Query 026179
Match_columns 242
No_of_seqs 117 out of 164
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11935 DUF3453: Domain of un 100.0 1.5E-39 3.3E-44 286.2 9.7 140 91-242 1-140 (239)
2 KOG1895 mRNA cleavage and poly 99.8 3E-20 6.5E-25 186.8 13.0 180 28-230 2-181 (957)
3 PF05918 API5: Apoptosis inhib 96.6 0.012 2.6E-07 58.0 9.5 115 38-174 51-165 (556)
4 PRK09687 putative lyase; Provi 96.4 0.2 4.3E-06 45.2 15.3 119 45-168 89-218 (280)
5 PF01602 Adaptin_N: Adaptin N 96.2 0.089 1.9E-06 50.4 12.6 98 10-110 81-179 (526)
6 PF01602 Adaptin_N: Adaptin N 96.0 0.15 3.2E-06 48.8 13.0 139 6-169 6-179 (526)
7 COG5096 Vesicle coat complex, 95.7 0.09 1.9E-06 53.6 10.6 106 7-113 88-196 (757)
8 COG5096 Vesicle coat complex, 95.4 0.14 3E-06 52.3 10.7 93 19-113 30-157 (757)
9 PF10363 DUF2435: Protein of u 95.2 0.16 3.6E-06 38.4 8.3 77 47-123 4-87 (92)
10 PTZ00429 beta-adaptin; Provisi 95.1 0.6 1.3E-05 47.9 14.4 128 19-169 43-206 (746)
11 PTZ00429 beta-adaptin; Provisi 94.6 0.42 9.1E-06 49.0 11.9 73 39-111 133-207 (746)
12 PF13646 HEAT_2: HEAT repeats; 94.5 0.09 2E-06 37.9 5.1 56 49-110 2-58 (88)
13 PF12717 Cnd1: non-SMC mitotic 94.5 0.23 5E-06 41.6 8.1 92 60-176 2-97 (178)
14 KOG1058 Vesicle coat complex C 94.4 0.22 4.8E-06 50.6 9.1 99 13-113 25-164 (948)
15 PF12530 DUF3730: Protein of u 94.4 3.2 6.9E-05 36.4 16.1 113 8-122 38-161 (234)
16 PF12348 CLASP_N: CLASP N term 94.4 0.47 1E-05 40.6 10.1 187 9-226 8-210 (228)
17 PF12755 Vac14_Fab1_bd: Vacuol 93.8 0.44 9.5E-06 36.4 7.7 62 42-103 23-88 (97)
18 PF13646 HEAT_2: HEAT repeats; 93.6 0.64 1.4E-05 33.3 8.1 83 12-107 4-87 (88)
19 PF12830 Nipped-B_C: Sister ch 93.3 0.29 6.3E-06 41.5 6.7 70 42-111 4-73 (187)
20 cd00020 ARM Armadillo/beta-cat 93.1 1.1 2.5E-05 33.2 9.1 65 47-111 8-77 (120)
21 PF12717 Cnd1: non-SMC mitotic 92.2 6 0.00013 32.9 13.1 65 12-76 29-93 (178)
22 PF13513 HEAT_EZ: HEAT-like re 92.1 0.45 9.7E-06 31.6 5.1 50 61-110 2-55 (55)
23 PF02985 HEAT: HEAT repeat; I 92.1 0.32 6.9E-06 28.9 3.9 29 84-112 1-29 (31)
24 cd00020 ARM Armadillo/beta-cat 92.0 2 4.4E-05 31.8 9.2 91 20-110 19-118 (120)
25 PRK09687 putative lyase; Provi 91.0 1.6 3.4E-05 39.4 8.9 98 6-110 88-186 (280)
26 KOG1060 Vesicle coat complex A 90.7 3.9 8.4E-05 42.2 11.9 103 40-143 137-239 (968)
27 PF10508 Proteasom_PSMB: Prote 90.5 11 0.00023 36.9 14.8 146 6-171 75-231 (503)
28 KOG2956 CLIP-associating prote 89.8 13 0.00027 36.4 14.2 111 5-115 284-403 (516)
29 PF12348 CLASP_N: CLASP N term 89.3 12 0.00027 31.7 13.0 72 43-114 127-208 (228)
30 KOG2011 Sister chromatid cohes 87.9 4.3 9.4E-05 43.0 10.3 133 25-176 262-401 (1048)
31 PF02985 HEAT: HEAT repeat; I 87.1 1 2.3E-05 26.6 3.4 29 47-75 1-29 (31)
32 PF10274 ParcG: Parkin co-regu 84.7 5.2 0.00011 34.2 7.7 70 41-110 37-107 (183)
33 PF12755 Vac14_Fab1_bd: Vacuol 84.2 15 0.00033 27.8 9.4 73 77-168 21-93 (97)
34 KOG1525 Sister chromatid cohes 83.6 1.8 4E-05 46.8 5.4 126 21-159 313-441 (1266)
35 PF05918 API5: Apoptosis inhib 83.6 10 0.00022 37.8 10.2 132 26-167 2-140 (556)
36 KOG1061 Vesicle coat complex A 83.4 9.4 0.0002 39.0 9.9 133 32-173 107-270 (734)
37 PF10521 DUF2454: Protein of u 83.1 16 0.00034 32.9 10.5 97 43-151 116-230 (282)
38 KOG1020 Sister chromatid cohes 82.3 13 0.00027 41.1 10.8 83 27-109 866-957 (1692)
39 KOG1060 Vesicle coat complex A 81.8 8.5 0.00018 39.8 8.9 102 6-113 37-173 (968)
40 PRK13800 putative oxidoreducta 81.4 21 0.00045 37.5 12.0 49 56-110 817-865 (897)
41 KOG1248 Uncharacterized conser 80.3 73 0.0016 34.5 15.3 146 11-174 700-859 (1176)
42 KOG1059 Vesicle coat complex A 80.1 6.1 0.00013 40.4 7.2 68 40-107 138-205 (877)
43 PF10508 Proteasom_PSMB: Prote 79.7 63 0.0014 31.5 15.7 112 10-123 121-244 (503)
44 PF12765 Cohesin_HEAT: HEAT re 79.4 2 4.4E-05 27.6 2.5 35 36-70 6-42 (42)
45 PF00514 Arm: Armadillo/beta-c 78.2 3.9 8.5E-05 25.4 3.6 28 83-110 12-39 (41)
46 KOG2023 Nuclear transport rece 76.9 16 0.00034 37.4 8.9 72 42-113 170-245 (885)
47 KOG1058 Vesicle coat complex C 74.9 75 0.0016 33.1 13.1 149 10-166 173-341 (948)
48 KOG1062 Vesicle coat complex A 74.8 6 0.00013 40.8 5.5 74 77-172 136-209 (866)
49 PRK13800 putative oxidoreducta 74.5 35 0.00076 35.8 11.4 84 15-110 628-711 (897)
50 KOG2229 Protein required for a 74.2 74 0.0016 31.7 12.5 106 6-112 18-129 (616)
51 COG5218 YCG1 Chromosome conden 71.8 1.2E+02 0.0026 30.9 13.7 145 4-168 8-158 (885)
52 KOG1525 Sister chromatid cohes 69.4 41 0.00088 36.9 10.5 110 45-172 221-330 (1266)
53 PF12830 Nipped-B_C: Sister ch 68.6 44 0.00094 28.1 8.8 64 16-82 16-81 (187)
54 KOG2149 Uncharacterized conser 68.3 95 0.0021 29.7 11.6 125 10-149 61-194 (393)
55 KOG1895 mRNA cleavage and poly 66.2 3.9 8.4E-05 43.0 2.2 95 128-225 18-112 (957)
56 PF04118 Dopey_N: Dopey, N-ter 65.1 67 0.0015 29.6 9.8 101 45-170 96-200 (307)
57 PF09324 DUF1981: Domain of un 64.2 31 0.00067 25.4 6.2 64 45-108 16-84 (86)
58 KOG0915 Uncharacterized conser 64.0 1.1E+02 0.0024 34.3 12.3 123 43-172 1127-1266(1702)
59 PF08167 RIX1: rRNA processing 61.7 71 0.0015 26.3 8.6 121 41-174 20-146 (165)
60 PF13001 Ecm29: Proteasome sta 60.1 72 0.0016 31.2 9.7 94 59-169 387-486 (501)
61 PF04826 Arm_2: Armadillo-like 59.1 1.2E+02 0.0027 26.9 10.2 136 20-159 107-250 (254)
62 KOG1062 Vesicle coat complex A 58.4 1.8E+02 0.0038 30.6 12.1 56 38-93 171-229 (866)
63 smart00185 ARM Armadillo/beta- 57.0 15 0.00034 21.9 3.0 27 84-110 13-39 (41)
64 PF07571 DUF1546: Protein of u 56.9 80 0.0017 23.5 7.5 60 57-116 17-82 (92)
65 KOG1020 Sister chromatid cohes 54.6 1.6E+02 0.0035 33.0 11.6 93 19-112 827-921 (1692)
66 KOG2032 Uncharacterized conser 53.3 2.2E+02 0.0047 28.3 11.3 115 42-176 254-376 (533)
67 KOG2023 Nuclear transport rece 52.8 45 0.00098 34.2 6.8 77 26-102 192-275 (885)
68 KOG0168 Putative ubiquitin fus 52.4 27 0.00059 36.6 5.4 84 24-107 528-624 (1051)
69 PF11698 V-ATPase_H_C: V-ATPas 51.9 91 0.002 24.8 7.3 31 140-171 85-115 (119)
70 PF04510 DUF577: Family of unk 51.4 1.1E+02 0.0023 26.1 7.9 69 44-112 82-164 (174)
71 KOG2549 Transcription initiati 50.2 2.4E+02 0.0053 28.2 11.3 144 20-174 259-425 (576)
72 KOG2259 Uncharacterized conser 49.5 71 0.0015 32.8 7.6 149 57-231 384-539 (823)
73 PF12335 SBF2: Myotubularin pr 49.3 1.5E+02 0.0032 26.2 8.9 92 20-113 18-118 (225)
74 PF12719 Cnd3: Nuclear condens 48.2 1.1E+02 0.0023 27.5 8.2 64 44-107 24-88 (298)
75 cd09246 BRO1_Alix_like_1 Prote 48.1 2E+02 0.0043 26.8 10.1 102 57-169 164-276 (353)
76 KOG1059 Vesicle coat complex A 46.1 77 0.0017 32.8 7.3 128 20-170 193-364 (877)
77 cd09241 BRO1_ScRim20-like Prot 45.3 1.6E+02 0.0034 27.4 9.0 99 58-169 158-266 (355)
78 PF11935 DUF3453: Domain of un 43.7 2.2E+02 0.0048 24.8 9.3 44 72-115 142-189 (239)
79 KOG0212 Uncharacterized conser 42.5 2.6E+02 0.0057 28.3 10.2 98 17-115 345-456 (675)
80 TIGR02270 conserved hypothetic 42.5 1.8E+02 0.004 27.8 9.1 15 57-71 97-111 (410)
81 PF14664 RICTOR_N: Rapamycin-i 42.3 2.1E+02 0.0044 27.0 9.3 60 21-80 81-142 (371)
82 PF07540 NOC3p: Nucleolar comp 42.2 1.2E+02 0.0027 23.0 6.4 52 63-115 5-57 (95)
83 PF11099 M11L: Apoptosis regul 42.2 27 0.00058 29.4 3.0 58 108-173 39-96 (167)
84 KOG3723 PH domain protein Melt 42.0 2.6E+02 0.0057 28.4 10.1 96 20-115 170-273 (851)
85 KOG1824 TATA-binding protein-i 40.7 2.3E+02 0.0051 30.5 9.9 118 43-177 648-771 (1233)
86 KOG0212 Uncharacterized conser 40.2 1.6E+02 0.0035 29.7 8.3 70 32-101 152-226 (675)
87 COG5537 IRR1 Cohesin [Cell div 39.8 4.2E+02 0.0091 27.2 11.2 122 36-174 260-389 (740)
88 PF09424 YqeY: Yqey-like prote 38.5 1.1E+02 0.0023 24.9 6.0 48 42-94 81-128 (143)
89 cd09244 BRO1_Rhophilin Protein 38.1 2.4E+02 0.0051 26.5 8.9 82 54-148 152-243 (350)
