Query 026177
Match_columns 242
No_of_seqs 168 out of 1437
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 07:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.2 1.2E-11 4.2E-16 93.0 5.5 56 151-235 12-67 (91)
2 1x4j_A Ring finger protein 38; 99.0 9.1E-11 3.1E-15 84.6 1.6 49 157-235 2-50 (75)
3 2ect_A Ring finger protein 126 98.5 3.8E-08 1.3E-12 70.9 3.5 31 206-236 13-43 (78)
4 2ep4_A Ring finger protein 24; 98.5 5.4E-08 1.8E-12 69.5 2.8 30 206-235 13-42 (74)
5 1iym_A EL5; ring-H2 finger, ub 98.5 7.2E-08 2.4E-12 64.9 2.8 30 206-235 3-33 (55)
6 2kiz_A E3 ubiquitin-protein li 98.5 8.1E-08 2.8E-12 67.6 3.2 30 206-235 12-41 (69)
7 1v87_A Deltex protein 2; ring- 98.3 1.3E-07 4.3E-12 72.8 1.8 29 207-235 24-67 (114)
8 2ecm_A Ring finger and CHY zin 98.2 6.1E-07 2.1E-11 60.1 2.4 29 207-235 4-33 (55)
9 2ea6_A Ring finger protein 4; 98.1 1.3E-06 4.4E-11 60.7 2.4 30 206-235 13-46 (69)
10 2ct2_A Tripartite motif protei 98.0 3.2E-06 1.1E-10 61.5 3.4 32 206-237 13-45 (88)
11 2d8s_A Cellular modulator of i 98.0 3.4E-06 1.1E-10 62.7 3.3 33 206-239 13-55 (80)
12 3ng2_A RNF4, snurf, ring finge 98.0 2.2E-06 7.5E-11 60.1 1.7 30 206-235 8-41 (71)
13 2ecl_A Ring-box protein 2; RNF 97.9 1.8E-06 6E-11 63.4 0.8 33 207-239 14-63 (81)
14 2ecn_A Ring finger protein 141 97.8 6.9E-06 2.4E-10 57.7 2.6 28 206-237 13-40 (70)
15 3dpl_R Ring-box protein 1; ubi 97.8 5.8E-06 2E-10 64.4 2.3 33 207-239 36-88 (106)
16 2xeu_A Ring finger protein 4; 97.8 3.5E-06 1.2E-10 57.7 0.7 29 207-235 2-34 (64)
17 2d8t_A Dactylidin, ring finger 97.8 9.6E-06 3.3E-10 57.4 2.5 29 206-237 13-41 (71)
18 2ecj_A Tripartite motif-contai 97.7 1.4E-05 4.7E-10 53.8 2.6 27 206-235 13-39 (58)
19 1chc_A Equine herpes virus-1 r 97.7 1.1E-05 3.7E-10 56.3 1.8 28 207-236 4-31 (68)
20 2ysj_A Tripartite motif-contai 97.6 3.6E-05 1.2E-09 53.0 3.6 27 206-235 18-44 (63)
21 2ysl_A Tripartite motif-contai 97.6 4.1E-05 1.4E-09 53.9 3.5 28 206-236 18-45 (73)
22 2csy_A Zinc finger protein 183 97.5 5.4E-05 1.8E-09 54.7 3.4 28 206-236 13-40 (81)
23 2djb_A Polycomb group ring fin 97.5 4.6E-05 1.6E-09 54.0 2.5 28 206-235 13-40 (72)
24 2yur_A Retinoblastoma-binding 97.4 6.6E-05 2.3E-09 53.6 2.8 27 206-235 13-40 (74)
25 2egp_A Tripartite motif-contai 97.4 4.7E-05 1.6E-09 54.2 1.9 30 206-238 10-39 (79)
26 2ecw_A Tripartite motif-contai 97.4 0.00012 4.2E-09 52.3 3.9 29 206-237 17-45 (85)
27 4a0k_B E3 ubiquitin-protein li 97.4 2.6E-05 8.9E-10 62.0 0.2 29 207-235 47-90 (117)
28 1e4u_A Transcriptional repress 97.4 6.1E-05 2.1E-09 55.4 2.1 34 206-239 9-43 (78)
29 2ecv_A Tripartite motif-contai 97.3 0.0001 3.5E-09 52.7 2.6 29 206-237 17-45 (85)
30 1bor_A Transcription factor PM 97.3 9E-05 3.1E-09 50.5 2.0 31 206-239 4-34 (56)
31 1g25_A CDK-activating kinase a 97.2 7.8E-05 2.7E-09 51.7 1.4 31 207-237 2-34 (65)
32 2ecy_A TNF receptor-associated 97.2 0.00013 4.6E-09 50.6 2.6 27 206-235 13-39 (66)
33 1wim_A KIAA0161 protein; ring 97.2 0.00011 3.8E-09 54.8 1.7 32 207-238 4-35 (94)
34 4ayc_A E3 ubiquitin-protein li 97.2 9E-05 3.1E-09 59.1 1.2 28 207-237 52-79 (138)
35 3lrq_A E3 ubiquitin-protein li 97.1 0.00013 4.5E-09 55.2 1.0 29 206-236 20-48 (100)
36 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00016 5.4E-09 55.7 1.2 30 206-235 70-103 (133)
37 2ckl_B Ubiquitin ligase protei 97.0 0.00017 5.9E-09 58.8 1.1 30 206-237 52-81 (165)
38 2ckl_A Polycomb group ring fin 97.0 0.00027 9.2E-09 53.8 2.1 30 206-237 13-42 (108)
39 2y43_A E3 ubiquitin-protein li 97.0 0.00018 6.1E-09 53.8 1.0 30 206-237 20-49 (99)
40 3fl2_A E3 ubiquitin-protein li 96.9 0.00024 8.2E-09 55.3 0.9 30 206-238 50-79 (124)
41 3l11_A E3 ubiquitin-protein li 96.8 0.00029 1E-08 54.0 0.8 30 206-238 13-42 (115)
42 1t1h_A Gspef-atpub14, armadill 96.7 0.00073 2.5E-08 48.1 2.3 27 206-235 6-32 (78)
43 3ztg_A E3 ubiquitin-protein li 96.7 0.00074 2.5E-08 49.5 2.4 29 206-237 11-40 (92)
44 1jm7_A BRCA1, breast cancer ty 96.6 0.00052 1.8E-08 51.8 1.2 28 207-237 20-47 (112)
45 2ecg_A Baculoviral IAP repeat- 96.5 0.00024 8.2E-09 51.0 -1.2 30 206-238 23-53 (75)
46 2ct0_A Non-SMC element 1 homol 96.3 0.0019 6.6E-08 47.3 2.7 33 206-240 13-50 (74)
47 3hct_A TNF receptor-associated 96.2 0.0015 5E-08 50.5 1.6 29 206-237 16-44 (118)
48 1z6u_A NP95-like ring finger p 96.2 0.00095 3.2E-08 54.3 0.3 30 206-238 76-105 (150)
49 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0028 9.7E-08 59.3 2.8 34 206-239 306-349 (381)
50 2ea5_A Cell growth regulator w 96.0 0.0048 1.6E-07 43.8 3.2 30 206-238 13-43 (68)
51 3knv_A TNF receptor-associated 96.0 0.0029 9.9E-08 51.0 2.3 28 206-236 29-56 (141)
52 4ic3_A E3 ubiquitin-protein li 95.9 0.0027 9.1E-08 45.4 1.6 31 206-239 22-53 (74)
53 2y1n_A E3 ubiquitin-protein li 95.9 0.0031 1.1E-07 59.4 2.3 29 207-238 331-359 (389)
54 1jm7_B BARD1, BRCA1-associated 95.7 0.0027 9.2E-08 49.0 1.2 31 206-239 20-51 (117)
55 1rmd_A RAG1; V(D)J recombinati 95.7 0.0021 7.3E-08 49.2 0.3 27 206-235 21-47 (116)
56 2vje_A E3 ubiquitin-protein li 95.2 0.0038 1.3E-07 43.6 0.4 28 206-234 6-33 (64)
57 1vyx_A ORF K3, K3RING; zinc-bi 95.1 0.0076 2.6E-07 42.1 1.7 27 206-235 4-35 (60)
58 2yho_A E3 ubiquitin-protein li 93.4 0.024 8.2E-07 41.2 1.2 30 206-238 16-46 (79)
59 3t6p_A Baculoviral IAP repeat- 93.2 0.04 1.4E-06 50.8 2.7 31 206-239 293-324 (345)
60 1wgm_A Ubiquitin conjugation f 92.7 0.1 3.6E-06 39.3 3.9 27 206-235 20-47 (98)
61 2yu4_A E3 SUMO-protein ligase 90.4 0.15 5E-06 37.8 2.6 28 206-235 5-32 (94)
62 2vje_B MDM4 protein; proto-onc 90.1 0.057 1.9E-06 37.4 -0.0 28 207-235 6-34 (63)
63 2c2l_A CHIP, carboxy terminus 88.4 0.21 7E-06 42.6 2.3 27 206-235 206-232 (281)
64 2jun_A Midline-1; B-BOX, TRIM, 88.0 0.21 7.3E-06 36.9 1.9 30 207-236 2-31 (101)
65 2kr4_A Ubiquitin conjugation f 87.6 0.27 9.3E-06 35.8 2.2 27 206-235 12-38 (85)
66 3htk_C E3 SUMO-protein ligase 86.8 0.3 1E-05 43.8 2.5 28 206-235 179-206 (267)
67 2kre_A Ubiquitin conjugation f 85.1 0.27 9.1E-06 37.2 1.1 27 206-235 27-53 (100)
68 4ap4_A E3 ubiquitin ligase RNF 83.7 0.32 1.1E-05 36.8 1.0 18 218-235 21-38 (133)
69 2f42_A STIP1 homology and U-bo 80.6 0.6 2.1E-05 39.3 1.6 27 206-235 104-130 (179)
70 2ecl_A Ring-box protein 2; RNF 63.3 2.4 8.3E-05 30.1 1.1 9 207-215 25-33 (81)
71 1wil_A KIAA1045 protein; ring 57.6 5.4 0.00018 30.1 2.2 32 206-238 13-44 (89)
72 3nw0_A Non-structural maintena 53.2 4.2 0.00014 35.3 1.1 29 207-237 179-207 (238)
