Query 026177
Match_columns 242
No_of_seqs 168 out of 1437
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.2 5E-12 1.1E-16 118.7 3.4 56 154-239 205-265 (348)
2 PF13639 zf-RING_2: Ring finge 98.4 5.9E-08 1.3E-12 64.8 0.6 27 209-235 1-27 (44)
3 COG5540 RING-finger-containing 98.1 1.2E-06 2.6E-11 81.4 1.5 33 206-238 321-358 (374)
4 KOG0801 Predicted E3 ubiquitin 97.7 8.6E-06 1.9E-10 70.1 0.5 30 206-235 175-204 (205)
5 PHA02929 N1R/p28-like protein; 97.5 5.9E-05 1.3E-09 68.1 2.5 53 155-235 149-206 (238)
6 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00022 4.8E-09 53.0 1.9 33 207-239 18-65 (73)
7 cd00162 RING RING-finger (Real 97.1 0.00025 5.4E-09 45.2 1.4 27 210-238 1-27 (45)
8 KOG0802 E3 ubiquitin ligase [P 97.0 0.00016 3.5E-09 71.6 0.4 33 206-238 289-323 (543)
9 smart00184 RING Ring finger. E 96.8 0.00055 1.2E-08 42.0 0.9 25 211-238 1-25 (39)
10 COG5243 HRD1 HRD ubiquitin lig 96.7 0.00055 1.2E-08 65.6 1.2 35 206-240 285-334 (491)
11 PF00097 zf-C3HC4: Zinc finger 96.4 0.0012 2.5E-08 42.9 0.6 25 211-237 1-25 (41)
12 PF13923 zf-C3HC4_2: Zinc fing 96.2 0.0024 5.3E-08 41.5 1.3 25 211-237 1-25 (39)
13 PF14634 zf-RING_5: zinc-RING 96.1 0.0026 5.6E-08 42.6 1.3 29 210-238 1-29 (44)
14 PF13445 zf-RING_UBOX: RING-ty 96.0 0.0032 7E-08 42.7 1.4 25 211-236 1-26 (43)
15 PF13920 zf-C3HC4_3: Zinc fing 94.3 0.02 4.3E-07 39.0 1.1 26 208-236 2-28 (50)
16 PHA02926 zinc finger-like prot 93.7 0.027 5.8E-07 50.9 1.0 32 206-237 168-205 (242)
17 KOG4445 Uncharacterized conser 93.5 0.019 4.2E-07 53.9 -0.2 32 207-238 114-145 (368)
18 PF10367 Vps39_2: Vacuolar sor 93.2 0.06 1.3E-06 41.1 2.2 33 206-239 76-108 (109)
19 KOG0804 Cytoplasmic Zn-finger 92.7 0.054 1.2E-06 53.2 1.4 33 206-238 173-206 (493)
20 KOG1734 Predicted RING-contain 92.2 0.06 1.3E-06 50.0 1.1 30 206-235 222-258 (328)
21 PF15227 zf-C3HC4_4: zinc fing 90.3 0.14 3E-06 34.1 1.1 25 211-238 1-25 (42)
22 smart00744 RINGv The RING-vari 89.9 0.14 3E-06 35.3 0.9 25 210-235 1-30 (49)
23 PF12861 zf-Apc11: Anaphase-pr 86.5 0.29 6.3E-06 38.0 0.8 33 207-239 20-67 (85)
24 PF11793 FANCL_C: FANCL C-term 86.2 0.37 8E-06 35.5 1.2 32 208-239 2-43 (70)
25 KOG0320 Predicted E3 ubiquitin 85.2 0.41 8.8E-06 42.0 1.1 32 206-238 129-160 (187)
26 smart00504 Ubox Modified RING 84.3 0.73 1.6E-05 31.9 1.9 24 209-235 2-25 (63)
27 PF14446 Prok-RING_1: Prokaryo 83.1 0.95 2.1E-05 32.4 2.1 32 207-238 4-36 (54)
28 KOG1814 Predicted E3 ubiquitin 78.3 0.88 1.9E-05 44.5 0.8 32 207-238 183-214 (445)
29 KOG0828 Predicted E3 ubiquitin 77.8 0.55 1.2E-05 47.0 -0.8 33 206-238 569-615 (636)
30 KOG0825 PHD Zn-finger protein 76.0 0.57 1.2E-05 49.2 -1.2 30 206-235 121-150 (1134)
31 KOG2034 Vacuolar sorting prote 75.5 1 2.3E-05 47.6 0.5 32 206-238 815-846 (911)
32 KOG2164 Predicted E3 ubiquitin 74.4 1.5 3.2E-05 43.9 1.2 25 208-235 186-210 (513)
33 KOG4265 Predicted E3 ubiquitin 71.6 2 4.4E-05 41.1 1.3 24 206-232 288-311 (349)
34 KOG3970 Predicted E3 ubiquitin 71.4 1.5 3.3E-05 40.1 0.4 32 207-239 49-80 (299)
35 KOG0823 Predicted E3 ubiquitin 70.2 3.6 7.9E-05 37.3 2.6 31 206-239 45-80 (230)
36 KOG0317 Predicted E3 ubiquitin 69.2 2.7 5.8E-05 39.4 1.6 27 206-235 237-263 (293)
37 PF11789 zf-Nse: Zinc-finger o 69.0 3.5 7.5E-05 29.3 1.8 28 206-235 9-36 (57)
38 PF05883 Baculo_RING: Baculovi 67.1 1.5 3.2E-05 36.8 -0.5 31 207-237 25-61 (134)
39 KOG1941 Acetylcholine receptor 63.2 1.9 4E-05 42.3 -0.7 33 206-238 363-396 (518)
40 PF11241 DUF3043: Protein of u 62.8 21 0.00046 31.0 5.8 66 20-88 61-129 (170)
41 KOG1039 Predicted E3 ubiquitin 59.2 3.8 8.2E-05 39.2 0.6 30 206-235 159-193 (344)
42 KOG1571 Predicted E3 ubiquitin 55.1 6.1 0.00013 38.0 1.2 24 206-232 303-326 (355)
43 COG5194 APC11 Component of SCF 52.7 6.4 0.00014 30.6 0.8 27 209-235 32-60 (88)
44 smart00249 PHD PHD zinc finger 49.1 14 0.00031 23.1 1.9 30 210-239 1-30 (47)
45 PF06667 PspB: Phage shock pro 45.1 27 0.00059 26.4 3.2 23 39-68 3-25 (75)
46 KOG1428 Inhibitor of type V ad 42.3 9.6 0.00021 43.4 0.4 30 206-235 3484-3513(3738)
47 PF14002 YniB: YniB-like prote 40.5 77 0.0017 27.6 5.5 46 65-110 84-136 (166)
48 COG5574 PEX10 RING-finger-cont 40.0 13 0.00028 34.6 0.8 30 206-238 213-242 (271)