90 KOG2025 Chromosome condensatio 37.3 5.1E+02 0.011 27.1 11.6 144 4-169 2-153 (892)
91 PF09280 XPC-binding: XPC-bind 36.2 67 0.0015 22.2 3.8 34 28-66 9-42 (59)
92 PF13720 Acetyltransf_11: Udp 36.1 1.7E+02 0.0037 21.4 6.3 48 22-72 29-76 (83)
93 KOG0168 Putative ubiquitin fus 35.8 5.8E+02 0.012 27.3 12.3 100 1-101 161-292 (1051)
94 PF12530 DUF3730: Protein of u 35.8 2.9E+02 0.0063 23.9 14.3 141 11-170 4-150 (234)
95 PF01603 B56: Protein phosphat 35.4 3.2E+02 0.007 25.9 9.6 80 27-108 236-322 (409)
96 KOG0413 Uncharacterized conser 35.1 56 0.0012 35.1 4.5 80 33-113 956-1036(1529)
97 KOG2171 Karyopherin (importin) 35.1 6.3E+02 0.014 27.5 13.5 22 152-174 170-191 (1075)
98 KOG0211 Protein phosphatase 2A 35.0 2.4E+02 0.0052 29.4 9.1 66 42-107 475-542 (759)
99 KOG0211 Protein phosphatase 2A 34.6 1.9E+02 0.004 30.2 8.2 87 24-110 573-662 (759)
100 KOG1242 Protein containing ada 34.2 1.3E+02 0.0028 30.2 6.7 66 43-109 255-321 (569)
101 KOG1242 Protein containing ada 33.6 1.5E+02 0.0033 29.7 7.2 90 24-114 270-403 (569)
102 KOG2160 Armadillo/beta-catenin 32.9 4E+02 0.0087 25.1 9.4 95 19-113 94-197 (342)
103 KOG1848 Uncharacterized conser 32.8 6.6E+02 0.014 28.3 12.0 110 53-174 1004-1135(1610)
104 KOG3961 Uncharacterized conser 32.2 1.3E+02 0.0027 26.9 5.6 69 42-110 114-182 (262)
105 PLN03200 cellulose synthase-in 31.9 3.9E+02 0.0084 31.3 10.6 108 4-115 10-128 (2102)
106 PF14868 DUF4487: Domain of un 31.9 1.3E+02 0.0028 30.1 6.4 71 40-110 473-550 (559)
107 COG5218 YCG1 Chromosome conden 31.8 3E+02 0.0066 28.2 8.8 85 25-109 67-158 (885)
108 KOG1240 Protein kinase contain 31.5 3.8E+02 0.0083 29.6 9.9 128 4-139 652-787 (1431)
109 PF08713 DNA_alkylation: DNA a 31.4 1.3E+02 0.0028 25.1 5.6 57 46-104 120-176 (213)
110 KOG4653 Uncharacterized conser 31.4 1E+02 0.0022 32.5 5.6 126 46-181 727-860 (982)
111 KOG2259 Uncharacterized conser 31.1 2E+02 0.0043 29.7 7.5 105 51-174 203-319 (823)
112 KOG0166 Karyopherin (importin) 31.0 4.4E+02 0.0094 26.2 9.7 101 10-110 68-179 (514)
113 KOG3678 SARM protein (with ste 30.9 5.3E+02 0.011 25.9 10.1 168 49-225 224-409 (832)
114 cd06561 AlkD_like A new struct 30.2 1.8E+02 0.0039 23.8 6.3 64 49-113 108-171 (197)
115 cd09240 BRO1_Alix Protein-inte 30.2 4.4E+02 0.0096 24.3 11.4 101 56-168 171-283 (346)
116 KOG1061 Vesicle coat complex A 30.1 1.1E+02 0.0024 31.6 5.6 55 40-95 344-398 (734)
117 smart00544 MA3 Domain in DAP-5 30.0 2.4E+02 0.0051 21.1 9.2 66 6-77 2-67 (113)
118 PF04844 Ovate: Transcriptiona 29.6 2E+02 0.0043 20.0 5.6 55 56-113 2-56 (59)
119 KOG1824 TATA-binding protein-i 29.4 5.8E+02 0.013 27.7 10.6 111 4-115 127-245 (1233)
120 KOG1240 Protein kinase contain 28.7 3.1E+02 0.0067 30.3 8.7 83 23-105 438-529 (1431)
121 KOG0414 Chromosome condensatio 28.6 4.1E+02 0.0088 29.2 9.5 93 6-110 329-426 (1251)
122 PF04063 DUF383: Domain of unk 28.5 1.1E+02 0.0023 26.3 4.6 53 26-80 85-137 (192)
123 PF05327 RRN3: RNA polymerase 28.3 6E+02 0.013 25.2 11.2 89 5-94 30-122 (563)
124 cd09243 BRO1_Brox_like Protein 28.0 5.1E+02 0.011 24.3 9.8 99 58-169 168-277 (353)
125 KOG1248 Uncharacterized conser 27.5 6.3E+02 0.014 27.7 10.7 95 8-103 785-889 (1176)
126 KOG1967 DNA repair/transcripti 27.1 3.2E+02 0.007 29.2 8.4 100 8-107 909-1019(1030)
127 PF05055 DUF677: Protein of un 26.4 5.4E+02 0.012 24.0 12.9 59 8-72 14-74 (336)
128 PF02847 MA3: MA3 domain; Int 25.9 2.8E+02 0.006 20.5 9.2 65 6-76 2-66 (113)
129 TIGR02277 PaaX_trns_reg phenyl 25.3 1.2E+02 0.0027 27.3 4.7 74 23-102 204-277 (280)
130 PLN03200 cellulose synthase-in 25.2 7E+02 0.015 29.3 11.1 67 46-112 609-680 (2102)
131 PF04793 Herpes_BBRF1: BRRF1-l 24.3 2.7E+02 0.0058 25.5 6.6 96 5-100 5-117 (284)
132 TIGR02270 conserved hypothetic 24.0 6.4E+02 0.014 24.1 13.1 48 56-110 127-174 (410)
133 KOG1820 Microtubule-associated 23.5 7.7E+02 0.017 26.0 10.4 96 26-123 353-454 (815)
134 KOG0213 Splicing factor 3b, su 23.4 9.2E+02 0.02 25.7 11.0 72 43-114 796-872 (1172)
135 KOG0994 Extracellular matrix g 23.3 1.1E+03 0.023 26.5 13.3 95 80-174 1560-1668(1758)
136 PF06075 DUF936: Plant protein 23.3 2.5E+02 0.0053 28.3 6.7 28 47-74 483-510 (579)
137 PF15290 Syntaphilin: Golgi-lo 23.2 1.8E+02 0.0038 26.7 5.1 44 61-104 93-152 (305)
138 KOG2025 Chromosome condensatio 23.1 6.2E+02 0.013 26.6 9.3 85 27-111 64-154 (892)
139 KOG2171 Karyopherin (importin) 22.4 1E+03 0.023 25.9 14.0 106 9-115 349-464 (1075)
140 PF11701 UNC45-central: Myosin 22.3 1.6E+02 0.0034 24.0 4.4 41 80-120 40-80 (157)
141 KOG2137 Protein kinase [Signal 22.1 5.8E+02 0.013 26.4 9.0 34 77-110 383-416 (700)
142 PRK06926 flagellar motor prote 22.0 5.9E+02 0.013 23.0 11.8 86 68-155 149-238 (271)
143 PF12726 SEN1_N: SEN1 N termin 21.7 8.7E+02 0.019 24.8 13.7 47 29-75 102-149 (727)
144 PRK05685 fliS flagellar protei 21.5 4.1E+02 0.009 21.0 8.7 62 18-90 47-116 (132)
145 PF10151 DUF2359: Uncharacteri 21.4 6.1E+02 0.013 24.9 8.8 89 6-94 104-208 (469)
146 PF14764 SPG48: AP-5 complex s 21.4 4.3E+02 0.0092 25.9 7.6 54 40-93 256-315 (459)
147 PF02561 FliS: Flagellar prote 21.3 3.9E+02 0.0084 20.6 8.1 55 7-72 27-84 (122)
148 KOG4338 Predicted lipoprotein 21.2 8.1E+02 0.017 28.0 10.3 134 27-163 384-551 (1680)
149 PRK13342 recombination factor 21.1 6.6E+02 0.014 23.6 8.9 58 32-89 237-294 (413)
150 PF03097 BRO1: BRO1-like domai 20.9 6.5E+02 0.014 23.0 11.1 134 27-174 130-273 (377)
151 KOG1846 Uncharacterized conser 20.9 1.3E+02 0.0027 32.4 4.1 72 67-146 1191-1270(1777)
152 KOG1789 Endocytosis protein RM 20.5 1.2E+03 0.027 26.1 11.2 135 7-148 2006-2167(2235)
153 KOG2213 Apoptosis inhibitor 5/ 20.3 1.1E+02 0.0024 29.5 3.3 51 41-93 56-106 (460)
154 PF14500 MMS19_N: Dos2-interac 20.1 5.2E+02 0.011 23.0 7.6 60 76-147 201-260 (262)
No 1
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=100.00 E-value=1.5e-39 Score=286.18 Aligned_cols=140 Identities=31% Similarity=0.512 Sum_probs=114.1
Q ss_pred HhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026179 91 FLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (242)
Q Consensus 91 LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (242)
||+|+|+.|+|++|+|++++||.+| +|++. +++++++|++|+++|++|++ +|+++|+|||++|+||+|+||
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~-----~~i~~---~~~~~~~W~~~~~lK~~Il~-~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVF-----RWICV---NPSDEQLWESMNELKDRILS-LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHH-----HHHS-----HHHHHHHHHHHHHHHHHHH-GGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH-----HHHcC---CchHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 6799999999999999999999999 55533 38999999999999999999 799999999999999999999
Q ss_pred hhccCCCCCcccccccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCCCCCeeeeeeccC
Q 026179 171 LLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNWL 242 (242)
Q Consensus 171 l~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~~~~~~~l~~a~in~L 242 (242)
++||++.++++.+.+ +++||||++||+|||+|++++||+||+++||.||++++++. +++++++|++|||
T Consensus 72 l~qs~~~~~~~~~~~--~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~insL 140 (239)
T PF11935_consen 72 LVQSPGSSDSPPRRG--SPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINSL 140 (239)
T ss_dssp HHTS---TTS---GG--GTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHH
T ss_pred HhcCCCCCCCccccc--cccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHH
Confidence 999999887654422 34699999999999999999999999999999999999866 6888999999996
No 2
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=99.83 E-value=3e-20 Score=186.79 Aligned_cols=180 Identities=35% Similarity=0.485 Sum_probs=169.4