73 2bay_A PRE-mRNA splicing facto 53.1 5.1 0.00017 27.4 1.3 25 209-235 4-28 (61)
74 1we9_A PHD finger family prote 50.9 12 0.00039 25.5 2.9 35 206-240 4-39 (64)
75 1jdm_A Sarcolipin; helix, memb 48.0 10 0.00035 23.1 1.9 22 35-56 9-30 (31)
76 2yt5_A Metal-response element- 41.0 15 0.00053 24.9 2.3 34 206-239 4-39 (66)
77 2lri_C Autoimmune regulator; Z 40.8 19 0.00065 25.1 2.7 31 206-239 10-40 (66)
78 2l9u_A Receptor tyrosine-prote 36.5 35 0.0012 21.7 3.1 19 43-66 14-32 (40)
79 2dj7_A Actin-binding LIM prote 33.4 32 0.0011 24.1 3.0 30 207-238 14-43 (80)
80 1xwh_A Autoimmune regulator; P 33.2 29 0.00099 23.8 2.7 31 206-239 6-36 (66)
81 2lv9_A Histone-lysine N-methyl 29.0 40 0.0014 25.0 3.1 33 207-240 27-59 (98)
82 1f62_A Transcription factor WS 28.7 29 0.00098 22.4 1.9 29 210-238 2-30 (51)
83 2vpb_A Hpygo1, pygopus homolog 27.8 37 0.0013 23.6 2.4 34 206-239 6-41 (65)
84 2xb1_A Pygopus homolog 2, B-ce 27.5 36 0.0012 25.6 2.6 32 209-240 4-37 (105)
85 2dar_A PDZ and LIM domain prot 27.4 61 0.0021 22.8 3.7 29 207-238 24-52 (90)
86 2l5u_A Chromodomain-helicase-D 26.2 45 0.0015 22.5 2.6 31 206-239 9-39 (61)
87 1wee_A PHD finger family prote 25.1 54 0.0018 22.7 3.0 33 207-240 15-48 (72)
88 1wem_A Death associated transc 24.6 69 0.0024 22.3 3.5 31 208-239 16-46 (76)
89 2yql_A PHD finger protein 21A; 24.5 37 0.0013 22.4 1.9 31 206-239 7-37 (56)
90 2ysm_A Myeloid/lymphoid or mix 24.4 47 0.0016 24.7 2.7 34 206-239 5-38 (111)
91 2e6r_A Jumonji/ARID domain-con 24.0 50 0.0017 24.3 2.7 34 206-239 14-47 (92)
92 3mjh_B Early endosome antigen 23.4 10 0.00036 23.6 -1.0 17 207-223 4-20 (34)
93 1wev_A Riken cDNA 1110020M19; 22.6 39 0.0013 24.6 1.8 34 206-239 14-49 (88)
94 2l43_A N-teminal domain from h 22.4 62 0.0021 23.6 2.9 34 206-239 23-58 (88)
95 1wew_A DNA-binding family prot 21.5 89 0.003 22.0 3.6 34 206-240 14-49 (78)
96 2puy_A PHD finger protein 21A; 21.1 54 0.0019 21.8 2.2 30 207-239 4-33 (60)
97 3v43_A Histone acetyltransfera 20.3 48 0.0017 24.9 2.0 32 208-239 5-42 (112)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=93.04 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHhcCCeEEeeccCCCCCCCcccCCCCCCcccccccccccccccCCCCCcccccccccccCCceeEEcCCC
Q 026177 151 PTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCL 230 (242)
Q Consensus 151 ~~~~G~See~I~aLPv~kyk~~~~~~gss~~~~~Ss~~~~e~~~ds~~~~g~~k~~~e~tCsICLEdF~~GE~VR~LPC~ 230 (242)
....|+|++.|++||.++++.... ...++.+|+||+++|..|+.++.|||+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~-----------------------------~~~~~~~C~IC~~~~~~~~~~~~l~C~ 62 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG-----------------------------AVGQEMCCPICCSEYVKGDVATELPCH 62 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS-----------------------------SSSSCSEETTTTEECCTTCEEEEETTT
T ss_pred cCCCCCCHHHHHhCCCeeeccccc-----------------------------ccCCCCCCcccChhhcCCCcEEecCCC
Confidence 445689999999999998876431 114668999999999999999999999
Q ss_pred Ccccc
Q 026177 231 HQQNV 235 (242)
Q Consensus 231 H~FH~ 235 (242)
|.||.
T Consensus 63 H~Fh~ 67 (91)
T 2l0b_A 63 HYFHK 67 (91)
T ss_dssp EEEEH
T ss_pred ChHHH
Confidence 99996
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=9.1e-11 Score=84.59 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=40.7
Q ss_pred CHHHHhcCCeEEeeccCCCCCCCcccCCCCCCcccccccccccccccCCCCCcccccccccccCCceeEEcCCCCcccc
Q 026177 157 SEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 157 See~I~aLPv~kyk~~~~~~gss~~~~~Ss~~~~e~~~ds~~~~g~~k~~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
|++.|++||.++|+.... ..++.+|+||+++|..++.++.|||+|.||.
T Consensus 2 s~~~i~~lp~~~~~~~~~------------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~ 50 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNH------------------------------QSEQTLCVVCMCDFESRQLLRVLPCNHEFHA 50 (75)
T ss_dssp CCCCCSSCCCEEBCSSSC------------------------------SSSCCEETTTTEECCBTCEEEEETTTEEEET
T ss_pred cHhhHhhCCcEEecCccc------------------------------cCCCCCCeECCcccCCCCeEEEECCCCHhHH
Confidence 456788999998875431 1456789999999999999999999999996
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.55 E-value=3.8e-08 Score=70.92 Aligned_cols=31 Identities=42% Similarity=0.707 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccch
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
.++.+|+||++.|..++.++.|||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~ 43 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDS 43 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHH
Confidence 4678999999999999999999999999973
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=5.4e-08 Score=69.46 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||+++|..++.++.|||+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~ 42 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHR 42 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEH
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecH
Confidence 467899999999999999999999999996
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.46 E-value=7.2e-08 Score=64.90 Aligned_cols=30 Identities=40% Similarity=0.808 Sum_probs=27.6
Q ss_pred CCCcccccccccccCCceeEEcC-CCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LP-C~H~FH~ 235 (242)
+++.+|+||+++|+.++.++.|| |+|.||.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 33 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHA 33 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECT
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccH
Confidence 35678999999999999999999 9999997
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=8.1e-08 Score=67.63 Aligned_cols=30 Identities=43% Similarity=0.855 Sum_probs=27.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|..++.++.|||+|.||.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~ 41 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQ 41 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEH
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHH
Confidence 466889999999999999999999999997
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.33 E-value=1.3e-07 Score=72.81 Aligned_cols=29 Identities=28% Similarity=0.635 Sum_probs=24.5
Q ss_pred CCcccccccccccCCc---------------eeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVGE---------------IVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE---------------~VR~LPC~H~FH~ 235 (242)