49 PRK09458 pspB phage shock prot 38.9 35 0.00076 26.0 2.9 22 39-67 3-24 (75)
50 PF13719 zinc_ribbon_5: zinc-r 37.7 18 0.00039 23.3 1.0 26 209-234 3-36 (37)
51 PF13239 2TM: 2TM domain 37.4 1E+02 0.0022 22.9 5.3 42 38-79 19-62 (83)
52 COG5219 Uncharacterized conser 36.9 7.1 0.00015 42.3 -1.5 35 206-240 1467-1510(1525)
53 COG5152 Uncharacterized conser 36.9 13 0.00027 33.6 0.3 24 209-235 197-220 (259)
54 PF05366 Sarcolipin: Sarcolipi 36.8 28 0.0006 22.0 1.7 26 31-56 5-30 (31)
55 PF11044 TMEMspv1-c74-12: Plec 35.6 1.1E+02 0.0023 21.4 4.5 31 59-89 2-36 (49)
56 KOG2066 Vacuolar assembly/sort 35.0 17 0.00037 38.5 0.9 33 206-238 782-818 (846)
57 PF10942 DUF2619: Protein of u 33.5 54 0.0012 24.6 3.1 21 51-71 48-68 (69)
58 KOG1940 Zn-finger protein [Gen 32.7 15 0.00032 34.3 -0.0 29 207-235 157-186 (276)
59 PF10571 UPF0547: Uncharacteri 32.0 22 0.00048 21.5 0.7 23 210-234 2-25 (26)
60 PF13829 DUF4191: Domain of un 31.0 2.3E+02 0.0049 25.8 7.3 32 39-73 33-64 (224)
61 KOG1493 Anaphase-promoting com 30.7 10 0.00023 29.2 -1.1 28 208-235 20-57 (84)
62 KOG0827 Predicted E3 ubiquitin 27.7 6.2 0.00013 38.7 -3.4 29 207-235 195-224 (465)
63 KOG3039 Uncharacterized conser 25.9 79 0.0017 29.5 3.5 93 145-237 141-251 (303)
64 PHA03096 p28-like protein; Pro 25.5 24 0.00051 33.0 0.0 27 209-235 179-210 (284)
65 TIGR02976 phageshock_pspB phag 25.4 90 0.0019 23.6 3.2 22 39-67 3-24 (75)
66 PF07282 OrfB_Zn_ribbon: Putat 25.2 1.1E+02 0.0025 21.5 3.6 31 207-237 27-60 (69)
67 KOG1812 Predicted E3 ubiquitin 25.1 19 0.00041 34.7 -0.7 32 207-238 145-177 (384)
68 PF09125 COX2-transmemb: Cytoc 24.9 75 0.0016 21.1 2.3 17 38-54 16-32 (38)
69 PF13832 zf-HC5HC2H_2: PHD-zin 24.7 54 0.0012 25.2 2.0 31 207-239 54-86 (110)
70 PF06966 DUF1295: Protein of u 24.6 2.9E+02 0.0063 24.5 6.9 48 55-102 113-164 (235)
71 PF13717 zinc_ribbon_4: zinc-r 24.3 37 0.0008 21.9 0.8 15 209-223 3-17 (36)
72 PF04641 Rtf2: Rtf2 RING-finge 24.1 49 0.0011 29.9 1.8 30 206-235 111-141 (260)
73 PF10852 DUF2651: Protein of u 23.9 85 0.0018 24.3 2.8 27 42-68 33-59 (82)
74 PF10981 DUF2788: Protein of u 23.7 67 0.0014 22.8 2.0 32 42-73 2-41 (52)
75 KOG2930 SCF ubiquitin ligase, 23.6 29 0.00062 28.2 0.2 29 207-235 45-87 (114)
76 KOG1815 Predicted E3 ubiquitin 23.3 34 0.00073 33.4 0.6 27 207-235 69-95 (444)
77 PF04418 DUF543: Domain of unk 23.1 1E+02 0.0022 23.3 3.1 38 40-85 36-73 (75)
78 PF00628 PHD: PHD-finger; Int 22.2 74 0.0016 21.0 2.0 30 210-239 1-30 (51)
79 PF04564 U-box: U-box domain; 22.0 48 0.001 24.1 1.1 26 207-235 3-28 (73)
80 KOG2114 Vacuolar assembly/sort 22.0 28 0.00061 37.2 -0.2 31 207-239 839-869 (933)
81 PF06390 NESP55: Neuroendocrin 21.6 1.2E+02 0.0025 27.8 3.6 30 59-88 29-58 (257)
82 PF07219 HemY_N: HemY protein 21.4 3.9E+02 0.0085 20.7 6.6 43 30-79 8-50 (108)
83 PHA02688 ORF059 IMV protein VP 21.4 1.1E+02 0.0023 29.4 3.5 15 59-73 307-321 (323)
84 KOG1952 Transcription factor N 21.2 37 0.00081 36.4 0.5 30 206-235 189-219 (950)
85 PF03213 Pox_P35: Poxvirus P35 21.0 1E+02 0.0022 29.5 3.3 15 59-73 309-323 (325)
86 KOG1101 Apoptosis inhibitor IA 20.0 40 0.00087 28.5 0.4 25 206-230 52-82 (147)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5e-12 Score=118.66 Aligned_cols=56 Identities=30% Similarity=0.706 Sum_probs=47.4
Q ss_pred CCCCHHHHhcCCeEEeeccCCCCCCCcccCCCCCCcccccccccccccccCCCCCcccccccccccCCceeEEcCCCCcc
Q 026177 154 ASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQQ 233 (242)
Q Consensus 154 ~G~See~I~aLPv~kyk~~~~~~gss~~~~~Ss~~~~e~~~ds~~~~g~~k~~~e~tCsICLEdF~~GE~VR~LPC~H~F 233 (242)
..+.+..+.++|+++|+..... ....+|+||||+|++||+||.|||.|.|
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~------------------------------~~~~~CaIClEdY~~GdklRiLPC~H~F 254 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDE------------------------------DATDTCAICLEDYEKGDKLRILPCSHKF 254 (348)
T ss_pred hhhHHHHHhhCCcEEecccccc------------------------------CCCceEEEeecccccCCeeeEecCCCch
Confidence 4789999999999999976421 1226999999999999999999999999
Q ss_pred cc-----hhhc
Q 026177 234 NV-----WLLS 239 (242)
Q Consensus 234 H~-----wLls 239 (242)
|. ||..