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026179 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~ 107 (242)
.|+.+++++..-++.+.++++|++.++..+....+|+++++++++++.++.+++...++++...+.|+ |.|.++.|-++
T Consensus 2 sl~~~~~~l~~~~~~~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~-~~~r~~~i~~~ 80 (957)
T KOG1895|consen 2 SLSYAMHLLIDVSSSISDELLTELLELLELNDGLIRCLLVEILLEIGLKDFELCNKLVETLSPYLEDN-PIVRRQSIIKG 80 (957)
T ss_pred cHHHHHHHHhcccccccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHHHhhhhHHHHhhhhhcCc-hhhHHHHHhhh
Confidence 36778888888899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccC
Q 026179 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEG 187 (242)
Q Consensus 108 ~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~ 187 (242)
+..+|..++++.+++.++++ .++.+.+|.+|..+|++|+. ....|+.|||.++.||+|.+|+..|+
T Consensus 81 ~d~~~s~l~~i~~~~~~~~~-~~~~~s~w~~~~~~k~~i~~-~~~~G~v~vk~~~~~f~~~~i~~~t~------------ 146 (957)
T KOG1895|consen 81 ADVARSNLEPIVLQFLHMEK-NDLAESLWTAFHLFKDRICL-DDHQGTVGVKVLAAKFMEQSILLYTP------------ 146 (957)
T ss_pred hhhhhhccHHHHHHHHhcch-hHHHHHHHHHHHHhHHHHhh-ccccCcchhhhhHHHHHHhhhhhhcc------------
Confidence 99999999999999999999 99999999999999999994 55678999999999999999999995
Q ss_pred CCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhccCC
Q 026179 188 SKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNL 230 (242)
Q Consensus 188 ~~~d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~~~~~~ 230 (242)
.+++|||++++..+..|++..+..||++++.....
T Consensus 147 --------~l~~g~p~l~~~~~~~e~~~~~~~ll~~l~~p~s~ 181 (957)
T KOG1895|consen 147 --------DLARGHPFLSYHKTSSEAEQNLSALLSQLAHPTSQ 181 (957)
T ss_pred --------ccccCCcccccccchHHHHHHHHHHHHHhcCchhh
Confidence 46999999999999999999999999999865543
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.61 E-value=0.012 Score=57.99 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=65.5
Q ss_pred cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026179 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (242)
Q Consensus 38 ~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~ 117 (242)
..-|++-++-++.++++.-|.+..||++.+-=|-.+|+-.+++++++.++|..||..+++..+..+=.++.++|+.==
T Consensus 51 k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-- 128 (556)
T PF05918_consen 51 KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-- 128 (556)
T ss_dssp CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H--
T ss_pred hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--
Confidence 346777777788888887788888888888888788888888888888888888887776555444444444444211
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026179 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
=.+++.+=+.|.. . .++.+.||--++||+..-+..-.
T Consensus 129 ------------------k~tL~~lf~~i~~-~-~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 129 ------------------KGTLTGLFSQIES-S-KSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ------------------HHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ------------------HHHHHHHHHHHHh-c-ccCchHHHHHHHHHHHHHHhhCc
Confidence 1122233334432 1 24667788899999855544443
No 4
>PRK09687 putative lyase; Provisional
Probab=96.38 E-value=0.2 Score=45.25 Aligned_cols=119 Identities=14% Similarity=0.011 Sum_probs=66.4
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh-hHHHHHHHhhhh
Q 026179 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF-FCRVLEEITMQF 122 (242)
Q Consensus 45 ~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l-Y~~~l~~~~~~~ 122 (242)
++.+|-+..+ ..|++.+||+..++.+.+.|.......+.+++.+..++.|+++.|-+.++.+.+.+ -+.++..+. +-
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~-~~ 167 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLI-NL 167 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHH-HH
Confidence 3455555544 45677777777777777776665555566666666667777777777777766543 122222211 11
Q ss_pred hccCCccchHHHHH--HHHHHH-------HHHHHHHhccCCCCchHHHHHHHHhH
Q 026179 123 RWHGKVERWLEELW--TWMVRF-------KDAVFAIALEPGLVGTKLLALKFLET 168 (242)
Q Consensus 123 ~~~~~~~~~~~~~W--~~m~~~-------K~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (242)
. ..+ .+.-..| ..+..+ ...+.. ++++.+..||..|+..+.+
T Consensus 168 L-~d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~-~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 168 L-KDP--NGDVRNWAAFALNSNKYDNPDIREAFVA-MLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred h-cCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHc
Confidence 1 111 1222222 233322 123444 5577788888888877744
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.17 E-value=0.089 Score=50.36 Aligned_cols=98 Identities=23% Similarity=0.305 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH-HHHHH
Q 026179 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-LMPVL 88 (242)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~-~v~~L 88 (242)
+.-+.....+++...+...|+.+-.+. +|++++.++|.|.....|+++.|||-.+--+..+++..++.+.. .++.+
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444444445566556666666665543 78899999999998888999999999999898999999999887 79999
Q ss_pred HHHhcCCChHHHHHHHHhhhhh
Q 026179 89 LAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 89 ~~LL~d~~~~V~K~aI~~~~~l 110 (242)
..+|.|.|+.|+..|+.++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999988888777
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.96 E-value=0.15 Score=48.84 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------- 75 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~---------- 75 (242)
.+++...+++-+ .+..+|.+.++++=-+.+.+++ .+.+++.++.+..+.+.++||-+==++.....
T Consensus 6 ~~el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~ 81 (526)
T PF01602_consen 6 SQELAKILNSFK--IDISKKKEALKKLIYLMMLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILII 81 (526)
T ss_dssp HHHHHHHHHCSS--THHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 445555666555 4666888888887776665543 24777888888767788888877665554321
Q ss_pred -------------------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccc
Q 026179 76 -------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVER 130 (242)
Q Consensus 76 -------------------------~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~ 130 (242)
..++++..+++.+..++.|++|.|-|.|+.|...+|+..= +
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--------------~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--------------D 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--------------C
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--------------H
Confidence 1357888888889999999999999999999999998622 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026179 131 WLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 131 ~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (242)
..+..| -+.+.+ ++.+.+.||+.+|+.++..+
T Consensus 148 ~~~~~~------~~~l~~-lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 LVEDEL------IPKLKQ-LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp CHHGGH------HHHHHH-HTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHhh-hccCCcchhHHHHHHHHHHH
Confidence 111112 333445 55667799999999999877
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.09 Score=53.59 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH-
Q 026179 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL- 84 (242)
Q Consensus 7 ~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~- 84 (242)
++++-.+|.=..- .|..+.+... ..|.+-.=+++++++++++.|.+.-.|+++.|||-.+--+.++...++++.+..
