QDIVMLVVSWH 101 (242)
Q Consensus 91 ed~~~LvLa~~ 101 (242)
+++.-|+-++-
T Consensus 64 ~eI~~ll~l~~ 74 (121)
T PRK13749 64 DALARLCRALD 74 (121)
T ss_pred HHHHHHHhhhc
Confidence 99988877653
No 100
>PHA01083 hypothetical protein
Probab=33.56 E-value=56 Score=27.39 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=38.5
Q ss_pred ccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHc
Q 026176 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL 122 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l 122 (242)
.|+.+-+.++++-+|+||+.+...+.+.+-+.|.. |.-|.+..+++
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 58888999999999999999999999998887764 56677777664
No 101
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=31.85 E-value=33 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.6
Q ss_pred hhhCCCHHHHHHHHHhCCCCchh
Q 026176 17 SITGASEKAALQALKASDWHLEG 39 (242)
Q Consensus 17 ~~T~~s~~~A~~~L~~~~w~le~ 39 (242)
+++|-+...|...|++++|.++.
T Consensus 5 d~~g~~~~~a~~~l~~~g~~~~~ 27 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAAGLTVNV 27 (63)
T ss_dssp TTTTSBHHHHHHHHHHTT-EEEE
T ss_pred CcCCCcHHHHHHHHHHCCCEEEE
Confidence 57899999999999999995443
No 102
>PLN02228 Phosphoinositide phospholipase C
Probab=31.48 E-value=1.6e+02 Score=29.74 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=45.6
Q ss_pred CcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCC-Cch-HHHHHHHhhccc----ccccccHHHHHHHhHH
Q 026176 52 SLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP-QDI-VMLVVSWHMKAA----TMCEFSKQEFIGGLQS 121 (242)
Q Consensus 52 ~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~-ed~-~~LvLa~~l~a~----~~g~~tr~eF~~g~~~ 121 (242)
....+..|..+|.+|... +.|+.+++.+|+.+..=+. .+. .+.-|-..++.. .-|.++.++|..-+..
T Consensus 19 ~~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 19 TREPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 445789999999999864 4799999999998775332 111 122233333321 2367999999888754
No 103
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=31.46 E-value=74 Score=28.02 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=37.9
Q ss_pred hhhhhhcc-ccCCCCcCCHHHHHHHHHHhcCCCCCcc-ChHHHHHHHHHcCCCCCchHHH
Q 026176 39 GAFDVFYS-QPQSKSLTDTRHLEELYNRYKDPYLDMI-LVDGITLLCNDLQVDPQDIVML 96 (242)
Q Consensus 39 ~A~~~ff~-~~~~~~~~~~~~l~~lFd~Y~d~~~d~I-~~dG~~~~~~DLgv~~ed~~~L 96 (242)
.|+|+|.. +++.-....+.++++.|.+---.++.++ +.+|+.+||++-=-+-.+..-|
T Consensus 65 ~~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s~f~~l 124 (205)
T PF12238_consen 65 SHMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSESPFMKL 124 (205)
T ss_pred HHHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhccccHHHHH
Confidence 45666765 3332234577899999988665445566 9999999999974444433333
No 104
>PLN02222 phosphoinositide phospholipase C 2
Probab=31.06 E-value=1.1e+02 Score=30.97 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCC----CchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDP----QDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~----ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
-+..|..+|.+|.+ .+.|+.+++.+|+.+-.=++ ++...++=.+ -....-+.++.++|..-+..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 55799999999986 35899999999998765443 3333332222 11223456888999888754
No 105
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=30.97 E-value=1.8e+02 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=26.8
Q ss_pred cHHHHHHHhHHcCCCCHHHHHHHHHHHHHHc
Q 026176 111 SKQEFIGGLQSLGIDSLDKFRERISFMRAEL 141 (242)
Q Consensus 111 tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l 141 (242)
.|.+|+.++.+-|+.|+++++.-+...+..-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4889999999999999999999888887753
No 106
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=30.50 E-value=2.4e+02 Score=21.39 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=49.8
Q ss_pred ccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHHH
Q 026176 73 MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISF 136 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~ 136 (242)
.|..+-+.+||+.-||+......-.++..|.....-.|..++=.+-++++.--|=++.-+.+.+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~ 77 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNE 77 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5889999999999999999999999999999999999988887777776543333333333333
No 107
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=29.30 E-value=1.1e+02 Score=21.07 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhc
Q 026176 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFY 45 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff 45 (242)
.++..+.-.|+-++.-.|+|++..+...++.| +--.+|..|.