.+.+|+|||++|..++ .++.+||+|.||.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~ 67 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHL 67 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccH
Confidence 4568999999998764 5678899999996
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.19 E-value=6.1e-07 Score=60.14 Aligned_cols=29 Identities=28% Similarity=0.668 Sum_probs=25.2
Q ss_pred CCcccccccccccCC-ceeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNVG-EIVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~G-E~VR~LPC~H~FH~ 235 (242)
++.+|+||+++|..+ +.++.+||+|.||.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~ 33 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHR 33 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEET
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccH
Confidence 567899999999765 46888999999997
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.3e-06 Score=60.72 Aligned_cols=30 Identities=20% Similarity=0.552 Sum_probs=25.7
Q ss_pred CCCcccccccccccC----CceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~----GE~VR~LPC~H~FH~ 235 (242)
.+..+|+||++.|.+ ++.+..+||+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~ 46 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 46 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEH
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcH
Confidence 467899999999986 456788999999997
No 10
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=3.2e-06 Score=61.53 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=27.6
Q ss_pred CCCcccccccccccCCce-eEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~-VR~LPC~H~FH~wL 237 (242)
.+..+|+||++.|.+++. .+.|||+|.||..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~C 45 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQC 45 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHH
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHH
Confidence 567899999999999885 78899999999733
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=3.4e-06 Score=62.66 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCceeEEcCCC-----Ccccc-----hhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCL-----HQQNV-----WLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~-----H~FH~-----wLls 239 (242)
.++..|.||+++|++++.+ .+||. |.||. ||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~ 55 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKS 55 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHH
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhh
Confidence 4667899999999999887 59996 99996 7653
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.96 E-value=2.2e-06 Score=60.12 Aligned_cols=30 Identities=20% Similarity=0.552 Sum_probs=26.2
Q ss_pred CCCcccccccccccC----CceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~----GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|.+ ++.+..+||+|.||.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~ 41 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 41 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEH
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhH
Confidence 567899999999976 477889999999997
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.8e-06 Score=63.45 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=23.1
Q ss_pred CCcccccccccc-----------cCCceeEEcC-CCCcccc-----hhhc
Q 026177 207 DELTCTVCLEQV-----------NVGEIVRSLP-CLHQQNV-----WLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF-----------~~GE~VR~LP-C~H~FH~-----wLls 239 (242)
++.+|+||+++| ..++.++.|| |+|.||. ||..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 63 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ 63 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh
Confidence 344566666666 4567788887 9999996 6654
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.9e-06 Score=57.70 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.+..+|+||++.+.+ ..+||+|.||..+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~C 40 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKC 40 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHH
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHH
Confidence 467899999999987 7799999999733
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.83 E-value=5.8e-06 Score=64.42 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=26.5
Q ss_pred CCcccccccccccCC-------------c--eeEEcCCCCcccc-----hhhc
Q 026177 207 DELTCTVCLEQVNVG-------------E--IVRSLPCLHQQNV-----WLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~G-------------E--~VR~LPC~H~FH~-----wLls 239 (242)
++.+|+||+++|... + .++.|||+|.||. ||..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc
Confidence 567899999999865 2 4788999999996 7654
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.82 E-value=3.5e-06 Score=57.66 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=24.8
Q ss_pred CCcccccccccccC----CceeEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNV----GEIVRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~----GE~VR~LPC~H~FH~ 235 (242)
++.+|+||++.|.+ ++.+..+||+|.||.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~ 34 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 34 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhH
Confidence 45789999999986 367788999999997
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=9.6e-06 Score=57.44 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+. ..+||+|.||..+
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~C 41 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLC 41 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHH
Confidence 4668999999998653 5679999999733
No 18
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|++. ..|||+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~ 39 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCK 39 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCH
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCH
Confidence 5678999999999865 44899999997
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.71 E-value=1.1e-05 Score=56.26 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred CCcccccccccccCCceeEEcCCCCcccch
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