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~-AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGF-ALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 4444444444421 2222444443 355555557888999999999999999999999999999999988888876665
Q ss_pred -HHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 85 -MPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 85 -v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
...+..|+.|+||.|+..|..+...++|.
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777788899999999999999999998
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.14 Score=52.29 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh------------------------
Q 026179 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG------------------------ 74 (242)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~------------------------ 74 (242)
.+...+|++.+++.=--...+++ .+.++|.|+-+-..++.|+||-+=-+++-..
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHH
Confidence 34456899999987766666665 6899999997766888999998866665421
Q ss_pred -----------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 75 -----------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 75 -----------~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
.+.++++..++++++.+++|+++.|-|.|+.|.+.+|+.
T Consensus 108 iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 108 IRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 134689999999999999999999999999999999954
No 9
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.24 E-value=0.16 Score=38.42 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=59.1
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh---hhHHHHHHHHHHHhcCCChHHHHHHHHhhh---hhhHH-HHHHHh
Q 026179 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGT---NFFCR-VLEEIT 119 (242)
Q Consensus 47 ~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~---e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~---~lY~~-~l~~~~ 119 (242)
.+.++++--.|+.+++|-++.-.+.....++. ...+.++..+...|+|+|+-|+=.||++.+ ..||. ++..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 34455555568888999999888888776544 568888888999999999999999999874 55776 776666
Q ss_pred hhhh
Q 026179 120 MQFR 123 (242)
Q Consensus 120 ~~~~ 123 (242)
..+.
T Consensus 84 ~~y~ 87 (92)
T PF10363_consen 84 DEYA 87 (92)
T ss_pred HHHh
Confidence 6553
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=95.13 E-value=0.6 Score=47.91 Aligned_cols=128 Identities=14% Similarity=0.070 Sum_probs=88.1
Q ss_pred CCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------------------
Q 026179 19 HGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------------------- 75 (242)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~---------------------- 75 (242)
..|..+|.+.++++--....+ |- ..+++.|+..-...+.++||.+-=++...+.
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np 119 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSP 119 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCH
Confidence 346668889898887776443 44 5678888877667788999998776654321
Q ss_pred -------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH
Q 026179 76 -------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF 142 (242)
Q Consensus 76 -------------~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~ 142 (242)
+.++++..++..+...+.|.+|.|-|.|+.|...+|+.-=+.+- +..|
T Consensus 120 ~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-------------~~~~------ 180 (746)
T PTZ00429 120 VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-------------QQDF------ 180 (746)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-------------ccch------
Confidence 23466777777888888899999999999999999874221110 1112
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHhHH
Q 026179 143 KDAVFAIALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 143 K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (242)
.+.+.. +++..+.+|..+|+..+..+
T Consensus 181 ~~~L~~-LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 181 KKDLVE-LLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHH-HhcCCCccHHHHHHHHHHHH
Confidence 223334 45678889999998877666
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=94.64 E-value=0.42 Score=48.98 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=57.5
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH--HHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026179 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (242)
Q Consensus 39 ~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~--~~v~~L~~LL~d~~~~V~K~aI~~~~~lY 111 (242)
..|++++.+.+.+...-.|+++.|||-.+==+..+...+++++. ..++.|..||.|.||.|+-.|+.++..+-
T Consensus 133 r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 133 RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 45666666777666666799999999988777777777787754 45778889999999999999988776663
No 12
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.52 E-value=0.09 Score=37.86 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=42.1
Q ss_pred HHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 49 PYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 49 ~~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
|.+++. ..+++..+|...+..+.+.+ -..+++.|..+++|+|+.|...|+.+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445543 36888999999888887443 225677888888999999999988888766
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.48 E-value=0.23 Score=41.56 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026179 60 SLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (242)
Q Consensus 60 ~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (242)
+.+|.=++-.+.+.|.+++.++...++.+...|+|++|.|-|.|+.+.+.+.-.-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------------------------ 57 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------------------------ 57 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------------------------
Confidence 56888888899999999999999999999999999999999999999888754211
Q ss_pred HHHHHH----HHHHhccCCCCchHHHHHHHHhHHhhhccCC
Q 026179 140 VRFKDA----VFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (242)
Q Consensus 140 ~~~K~~----Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~ 176 (242)
.+.|+. ++. .+...|..||-.|..|+..+..-..+.
T Consensus 58 ik~k~~l~~~~l~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 58 IKVKGQLFSRILK-LLVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred eeehhhhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHhccch
Confidence 123333 333 446778899999999999987775433
No 14
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.22 Score=50.57 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=78.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHH----------------h-
Q 026179 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDI----------------G- 74 (242)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~-~~d~~~~vrk~~~~fiee~----------------~- 74 (242)
+.++.-.+|..+|++.++++--+++++++ +|+++-.|+-| -+.++.+++|.+-=|.|-+ |
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~--~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGED--LPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCC--chHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 45556668888999999999999998876 45566666666 3467889999887665432 1
Q ss_pred -----------------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 75 -----------------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 75 -----------------------~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
.+.+|++..++|.++.=|+...+.|-|.||.|..+||+.
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 135789999999999999999999999999999999998
No 15
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.44 E-value=3.2 Score=36.38 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=70.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh--------cC--CchhhHHHHHHHHHHHHhhch
Q 026179 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL--------QS--SPESLVRKSLIETIEDIGLKA 77 (242)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~--------~~--d~~~~vrk~~~~fiee~~~~~ 77 (242)
.+++.|..=...+....+--.++.+-.+.. +++..+ .++..++.+ .. +...+..--.+-=+.++|..+
T Consensus 38 ~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~ 115 (234)
T PF12530_consen 38 PVLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR 115 (234)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC
Confidence 344444443443332223345566666664 555444 344444444 11 222344444556788999999
Q ss_pred hhhHHHHHHHHHHHh-cCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026179 78 MEHSSILMPVLLAFL-RDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (242)
Q Consensus 78 ~e~~~~~v~~L~~LL-~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~ 122 (242)
|++-..++..+...| .+.++.+.--++++.+.+.+.-.-...+.|
T Consensus 116 p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 116 PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999999999 788899999999999888876554444333
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.40 E-value=0.47 Score=40.56 Aligned_cols=187 Identities=15% Similarity=0.176 Sum_probs=103.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHH-------HhhcCCchhhHHHHHHHHHHHHhhc---h
Q 026179 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYL-------VELQSSPESLVRKSLIETIEDIGLK---A 77 (242)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~ll~~~l~~v-------l~~~~d~~~~vrk~~~~fiee~~~~---~ 77 (242)
+...|..-....|=.++.+.|.++|.++.++ .....+.|++.+ ..--.|..+-|-+....++.+++.. +
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3445555344578889999999999999866 223344444433 2223455667888888888887643 2
Q ss_pred -hhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhccCCC
Q 026179 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALEPGL 155 (242)
Q Consensus 78 -~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d~~n 155 (242)
..++..+++.|...+.|....+...|-.|...++..+= ....+ ...+.. ...+.|
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------------------~~~~~~~~~l~~-~~~~Kn 144 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----------------------YSPKILLEILSQ-GLKSKN 144 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------------------H--HHHHHHHHH-HTT-S-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------------------cHHHHHHHHHHH-HHhCCC
Confidence 24688888999999999888777777776665544111 00112 333444 668999
Q ss_pred CchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccc-cccCCCCCCC--ChhhHHHHHHHHHHHHHHHHhh
Q 026179 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNI-SWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQS 226 (242)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl-~~vP~~Hp~l--~~~~Le~Ea~~lL~~LL~~l~~ 226 (242)
..+|..|..++..++..+...... ... ...+ ..+|.-.+.+ .-+...+.|+..|..+-....+
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~---l~~-----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSV---LQK-----SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GG---G-------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHccchHhh---hcc-----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 999999999999888777611110 000 0001 1223333333 2466788888888888777764
No 17
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.76 E-value=0.44 Score=36.38 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=51.7
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHHHHHhcCCChHHHHHH
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKS 103 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~~L~~LL~d~~~~V~K~a 103 (242)
..+++++|.|+..-.|++..||-...+-+..+++.. ..++..+.+.|..+..|.|+.|...|
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 466899999998888999999999999999988643 24688899999999999999876543
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.60 E-value=0.64 Score=33.26 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=53.5
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 026179 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (242)
Q Consensus 12 lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L 91 (242)
|++.....+|...|......+.++ ++ ++.+|.++++-.|+++.||+..+..++.++ -..+++.|..+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 344443567765666555555532 23 466777776667899999999999998764 24466677788
Q ss_pred hcCCC-hHHHHHHHHhh
Q 026179 92 LRDGD-SGVAGKSIVCG 107 (242)
Q Consensus 92 L~d~~-~~V~K~aI~~~ 107 (242)
+.+++ ..|-+.++.+.