T Consensus 14 ~I~~~e~~ev~ywa~~~gvt~~~L~~AV~~vG-~~~~~V~~~L 55 (57)
T PF12244_consen 14 RIDLSEPYEVRYWAKRFGVTEEQLREAVRAVG-NSRAAVRAYL 55 (57)
T ss_pred hcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHC-cCHHHHHHHH
Confidence 35556777899999999999999999999999 5566666654
No 108
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=29.11 E-value=28 Score=33.05 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCchHHHHHHHhhcccccccccHHHH
Q 026176 80 TLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEF 115 (242)
Q Consensus 80 ~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF 115 (242)
..+|.++|+|.-+... +|||.+.+-.-|.|++++.
T Consensus 117 ~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 117 NDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 4589999999866664 8999999999999999887
No 109
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=29.08 E-value=1.3e+02 Score=20.61 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=36.8
Q ss_pred CchHHHHHHHhhcccccccccHHHHHHH-hHHcC-CCCHHHHHHHHHHHHHHccc
Q 026176 91 QDIVMLVVSWHMKAATMCEFSKQEFIGG-LQSLG-IDSLDKFRERISFMRAELKD 143 (242)
Q Consensus 91 ed~~~LvLa~~l~a~~~g~~tr~eF~~g-~~~l~-~dsi~~lk~~l~~l~~~l~~ 143 (242)
..-..-+|++++..+.. .+|+++..+- |..-. ..+...++..|..||+.|.+
T Consensus 7 t~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 7 TPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred CHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 33445577888877554 8999999986 43322 34567799999999998854
No 110
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.68 E-value=1.2e+02 Score=23.52 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCC---CchHHHHHHHhhcccccccccHHHHHHHhHHc-CC----CCHHHHHHHHHHHHHHccchHHH
Q 026176 78 GITLLCNDLQVDP---QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL-GI----DSLDKFRERISFMRAELKDEQKF 147 (242)
Q Consensus 78 G~~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l-~~----dsi~~lk~~l~~l~~~l~~~~~F 147 (242)
-+++|..+ .++| +.+..||.+-. -|.|+-|||...+++. +- .=++=||+.||.|++++.+...|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~-----~~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLV-----DGKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHH-----TTSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 35677777 5555 34555665433 3588999999999873 32 23678999999999999876655
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=28.65 E-value=1.7e+02 Score=29.90 Aligned_cols=68 Identities=7% Similarity=0.018 Sum_probs=44.6
Q ss_pred CcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCC----CCCchHHHHHHHh--hc-cccc--ccccHHHHHHHhH
Q 026176 52 SLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQV----DPQDIVMLVVSWH--MK-AATM--CEFSKQEFIGGLQ 120 (242)
Q Consensus 52 ~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv----~~ed~~~LvLa~~--l~-a~~~--g~~tr~eF~~g~~ 120 (242)
....+..|..+|.+|..+. +.|+.+.+.+|+.+-.= ++++..-|+-... -+ .... +.++.++|...+.
T Consensus 33 ~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 33 EAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 4457899999999998643 58999999999987543 3344443322111 01 1111 3478899998885
No 112
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=27.67 E-value=80 Score=20.68 Aligned_cols=28 Identities=11% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHHHhc--CCCCCccChHHHHHHHH
Q 026176 57 RHLEELYNRYK--DPYLDMILVDGITLLCN 84 (242)
Q Consensus 57 ~~l~~lFd~Y~--d~~~d~I~~dG~~~~~~ 84 (242)
..|..+|.+|+ +++.+.+.-+.+.++++
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 45788999998 44567888888888775
No 113
>PF07299 FBP: Fibronectin-binding protein (FBP); InterPro: IPR010841 This entry consists of several bacterial fibronectin-binding proteins which are thought to be involved in virulence in Listeria species [,].; PDB: 4ADO_B 4ADN_B 2YB5_F.
Probab=27.44 E-value=24 Score=31.09 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCCcchHHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhc
Q 026176 3 KLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYK 67 (242)
Q Consensus 3 ~l~~~q~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~ 67 (242)
.++.+|++.+.+++.++ +.+.|.+||+.- +.-+--| +..+.+.|.+||-+=+
T Consensus 47 ~~~~eq~~ll~~i~~i~--~~~~~~~~L~~L----~~yV~pF-------~~~t~~qi~kLF~K~K 98 (208)
T PF07299_consen 47 ELTEEQKELLEQIMDIK--TREEAEKYLEEL----KPYVIPF-------PPITEKQIKKLFPKAK 98 (208)
T ss_dssp TTTHHHCCHHHHHTSTT---HHHHHHHHHHH----HCCB--------------HHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHhccC--CHHHHHHHHHHH----HHHhcCC-------CCCCHHHHHHHhhhhh
Confidence 46788888899999988 899999999853 3322222 3557899999997544
No 114
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=26.92 E-value=45 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=14.1
Q ss_pred CCCCHhhhHHHHHHHH
Q 026176 200 KAISRDTWSQLLEFAR 215 (242)
Q Consensus 200 k~IskD~W~~~l~F~~ 215 (242)
...+.|||+.+++|+.