++.+|+||++.+.+ .+..+||+|.||..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~ 31 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYV 31 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTT
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHH
Confidence 55789999999864 46889999999973
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=3.6e-05 Score=52.98 Aligned_cols=27 Identities=22% Similarity=0.642 Sum_probs=22.8
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|.+ -..|||+|.||.
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~ 44 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCL 44 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECH
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchH
Confidence 577899999999984 345699999997
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=4.1e-05 Score=53.85 Aligned_cols=28 Identities=21% Similarity=0.578 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccch
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
.++.+|+||++.|.+ ...|||+|.||..
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLK 45 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHH
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHH
Confidence 567899999999984 4456999999973
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=5.4e-05 Score=54.73 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccch
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
.+..+|+||++.|.+ . ..+||+|.||..
T Consensus 13 ~~~~~C~IC~~~~~~--p-~~~~CgH~fC~~ 40 (81)
T 2csy_A 13 EIPFRCFICRQAFQN--P-VVTKCRHYFCES 40 (81)
T ss_dssp CCCSBCSSSCSBCCS--E-EECTTSCEEEHH
T ss_pred CCCCCCcCCCchhcC--e-eEccCCCHhHHH
Confidence 466899999999965 3 358999999973
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=4.6e-05 Score=53.98 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|.+ .+...||+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~ 40 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCK 40 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECH
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHH
Confidence 567899999999986 4444599999997
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.43 E-value=6.6e-05 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCceeEEcC-CCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LP-C~H~FH~ 235 (242)
.++.+|+||++.|.+ . ..|| |+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~ 40 (74)
T 2yur_A 13 PDELLCLICKDIMTD--A-VVIPCCGNSYCD 40 (74)
T ss_dssp CGGGSCSSSCCCCTT--C-EECSSSCCEECT
T ss_pred CCCCCCcCCChHHhC--C-eEcCCCCCHHHH
Confidence 567899999999984 2 3499 9999997
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.43 E-value=4.7e-05 Score=54.24 Aligned_cols=30 Identities=33% Similarity=0.580 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.++.+|+||++.|.+- ..|||+|.||..++
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci 39 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACI 39 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHH
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHH
Confidence 5678999999999753 34899999997443
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.40 E-value=0.00012 Score=52.27 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+. ..+||+|.||..+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~C 45 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRAC 45 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHH
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHH
Confidence 4678999999999764 2689999999744
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.39 E-value=2.6e-05 Score=62.02 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=1.1
Q ss_pred CCcccccccccccC-------------Cce--eEEcCCCCcccc
Q 026177 207 DELTCTVCLEQVNV-------------GEI--VRSLPCLHQQNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~-------------GE~--VR~LPC~H~FH~ 235 (242)
++++|+||+++|++ ||. +..+||+|.||.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~ 90 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 90 (117)
T ss_dssp CC------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcH
Confidence 45789999999986 333 344589999996
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.38 E-value=6.1e-05 Score=55.42 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCce-eEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~-VR~LPC~H~FH~wLls 239 (242)
.++.+|+||++.|...|. +.-+||+|.|+.+++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~ 43 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWH 43 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHH
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHH
Confidence 577899999998876543 2224599999987653
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=52.66 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=23.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.+..+|+||++.|.+ ...|||+|.||..+
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~C 45 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQAC 45 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTH
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHH
Confidence 567899999999975 34579999999743
No 30
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.29 E-value=9e-05 Score=50.51 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=25.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.++.+|+||++.|.+ -+.|||+|.|+..++.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~ 34 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLE 34 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHc
Confidence 467899999999985 3679999999986653
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.25 E-value=7.8e-05 Score=51.66 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCcccccccc-cccCCce-eEEcCCCCcccchh
Q 026177 207 DELTCTVCLE-QVNVGEI-VRSLPCLHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLE-dF~~GE~-VR~LPC~H~FH~wL 237 (242)
++.+|+||++ .|..... +..+||+|.||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~C 34 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESC 34 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHH
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHH
Confidence 4578999999 6766653 35689999999743
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00013 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.+.+.-. +||+|.||.