T Consensus 255 H~~CIDpWL~~ 265 (348)
T KOG4628|consen 255 HVNCIDPWLTQ 265 (348)
T ss_pred hhccchhhHhh
Confidence 96 8865
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.42 E-value=5.9e-08 Score=64.82 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=25.2
Q ss_pred cccccccccccCCceeEEcCCCCcccc
Q 026177 209 LTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.+|+||+++|..++.+..|||+|.||.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~ 27 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHR 27 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCH
Confidence 379999999999999999999999996
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.2e-06 Score=81.44 Aligned_cols=33 Identities=33% Similarity=0.879 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc-----hhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV-----WLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~-----wLl 238 (242)
....+|+||+++|.+||+++.|||.|.||. |++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~ 358 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL 358 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHh
Confidence 345789999999999999999999999995 876
No 4
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=8.6e-06 Score=70.09 Aligned_cols=30 Identities=33% Similarity=0.824 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.+.-+|.|||||.+.||++-+|||..+|||
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 567899999999999999999999999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.49 E-value=5.9e-05 Score=68.13 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=37.9
Q ss_pred CCCHHHHhcCCeEEeeccCCCCCCCcccCCCCCCcccccccccccccccCCCCCcccccccccccCCce----eEEc-CC
Q 026177 155 SMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEI----VRSL-PC 229 (242)
Q Consensus 155 G~See~I~aLPv~kyk~~~~~~gss~~~~~Ss~~~~e~~~ds~~~~g~~k~~~e~tCsICLEdF~~GE~----VR~L-PC 229 (242)
+.++.-|+++|.+..+..... ...++.+|+||+|.+.+.+. +..| ||
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~----------------------------~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C 200 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLY----------------------------NRSKDKECAICMEKVYDKEIKNMYFGILSNC 200 (238)
T ss_pred chhHHHHHhcchhhhhhhhhh----------------------------cCCCCCCCccCCcccccCccccccceecCCC
Confidence 568999999998865532210 11356799999999887652 3455 59
Q ss_pred CCcccc
Q 026177 230 LHQQNV 235 (242)
Q Consensus 230 ~H~FH~ 235 (242)
+|.||.
T Consensus 201 ~H~FC~ 206 (238)
T PHA02929 201 NHVFCI 206 (238)
T ss_pred CCcccH
Confidence 999997
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.16 E-value=0.00022 Score=52.98 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCcccccccccccC----------CceeEEcCCCCcccc-----hhhc
Q 026177 207 DELTCTVCLEQVNV----------GEIVRSLPCLHQQNV-----WLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~----------GE~VR~LPC~H~FH~-----wLls 239 (242)
.++.|+||++.|.+ +-.+...+|+|.||. ||..
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~ 65 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ 65 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc
Confidence 34569999999932 235666789999996 7654
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.08 E-value=0.00025 Score=45.24 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=21.9
Q ss_pred ccccccccccCCceeEEcCCCCcccchhh
Q 026177 210 TCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
+|+||++.+ .+.+...||+|.||..++
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~ 27 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCI 27 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHH
Confidence 599999999 566777779999997443
No 8
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00016 Score=71.65 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCce--eEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEI--VRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~--VR~LPC~H~FH~wLl 238 (242)
.....|.||+|+...++. .++|||+|.||.+|+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL 323 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCL 323 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHH
Confidence 457899999999999987 999999999997544
No 9
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.75 E-value=0.00055 Score=42.04 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.0
Q ss_pred cccccccccCCceeEEcCCCCcccchhh
Q 026177 211 CTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 211 CsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
|+||++. .+....+||+|.||.+++
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~ 25 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCI 25 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHH
Confidence 8899888 567888999999997554
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00055 Score=65.64 Aligned_cols=35 Identities=29% Similarity=0.745 Sum_probs=28.3
Q ss_pred CCCccccccccc-ccCCc---------eeEEcCCCCcccc-----hhhcC
Q 026177 206 EDELTCTVCLEQ-VNVGE---------IVRSLPCLHQQNV-----WLLSV 240 (242)
Q Consensus 206 ~~e~tCsICLEd-F~~GE---------~VR~LPC~H~FH~-----wLls~ 240 (242)
+++-.|.||+|+ |..+. +-++|||+|.||- ||.+-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq 334 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ 334 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc
Confidence 577899999999 77772 3589999999995 77654
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.37 E-value=0.0012 Score=42.94 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.0
Q ss_pred cccccccccCCceeEEcCCCCcccchh
Q 026177 211 CTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 211 CsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
|+||++.+.... +.+||+|.|+..+
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C 25 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDC 25 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHH
T ss_pred CCcCCccccCCC--EEecCCCcchHHH
Confidence 899999887665 8899999999743
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.18 E-value=0.0024 Score=41.48 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.6
Q ss_pred cccccccccCCceeEEcCCCCcccchh
Q 026177 211 CTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 211 CsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
|+||++.+.+ .+..+||+|.|...+
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C 25 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKEC 25 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHH
T ss_pred CCCCCCcccC--cCEECCCCCchhHHH
Confidence 8999998887 778899999999733
No 13
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.14 E-value=0.0026 Score=42.56 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.8
Q ss_pred ccccccccccCCceeEEcCCCCcccchhh
Q 026177 210 TCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.|.||.++|.+.+..+.++|+|.|...++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~ 29 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCL 29 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHH
Confidence 49999999977778999999999987554
No 14
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.02 E-value=0.0032 Score=42.66 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=13.6
Q ss_pred cccccccccCCc-eeEEcCCCCcccch
Q 026177 211 CTVCLEQVNVGE-IVRSLPCLHQQNVW 236 (242)
Q Consensus 211 CsICLEdF~~GE-~VR~LPC~H~FH~w 236 (242)
|+||.| |...| .-..|||+|.|=+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~ 26 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKD 26 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHH
Confidence 899999 86665 45779999999763
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=94.30 E-value=0.02 Score=38.99 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.1
Q ss_pred CcccccccccccCCceeEEcCCCCc-ccch
Q 026177 208 ELTCTVCLEQVNVGEIVRSLPCLHQ-QNVW 236 (242)
Q Consensus 208 e~tCsICLEdF~~GE~VR~LPC~H~-FH~w 236 (242)
+..|.||++.... +..+||+|. |-.+
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~ 28 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEE 28 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHH
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHH
Confidence 4689999998654 788899999 8753
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=93.71 E-value=0.027 Score=50.93 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCCcccccccccccC----Cc-eeEEcC-CCCcccchh
Q 026177 206 EDELTCTVCLEQVNV----GE-IVRSLP-CLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~----GE-~VR~LP-C~H~FH~wL 237 (242)
..+.+|+||+|..-+ +| .-..|| |+|.|...|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~C 205 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITC 205 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHH
Confidence 467899999998633 22 345675 999999633
No 17
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.52 E-value=0.019 Score=53.87 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