T Consensus 30 ~vf~~~tW~hi~d~~~ 45 (47)
T PF11772_consen 30 DVFSPDTWQHIIDFFT 45 (47)
T ss_pred HhCCHHHHHHHHHHHc
Confidence 5789999999999974
No 115
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=26.68 E-value=33 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=23.7
Q ss_pred CCCccChHHHHHHHHHcCCCCCchHHHH
Q 026176 70 YLDMILVDGITLLCNDLQVDPQDIVMLV 97 (242)
Q Consensus 70 ~~d~I~~dG~~~~~~DLgv~~ed~~~Lv 97 (242)
..+.|..+-+.++|+.|+..|.|+..++
T Consensus 39 k~k~I~~~tL~~iC~~LeCqpgDiley~ 66 (73)
T COG3655 39 KVKAIRLSTLEKICKALECQPGDILEYV 66 (73)
T ss_pred CcceeeHHHHHHHHHHcCCChhheeEEe
Confidence 3457999999999999999999987553
No 116
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=26.64 E-value=76 Score=25.86 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCch
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDI 93 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~ 93 (242)
..+-++++|+.|-..+.|.-+.+.+.+.++++|++++.+
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~ 140 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADEL 140 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence 456677888887655455556677889999999988643
No 117
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=26.41 E-value=1.5e+02 Score=27.78 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCC----ccChHHHHHHHHHcCCC-----C---
Q 026176 23 EKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLD----MILVDGITLLCNDLQVD-----P--- 90 (242)
Q Consensus 23 ~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d----~I~~dG~~~~~~DLgv~-----~--- 90 (242)
-+.|++.|+..+.++...-..+=.. ..-++...++++.|=+-+.|++.+ .+|-.|..+++.+|..+ |
T Consensus 28 ~~~a~~~L~~~G~~v~~~~~i~~~~-~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld~~~i~~~pKif 106 (313)
T COG1619 28 LKRAIQRLENLGFEVVFGEHILRRD-QYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLDYDLIRNHPKIF 106 (313)
T ss_pred HHHHHHHHHHcCCEEEechhhhhcc-ccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcchHHHhcCCceE
Confidence 3568999999997665544333222 222344567788888888887654 79999999999999973 3
Q ss_pred ---CchHHHHHHHhhcc
Q 026176 91 ---QDIVMLVVSWHMKA 104 (242)
Q Consensus 91 ---ed~~~LvLa~~l~a 104 (242)
+|+.+|.+|-.-+.
T Consensus 107 iGySDiTall~ai~~k~ 123 (313)
T COG1619 107 IGYSDITALLLAILAKT 123 (313)
T ss_pred EEecHHHHHHHHHHHhc
Confidence 68888877765544
No 118
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=25.12 E-value=2.1e+02 Score=22.63 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCCCchHH-HHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHH-HHHHHHHc
Q 026176 77 DGITLLCNDLQVDPQDIVM-LVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRER-ISFMRAEL 141 (242)
Q Consensus 77 dG~~~~~~DLgv~~ed~~~-LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~-l~~l~~~l 141 (242)
.|=.++.+.+|+++..+.- -.+|.++..+.+|. .|..-+.+-|++|+++|... -.+|.+.+
T Consensus 30 ~~r~~La~~~~i~~~~l~~w~~~AdL~ri~gi~~----~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l 92 (122)
T PF14229_consen 30 LGRKALAKKLGISERNLLKWVNQADLMRIPGIGP----QYAELLEHAGVDTVEELAQRNPQNLHQKL 92 (122)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHhhhcCCCCH----HHHHHHHHhCcCcHHHHHhCCHHHHHHHH
Confidence 3444599999999987544 45777777777765 78888899999999988754 24444444
No 119
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=25.07 E-value=1.7e+02 Score=26.08 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=34.4
Q ss_pred HHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCC
Q 026176 147 FREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAIS 203 (242)
Q Consensus 147 Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~Is 203 (242)
.|+.|+-.| .+.++++.|++.-+-.+++. |.+...++|+++. +|+|-
T Consensus 208 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~s-~rg~~ 254 (255)
T PRK12461 208 LKRAYKIIY-------RSGLSVQQAVAELELQQFES--PEVEELIDFIKAS-KRGIV 254 (255)
T ss_pred HHHHHHHHH-------hcCCCHHHHHHHHHHhccCC--HHHHHHHHHHHcc-CCCCC
Confidence 666666666 36678889988877766654 8899999999654 56664
No 120
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=25.04 E-value=62 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCC-ccChHHHHHHHHHcCCCCCchH
Q 026176 59 LEELYNRYKDPYLD-MILVDGITLLCNDLQVDPQDIV 94 (242)
Q Consensus 59 l~~lFd~Y~d~~~d-~I~~dG~~~~~~DLgv~~ed~~ 94 (242)
|-=||+.|.+++.+ ..+.+-+.+.+.+.|.+.+++.