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~ 39 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCE 39 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCCCH
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHHHH
Confidence 567899999999975433 799999997
No 33
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.19 E-value=0.00011 Score=54.78 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
+..+|+||+++|...+.++..||+|.|.+.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl 35 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCL 35 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHH
Confidence 56789999999988888887799999997443
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.17 E-value=9e-05 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=22.6
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
++.+|+||++.|.+ ...|||+|.||..|
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~C 79 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYC 79 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHH
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHH
Confidence 45789999999974 45689999999733
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.06 E-value=0.00013 Score=55.15 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccch
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
.++.+|+||++.|. +.+..+||+|.||..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~ 48 (100)
T 3lrq_A 20 AEVFRCFICMEKLR--DARLCPHCSKLCCFS 48 (100)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTCCEEEHH
T ss_pred CCCCCCccCCcccc--CccccCCCCChhhHH
Confidence 46789999999997 355559999999973
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.03 E-value=0.00016 Score=55.69 Aligned_cols=30 Identities=20% Similarity=0.552 Sum_probs=25.4
Q ss_pred CCCcccccccccccC----CceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~----GE~VR~LPC~H~FH~ 235 (242)
++..+|+||++.|++ +..+..+||+|.||.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 103 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEH
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhH
Confidence 567889999999987 456688899999996
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.98 E-value=0.00017 Score=58.81 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=24.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+ .+..+||+|.||..|
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~C 81 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADC 81 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHH
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHH
Confidence 456799999999985 666679999999733
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.98 E-value=0.00027 Score=53.75 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+ .+..+||+|.||..+
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~C 42 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTC 42 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHH
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHH
Confidence 467899999999974 566569999999733
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.97 E-value=0.00018 Score=53.83 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=23.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+ .+..+||+|.||..+
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~C 49 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQCSHNYCSLC 49 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHH
T ss_pred CCCCCcccCChhhCC--cCEECCCCCHhhHHH
Confidence 456899999999985 444458999999733
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.86 E-value=0.00024 Score=55.30 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=23.4
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.++.+|+||++.|.+ -..+||+|.||..|+
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci 79 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCL 79 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHH
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHH
Confidence 356899999999984 345799999997443
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.77 E-value=0.00029 Score=54.01 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.++.+|+||++.|.. -..|||+|.|+..++
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci 42 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCF 42 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHH
Confidence 456899999999974 455799999997554
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.69 E-value=0.00073 Score=48.10 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=22.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++..|+||++.|.+ - ..+||+|.|++
T Consensus 6 ~~~~~C~IC~~~~~~--P-v~~~CgH~fc~ 32 (78)
T 1t1h_A 6 PEYFRCPISLELMKD--P-VIVSTGQTYER 32 (78)
T ss_dssp SSSSSCTTTSCCCSS--E-EEETTTEEEEH
T ss_pred cccCCCCCccccccC--C-EEcCCCCeecH
Confidence 467899999999974 3 34699999997
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.68 E-value=0.00074 Score=49.54 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceeEEcC-CCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LP-C~H~FH~wL 237 (242)
.++.+|+||++.|.+ -..|| |+|.|+..+
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~C 40 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDEC 40 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHH
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHH
Confidence 577899999999974 34689 999999733
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.61 E-value=0.00052 Score=51.83 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
+..+|+||++.|.+- ..+||+|.||..+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~C 47 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFC 47 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHH
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHH
Confidence 567899999999653 3379999999733
No 45
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.00024 Score=50.96 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCc-ccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-QNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~-FH~wLl 238 (242)
.++.+|+||++.+.+ ...+||+|. |...++
T Consensus 23 ~~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~ 53 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCA 53 (75)
T ss_dssp HHHHSCSSSCSSCCC---BCCSSSCCCCBCHHHH
T ss_pred CCCCCCCcCCCCCCC---EEEecCCCHHHHHHHh
Confidence 456789999998754 556899999 987654
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.32 E-value=0.0019 Score=47.31 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc-----hhhcC
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV-----WLLSV 240 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~-----wLls~ 240 (242)
+...+|+||.+.|..|+... .|+|.||. ||.+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~ 50 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSN 50 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhc
Confidence 45689999999999987665 89999996 77554
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.20 E-value=0.0015 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.++.+|+||++.|.+- ..+||+|.|+..+
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~C 44 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKAC 44 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHH
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHH
Confidence 5678999999999754 4479999999733
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.17 E-value=0.00095 Score=54.35 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.++.+|+||++.|.+- + .+||+|.|+..|+
T Consensus 76 ~~~~~C~IC~~~~~~p--v-~~~CgH~fC~~Ci 105 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP--V-TTECFHNVCKDCL 105 (150)
T ss_dssp HHHTBCTTTSSBCSSE--E-ECTTSCEEEHHHH
T ss_pred ccCCEeecCChhhcCC--E-EcCCCCchhHHHH
Confidence 3568999999999753 3 3899999997443
No 49
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.03 E-value=0.0028 Score=59.30 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCceeE-----EcCCCCcccc-----hhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVR-----SLPCLHQQNV-----WLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR-----~LPC~H~FH~-----wLls 239 (242)
+...+|+||++.+.+++.+- ..+|+|.||. ||.+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs 349 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKT 349 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHh
Confidence 46789999999999944332 3469999996 7765
No 50
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.96 E-value=0.0048 Score=43.78 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCc-ccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-QNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~-FH~wLl 238 (242)
.++..|.||++... .+..|||+|. |-..+.