..-.|+|||-.|.+++...+-+|-|+||-.|+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~Cl 145 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACL 145 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHH
Confidence 45689999999999999999999999997554
No 18
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.23 E-value=0.06 Score=41.06 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.++..|+||-..+.. ...-..||+|.||.-|.+
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456789999998877 677888999999987653
No 19
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.65 E-value=0.054 Score=53.18 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=26.3
Q ss_pred CCCcccccccccccCCc-eeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGE-IVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE-~VR~LPC~H~FH~wLl 238 (242)
.+-.||+||||-....- -++..+|.|.||..|+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl 206 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCL 206 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHH
Confidence 46689999999987663 5778889999996444
No 20
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.06 Score=50.02 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCc-------eeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGE-------IVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE-------~VR~LPC~H~FH~ 235 (242)
.++..|+||-.++...+ ..-+|.|+|.||.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHE 258 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHE 258 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHH
Confidence 46678999999988776 7888999999997
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=90.25 E-value=0.14 Score=34.14 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=18.1
Q ss_pred cccccccccCCceeEEcCCCCcccchhh
Q 026177 211 CTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 211 CsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
|+||++-|++ =.+|+|+|.|=+.++
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl 25 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCL 25 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHH
T ss_pred CCccchhhCC---ccccCCcCHHHHHHH
Confidence 8999999864 456899999987554
No 22
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.94 E-value=0.14 Score=35.35 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.2
Q ss_pred ccccccccccCCceeEEcCCC-----Ccccc
Q 026177 210 TCTVCLEQVNVGEIVRSLPCL-----HQQNV 235 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LPC~-----H~FH~ 235 (242)
.|.||++ +.+++.....||. |.+|.
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~ 30 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQ 30 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHH
Confidence 4999999 4444444578984 89996
No 23
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=86.46 E-value=0.29 Score=37.99 Aligned_cols=33 Identities=21% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCccccccccccc--------CCceeE-Ec-CCCCcccc-----hhhc
Q 026177 207 DELTCTVCLEQVN--------VGEIVR-SL-PCLHQQNV-----WLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~--------~GE~VR-~L-PC~H~FH~-----wLls 239 (242)
+++.|.||...|. +||... .+ .|+|.||. ||.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~ 67 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLST 67 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcc
Confidence 4678888888887 455422 23 39999994 8764
No 24
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=86.21 E-value=0.37 Score=35.52 Aligned_cols=32 Identities=28% Similarity=0.615 Sum_probs=10.6
Q ss_pred CcccccccccccCCceeEE----cC-CCCcccc-----hhhc
Q 026177 208 ELTCTVCLEQVNVGEIVRS----LP-CLHQQNV-----WLLS 239 (242)
Q Consensus 208 e~tCsICLEdF~~GE~VR~----LP-C~H~FH~-----wLls 239 (242)
+.+|.||.+.+.+++.+-. -+ |++.||. |+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~ 43 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS 43 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH
Confidence 4689999998774432222 13 9999996 6654
No 25
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=0.41 Score=42.01 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
+....|+|||+.|.+-..+ .--|+|.|-+.|+
T Consensus 129 ~~~~~CPiCl~~~sek~~v-sTkCGHvFC~~Ci 160 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV-STKCGHVFCSQCI 160 (187)
T ss_pred ccccCCCceecchhhcccc-ccccchhHHHHHH
Confidence 4568999999999876653 1249999987554
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=84.31 E-value=0.73 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=19.6
Q ss_pred cccccccccccCCceeEEcCCCCcccc
Q 026177 209 LTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
..|+||.+-+++- | .+||+|.|-+
T Consensus 2 ~~Cpi~~~~~~~P--v-~~~~G~v~~~ 25 (63)
T smart00504 2 FLCPISLEVMKDP--V-ILPSGQTYER 25 (63)
T ss_pred cCCcCCCCcCCCC--E-ECCCCCEEeH
Confidence 5799999998763 3 4699999986
No 27
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=83.11 E-value=0.95 Score=32.36 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCcccccccccccCCceeEEcC-CCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLP-CLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LP-C~H~FH~wLl 238 (242)
....|.+|-+.|+++|.+-.=| |+=-||+|+-
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 4568999999999999888889 9999999764
No 28
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.30 E-value=0.88 Score=44.50 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=26.9
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
..-.|.||.++..-.+-...|||.|.|-+-|+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~ 214 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCL 214 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHH
Confidence 45689999999877799999999999987543
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=0.55 Score=46.98 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=22.6
Q ss_pred CCCcccccccccccC---CceeEEc-----------CCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNV---GEIVRSL-----------PCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~---GE~VR~L-----------PC~H~FH~wLl 238 (242)
+....|+||+.+..- |...... ||.|.||.-||
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL 615 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCL 615 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHH
Confidence 466789999988653 3333333 99999997443
No 30
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.02 E-value=0.57 Score=49.20 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.....|.+||..|.++.+.-.-+|.|+||+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 456789999999999999999999999997
No 31
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=1 Score=47.56 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
+..++|.+|--.+. +..--.-||+|.||+.|+
T Consensus 815 ep~d~C~~C~~~ll-~~pF~vf~CgH~FH~~Cl 846 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLL-IKPFYVFPCGHCFHRDCL 846 (911)
T ss_pred cCccchHHhcchhh-cCcceeeeccchHHHHHH
Confidence 56789999955444 456677899999998664
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=1.5 Score=43.92 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=19.0
Q ss_pred CcccccccccccCCceeEEcCCCCcccc
Q 026177 208 ELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 208 e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
+..|+|||+....- +++. |+|+|--
T Consensus 186 ~~~CPICL~~~~~p--~~t~-CGHiFC~ 210 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--VRTN-CGHIFCG 210 (513)
T ss_pred CCcCCcccCCCCcc--cccc-cCceeeH
Confidence 68999999986543 3444 9999975
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=2 Score=41.11 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=18.7
Q ss_pred CCCcccccccccccCCceeEEcCCCCc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ 232 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~ 232 (242)
+...+|.|||.+-+ .+-.|||.|-
T Consensus 288 ~~gkeCVIClse~r---dt~vLPCRHL 311 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLPCRHL 311 (349)
T ss_pred cCCCeeEEEecCCc---ceEEecchhh
Confidence 34679999999854 4678999994
No 34
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.43 E-value=1.5 Score=40.08 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=27.5
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
-...|..|--....||.+| |-|.|.||..|++
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~Cln 80 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLN 80 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhh
Confidence 4568999999999999886 7799999987765
No 35
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.17 E-value=3.6 Score=37.32 Aligned_cols=31 Identities=26% Similarity=0.586 Sum_probs=22.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCccc-----chhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQN-----VWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH-----~wLls 239 (242)
...-+|.||||.-+ |-|-+ +|+|-|- +||..