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcCCCHHHHH
Confidence 44589999998544 6789999999999999998875
No 121
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.92 E-value=63 Score=22.89 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=11.9
Q ss_pred CCCCCcchHHH---HHHHHhhhCCCHH
Q 026176 1 MHKLSRSNRDK---LQQFVSITGASEK 24 (242)
Q Consensus 1 m~~l~~~q~~~---i~~F~~~T~~s~~ 24 (242)
|..||+.|++. |.+|+.-+|.+|.
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt 27 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPT 27 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCC
Confidence 77788888776 5677777777764
No 122
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=24.70 E-value=51 Score=23.96 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=14.1
Q ss_pred cccccHHHHHHHhHHc
Q 026176 107 MCEFSKQEFIGGLQSL 122 (242)
Q Consensus 107 ~g~~tr~eF~~g~~~l 122 (242)
-++|||++|++-++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 5799999999999885
No 123
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=24.51 E-value=70 Score=23.81 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=24.4
Q ss_pred CCCcch-HHHHHHHHhhhCCCHHHHHHHHHhCCCCchhhh
Q 026176 3 KLSRSN-RDKLQQFVSITGASEKAALQALKASDWHLEGAF 41 (242)
Q Consensus 3 ~l~~~q-~~~i~~F~~~T~~s~~~A~~~L~~~~w~le~A~ 41 (242)
++++.| -+.+.++..+...+++.|+++|.++. .|-.|+
T Consensus 25 ~l~~~ql~ell~~mK~l~~~~p~~ar~lL~~nP-qLa~Al 63 (84)
T PF14327_consen 25 SLPPEQLYELLSQMKQLAQQNPEQARQLLQQNP-QLAYAL 63 (84)
T ss_dssp TSHHHHHHHHHHHHHHHHC----HHHHHHHS-T-HHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc-HHHHHH
Confidence 344443 46689999999999999999999987 555554
No 124
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=24.10 E-value=66 Score=26.52 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=47.0
Q ss_pred cCCCCCchHHHHHHHhhcccccc-cccHHHHHH-HhHHcCCCCHHHHHHHHHHHHHHccchH---H-HHHHHHHHhHhh
Q 026176 86 LQVDPQDIVMLVVSWHMKAATMC-EFSKQEFIG-GLQSLGIDSLDKFRERISFMRAELKDEQ---K-FREIYNFAFAWA 158 (242)
Q Consensus 86 Lgv~~ed~~~LvLa~~l~a~~~g-~~tr~eF~~-g~~~l~~dsi~~lk~~l~~l~~~l~~~~---~-Fk~~Y~f~F~f~ 158 (242)
--|..+-.+.-||..+++ ..| .++|+++++ -|..-.+.-- .|-..|..||+.|.+.. . ++.|++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e--~~geVvsk~eL~~~VW~~~~v~~~-~Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE--RAGEVVSKDELLDAVWPGRIVTVN-TLTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHh--ccCceecHHHHHHHhCCCceEccC-hHHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 344556667778888888 344 899999999 4776554322 28999999999997644 2 455554444443
No 125
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=23.76 E-value=1.7e+02 Score=27.05 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=36.7
Q ss_pred HHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCC---cccHHHHHHHHHhhc
Q 026176 147 FREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQ---WPLVDHWCQFLQAKH 198 (242)
Q Consensus 147 Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~---~~~l~~W~~FL~~~~ 198 (242)
++.+|.=.|.|- +|-=+=+-..|+++|+-||.+++ ..+++.=.+|++.+-
T Consensus 201 ~~qf~gaifaYD--eG~l~dD~vLA~alWRnlF~~r~~~D~~hle~vV~YvR~qv 253 (284)
T KOG2873|consen 201 ERQFYGAIFAYD--EGFLSDDRVLATALWRNLFSGRGNVDLVHLEAVVRYVRSQV 253 (284)
T ss_pred HHHHHHHHHHhc--ccccccchHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHH
Confidence 566666666553 55555555889999999999872 568999999997653
No 126
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=23.74 E-value=2.7e+02 Score=19.92 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=43.8
Q ss_pred cHHHHHHHhHHcCCCCHHHHHHHHHHHHHHccchH-HHHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHH
Q 026176 111 SKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQ-KFREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDH 189 (242)
Q Consensus 111 tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~~~~-~Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~ 189 (242)
.|++|+--+.-.+.-+.+.+...|.+.+......- .++.+.+-.|.- .+.+ +...-+|.+++..+ -.+...