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 77654 45555566654
No 19
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.34 E-value=0.29 Score=41.48 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.8
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY 111 (242)
++...|++.|+++..+++..+|....++++-+.++---+=..|+|+|..|..|+++.+-++|......++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998876544444567888999999999999999988877763
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.06 E-value=1.1 Score=33.20 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=49.9
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh----hhHH-HHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026179 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHSS-ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (242)
Q Consensus 47 ~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~----e~~~-~~v~~L~~LL~d~~~~V~K~aI~~~~~lY 111 (242)
.+|.++++-.+.+.++|+..+..+..+|...+ ++.. .+++.+..++.|+++.|.+.++.+.+++-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 55666666556678899999999988886522 2333 77788889999999999999998888874
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.15 E-value=6 Score=32.90 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc
Q 026179 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK 76 (242)
Q Consensus 12 lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~ 76 (242)
.+-.....++...|-..|.-+..|+.+..-..=+.++..++..-.|++.+||.....|+.|...+
T Consensus 29 ~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 29 NLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 33333333444455555555555554322122233333333333455555555555555555444
No 22
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.15 E-value=0.45 Score=31.63 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhh----chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 61 LVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 61 ~vrk~~~~fiee~~~----~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
.||+..+..|.+++. ....+.+.+++.|..+|+|+++.|-..|..|.++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 577777777776442 23458899999999999999999988888877764
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.10 E-value=0.32 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026179 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (242)
Q Consensus 84 ~v~~L~~LL~d~~~~V~K~aI~~~~~lY~ 112 (242)
+++.+..+++|+++.|-+.|+.|.+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888887765
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.98 E-value=2 Score=31.81 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHHHHhcCCC---chHH-hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---hH--HHHHHHHHH
Q 026179 20 GDLAVKLSSLKQVRGILSSADP---SLAA-ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLA 90 (242)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p---~ll~-~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e---~~--~~~v~~L~~ 90 (242)
++...+...+..+..+..+.++ .+.. +++|.++++-.+++..+++..+..+..++...++ .. ..+++.|..
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 3455777888888887753211 2333 7777777776677899999999999998865432 11 235778888
Q ss_pred HhcCCChHHHHHHHHhhhhh
Q 026179 91 FLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 91 LL~d~~~~V~K~aI~~~~~l 110 (242)
++.+.+..+.+.+..+++++
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 88898999999998888775
No 25
>PRK09687 putative lyase; Provisional
Probab=90.95 E-value=1.6 Score=39.45 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=62.3
Q ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026179 6 RDQALSLLAAA-NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (242)
Q Consensus 6 ~~~v~~lln~A-~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (242)
.++++.+|-.. ...+|...+-.....+-++- ...+...+.+++.+.....|.+..||+.++.-+.+++ + ..+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~----~~a 160 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRC-KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--D----EAA 160 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--C----HHH
Confidence 46677777766 44477666766666666653 2333334556665555566777788888877775443 1 235
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 85 v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
++.|..+|+|+|+.|-+.|+.+.+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55677777777777777777777765
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=3.9 Score=42.18 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=74.8
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHh
Q 026179 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEIT 119 (242)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~ 119 (242)
=|.+.|.++-.|=+...|+++.|||-.|.-|-..-.-+++.=..+++.+..||.|.+|.|+-.|+.++..+||.=|+++-
T Consensus 137 vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 137 VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 34455555555556678999999999998887665556666558888999999999999999999999999999997776
Q ss_pred hhhhccCCccchHHHHHHHHHHHH
Q 026179 120 MQFRWHGKVERWLEELWTWMVRFK 143 (242)
Q Consensus 120 ~~~~~~~~~~~~~~~~W~~m~~~K 143 (242)
+.+..-++.=+ +-+-|.....|+
T Consensus 217 knyrklC~ll~-dvdeWgQvvlI~ 239 (968)
T KOG1060|consen 217 KNYRKLCRLLP-DVDEWGQVVLIN 239 (968)
T ss_pred HHHHHHHhhcc-chhhhhHHHHHH
Confidence 55432221111 244576665554
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.49 E-value=11 Score=36.92 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC--chH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p--~ll--~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~ 81 (242)
-.+..+.|.....+++...|...+++++.++-+++. .++ .++++.++..-.+++.+|.+-.+..|..+++...++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 456677888888888877888888888888754432 112 567777776667888888999999988887654433
Q ss_pred HHH-----HHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHH--HHHHHHHHhccCC
Q 026179 82 SIL-----MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPG 154 (242)
Q Consensus 82 ~~~-----v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~--~K~~Il~~~~d~~ 154 (242)
..+ +..|..++...+..+.-|+..++..+.. ..++.++.+.. +-+.+++ -++++
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~------------------~S~~~~~~~~~sgll~~ll~-eL~~d 214 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS------------------HSPEAAEAVVNSGLLDLLLK-ELDSD 214 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh------------------cCHHHHHHHHhccHHHHHHH-HhcCc
Confidence 223 6667777766566665554443333321 12444444443 6666666 44566
Q ss_pred CCchHHHHHHHHhHHhh
Q 026179 155 LVGTKLLALKFLETHVL 171 (242)
Q Consensus 155 n~Gvr~~aiKF~e~vIl 171 (242)
..=+|+.|+..+..+..
T Consensus 215 DiLvqlnalell~~La~ 231 (503)
T PF10508_consen 215 DILVQLNALELLSELAE 231 (503)
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 66678888887776655
No 28
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.84 E-value=13 Score=36.36 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHH----HHhhcCC-chhhHHHHHHHHHHHHhhchhh
Q 026179 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY----LVELQSS-PESLVRKSLIETIEDIGLKAME 79 (242)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~----vl~~~~d-~~~~vrk~~~~fiee~~~~~~e 79 (242)
..+.|.++|++-..+-.+.++=..|.+..+++-++.=++-++++.+ ++|.-.| .+.-.|+-....|+++|...+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4677888998888775556788888889999877765555555555 4566556 5667888888999999975443
Q ss_pred -h---HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHH
Q 026179 80 -H---SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 80 -~---~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l 115 (242)
+ ...++..+..--.|.++.|.+.|.+++..+--..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 2 22222222233358889999999988765544333
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.35 E-value=12 Score=31.66 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=49.6
Q ss_pred hHHhh-hHHHHhhcCCchhhHHHHHHHHHHHHhhchh---------hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026179 43 LAAEL-FPYLVELQSSPESLVRKSLIETIEDIGLKAM---------EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (242)
Q Consensus 43 ll~~~-l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~---------e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~ 112 (242)
+.+.+ ++.+.....++++.+|..+++++..+..+.+ ..+..+++.+..+++|.++.|-+.|-.++..+|.
T Consensus 127 ~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 127 YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 33566 4444445678899999999999988765433 2357789999999999999998888877777766
Q ss_pred HH
Q 026179 113 RV 114 (242)
Q Consensus 113 ~~ 114 (242)
..
T Consensus 207 ~~ 208 (228)
T PF12348_consen 207 HF 208 (228)
T ss_dssp HH
T ss_pred HC
Confidence 53
No 30
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.88 E-value=4.3 Score=43.01 Aligned_cols=133 Identities=19% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcC-C--CchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH---hcCCCh
Q 026179 25 KLSSLKQVRGILSSA-D--PSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDGDS 97 (242)
Q Consensus 25 kl~~L~q~relll~~-~--p~ll~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~~~ 97 (242)
+++.|.+.|....+. + -+++..++.+|.-- =.|-.+++|--+++.|..-+...|+++..-- -|.++ |.|.+.
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~ds-YLKYiGWtLsDk~~ 340 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDS-YLKYIGWTLSDKNG 340 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcch-HHHHhcceeecCcc
Confidence 477777777766432 2 13566666666211 1366789999999999988899998744322 35554 789999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCC
Q 026179 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (242)
Q Consensus 98 ~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~ 176 (242)
.|-++++.+.-.+|-.- ......=.-..+||++|+.+..-..+.|||...++-. ++.-+++
T Consensus 341 ~VRl~~lkaL~~L~e~~---------------~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~---~~~~~~g 401 (1048)
T KOG2011|consen 341 TVRLRCLKALIKLYEKD---------------EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLC---LLLSSSG 401 (1048)
T ss_pred HHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH---HHHhccc
Confidence 99999999988888640 2223333456789999999552388999999988765 4444444
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.13 E-value=1 Score=26.64 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=23.4
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026179 47 LFPYLVELQSSPESLVRKSLIETIEDIGL 75 (242)
Q Consensus 47 ~l~~vl~~~~d~~~~vrk~~~~fiee~~~ 75 (242)
++|.+++.-.|++.+||...+.-+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777778789999999999999887764
No 32
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.73 E-value=5.2 Score=34.15 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=53.1
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 41 PSLAAELFPYLVELQSSPESLVRKSLIETIED-IGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee-~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
..+|+-|++++-|..+.-.---++=+.++++. ...+-.-.+++++..|+.-|+..|+.|.+.+..+.-.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35889999999887655455556666667765 22334457899999999999999999999998888776
No 33
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.20 E-value=15 Score=27.83 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026179 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (242)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (242)
-.+++..+++.+...+.|+|+-|--.|..++.++-+.+= .+.+..+.++=+.+.. .....+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-----------------~~~l~~f~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-----------------GEILPYFNEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH-HHcCCch
Confidence 457888999999999999999998888887766644322 5556677777777777 5455666
Q ss_pred chHHHHHHHHhH
Q 026179 157 GTKLLALKFLET 168 (242)
Q Consensus 157 Gvr~~aiKF~e~ 168 (242)
.||-+| .++-+
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 788877 34443
No 34
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.65 E-value=1.8 Score=46.76 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh---cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCCh
Q 026179 21 DLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL---QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (242)
Q Consensus 21 d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~---~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~ 97 (242)
+.+.++..+......++ .+|+...+.-- .+.+ -.|....+|+.++=-..++-+...++.+.++..+...++|.-.