T Consensus 45 ~~~FdCNICLd~ak--dPVvT-lCGHLFCWpClyqWl~~ 80 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK--DPVVT-LCGHLFCWPCLYQWLQT 80 (230)
T ss_pred CCceeeeeeccccC--CCEEe-ecccceehHHHHHHHhh
Confidence 46689999999855 33332 4999885 58864
No 36
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.24 E-value=2.7 Score=39.38 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=20.4
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
+..-.|++|||.-.. ---.||+|.|-.
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTpCGHiFCW 263 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATPCGHIFCW 263 (293)
T ss_pred CCCCceEEEecCCCC---CCcCcCcchHHH
Confidence 455789999987432 345799999986
No 37
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=68.97 E-value=3.5 Score=29.35 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=19.6
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.....|+|.+..|+ |-|+...|+|.|=+
T Consensus 9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek 36 (57)
T PF11789_consen 9 TISLKCPITLQPFE--DPVKSKKCGHTFEK 36 (57)
T ss_dssp B--SB-TTTSSB-S--SEEEESSS--EEEH
T ss_pred EeccCCCCcCChhh--CCcCcCCCCCeecH
Confidence 35689999999987 89999999999986
No 38
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.07 E-value=1.5 Score=36.79 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCcccccccccccCCceeEEcCC------CCcccchh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPC------LHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC------~H~FH~wL 237 (242)
...+|.||++...+++-|--++| -|.||+.|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C 61 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADC 61 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHH
Confidence 36789999999999777888888 47888644
No 39
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=63.25 E-value=1.9 Score=42.31 Aligned_cols=33 Identities=36% Similarity=0.693 Sum_probs=27.5
Q ss_pred CCCcccccccccccCC-ceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVG-EIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~G-E~VR~LPC~H~FH~wLl 238 (242)
+.+.-|..|=|.+... |.+--|||.|+||..|+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl 396 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCL 396 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHH
Confidence 4568899999999776 57999999999997544
No 40
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=62.76 E-value=21 Score=31.00 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=33.1
Q ss_pred CcCcceeeec-cCcccCCChhHHHHHHHHHHHHHhccCCChhHHHHHH--HHHHHHHhhhHHHHHHHHHHHH
Q 026177 20 IPERRTVRIH-AGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIV--LGIFLLATSLRMYATCQQLHAQ 88 (242)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~--~~~~~~a~~~r~ya~~~~~q~~ 88 (242)
-|+|+.+|.- -+|--=++.+..+..|+|+.+++ +.+|.+-+|+. +-+++++..+..+-....+...
T Consensus 61 GP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~v---~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~vkk~ 129 (170)
T PF11241_consen 61 GPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSFV---VPSPQVQLYVTLAMYVLLLLVIIDGVILGRRVKKR 129 (170)
T ss_pred cchhhhhhhhhhcccchHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899876 44442233333333344444444 33344443333 2234455556666666666444
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.23 E-value=3.8 Score=39.23 Aligned_cols=30 Identities=30% Similarity=0.623 Sum_probs=21.4
Q ss_pred CCCcccccccccccCCc----eeEEcC-CCCcccc
Q 026177 206 EDELTCTVCLEQVNVGE----IVRSLP-CLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE----~VR~LP-C~H~FH~ 235 (242)
..+.+|.||+|..-+-- ..++|| |.|.|=.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl 193 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCL 193 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhh
Confidence 45789999999765432 234568 9999875
No 42
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.13 E-value=6.1 Score=38.03 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=20.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ 232 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~ 232 (242)
....-|.||+++.++ ..-+||+|.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~ 326 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHV 326 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcE
Confidence 455789999999887 788999996
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=52.72 E-value=6.4 Score=30.56 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=19.3
Q ss_pred cccccccccccCCceeEE-cC-CCCcccc
Q 026177 209 LTCTVCLEQVNVGEIVRS-LP-CLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE~VR~-LP-C~H~FH~ 235 (242)
.+|.-|......|++... .. |.|.||.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~ 60 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHD 60 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHH
Confidence 567777776677776544 34 9999995
No 44
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.10 E-value=27 Score=26.42 Aligned_cols=23 Identities=35% Similarity=0.859 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 026177 39 LAFLVTVLLLFMILNSHQMSSNFLLWIVLG 68 (242)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~ 68 (242)
..|++..+++|||+.. .+|+++-
T Consensus 3 ~~fl~~plivf~ifVa-------p~WL~lH 25 (75)
T PF06667_consen 3 FEFLFVPLIVFMIFVA-------PIWLILH 25 (75)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 5688889999999987 5787754
No 46
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=42.31 E-value=9.6 Score=43.39 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
+.++.|-||.-+--.-....+|-|+|.||-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHl 3513 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHL 3513 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhH
Confidence 456789999988777788999999999995
No 47
>PF14002 YniB: YniB-like protein
Probab=40.46 E-value=77 Score=27.58 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hcCccccccc----cccCCc
Q 026177 65 IVLGIFLLATSLRMYATCQQLHAQAQAHAV---ASGLLGHTEL----RLQMPP 110 (242)
Q Consensus 65 ~~~~~~~~a~~~r~ya~~~~~q~~~~a~~~---~~g~~g~~~l----~~~~pp 110 (242)
|+.|..|-||+.|||...+.+.+.-+.+-. +-|-.|+|.- ++.+|.