T Consensus 3 ~Rde~LlKlff~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~--~~~~~~~~ltl~~G-i~~~~~ 74 (90)
T PF10400_consen 3 IRDEFLLKLFFGGHLDPEEAIELLEERREQHEERLAEYEEIEQEIFSD-----PDEL--DPEAFYWYLTLEYG-IRYEQA 74 (90)
T ss_dssp ---HHHHHHHGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------GGGS---HHHHHHHHHHHHH-HHHHHH
T ss_pred chhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cccC--CHHHHHHHHHHHHH-HHHHHH
Confidence 57888877777777777777777766666554332 366665444433 2222 34447888888754 445566
Q ss_pred HHHHHHh
Q 026176 190 WCQFLQA 196 (242)
Q Consensus 190 W~~FL~~ 196 (242)
|++++++
T Consensus 75 ~i~W~~~ 81 (90)
T PF10400_consen 75 EIEWCEE 81 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666643
No 127
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.49 E-value=82 Score=28.26 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHcCCC-CCchHHHHHHHhhc
Q 026176 75 LVDGITLLCNDLQVD-PQDIVMLVVSWHMK 103 (242)
Q Consensus 75 ~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~ 103 (242)
=++++.+||+|||.. ...-..-+|-|+++
T Consensus 56 W~~~~~kYl~dl~cP~~~~~~~~~ldWLL~ 85 (249)
T PF10036_consen 56 WPKAFEKYLKDLGCPFSSESRQEQLDWLLG 85 (249)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 378999999999999 46667777777774
No 128
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=23.34 E-value=2.5e+02 Score=19.29 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=33.6
Q ss_pred cChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 74 ILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 74 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
|...-+.+++..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 344567788999999998888888888887777889999988875544
No 129
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=23.24 E-value=67 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCc
Q 026176 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD 92 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed 92 (242)
+-...+|+.+...+.+..+.+.+.++++++|++++.
T Consensus 80 ~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~ 115 (178)
T cd03019 80 KLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKK 115 (178)
T ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHH
Confidence 345668888876555556688999999999997754
No 130
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.03 E-value=3e+02 Score=21.58 Aligned_cols=65 Identities=8% Similarity=-0.016 Sum_probs=38.9
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCC
Q 026176 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (242)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~e 91 (242)
|.+|...+|+|+.+-+.| ++-| =+..+. ..+++...-+...+ .-=.+++.+.++|++++
T Consensus 2 I~e~a~~~gvs~~tlR~Y-e~~G-Ll~~~~----r~~~g~R~Y~~~~l---------------~~l~~I~~l~~~G~sl~ 60 (124)
T TIGR02051 2 IGELAKAAGVNVETIRYY-ERKG-LLPEPD----RPEGGYRRYPEETV---------------KRLRFIKRAQELGFSLE 60 (124)
T ss_pred HHHHHHHHCcCHHHHHHH-HHCC-CCCCCc----cCCCCCEeECHHHH---------------HHHHHHHHHHHCCCCHH
Confidence 789999999999988777 3333 121110 01111111122222 22257788899999999
Q ss_pred chHHHH
Q 026176 92 DIVMLV 97 (242)
Q Consensus 92 d~~~Lv 97 (242)
++.-++
T Consensus 61 eI~~~l 66 (124)
T TIGR02051 61 EIGGLL 66 (124)
T ss_pred HHHHHH
Confidence 988766
No 131
>PHA00680 hypothetical protein
Probab=22.94 E-value=2.9e+02 Score=21.94 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=40.1
Q ss_pred HHHHcC-CCCCchHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHH---HHHHHccchHH-HHHHHHH
Q 026176 82 LCNDLQ-VDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERIS---FMRAELKDEQK-FREIYNF 153 (242)
Q Consensus 82 ~~~DLg-v~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~---~l~~~l~~~~~-Fk~~Y~f 153 (242)
+|+-|. ++..|+..=.||..+.|--+|.-.-...++.+..-..|..+.+|..+. +.+.-+.+-.+ |.++-..