T Consensus 313 ~~~vR~~~v~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLL-NNPSIAKASTI-LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred ChhhhhhHHHHhHHHHh-cCchhhhHHHH-HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhH
Confidence 34467777777777776 46655422222 2222 2455556666554333333344566766677778888899999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026179 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (242)
Q Consensus 98 ~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (242)
.|-|.||..++.+|..+....+ ......|..+..|++.+|. .++-.+.-.|
T Consensus 391 ~VR~~Am~~LaqlYk~~~~~~~----------~~~k~~t~~~swIp~kLL~-~~y~~~~~~r 441 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKNVYCLRS----------AGGKEITPPFSWIPDKLLH-LYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----------cCcccccccccccchhHHh-hHhhccccHH
Confidence 9999999999999998772222 3357889999999999999 5565556666
No 35
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.60 E-value=10 Score=37.76 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHH
Q 026179 26 LSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (242)
Q Consensus 26 l~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI 104 (242)
++.|.+..+.+-+. |.+-=.+-+-.+|+... .+...++..++||-.-++.-|++...++.++..|.+|+|..|-+.||
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34455555555321 11111234445665443 46789999999999998999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhh------hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHh
Q 026179 105 VCGTNFFCRVLEEITM------QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (242)
Q Consensus 105 ~~~~~lY~~~l~~~~~------~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e 167 (242)
-..-.+.+..=+++.+ |-+. ++-=.-+...|....+ ++..++-|+=..-.+.++
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~--------tdd~~E~~~v~~sL~~-ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQ--------TDDPVELDAVKNSLMS-LLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT-----------HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHh--------cccHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 9988887653322211 2111 1111224455566666 445566666555555553
No 36
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=9.4 Score=39.03 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=88.4
Q ss_pred HHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh--hHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 026179 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME--HSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (242)
Q Consensus 32 ~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e--~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~ 109 (242)
.|.+..=..+.+...+...+.....|..+.+||-++--++.....+++ +-.-.++.|..++.|+||.|+-.|+.+...
T Consensus 107 lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 107 LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 444444455667777778888877888999999998877777666555 456678899999999999999887766544
Q ss_pred hh-------------HHHHHHHhhhhhccCCccchHHHHHHHHHHHHH-------------HHHHH---hccCCCCchHH
Q 026179 110 FF-------------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKD-------------AVFAI---ALEPGLVGTKL 160 (242)
Q Consensus 110 lY-------------~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~-------------~Il~~---~~d~~n~Gvr~ 160 (242)
|- +.+...+-. -.--.-|....-++. +|+.. .+.+.|.+|=+
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvl 257 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVL 257 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEe
Confidence 32 222211110 123455766665552 33332 45789999999
Q ss_pred HHHHHHhHHhhhc
Q 026179 161 LALKFLETHVLLF 173 (242)
Q Consensus 161 ~aiKF~e~vIl~q 173 (242)
.++|++=..+--.
T Consensus 258 savKv~l~~~~~~ 270 (734)
T KOG1061|consen 258 SAVKVILQLVKYL 270 (734)
T ss_pred ehHHHHHHHHHHH
Confidence 9999875444333
No 37
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.06 E-value=16 Score=32.88 Aligned_cols=97 Identities=6% Similarity=-0.057 Sum_probs=63.0
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------chhhhHHHHHHHHHHHhc--------CCChHHHHHHH
Q 026179 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------KAMEHSSILMPVLLAFLR--------DGDSGVAGKSI 104 (242)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~----------~~~e~~~~~v~~L~~LL~--------d~~~~V~K~aI 104 (242)
..+-++|.+|.+--|.+.++|..+...+..... ++..+....-+.|.-.|. ++...++..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 446788888888888899999999998877653 233344444445554444 66778888887
Q ss_pred HhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhc
Q 026179 105 VCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIAL 151 (242)
Q Consensus 105 ~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~ 151 (242)
-|..++|+..+ . . +.....+....-+.+.|++.+.
T Consensus 196 ~~L~~L~~~~~-----~--~-----~~~~r~~~l~~~l~e~IL~~~~ 230 (282)
T PF10521_consen 196 PALLSLLKTQE-----N--D-----DSNPRSTWLDKILREGILSSME 230 (282)
T ss_pred HHHHHHHHhhc-----c--C-----CcccchHHHHHHHHHHHhhhce
Confidence 77777777665 1 1 2233444444555566887443
No 38
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.30 E-value=13 Score=41.07 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhc-------CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH--HHHHHHHHHHhcCCCh
Q 026179 27 SSLKQVRGILSS-------ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--SILMPVLLAFLRDGDS 97 (242)
Q Consensus 27 ~~L~q~relll~-------~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~--~~~v~~L~~LL~d~~~ 97 (242)
++=.++||-+++ -+|+++++|+..+.+=..|...-|||-++-.++++|-..|.+. +.+..-+..-.+||--
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchh
Confidence 344566666553 2899999999999998899999999999999999998766542 2222122222346555
Q ss_pred HHHHHHHHhhhh
Q 026179 98 GVAGKSIVCGTN 109 (242)
Q Consensus 98 ~V~K~aI~~~~~ 109 (242)
.|.|-+-.++..
T Consensus 946 ~I~kLv~etf~k 957 (1692)
T KOG1020|consen 946 NIKKLVRETFLK 957 (1692)
T ss_pred HHHHHHHHHHHH
Confidence 566666555443
No 39
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=8.5 Score=39.80 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHH----HH----H----
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETI----ED----I---- 73 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fi----ee----~---- 73 (242)
++++..+||.= .| .+|++.++..-.++.+..- ..++||.|+---...++||||.|==++ || +
T Consensus 37 ~~dL~~lLdSn---kd-~~KleAmKRIia~iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSN---KD-SLKLEAMKRIIALIAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred hHHHHHHHhcc---cc-HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 56677777642 33 3899999999998875432 478889888766788899999774333 33 0
Q ss_pred --h---h------------------chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 74 --G---L------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 74 --~---~------------------~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
+ . +-+-..+.++-++....+|..|.|-|.|..+..-+|++
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 0 0 12345677777777778899999999999999999975
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.37 E-value=21 Score=37.47 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
.|++..||+..+..|.+++. ...++.|..+|+|+++.|-+.|+.+.+.+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 45566677766666654431 23345666667777777777777776663
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.34 E-value=73 Score=34.49 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=90.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCC----chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc----------
Q 026179 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADP----SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK---------- 76 (242)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p----~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~---------- 76 (242)
+.|-+...+.+.+.|...|+-+.-++ ...| .+.+..+|+++=+..+-+..-|+---+.|-++|..
T Consensus 700 n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~ 778 (1176)
T KOG1248|consen 700 NSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP 778 (1176)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc
Confidence 33444445555556777777666666 3455 78888889988665566667777777777777721
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026179 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (242)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (242)
.++.+...+..+..-+-.+.+.++=..|.+.+.+|-. +- .++ + . +.+.++=+.|.. .+.+.+.
T Consensus 779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---~~--~~l-d-------~---~~l~~li~~V~~-~L~s~sr 841 (1176)
T KOG1248|consen 779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---FK--NIL-D-------D---ETLEKLISMVCL-YLASNSR 841 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---Hh--ccc-c-------H---HHHHHHHHHHHH-HHhcCCH
Confidence 1335666666665554444444433335555554432 21 111 1 1 234455566666 7789999
Q ss_pred chHHHHHHHHhHHhhhcc
Q 026179 157 GTKLLALKFLETHVLLFT 174 (242)
Q Consensus 157 Gvr~~aiKF~e~vIl~qT 174 (242)
-|+-+||+|+-..|..++
T Consensus 842 eI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 842 EIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999988887765
No 42
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=6.1 Score=40.41 Aligned_cols=68 Identities=28% Similarity=0.279 Sum_probs=57.8
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026179 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~ 107 (242)
-|+|...+-+.|+.+-...-+-+||-.+..+-.+|.++||-+..+.+-|..=|+|+||+|+-.|+--.
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VI 205 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVI 205 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHH
Confidence 36777888888877756666789999999999999999999999999999999999999987666533
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=79.70 E-value=63 Score=31.51 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhh-----hHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026179 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAEL-----FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (242)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~-----l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (242)
+.++-.....+|....-...+-++++.- ++.-++.+ ++.+-.+-...+..+|.-+.+++-++++..++.+..+
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3334444455666666667777777773 23222333 5555555444466788889999999998777655444
Q ss_pred H-----HHHHHHhcCCChHHHHHHHHhhhhh--hHHHHHHHhhhhh
Q 026179 85 M-----PVLLAFLRDGDSGVAGKSIVCGTNF--FCRVLEEITMQFR 123 (242)
Q Consensus 85 v-----~~L~~LL~d~~~~V~K~aI~~~~~l--Y~~~l~~~~~~~~ 123 (242)
. +.+...|.++|.-|...++...+.+ ++..++++..+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi 244 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI 244 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH
Confidence 4 4555556788999999999888766 7777766655443
No 44
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.42 E-value=2 Score=27.59 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=26.2
Q ss_pred HhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHH
Q 026179 36 LSSADPSLA--AELFPYLVELQSSPESLVRKSLIETI 70 (242)
Q Consensus 36 ll~~~p~ll--~~~l~~vl~~~~d~~~~vrk~~~~fi 70 (242)
+.+.||+++ +.+...+..--.|+++.||++..++|
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346888877 47777666666788999999988764
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=78.16 E-value=3.9 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 83 ~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
.+++.|..||+++++.|.+.+..+.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3577888999999999999999988876
No 46
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.89 E-value=16 Score=37.39 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=54.4
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh----hHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e----~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
..++-++|+.++|-..+++-+|.-...=+....-..++ ++-+-+++|..|-+|++|.|-|.+..++.-+...