T Consensus 84 iFvGlAL~aSG~rm~rqvk~ire~IEdqlIlE~akG~~g~treqlE~~i~vPr 136 (166)
T PF14002_consen 84 IFVGLALQASGARMSRQVKFIREGIEDQLILEQAKGSEGRTREQLEERIVVPR 136 (166)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHhcCCccccHHHHHhcccCCC
Confidence 347888899999999998877664333322 6677666642 345663
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.98 E-value=13 Score=34.60 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
..+..|.||++.- +..-..||+|.|-.-|+
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl 242 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCL 242 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHH
Confidence 4567899998764 45667899999986444
No 49
>PRK09458 pspB phage shock protein B; Provisional
Probab=38.90 E-value=35 Score=25.99 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHH
Q 026177 39 LAFLVTVLLLFMILNSHQMSSNFLLWIVL 67 (242)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~f~~w~~~ 67 (242)
+.||+.-+++|||+.. .+|+++
T Consensus 3 ~~fl~~PliiF~ifVa-------PiWL~L 24 (75)
T PRK09458 3 ALFLAIPLTIFVLFVA-------PIWLWL 24 (75)
T ss_pred chHHHHhHHHHHHHHH-------HHHHHH
Confidence 6788889999999876 478764
No 50
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=37.71 E-value=18 Score=23.35 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=16.4
Q ss_pred cccccccccccCCce--------eEEcCCCCccc
Q 026177 209 LTCTVCLEQVNVGEI--------VRSLPCLHQQN 234 (242)
Q Consensus 209 ~tCsICLEdF~~GE~--------VR~LPC~H~FH 234 (242)
.+|+-|-..|+..|. ||-=-|+|.|+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 468888888877763 22222677765
No 51
>PF13239 2TM: 2TM domain
Probab=37.44 E-value=1e+02 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHhccCCChhHHHH--HHHHHHHHHhhhHHH
Q 026177 38 SLAFLVTVLLLFMILNSHQMSSNFLLW--IVLGIFLLATSLRMY 79 (242)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~f~~w--~~~~~~~~a~~~r~y 79 (242)
-.+|+++..+++.|-..-.-...+-+| ++.|+.+..+++++|
T Consensus 19 l~~y~ivn~~l~~in~~~~~~~~W~~~~~~~Wgi~L~~h~~~vf 62 (83)
T PF13239_consen 19 LAVYLIVNSFLIFINLFTGPGYFWPLWPILGWGIGLAIHALKVF 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 355666655544443322222224567 456788888888876
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=36.90 E-value=7.1 Score=42.34 Aligned_cols=35 Identities=14% Similarity=0.504 Sum_probs=22.5
Q ss_pred CCCcccccccccccCCc---eeEEcC-CCCcccc-----hhhcC
Q 026177 206 EDELTCTVCLEQVNVGE---IVRSLP-CLHQQNV-----WLLSV 240 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE---~VR~LP-C~H~FH~-----wLls~ 240 (242)
+.-++|+||-.-...=| .-++=| |.|.||. |..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss 1510 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS 1510 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc
Confidence 56689999976654222 122334 8999995 76553
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=36.89 E-value=13 Score=33.63 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=17.9
Q ss_pred cccccccccccCCceeEEcCCCCcccc
Q 026177 209 LTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
-.|.||.++|+.--. --|+|.|-.
T Consensus 197 F~C~iCKkdy~spvv---t~CGH~FC~ 220 (259)
T COG5152 197 FLCGICKKDYESPVV---TECGHSFCS 220 (259)
T ss_pred eeehhchhhccchhh---hhcchhHHH
Confidence 489999999986322 139999964
No 54
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=36.77 E-value=28 Score=21.96 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=16.8
Q ss_pred CcccCCChhHHHHHHHHHHHHHhccC
Q 026177 31 GRPVNSNSLAFLVTVLLLFMILNSHQ 56 (242)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (242)
.|-.--|+-+-||||++.+...-|-|
T Consensus 5 trel~lnftvvlitvilmwllvrsyq 30 (31)
T PF05366_consen 5 TRELFLNFTVVLITVILMWLLVRSYQ 30 (31)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence 34445577788899888777665544
No 55
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.60 E-value=1.1e+02 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Q 026177 59 SNFLLWIVLGIFLLA----TSLRMYATCQQLHAQA 89 (242)
Q Consensus 59 ~~f~~w~~~~~~~~a----~~~r~ya~~~~~q~~~ 89 (242)
|.+|-||+.-|.+++ .+|-+|.-.+|.+.+.
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556667666665555 3888999999998753
No 56
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.97 E-value=17 Score=38.47 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=26.1
Q ss_pred CCCccccccccccc-CC---ceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVN-VG---EIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~-~G---E~VR~LPC~H~FH~wLl 238 (242)
..+..|+-|.+-.- .| +.+..+-|+|.||+.|+
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~ 818 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECL 818 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhccc
Confidence 44568999988766 44 67999999999998664
No 57
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=33.48 E-value=54 Score=24.60 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.2
Q ss_pred HHhccCCChhHHHHHHHHHHH
Q 026177 51 ILNSHQMSSNFLLWIVLGIFL 71 (242)
Q Consensus 51 ~~~~~~~~~~f~~w~~~~~~~ 71 (242)
+=.+.++|+.=++||..||.+
T Consensus 48 ~gla~kls~~kl~~I~~GV~l 68 (69)
T PF10942_consen 48 AGLADKLSPSKLLWIFAGVAL 68 (69)
T ss_pred HHHhcccCHHHHHHHHhccee
Confidence 334569999999999999865
No 58
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=32.70 E-value=15 Score=34.32 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.6
Q ss_pred CCcccccccccccCCc-eeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVGE-IVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE-~VR~LPC~H~FH~ 235 (242)
.+..|+||.|..-.+. .+..|||+|.-|.
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~ 186 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHS 186 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHH
Confidence 3455999999988885 7889999999995
No 59
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.03 E-value=22 Score=21.53 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=13.1
Q ss_pred ccccccccccCCceeEEcC-CCCccc
Q 026177 210 TCTVCLEQVNVGEIVRSLP-CLHQQN 234 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LP-C~H~FH 234 (242)
+|+-|-.++.. ..+.=| |+|.|-
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCCc
Confidence 46666555533 334447 888773
No 60
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=30.97 E-value=2.3e+02 Score=25.77 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 026177 39 LAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLA 73 (242)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~a 73 (242)
.+|++++.+.+.|-..-. ++++|+++|+.+-+
T Consensus 33 ~a~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~ 64 (224)
T PF13829_consen 33 GAFLGPIAVFVLIGLLFG---SWWYWLIIGILLGL 64 (224)
T ss_pred HHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHH
Confidence 355555544333322211 78899999987655
No 61
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.72 E-value=10 Score=29.18 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=19.3
Q ss_pred Cccccccccccc--------CCceeEE-cC-CCCcccc
Q 026177 208 ELTCTVCLEQVN--------VGEIVRS-LP-CLHQQNV 235 (242)
Q Consensus 208 e~tCsICLEdF~--------~GE~VR~-LP-C~H~FH~ 235 (242)
+++|-||--.|. +||..-. +. |.|.||.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~ 57 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHA 57 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHH
Confidence 348888888776 4554333 34 9999995
No 62
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=6.2 Score=38.67 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=26.3
Q ss_pred CCcccccccccccCC-ceeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVG-EIVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~G-E~VR~LPC~H~FH~ 235 (242)
....|+||-++|+.. |.+..+-|+|.+|.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~ 224 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHH 224 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchh
Confidence 346899999999999 99999999999996
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.87 E-value=79 Score=29.53 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=51.7
Q ss_pred cccCCCCCCCCCCHHHHhcCCeEEeeccCCCCCCCc--------ccCCCCCCcccc--------cccccccccccCC-CC
Q 026177 145 LDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASS--------MQLGSSSSPAEK--------KLETSISVGNLKT-ED 207 (242)
Q Consensus 145 LD~~~~~~~~G~See~I~aLPv~kyk~~~~~~gss~--------~~~~Ss~~~~e~--------~~ds~~~~g~~k~-~~ 207 (242)
.+..+......++++....||.+-+....+..+.+- .++-|..+-.-+ ..++...+-++.. ..