T Consensus 60 lcetldtldahdiepgalaqlcdamligpantaallnalaaadldapeslkaeldlakqfralvedagdvfsrlsel 136 (143)
T PHA00680 60 LCETLDTLDAHDIEPGALAQLCDAMLIGPANTAALLNALAAADLDAPESLKAELDLAKQFRALVEDAGDVFSRLSEL 136 (143)
T ss_pred HHHhhccchhhcCCchHHHHHhHHHhcCcccHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 455443 233444444555555555555555556677777777888888887763 33333344333 6555443
No 132
>PF11527 ARL2_Bind_BART: The ARF-like 2 binding protein BART; InterPro: IPR023379 This domain is found in ADP-ribosylation factor-like 2 (ARF2) binding protein, also known as BART, and in uncharacterised proteins. BART binds specifically to ARF2.GTP with a high affinity. However, it does not bind to ARF2.GDP. It is thought that this specific interaction is due to BART being the first identified ARF2-specific effector. The function is not completely characterised []. BART is predominantly cytosolic but can also be found to be associated with mitochondria. BART is also involved in binding to the adenine nucleotide transporter ANT1 []. ; PDB: 2K0S_A 2K9A_A 3DOF_B 3DOE_B.
Probab=22.83 E-value=46 Score=26.23 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHH
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLV 97 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~Lv 97 (242)
+.-.-.++|.+|++ +=-.=+..+++++|++++.....|
T Consensus 42 nkley~~i~~ey~~-----lvE~~le~~l~~~g~s~e~f~~~~ 79 (121)
T PF11527_consen 42 NKLEYTEIHQEYKE-----LVEKLLEEFLEELGISMEEFEEAC 79 (121)
T ss_dssp CSTTHHHHHHHHHH-----HHHHHHHHHHHSTTSSHHCHHHHH
T ss_pred ccHHHHHHHHHHHH-----HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566789999985 434445678999999999998888
No 133
>PRK06771 hypothetical protein; Provisional
Probab=22.50 E-value=1e+02 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHh
Q 026176 9 RDKLQQFVSITGASEKAALQALKA 32 (242)
Q Consensus 9 ~~~i~~F~~~T~~s~~~A~~~L~~ 32 (242)
-++|+...+.||++-..|.+|..+
T Consensus 69 i~AIK~~Re~tG~~L~eAK~yVD~ 92 (93)
T PRK06771 69 VTAVKRVREAFGFSLLEAKQYVDK 92 (93)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHhc
Confidence 467999999999999999999764
No 134
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=22.24 E-value=1.4e+02 Score=20.49 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=35.1
Q ss_pred HHHHHHHhhcccccccccHHHHHHHhHHcCC-CCHHHHHHHHHHHHHHccc
Q 026176 94 VMLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFRERISFMRAELKD 143 (242)
Q Consensus 94 ~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~-dsi~~lk~~l~~l~~~l~~ 143 (242)
..-+|+.++..+. -.+||++..+.+-.-.. .+-..++.+|..||+.|.+
T Consensus 10 e~~lL~~L~~~~~-~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 10 EFRLLELLLRNPG-RVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHTTT-SEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCC-CCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 3445556665432 28999999986544443 6778999999999999864
No 135
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.86 E-value=1.7e+02 Score=21.59 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCCH
Q 026176 165 SLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAISR 204 (242)
Q Consensus 165 ~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~Isk 204 (242)
.+.++.|++--+-.+++ .|.+...++|+++. +|+|.|
T Consensus 47 ~~~~~~a~~~l~~~~~~--~~~v~~~~~Fi~~S-~RGi~R 83 (83)
T PF13720_consen 47 GLTLEEALEELEEEYPD--SPEVREIVDFIRNS-KRGICR 83 (83)
T ss_dssp SS-HHHHHHHHHHHTTS--CHHHHHHHHHHHHT-SS-B--
T ss_pred CCCHHHHHHHHHHhccC--CHHHHHHHHHHHhC-CCCCcC
Confidence 36888999887776665 49999999999854 467653
No 136
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.67 E-value=74 Score=23.53 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCC
Q 026176 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQ 91 (242)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~e 91 (242)
|.+++.++|+|+.+-+.|-+ .|+ +.. . .++++ . -.|.+ .|.--..-+..+..|+|++++
T Consensus 4 i~e~A~~~gvs~~tLr~ye~-~Gl-i~p-~----r~~~g----~--------R~y~~--~dv~~l~~i~~L~~d~g~~l~ 62 (91)
T cd04766 4 ISVAAELSGMHPQTLRLYER-LGL-LSP-S----RTDGG----T--------RRYSE--RDIERLRRIQRLTQELGVNLA 62 (91)
T ss_pred HHHHHHHHCcCHHHHHHHHH-CCC-cCC-C----cCCCC----C--------eeECH--HHHHHHHHHHHHHHHcCCCHH