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~ 43 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCV 43 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETTTTBCCSCTTHH
T ss_pred CCCCCCCCcCcCCC---CEEEECCCChhhhHHHH
Confidence 46788999999765 3778999999 876543
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.0029 Score=51.00 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccch
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
.++.+|+||++.|.+- ..+||+|.|+..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~ 56 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSF 56 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHH
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHH
Confidence 5778999999999765 337999999973
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.88 E-value=0.0027 Score=45.43 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCc-ccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-QNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~-FH~wLls 239 (242)
.++.+|.||++.+.+ ...|||+|. |...++.
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~ 53 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAE 53 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCCBCCCHHHHT
T ss_pred ccCCCCCCCCCCCCC---EEEcCCCChhHHHHhhh
Confidence 456799999998754 556899999 9986653
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.86 E-value=0.0031 Score=59.40 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.1
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
...+|+||++.+++ ...+||+|.||..|+
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci 359 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCL 359 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHH
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHH
Confidence 34799999999854 677999999997443
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.74 E-value=0.0027 Score=48.95 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCceeEEc-CCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSL-PCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~L-PC~H~FH~wLls 239 (242)
.++.+|+||++.|.+ . ..+ ||+|.|+..++.
T Consensus 20 ~~~~~C~IC~~~~~~--p-v~~~~CgH~fC~~Ci~ 51 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE--P-VCLGGCEHIFCSNCVS 51 (117)
T ss_dssp HHTTSCSSSCSCCSS--C-BCCCSSSCCBCTTTGG
T ss_pred hhCCCCCCCChHhhC--c-cEeCCCCCHHHHHHHH
Confidence 467899999999964 3 445 999999985553
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.67 E-value=0.0021 Score=49.17 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++.+|+||++.|.+ .+. +||+|.||.
T Consensus 21 ~~~~~C~IC~~~~~~--p~~-~~CgH~fC~ 47 (116)
T 1rmd_A 21 VKSISCQICEHILAD--PVE-TSCKHLFCR 47 (116)
T ss_dssp HHHTBCTTTCSBCSS--EEE-CTTSCEEEH
T ss_pred cCCCCCCCCCcHhcC--cEE-cCCCCcccH
Confidence 356899999999964 333 899999997
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.22 E-value=0.0038 Score=43.61 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQN 234 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH 234 (242)
+++.+|.||++.+.+. .+..+||+|.++
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~ 33 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMA 33 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEE
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhh
Confidence 4567899999987654 222469999965
No 57
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.15 E-value=0.0076 Score=42.07 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=20.1
Q ss_pred CCCcccccccccccCCceeEEcCCC--C---cccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCL--H---QQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~--H---~FH~ 235 (242)
+++..|.||+++ .++.+ .+||. | .||.
T Consensus 4 ~~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~ 35 (60)
T 1vyx_A 4 EDVPVCWICNEE--LGNER-FRACGCTGELENVHR 35 (60)
T ss_dssp CSCCEETTTTEE--CSCCC-CCSCCCSSGGGSCCH
T ss_pred CCCCEeEEeecC--CCCce-ecCcCCCCchhhhHH
Confidence 466789999998 34555 59964 4 9996
No 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.37 E-value=0.024 Score=41.16 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCc-ccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-QNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~-FH~wLl 238 (242)
.++.+|.||++.+.+ +..+||+|. |=..+.
T Consensus 16 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~ 46 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN---STFCPCGHTVCCESCA 46 (79)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCBCCBCHHHH
T ss_pred CCCCEeEEeCcccCc---EEEECCCCHHHHHHHH
Confidence 355789999987653 667899999 655443
No 59
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=93.19 E-value=0.04 Score=50.79 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=25.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCc-ccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-QNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~-FH~wLls 239 (242)
.++.+|+||++.+.. ...|||+|. |...|+.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~ 324 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAP 324 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGG
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHh
Confidence 466899999999863 566799999 9987764
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=92.68 E-value=0.1 Score=39.35 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCcccccccccccCCceeEEcCCC-Ccccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCL-HQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~-H~FH~ 235 (242)
.++..|+||++-|+ |-|. +||+ |.|-+
T Consensus 20 p~~~~CpI~~~~m~--dPV~-~~cG~htf~r 47 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DPVV-LPSSRVTVDR 47 (98)
T ss_dssp CTTTBCTTTCSBCS--SEEE-CTTTCCEEEH
T ss_pred cHhcCCcCcccccc--CCeE-CCCCCeEECH
Confidence 57789999999887 4554 7999 99996
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.44 E-value=0.15 Score=37.84 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++..|+||++-|+ |-|..-+|+|.|-+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cGh~f~r 32 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCGHTYEE 32 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSCCEEEH
T ss_pred CcEeECcCcCchhc--CCEEcCCCCCeecH
Confidence 46789999999988 46653349999996
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=90.05 E-value=0.057 Score=37.36 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.5
Q ss_pred CCcccccccccccCCceeEEcCCCCc-ccc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQ-QNV 235 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~-FH~ 235 (242)
.+.+|.||++...+- .+-.+||+|. |-.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~ 34 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCF 34 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECH
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHH
Confidence 557899999976543 2233599998 654
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.40 E-value=0.21 Score=42.56 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=22.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.+...|+||++-|. |-| ++||+|.|-+
T Consensus 206 ~~~~~c~i~~~~~~--dPv-~~~~gh~f~~ 232 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPC-ITPSGITYDR 232 (281)
T ss_dssp CSTTBCTTTCSBCS--SEE-ECSSCCEEET
T ss_pred CcccCCcCcCCHhc--CCe-ECCCCCEECH
Confidence 46789999999986 455 4899999997
No 64
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.02 E-value=0.21 Score=36.94 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCcccccccccccCCceeEEcCCCCcccch
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVW 236 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~w 236 (242)
++..|+||+++|...-...-|+|+|.|=..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~ 31 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDE 31 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHH
Confidence 457899999988766666779999998543
No 65
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=87.57 E-value=0.27 Score=35.82 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=22.0
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++..|+||++-|++ -| .+||+|.|-+
T Consensus 12 p~~~~CpI~~~~m~d--PV-~~~cGhtf~r 38 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD--PV-RLPSGTVMDR 38 (85)
T ss_dssp CTTTBCTTTCSBCSS--EE-ECTTSCEEEH
T ss_pred chheECcccCchhcC--Ce-ECCCCCEECH
Confidence 467899999998874 33 4789999986
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=86.78 E-value=0.3 Score=43.81 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
..+.+|+||++-| -|-|+...|+|.|=+
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR 206 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDR 206 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEH
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccH
Confidence 5678999999999 478888899999986
No 67
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=85.11 E-value=0.27 Score=37.18 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++..|+||++-|+ |-| .+||+|.|-+
T Consensus 27 p~~~~CpI~~~~m~--dPV-~~~cGhtf~r 53 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--DPV-RLPSGTIMDR 53 (100)
T ss_dssp STTTBCTTTCSBCS--SEE-EETTTEEEEH
T ss_pred cHhhCCcCccCccc--CCe-ECCCCCEEch
Confidence 56789999999887 344 3789999996
No 68
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.70 E-value=0.32 Score=36.76 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred ccCCceeEEcCCCCcccc
Q 026177 218 VNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 218 F~~GE~VR~LPC~H~FH~ 235 (242)
++.++.+..+||+|.||.