T Consensus 141 ~~~~~~~~~sn~~~d~~k~lpsFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ 220 (303)
T KOG3039|consen 141 FHGANSVSTSNMEEDKLKTLPSFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDLFAVKFTPLNSEETETKLIAASK 220 (303)
T ss_pred ccccCCccccCccccccccccceecCccCchhhhhcccCCCceeeccCCCCccchhhcceeeeeecCCchhhhhhhhhcc
Confidence 334445555678899999999887776544222111 111111100000 0112111111222 35
Q ss_pred CcccccccccccCCceeEEc-CCCCcccchh
Q 026177 208 ELTCTVCLEQVNVGEIVRSL-PCLHQQNVWL 237 (242)
Q Consensus 208 e~tCsICLEdF~~GE~VR~L-PC~H~FH~wL 237 (242)
...|+||-+....--.+-.| ||+|.|-..|
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ec 251 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKEC 251 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHH
Confidence 67899999999988888888 6999997644
No 64
>PHA03096 p28-like protein; Provisional
Probab=25.48 E-value=24 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=21.5
Q ss_pred cccccccccccCCc----eeEEcC-CCCcccc
Q 026177 209 LTCTVCLEQVNVGE----IVRSLP-CLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE----~VR~LP-C~H~FH~ 235 (242)
..|.||+|...... .-..|| |.|.|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~ 210 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNI 210 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHH
Confidence 57999999888643 455699 9999975
No 65
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.38 E-value=90 Score=23.58 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHH
Q 026177 39 LAFLVTVLLLFMILNSHQMSSNFLLWIVL 67 (242)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~f~~w~~~ 67 (242)
..|++.-+++|||+.. .+|+++
T Consensus 3 ~~fl~~Pliif~ifVa-------p~wl~l 24 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVA-------PLWLIL 24 (75)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4688888889998876 467764
No 66
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.16 E-value=1.1e+02 Score=21.46 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCcccccccccccC--CceeEEcC-CCCcccchh
Q 026177 207 DELTCTVCLEQVNV--GEIVRSLP-CLHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLEdF~~--GE~VR~LP-C~H~FH~wL 237 (242)
...+|+.|-...+. .+.+-.-| |++.+|+.+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~ 60 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDV 60 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHH
Confidence 44689999888877 44555556 999999754
No 67
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=19 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCcccccccccccCC-ceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVG-EIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~G-E~VR~LPC~H~FH~wLl 238 (242)
...+|.||..++... +....+-|+|.|=+++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~ 177 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCV 177 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHh
Confidence 457899999555555 45556669999987554
No 68
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.92 E-value=75 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHhc
Q 026177 38 SLAFLVTVLLLFMILNS 54 (242)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ 54 (242)
-++|-++++++|.++.+
T Consensus 16 Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 16 WIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888888865
No 69
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.73 E-value=54 Score=25.25 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCcccccccccccCCceeEEcC--CCCcccchhhc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLP--CLHQQNVWLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LP--C~H~FH~wLls 239 (242)
....|.||... .|-.++--- |...||..+..
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 45799999888 676666554 99999986643
No 70
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=24.60 E-value=2.9e+02 Score=24.47 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=32.9
Q ss_pred cCCChhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-H-HH-H-hcCccccc
Q 026177 55 HQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQ-A-HA-V-ASGLLGHT 102 (242)
Q Consensus 55 ~~~~~~f~~w~~~~~~~~a~~~r~ya~~~~~q~~~~-a-~~-~-~~g~~g~~ 102 (242)
.+-+.+++.|++.++++.+-.+...|-+|+-+.+++ + +. . ..|+-..+
T Consensus 113 ~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw~~s 164 (235)
T PF06966_consen 113 PNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLWRYS 164 (235)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCeeeee
Confidence 455677778888888888888888888887776642 1 11 2 66665544
No 71
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.25 E-value=37 Score=21.85 Aligned_cols=15 Identities=20% Similarity=0.647 Sum_probs=10.2
Q ss_pred cccccccccccCCce
Q 026177 209 LTCTVCLEQVNVGEI 223 (242)
Q Consensus 209 ~tCsICLEdF~~GE~ 223 (242)
.+|+=|.-.|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE 17 (36)
T ss_pred EECCCCCCEEeCCHH
Confidence 367777777776654
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=24.06 E-value=49 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCCcccccccccccCCce-eEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~-VR~LPC~H~FH~ 235 (242)
.....|+|+..+|...-. |-..||+|.|=.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~ 141 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSE 141 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeH
Confidence 466899999999955444 444589999864
No 73
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=23.90 E-value=85 Score=24.31 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHH
Q 026177 42 LVTVLLLFMILNSHQMSSNFLLWIVLG 68 (242)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~f~~w~~~~ 68 (242)
-+.++++|.|++..--.+.|+-|.++=
T Consensus 33 Pivtf~i~Lil~~t~fn~SFf~WvvvY 59 (82)
T PF10852_consen 33 PIVTFAISLILTFTLFNPSFFFWVVVY 59 (82)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 344556777777777889999998753
No 74
>PF10981 DUF2788: Protein of unknown function (DUF2788); InterPro: IPR021249 This bacterial family of proteins have no known function.
Probab=23.73 E-value=67 Score=22.85 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCCCh--------hHHHHHHHHHHHHH
Q 026177 42 LVTVLLLFMILNSHQMSS--------NFLLWIVLGIFLLA 73 (242)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~--------~f~~w~~~~~~~~a 73 (242)
+++.+++||.+..+++.- -|.+|+++|.=+..