Confidence 78899999999999888865 453 211 0 11111 0 01111 233445566677788999998
Q ss_pred chHHHHHHHhhcccccccccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHcc
Q 026176 92 DIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK 142 (242)
Q Consensus 92 d~~~LvLa~~l~a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~ 142 (242)
++..++- -.+-++.|++.+..|++.++
T Consensus 63 ~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 63 GVKRILE------------------------LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 8766653 12346677777777777664
No 137
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=21.59 E-value=56 Score=27.92 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.3
Q ss_pred hHHHHHHHHHcCCCCC
Q 026176 76 VDGITLLCNDLQVDPQ 91 (242)
Q Consensus 76 ~dG~~~~~~DLgv~~e 91 (242)
...+|+-|+||||..|
T Consensus 112 SNALmRCCKDLGIaSE 127 (171)
T PF06420_consen 112 SNALMRCCKDLGIASE 127 (171)
T ss_pred HHHHHHHHHHcCcchh
Confidence 3458999999999875
No 138
>PF01671 ASFV_360: African swine fever virus multigene family 360 protein; InterPro: IPR002595 The multigene family 360 protein are found within the African swine fever virus (ASFV) genome which consist of dsDNA and has similar structural features to the poxviruses []. The biological function of this family is not known [], although Q65137 from SWISSPROT is a major structural protein [].; GO: 0042330 taxis
Probab=21.48 E-value=2e+02 Score=25.55 Aligned_cols=98 Identities=22% Similarity=0.383 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCC--CchHHHHHHHhhcccc-cc-------cccHHHHHHHhHHcCCCCHHHHHHHHHHHHHHc-----c
Q 026176 78 GITLLCNDLQVDP--QDIVMLVVSWHMKAAT-MC-------EFSKQEFIGGLQSLGIDSLDKFRERISFMRAEL-----K 142 (242)
Q Consensus 78 G~~~~~~DLgv~~--ed~~~LvLa~~l~a~~-~g-------~~tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l-----~ 142 (242)
.+..||..||-.| ++..++-+-.++.-.. .+ -|+-..+++. -...++|..+-.--..+ .
T Consensus 2 ~tr~LC~~LGAk~~l~~~~il~iF~~~~~~kts~nIILcheif~nNp~l~~------v~~~~l~~~I~~~l~~l~~~~~l 75 (215)
T PF01671_consen 2 HTRDLCRELGAKEPLNEMEILQIFFKIKRNKTSSNIILCHEIFSNNPLLEN------VNNHDLRMIIYWELRRLSINEIL 75 (215)
T ss_pred hHHHHHHHhCCCccccHHHHHHHHHHHHhcCCccceeeehHhhcCChHHhh------hhHHHHHHHHHHHHccchHHHHh
Confidence 4667899999886 7788877777553222 11 1222222221 12235665543222222 3
Q ss_pred chHHH-HHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHH
Q 026176 143 DEQKF-REIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWC 191 (242)
Q Consensus 143 ~~~~F-k~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~ 191 (242)
++..| .-+-+|-|.+|.+- .+-.||.| |-.+ ||+++.|-
T Consensus 76 ~~~s~~~~LtkyWY~~Av~y-----nL~~AI~Y----fyq~-y~hl~~WR 115 (215)
T PF01671_consen 76 DEISFNEMLTKYWYAIAVQY-----NLKEAIQY----FYQK-YPHLNDWR 115 (215)
T ss_pred ccchHHHHHHHHHHHHHHHh-----hhHHHHHH----HHHh-ccchhhHH
Confidence 33345 36677888888654 35578888 5556 88888884
No 139
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=21.26 E-value=3.2e+02 Score=22.94 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=41.7
Q ss_pred ccChHHHHHHHHHcCCCCCchHHH--HHHHhhcccccccccHHHHHHHhHHcCCCC
Q 026176 73 MILVDGITLLCNDLQVDPQDIVML--VVSWHMKAATMCEFSKQEFIGGLQSLGIDS 126 (242)
Q Consensus 73 ~I~~dG~~~~~~DLgv~~ed~~~L--vLa~~l~a~~~g~~tr~eF~~g~~~l~~ds 126 (242)
.++.+-+.++..|.|++..|+... +|.+++....---++.+.|.+-+..+|.+.
T Consensus 21 ~~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~ 76 (174)
T cd04752 21 GIDYEKVLKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPK 76 (174)
T ss_pred cCCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 488999999999999999887644 466667433333589999999999888753
No 140
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=21.12 E-value=1.4e+02 Score=26.95 Aligned_cols=83 Identities=19% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCCchhhhhhhccccCCCCcCCHHHHHHHHHHhcCCCCC----ccChHHHHHHHHHcCCCC--------
Q 026176 23 EKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLD----MILVDGITLLCNDLQVDP-------- 90 (242)
Q Consensus 23 ~~~A~~~L~~~~w~le~A~~~ff~~~~~~~~~~~~~l~~lFd~Y~d~~~d----~I~~dG~~~~~~DLgv~~-------- 90 (242)
-+.|++.|++.++++...=+.+-... .-+.....+.++|=+-++||+-+ .+|-.|..++++.|..+.