T Consensus 21 ~~~~~~~~~~~CgH~fc~ 38 (133)
T 4ap4_A 21 VQNGRLIVSTECGHVFCS 38 (133)
T ss_dssp HHTTCCEEEETTCCEEEH
T ss_pred cccccCeEecCCCChhhH
Confidence 455778899999999996
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=80.62 E-value=0.6 Score=39.26 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=22.3
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
.++..|+||++-|. |-|. +||+|.|=+
T Consensus 104 p~~f~CPI~~elm~--DPV~-~~~Ghtfer 130 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCI-TPSGITYDR 130 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEE-CTTSCEEEH
T ss_pred cHhhcccCccccCC--CCeE-CCCCCEECH
Confidence 46789999999988 4555 499999986
No 70
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.32 E-value=2.4 Score=30.15 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=6.1
Q ss_pred CCccccccc
Q 026177 207 DELTCTVCL 215 (242)
Q Consensus 207 ~e~tCsICL 215 (242)
-+..|+||+
T Consensus 25 ~~~~C~iC~ 33 (81)
T 2ecl_A 25 VMDACLRCQ 33 (81)
T ss_dssp TTSCCTTHH
T ss_pred hhccCcccc
Confidence 456788875
No 71
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=57.65 E-value=5.4 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
..+..|.|| +.|..++...-=-|.-.||.-+|
T Consensus 13 ~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL 44 (89)
T 1wil_A 13 VNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCL 44 (89)
T ss_dssp CCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHH
T ss_pred CCCcccCcc-ccccccceeccccccccccHhhc
Confidence 466799999 78887776544448999997554
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=53.15 E-value=4.2 Score=35.26 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWL 237 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wL 237 (242)
.-.+|.||-+-...|..... |+|.||.-|
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~--C~~~~H~~C 207 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCET--CGIRMHLPC 207 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSS--SCCEECHHH
T ss_pred CCCcCcchhhHHhCCcccCc--cChHHHHHH
Confidence 46789999999999866654 999999633
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=53.12 E-value=5.1 Score=27.39 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=20.9
Q ss_pred cccccccccccCCceeEEcCCCCcccc
Q 026177 209 LTCTVCLEQVNVGEIVRSLPCLHQQNV 235 (242)
Q Consensus 209 ~tCsICLEdF~~GE~VR~LPC~H~FH~ 235 (242)
..|+||++-++ |-|..-+|+|.|=+
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG~~yer 28 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSRTIFEK 28 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTTEEEEH
T ss_pred EEecCCCCCCC--CCEEeCCCCcEEcH
Confidence 57999999998 56666589999986
No 74
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.93 E-value=12 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=25.4
Q ss_pred CCCcccccccccccCCc-eeEEcCCCCcccchhhcC
Q 026177 206 EDELTCTVCLEQVNVGE-IVRSLPCLHQQNVWLLSV 240 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE-~VR~LPC~H~FH~wLls~ 240 (242)
++...|.||-..+.+++ -|.-=-|..+||.-++.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 45678999999987554 444456999999765543
No 75
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=47.97 E-value=10 Score=23.11 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=17.5
Q ss_pred CCChhHHHHHHHHHHHHHhccC
Q 026177 35 NSNSLAFLVTVLLLFMILNSHQ 56 (242)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (242)
=-|+-..||||+|++.|.-|-|
T Consensus 9 f~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 9 FLNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3477888999999988887765
No 76
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=40.96 E-value=15 Score=24.91 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCcccccccccccC--CceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNV--GEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~--GE~VR~LPC~H~FH~wLls 239 (242)
.++..|.||...... ++.|.---|.-.||..++.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC
Confidence 356789999987543 5666666799999986654
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=40.78 E-value=19 Score=25.14 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.....|.||-+ .|+.|.-=-|...||..+++
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEECHHHHC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCceecccCC
Confidence 34568999974 46766666699999986653
No 78
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=36.45 E-value=35 Score=21.68 Aligned_cols=19 Identities=32% Similarity=0.803 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhccCCChhHHHHHH
Q 026177 43 VTVLLLFMILNSHQMSSNFLLWIV 66 (242)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~f~~w~~ 66 (242)
+...++||||-+ .||-|-.
T Consensus 14 ~gl~vif~~lg~-----tflywrg 32 (40)
T 2l9u_A 14 AGLVVIFMMLGG-----TFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhCc-----eeEEEcc
Confidence 334468999877 6888843
No 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.43 E-value=32 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
....|.-|-+.+..++.|+.+ ...||+.+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF 43 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLAL--DKQWHVSCF 43 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEET--TEEECTTTC
T ss_pred CCCCCcCcCCeeCCCeEEEEC--CcccccccC
Confidence 446788888888878877765 456776543
No 80
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.20 E-value=29 Score=23.83 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
..+..|.||-+. |+.|.-=-|.-.||..++.