T Consensus 2 ~~~~l~~fm~fiI~dl~kks~agkfG~~ilf~vLglG~~G 41 (52)
T PF10981_consen 2 GLGALILFMGFIIWDLAKKSKAGKFGTFILFLVLGLGCAG 41 (52)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 467788888888776542 58899988765443
No 75
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=23.58 E-value=29 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=17.8
Q ss_pred CCcccccccccc-------------cCCceeEEcC-CCCcccc
Q 026177 207 DELTCTVCLEQV-------------NVGEIVRSLP-CLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF-------------~~GE~VR~LP-C~H~FH~ 235 (242)
.-++|+||-... ..+|=+-... |.|.||-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~ 87 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHF 87 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHH
Confidence 446788874322 2334344455 9999994
No 76
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=34 Score=33.40 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCcccccccccccCCceeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
...+|-||.+.+.. .+-.++|+|.|=.
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~ 95 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCP 95 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHH
Confidence 55789999999988 7777889999865
No 77
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=23.10 E-value=1e+02 Score=23.30 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 026177 40 AFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQL 85 (242)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~a~~~r~ya~~~~~ 85 (242)
-|++-++..+.++-+ -.+.+|+.+|+-+- ..|+.|+..
T Consensus 36 G~~~G~~~s~l~frr----R~~pv~lG~G~G~G----~aY~~c~~~ 73 (75)
T PF04418_consen 36 GFGIGVVFSLLFFRR----RAWPVALGAGFGIG----MAYSECQRD 73 (75)
T ss_pred hhhHHHHHHHHHHcc----chHHHHhhcccccc----hhHHHHHHh
Confidence 466667777777777 67788999988764 478999853
No 78
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=22.24 E-value=74 Score=20.97 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=22.2
Q ss_pred ccccccccccCCceeEEcCCCCcccchhhc
Q 026177 210 TCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.|.||-..-..++.|-=--|.-.||.-++.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~ 30 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVG 30 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTST
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCC
Confidence 388998866666666666799999975544
No 79
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.01 E-value=48 Score=24.09 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=18.2
Q ss_pred CCcccccccccccCCceeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
++..|+||.+=+. |-| .+||+|.|=+
T Consensus 3 ~~f~CpIt~~lM~--dPV-i~~~G~tyer 28 (73)
T PF04564_consen 3 DEFLCPITGELMR--DPV-ILPSGHTYER 28 (73)
T ss_dssp GGGB-TTTSSB-S--SEE-EETTSEEEEH
T ss_pred cccCCcCcCcHhh--Cce-eCCcCCEEcH
Confidence 4678999988775 444 4799999986
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.96 E-value=28 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
...+|+.|--..+. .+-.--|+|.||.-|+.
T Consensus 839 q~skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 839 QVSKCSACEGTLDL--PFVHFLCGHSYHQHCLE 869 (933)
T ss_pred eeeeecccCCcccc--ceeeeecccHHHHHhhc
Confidence 44689999443321 23333499999987764
No 81
>PF06390 NESP55: Neuroendocrine-specific golgi protein P55 (NESP55); InterPro: IPR009434 This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins [].
Probab=21.59 E-value=1.2e+02 Score=27.78 Aligned_cols=30 Identities=37% Similarity=0.399 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 026177 59 SNFLLWIVLGIFLLATSLRMYATCQQLHAQ 88 (242)
Q Consensus 59 ~~f~~w~~~~~~~~a~~~r~ya~~~~~q~~ 88 (242)
..-|||+.-.|.|+-.---..|++||-.+|
T Consensus 29 atallwlscsiallrala~s~~raqqra~q 58 (257)
T PF06390_consen 29 ATALLWLSCSIALLRALATSNARAQQRAAQ 58 (257)
T ss_pred HHHHHHHHhHHHHHHHHHhcchHHHHHHHH
Confidence 356899999999876655667788887665
No 82
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.44 E-value=3.9e+02 Score=20.66 Aligned_cols=43 Identities=26% Similarity=0.518 Sum_probs=27.4
Q ss_pred cCcccCCChhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhhHHH
Q 026177 30 AGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMY 79 (242)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~~a~~~r~y 79 (242)
++--|.++...|++.++++|.++. +++|++-.++-+-..++-+
T Consensus 8 ~~~~ie~sl~~~~~~l~~~~~~l~-------ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 8 GGYRIETSLWVALILLLLLFVVLY-------LLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHHH-------HHHHHHHHHHhChHHHHHH
Confidence 445566766667776666666664 3777777776665555444
No 83
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.42 E-value=1.1e+02 Score=29.36 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHH
Q 026177 59 SNFLLWIVLGIFLLA 73 (242)
Q Consensus 59 ~~f~~w~~~~~~~~a 73 (242)
.+=|||+.+|.|+-+
T Consensus 307 nSkLlWFLaG~l~ty 321 (323)
T PHA02688 307 NSKLLWFLAGTLFTY 321 (323)
T ss_pred CchHHHHHHHhHHhe
Confidence 456999999998754
No 84
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=21.25 E-value=37 Score=36.37 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=24.7
Q ss_pred CCCcccccccccccCCceeEEcC-CCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LP-C~H~FH~ 235 (242)
.+..+|.||.+.++.-+-+=.=- |.|.||.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl 219 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHL 219 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhH
Confidence 56789999999999888665544 9999994
No 85
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=21.02 E-value=1e+02 Score=29.54 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHH
Q 026177 59 SNFLLWIVLGIFLLA 73 (242)
Q Consensus 59 ~~f~~w~~~~~~~~a 73 (242)
.+=|||+.+|.++-+
T Consensus 309 nSkllWFLaG~l~ty 323 (325)
T PF03213_consen 309 NSKLLWFLAGILFTY 323 (325)
T ss_pred CchHHHHHHHhHHhe
Confidence 456899999998754
No 86
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.03 E-value=40 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=20.3
Q ss_pred CCCcccccccccccCCce-----eEEcC-CC
Q 026177 206 EDELTCTVCLEQVNVGEI-----VRSLP-CL 230 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~-----VR~LP-C~ 230 (242)
...-.|.+||.+++++|. .|..| |.
T Consensus 52 ~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~ 82 (147)
T KOG1101|consen 52 VKCFFCSGGLDDWEPGDDPWEEHAKWSPECE 82 (147)
T ss_pred eECcccCcccccCCCCCCcHHHHHhhCCCCc
Confidence 456889999999999986 67777 73
Done!