T Consensus 16 ~~~~~~~L~~~G~~v~~~~~~~~~~~-~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~rlL~~ld~~~~~~~pK~~ 94 (282)
T cd07025 16 LERAIARLESLGLEVVVGPHVLARDG-YLAGTDEERAADLNAAFADPEIKAIWCARGGYGANRLLPYLDYDLIRANPKIF 94 (282)
T ss_pred HHHHHHHHHhCCCEEEeccchhhhcC-ccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHHhhhhCCHHHHhhCCeEE
Confidence 36789999999888777665554333 12455678888888888998765 689999999999987762
Q ss_pred ---CchHHHHHHH--hhcccc
Q 026176 91 ---QDIVMLVVSW--HMKAAT 106 (242)
Q Consensus 91 ---ed~~~LvLa~--~l~a~~ 106 (242)
+|+..|-++- +.|..+
T Consensus 95 iGySDiTaL~~~l~~~~g~~t 115 (282)
T cd07025 95 VGYSDITALHLALYAKTGLVT 115 (282)
T ss_pred EEecHHHHHHHHHHHhcCceE
Confidence 5777777653 225454
No 141
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=20.54 E-value=86 Score=24.94 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=23.0
Q ss_pred cChHHHHHHHHHcCCCCCchHHHHHHHhhc-ccccccccHHHHHHHhHHcCCCCHHHHHHHH
Q 026176 74 ILVDGITLLCNDLQVDPQDIVMLVVSWHMK-AATMCEFSKQEFIGGLQSLGIDSLDKFRERI 134 (242)
Q Consensus 74 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~-a~~~g~~tr~eF~~g~~~l~~dsi~~lk~~l 134 (242)
|.-.=+.+.++++||.+.|-.+=-.-.... ...-|.++++.|.+.++..|.+ .+.++..|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 444445667889999986655443323221 1123889999999999988874 45555444
No 142
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.36 E-value=1.2e+02 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHHHHhhhCCCHHHHHHHHHhCCCCchhhhhhh
Q 026176 12 LQQFVSITGASEKAALQALKASDWHLEGAFDVF 44 (242)
Q Consensus 12 i~~F~~~T~~s~~~A~~~L~~~~w~le~A~~~f 44 (242)
+..|..+.|.+++.|..+.-.++|..+.|...-
T Consensus 135 ~~D~A~FlGl~~ddAtk~ilEnGWqaDaasqMa 167 (197)
T KOG4414|consen 135 ADDFAAFLGLPEDDATKGILENGWQADAASQMA 167 (197)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcccchhhHHHHh
Confidence 568999999999999999999999999876543
No 143
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.18 E-value=1.1e+02 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCc
Q 026176 55 DTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQD 92 (242)
Q Consensus 55 ~~~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed 92 (242)
...-++.+|..|-..+.|.-+.+.+..+++.+|++++.
T Consensus 110 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~ 147 (201)
T cd03024 110 QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAE 147 (201)
T ss_pred HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHH
Confidence 45677888888765545555677899999999998863
No 144
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=20.10 E-value=2e+02 Score=25.65 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=34.2
Q ss_pred HHHHHHHHhHhhhhcCcccccHHHHHHHHHHhcCCCCcccHHHHHHHHHhhcCCCCCH
Q 026176 147 FREIYNFAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAISR 204 (242)
Q Consensus 147 Fk~~Y~f~F~f~k~~gqk~l~~d~Ai~~W~lll~~~~~~~l~~W~~FL~~~~~k~Isk 204 (242)
.++.|+..| .+..+++.|++-++-.++. .|.+..+++|+++. +|+|.+
T Consensus 212 i~~a~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~-~rg~~~ 259 (262)
T PRK05289 212 LRRAYKLLY-------RSGLTLEEALEELAEEYPD--SPEVKEILDFIESS-KRGIIR 259 (262)
T ss_pred HHHHHHHHH-------HcCccHHHHHHHHHhhccC--CHHHHHHHHHHhcC-CCCCCC
Confidence 455555555 3567778888888876664 48899999999764 577654
No 145
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=20.09 E-value=3.1e+02 Score=24.51 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCCCccChHHHHHHHHHcCCCCCchHHHHHHHhhcccccccccHHHHHHHhHH
Q 026176 57 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQS 121 (242)
Q Consensus 57 ~~l~~lFd~Y~d~~~d~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~~tr~eF~~g~~~ 121 (242)
+.....|.+|-.+....|+..-+-+++|.||..-..+..=-+--.+--..-|.+|--||+-....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 55677899998765569999999999999999888777766666666677788888888876654
Done!