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 45678999999998788888988776655443333333 5777888898888999999999988887665443
No 47
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.93 E-value=75 Score=33.10 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHH
Q 026179 10 LSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (242)
Q Consensus 10 ~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L 88 (242)
-+|++.+... .|. ...+.|-=.+++-||+..=+++-+.++--++-...+.--+++||...|...++.-.+-+..+
T Consensus 173 peLi~~fL~~e~Dp----sCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 173 PELIESFLLTEQDP----SCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHHHHhccCc----hhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 4566666654 443 55677777888889976666666665544455678888899999999998887766666677
Q ss_pred HHHhcCCChHHH-------------HHHHHhhhhhhHHHHHHHhhhhhccCC------ccchHHHHHHHHHHHHHHHHHH
Q 026179 89 LAFLRDGDSGVA-------------GKSIVCGTNFFCRVLEEITMQFRWHGK------VERWLEELWTWMVRFKDAVFAI 149 (242)
Q Consensus 89 ~~LL~d~~~~V~-------------K~aI~~~~~lY~~~l~~~~~~~~~~~~------~~~~~~~~W~~m~~~K~~Il~~ 149 (242)
..+|..++++|+ -.++.++++-|-.++..... .+-+ ........=..|..+--+|++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd---nnvklIvldrl~~l~~~~~~il~~l~mDvLr- 324 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD---NNVKLIVLDRLSELKALHEKILQGLIMDVLR- 324 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC---cchhhhhHHHHHHHhhhhHHHHHHHHHHHHH-
Confidence 777765555443 23344444445443322211 1111 111112223345666677888
Q ss_pred hccCCCCchHHHHHHHH
Q 026179 150 ALEPGLVGTKLLALKFL 166 (242)
Q Consensus 150 ~~d~~n~Gvr~~aiKF~ 166 (242)
.+++.+..||--|+-|.
T Consensus 325 vLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIA 341 (948)
T ss_pred HcCcccccHHHHHHHHH
Confidence 77888888887777664
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.83 E-value=6 Score=40.76 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026179 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (242)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (242)
-+|+++.+.+-+..++...+|.|-|+|++|+..+.|.+=+++- . -..+++..+. ..+.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e--~---------------f~~~~~~lL~-----ek~h 193 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE--H---------------FVIAFRKLLC-----EKHH 193 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH--H---------------hhHHHHHHHh-----hcCC
Confidence 4689999999999999999999999999998776665443331 1 1222333333 3668
Q ss_pred chHHHHHHHHhHHhhh
Q 026179 157 GTKLLALKFLETHVLL 172 (242)
Q Consensus 157 Gvr~~aiKF~e~vIl~ 172 (242)
||-+.+++++.+.+-.
T Consensus 194 GVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 194 GVLIAGLHLITELCKI 209 (866)
T ss_pred ceeeeHHHHHHHHHhc
Confidence 9999988888777655
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.50 E-value=35 Score=35.76 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=47.0
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC
Q 026179 15 AANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (242)
Q Consensus 15 ~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (242)
++...+|...+......+.++ .+ ++.+|.+...-.|++..||.-.++.+.++....+. .+.|..+|.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~---~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~ 695 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTET---TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLGS 695 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhh---cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhcC
Confidence 333345544444444444432 22 34555555555677888888887777766422111 1245556677
Q ss_pred CChHHHHHHHHhhhhh
Q 026179 95 GDSGVAGKSIVCGTNF 110 (242)
Q Consensus 95 ~~~~V~K~aI~~~~~l 110 (242)
+|+.|-..++.++..+
T Consensus 696 ~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 696 PDPVVRAAALDVLRAL 711 (897)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7787777777766544
No 50
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.20 E-value=74 Score=31.65 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----c-hhhh
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----K-AMEH 80 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~----~-~~e~ 80 (242)
+.++.+||..-..+-+. +=.....++=-|+.+++--....+|.-.++++.-.+..+|+++-.-|-...+ + ..+-
T Consensus 18 P~el~dLL~~~~~~lp~-~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPP-ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred hHHHHHHHHhccccCCH-HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 46778888877765332 3345556666677777643333444444445555566679887665544333 2 2233
Q ss_pred HHHHHH-HHHHHhcCCChHHHHHHHHhhhhhhH
Q 026179 81 SSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFC 112 (242)
Q Consensus 81 ~~~~v~-~L~~LL~d~~~~V~K~aI~~~~~lY~ 112 (242)
+.+++. .+..||+++|+.-.|.|.-.+.-+|+
T Consensus 97 lnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 444444 45677899999999999999999998
No 51
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.82 E-value=1.2e+02 Score=30.91 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-chHHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhhchhhh
Q 026179 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-SLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEH 80 (242)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-~ll~~~l~~vl~~~~d~--~~~vrk~~~~fiee~~~~~~e~ 80 (242)
++.+.+...+|.++.. .+-.-..++.+.++.-...= .-....+..+|..-..+ ...+-+|++-|++.--..+|+-
T Consensus 8 ~~~~s~~~if~k~Q~s--~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 8 SSLESMQLIFNKIQQS--SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh
Confidence 5677888899999876 33566777888887732211 11224445555553333 3578899999998777778886
Q ss_pred HHHHHHHHHHHhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCc
Q 026179 81 SSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (242)
Q Consensus 81 ~~~~v~~L~~LL~---d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~G 157 (242)
..-+-+++..+|+ ..|..|-||+.|-.+-+--.+= +-++... +.++..+....+|.+ ..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--------------eIDe~l~---N~L~ekl~~R~~DRE-~~ 147 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--------------EIDEVLA---NGLLEKLSERLFDRE-KA 147 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--------------hHHHHHH---HHHHHHHHHHHhcch-HH
Confidence 6666677888876 4578999998876543322111 2234443 346666666444433 45
Q ss_pred hHHHHHHHHhH
Q 026179 158 TKLLALKFLET 168 (242)
Q Consensus 158 vr~~aiKF~e~ 168 (242)
||+.|+|.+-+
T Consensus 148 VR~eAv~~L~~ 158 (885)
T COG5218 148 VRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 52
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.39 E-value=41 Score=36.87 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=83.3
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 026179 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW 124 (242)
Q Consensus 45 ~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~ 124 (242)
.+|+-.-+-.....-..++...-+.|-+.-...++++..++|-|..=|-.++..+-|.|+-..+-+|..-- .|+.
T Consensus 221 ~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-----~~l~ 295 (1266)
T KOG1525|consen 221 ANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-----SQLS 295 (1266)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-----hhhc
Confidence 45555544322224456777777888888888999999999999888888899999999999998887655 3332
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026179 125 HGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (242)
Q Consensus 125 ~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (242)
+....+|..+.. .+-.....||+.|+++.....+.
T Consensus 296 -----~~~~~~~~~fl~--------r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 296 -----ETYDDLWSAFLG--------RFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred -----ccchHHHHHHHH--------HhccCChhhhhhHHHHhHHHHhc
Confidence 456888987654 55678889999999999887766
No 53
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.61 E-value=44 Score=28.11 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=49.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC--CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH
Q 026179 16 ANNHGDLAVKLSSLKQVRGILSSA--DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (242)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~~--~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~ 82 (242)
....+|...+...+.=++-.+-.+ +| -+.+|.++.+..|++..+|+-....+.+++.|++.++.
T Consensus 16 ~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 444566556666665555555333 77 89999999999999999999999999999999887644
No 54
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=95 Score=29.67 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=79.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH----HhhhHHHHhhcCCchhhHHHHHHHHHHHH----hhch-hhh
Q 026179 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA----AELFPYLVELQSSPESLVRKSLIETIEDI----GLKA-MEH 80 (242)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll----~~~l~~vl~~~~d~~~~vrk~~~~fiee~----~~~~-~e~ 80 (242)
-+||.+-+- .++..+-+.|..+++++.+ +|+.+ .++++.+.+...|.+..||.-...+++.+ |+.+ .-+
T Consensus 61 keLl~qlkH-hNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKH-HNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcC-chHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 456665554 4455788999999999975 88644 47788888889999999999999988884 3334 224
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH
Q 026179 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI 149 (242)
Q Consensus 81 ~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~ 149 (242)
++-.++-+..-+..-.|.|. ..+..|=.++ +.+. .+.+....|.++..+++.|=..
T Consensus 139 ~~l~~~yi~~AMThit~~i~-----~dslkfL~~L---l~~~-----~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQ-----EDSLKFLSLL---LERY-----PDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred HHHHHHHHHHHHhhccHHHH-----HhhHHHHHHH---HHHc-----ChHHHHHHHHHHHHHHHHHHHh
Confidence 55556666665665555543 2222222111 1121 1245677777777777776553
No 55
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=66.18 E-value=3.9 Score=43.00 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=77.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCChh
Q 026179 128 VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPV 207 (242)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~l~~~ 207 (242)
++...+.+|+.+...=..|.. ...+.+.|+++..++|+...|-+.++...|...+++.. -+.+.+..+.+|+-+..+
T Consensus 18 ~~e~~~~l~el~~~~~~~i~~-~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~~~~r~~~--i~~~~d~~~s~l~~i~~~ 94 (957)
T KOG1895|consen 18 SDELLTELLELLELNDGLIRC-LLVEILLEIGLKDFELCNKLVETLSPYLEDNPIVRRQS--IIKGADVARSNLEPIVLQ 94 (957)
T ss_pred cHhHHHHHHHHHhCCcchhhh-hHHHHHhhhhHHHHHhhhhHHHHhhhhhcCchhhHHHH--HhhhhhhhhhccHHHHHH
Confidence 456789999999999999998 77899999999999999999999999877764444332 356777889999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 026179 208 SLTSEANRMLGTLMDLLQ 225 (242)
Q Consensus 208 ~Le~Ea~~lL~~LL~~l~ 225 (242)
-+-.|.+++.+.+=..+.
T Consensus 95 ~~~~~~~~~~~s~w~~~~ 112 (957)
T KOG1895|consen 95 FLHMEKNDLAESLWTAFH 112 (957)
T ss_pred HHhcchhHHHHHHHHHHH
Confidence 988888777766655554
No 56
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=65.11 E-value=67 Score=29.56 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=65.0
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHH---hcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026179 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILMPVLLAF---LRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (242)
Q Consensus 45 ~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~~~~v~~L~~L---L~d~~~~V~K~aI~~~~~lY~~~l~~~~~ 120 (242)
+-+.|++++|-...+..||-.+.+++|.-... .+.+.+.+-+-+..+ |+|++..+..+++...-.++-.+= .