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLS 36 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSS
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccC
Confidence 456789999863 6766666699999986654
No 81
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.02 E-value=40 Score=24.99 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhhcC
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLSV 240 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls~ 240 (242)
+...| ||-.....|..|--=-|.-+||..++..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC
Confidence 44566 9988888787777667999999877654
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.74 E-value=29 Score=22.35 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=22.2
Q ss_pred ccccccccccCCceeEEcCCCCcccchhh
Q 026177 210 TCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 210 tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
.|.||-..-..++.|.-=-|...||..++
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl 30 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCL 30 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccC
Confidence 58999876556666766679999998665
No 83
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.76 E-value=37 Score=23.56 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=24.0
Q ss_pred CCCcccccccccccCCcee-EEc-CCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIV-RSL-PCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~V-R~L-PC~H~FH~wLls 239 (242)
+....|.+|...|.+++.. --= -|.-+||..+..
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3557899999999877644 334 699999976554
No 84
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=27.49 E-value=36 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=23.3
Q ss_pred cccccccccccCCce-eEEc-CCCCcccchhhcC
Q 026177 209 LTCTVCLEQVNVGEI-VRSL-PCLHQQNVWLLSV 240 (242)
Q Consensus 209 ~tCsICLEdF~~GE~-VR~L-PC~H~FH~wLls~ 240 (242)
..|.||...|.+++. +.-= -|.-+||..+..+
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVgl 37 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGM 37 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTC
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCc
Confidence 579999999876544 3333 5999999877653
No 85
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.40 E-value=61 Score=22.80 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhh
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLL 238 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLl 238 (242)
....|..|-+.+ .++.|..+ +..||+.+.
T Consensus 24 ~~~~C~~C~~~I-~~~~v~a~--~~~~H~~CF 52 (90)
T 2dar_A 24 RTPMCAHCNQVI-RGPFLVAL--GKSWHPEEF 52 (90)
T ss_dssp CCCBBSSSCCBC-CSCEEEET--TEEECTTTC
T ss_pred CCCCCccCCCEe-cceEEEEC--CccccccCC
Confidence 446799998877 47777654 577886543
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=26.19 E-value=45 Score=22.52 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
..+..|.||-+ .|+.|.-=-|...||..++.
T Consensus 9 ~~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~ 39 (61)
T 2l5u_A 9 DHQDYCEVCQQ---GGEIILCDTCPRAYHMVCLD 39 (61)
T ss_dssp CCCSSCTTTSC---CSSEEECSSSSCEEEHHHHC
T ss_pred CCCCCCccCCC---CCcEEECCCCChhhhhhccC
Confidence 45678999986 36777666799999976654
No 87
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.11 E-value=54 Score=22.71 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCcccccccccccCCc-eeEEcCCCCcccchhhcC
Q 026177 207 DELTCTVCLEQVNVGE-IVRSLPCLHQQNVWLLSV 240 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE-~VR~LPC~H~FH~wLls~ 240 (242)
+...| ||-..+..|+ -|--=-|.-+||..++.+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGI 48 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeecc
Confidence 45678 7988877776 444445999999877654
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.65 E-value=69 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=22.0
Q ss_pred CcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 208 ELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 208 e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
..-| ||-..+..+.-|.---|..+||..++.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 3455 998887655556555699999986654
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=37 Score=22.45 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
..+..|.||-+. |+.|.-=-|...||..++.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSS
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCC
Confidence 456789999863 6766666799999976554
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=24.44 E-value=47 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
..+..|.||.+.=+..+.|.=--|...||..++.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 4667899998763333345555699999987664
No 91
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.03 E-value=50 Score=24.27 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.+...|.||-..-..++.|--=-|...||..++.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 4567899998776555556555699999986654
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.45 E-value=10 Score=23.60 Aligned_cols=17 Identities=12% Similarity=0.604 Sum_probs=12.8
Q ss_pred CCcccccccccccCCce
Q 026177 207 DELTCTVCLEQVNVGEI 223 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~ 223 (242)
+.-.|++|+.++..-+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34789999999876544
No 93
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.60 E-value=39 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCCcccccccccccC--CceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQVNV--GEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF~~--GE~VR~LPC~H~FH~wLls 239 (242)
+.+..|.||...-.. ++.|--=-|...||..++.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 345789999876443 4444444599999987664
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.36 E-value=62 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=23.3
Q ss_pred CCCcccccccccc--cCCceeEEcCCCCcccchhhc
Q 026177 206 EDELTCTVCLEQV--NVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 206 ~~e~tCsICLEdF--~~GE~VR~LPC~H~FH~wLls 239 (242)
+++..|.||.+.- ..++.|.-=-|.-.||..++.
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 4668899998653 333445444599999986664
No 95
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.50 E-value=89 Score=21.98 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCcccccccccccCCceeEEc--CCCCcccchhhcC
Q 026177 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQQNVWLLSV 240 (242)
Q Consensus 206 ~~e~tCsICLEdF~~GE~VR~L--PC~H~FH~wLls~ 240 (242)
.+...| ||-.....|.-|--= -|..+||..+...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcc
Confidence 345667 898876667666655 5999999876643
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.06 E-value=54 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=22.6
Q ss_pred CCcccccccccccCCceeEEcCCCCcccchhhc
Q 026177 207 DELTCTVCLEQVNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 207 ~e~tCsICLEdF~~GE~VR~LPC~H~FH~wLls 239 (242)
.+..|.||-.. |+.|.-=-|.-.||..++.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSS
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCC
Confidence 45789999863 7766666799999986654
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=20.29 E-value=48 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred Cccccccccc------ccCCceeEEcCCCCcccchhhc
Q 026177 208 ELTCTVCLEQ------VNVGEIVRSLPCLHQQNVWLLS 239 (242)
Q Consensus 208 e~tCsICLEd------F~~GE~VR~LPC~H~FH~wLls 239 (242)
...|.+|+.. -+.|+.|.---|...||..++.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4579999976 3445677777799999987764
Done!