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~----~ 171 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG----D 171 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC----h
Confidence 56778888887788899999999999985532 224444444444444 467888888887776555543211 0
Q ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026179 121 QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (242)
Q Consensus 121 ~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (242)
. ---+..|..+. .+..+|..|++|+.+-.
T Consensus 172 ~--------~F~~~lwl~ii-------------~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 172 K--------YFWQCLWLCII-------------TSPSRRLGALNYLLRRL 200 (307)
T ss_pred h--------HHHHHHHHHHh-------------cCcchhHHHHHHHHHhC
Confidence 0 01233443332 67899999999997654
No 57
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.24 E-value=31 Score=25.43 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=44.7
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh----cCCChHHHHHHHHhhh
Q 026179 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFL----RDGDSGVAGKSIVCGT 108 (242)
Q Consensus 45 ~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL----~d~~~~V~K~aI~~~~ 108 (242)
..||.....+ ...++.++|..+.+-+..+...+.+.+..-++++...+ .|++..+++.|.++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555444 56678899999999998887766665555555555544 4778888888887754
No 58
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.05 E-value=1.1e+02 Score=34.26 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred hHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhchh----hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026179 43 LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAM----EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (242)
Q Consensus 43 ll~~~l~~vl~~~-~d~~~~vrk~~~~fiee~~~~~~----e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~ 117 (242)
.++.+||-+++-+ .+.-.+||||.++.+-+..+... -|++++++.|...+..-.|.|+-....-+.++=-.++|-
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 5567777666543 23456999999999988766543 367777777777766666777766555555555555544
Q ss_pred HhhhhhccCCccchHHHHHHHHHHH------------HHHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026179 118 ITMQFRWHGKVERWLEELWTWMVRF------------KDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (242)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~------------K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (242)
.=.. ++. ...+|+++..+ --+++..+..+.+.|.|+.|.-|+-.+++=
T Consensus 1207 ~R~s-~ak------sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1207 LRAS-AAK------SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred HHHh-hhc------CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 3221 111 24566665544 345556455689999999999999555544
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.72 E-value=71 Score=26.26 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=71.0
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-hhh----HHHHHHHHHHHhc-CCChHHHHHHHHhhhhhhHHH
Q 026179 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEH----SSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRV 114 (242)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~-~e~----~~~~v~~L~~LL~-d~~~~V~K~aI~~~~~lY~~~ 114 (242)
...++.+...+..+-.+++.+-|=.++.++..+|..- .|. ...-+..|...|+ .+++.+.+.+|.+.+.+|..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3466778888877766777777777777777666542 332 2223333344444 456788999999999999765
Q ss_pred HHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026179 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
- ++-- . .-|-.=..+..+=...++ +.+. ..+...|+..+..++..+.
T Consensus 100 ~-----~~p~---l--~Rei~tp~l~~~i~~ll~-l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 100 R-----GKPT---L--TREIATPNLPKFIQSLLQ-LLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred c-----CCCc---h--HHHHhhccHHHHHHHHHH-HHhc--cccHHHHHHHHHHHHHHCC
Confidence 5 2210 0 111112224444444444 2222 6667777777777777665
No 60
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=60.10 E-value=72 Score=31.16 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHH---hcCCChHHH---HHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026179 59 ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDGDSGVA---GKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (242)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~~~~V~---K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~ 132 (242)
+.++|.+.=+-|+.++++.++++..=+..+..| |+++++.|. ..|+.+.+..|+..-+
T Consensus 387 ~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~---------------- 450 (501)
T PF13001_consen 387 DIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD---------------- 450 (501)
T ss_pred cHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc----------------
Confidence 468999999999999988887653333333333 555555443 3333333333433221
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026179 133 EELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 133 ~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (242)
..=.........++....++....+|.+|+||+.++
T Consensus 451 -~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 451 -DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred -chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 000011112222333133456678999999999876
No 61
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=59.08 E-value=1.2e+02 Score=26.92 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=81.7
Q ss_pred CChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-h--hh-hHHHHHHHHHHHhcC
Q 026179 20 GDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-A--ME-HSSILMPVLLAFLRD 94 (242)
Q Consensus 20 ~d~~~kl~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~-~--~e-~~~~~v~~L~~LL~d 94 (242)
-|...|+.-|+-++.+-... +..++.+.+|.++.+-...+..+|-.+...+--.... + .+ +..+++..+..|+..
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 46667888888888886544 3356667788877775566777888887777554322 1 12 244566677777775
Q ss_pred -CChHHHHHHHHhhhhhhHHHHHH--HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026179 95 -GDSGVAGKSIVCGTNFFCRVLEE--ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (242)
Q Consensus 95 -~~~~V~K~aI~~~~~lY~~~l~~--~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (242)
++..++-+++.-+.+|....-.. ++.+|..+- .+.-..+.-...+-+++.+ +.++...-||
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~---~~L~~~~~e~~~~~~~l~~-l~~h~d~ev~ 250 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENIKKEAYVFVQDDFSE---DSLFSLFGESSQLAKKLQA-LANHPDPEVK 250 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhhCcccceeccccCCc---hhHHHHHccHHHHHHHHHH-HHcCCCHHHh
Confidence 47888999999888886644311 111222211 3333555555556666666 3344333344
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=1.8e+02 Score=30.55 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc---hhhhHHHHHHHHHHHhc
Q 026179 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK---AMEHSSILMPVLLAFLR 93 (242)
Q Consensus 38 ~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~---~~e~~~~~v~~L~~LL~ 93 (242)
.|.|++...|++.-..+-.+++.-|=--...++-|+|+. ..++..++++.+...|+
T Consensus 171 rK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk 229 (866)
T KOG1062|consen 171 RKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILK 229 (866)
T ss_pred HcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 478888888888776666666665555566677777776 44455555555555554
No 63
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=57.01 E-value=15 Score=21.90 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 84 ~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
+++.|..++..+++.+++.++.+..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777888888988888887665
No 64
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=56.85 E-value=80 Score=23.54 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=47.3
Q ss_pred CchhhHHHHHHHHHHHHhhc----hhhhHHHHHHHHHHHhcCCC--hHHHHHHHHhhhhhhHHHHH
Q 026179 57 SPESLVRKSLIETIEDIGLK----AMEHSSILMPVLLAFLRDGD--SGVAGKSIVCGTNFFCRVLE 116 (242)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~----~~e~~~~~v~~L~~LL~d~~--~~V~K~aI~~~~~lY~~~l~ 116 (242)
+.+-++|.+-++++..+|++ .+.+-+++..++...+.|++ ..+.=-||.+...+=+.+.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr 82 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVR 82 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999975 46789999999999888764 45666777777777776663
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.62 E-value=1.6e+02 Score=33.01 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCC
Q 026179 19 HGDLAVKLSSLKQVRGILSSADPSLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (242)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~ll--~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~ 96 (242)
.+-.+-+...|+-+-.++ +.||..+ +.+...|-.=-.|.+.-||..+.+++..-...++++..+--+.+..=..|..
T Consensus 827 e~~ialRtkAlKclS~iv-e~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIV-EADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred CchHHHHHHHHHHHHHHH-hcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCc
Confidence 344445667777777777 5898776 3444444333358888999999999998778889998888888888888999
Q ss_pred hHHHHHHHHhhhhhhH
Q 026179 97 SGVAGKSIVCGTNFFC 112 (242)
Q Consensus 97 ~~V~K~aI~~~~~lY~ 112 (242)
..|-||||.-.--+|-
T Consensus 906 vsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICE 921 (1692)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999986655553
No 66
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.35 E-value=2.2e+02 Score=28.28 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=75.5
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHH-HHHHHhcCCChHHHHHHHHhhhhhhHHHHH
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~-~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~ 116 (242)
.++.+++-.+.+=+.|++.-+|.-.+.-|.... .+...|-..+++ .++.|..+.+..|+=.++.|.+-+-+.+-
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~- 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS- 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-
Confidence 477888887777788998888888776555432 122334444443 35566666778888888888877665443
Q ss_pred HHhhhhhccCCccchHHHHHHHHHHHH---HHHHHHhccCCCCchHHHHHHHHhHHhhhccCC
Q 026179 117 EITMQFRWHGKVERWLEELWTWMVRFK---DAVFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (242)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~W~~m~~~K---~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~ 176 (242)
.|+-+.-++ .++.. +|+++++-.|.+++-.....-.+-+++
T Consensus 333 ------------------~~~l~~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 333 ------------------NDDLESYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred ------------------hcchhhhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 333343344 44445 889999999999997666655544433
No 67
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.84 E-value=45 Score=34.23 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCCch---HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHHHHHhcCCChH
Q 026179 26 LSSLKQVRGILSSADPSL---AAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSG 98 (242)
Q Consensus 26 l~~L~q~relll~~~p~l---l~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~~L~~LL~d~~~~ 98 (242)
-+.+.-+-..++-..-++ +|.|+..+..++.|.+++|||.+..-+--..-.+ .-|+..+++-....-.|.|..
T Consensus 192 s~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~ 271 (885)
T KOG2023|consen 192 SHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDEN 271 (885)
T ss_pred HHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchh
Confidence 344444555555443333 3899999999999999999999875433322222 336666666655555677777
Q ss_pred HHHH
Q 026179 99 VAGK 102 (242)
Q Consensus 99 V~K~ 102 (242)
|.=.
T Consensus 272 VALE 275 (885)
T KOG2023|consen 272 VALE 275 (885)
T ss_pred HHHH
Confidence 6533
No 68
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.39 E-value=27 Score=36.57 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=61.1
Q ss_pred HHHHHHH-HHHHHHhcCCCchHHhhhHHHH----hh-cCCchhhHHHHHHHHHHH-HhhchhhhHHHHHH------HHHH
Q 026179 24 VKLSSLK-QVRGILSSADPSLAAELFPYLV----EL-QSSPESLVRKSLIETIED-IGLKAMEHSSILMP------VLLA 90 (242)
Q Consensus 24 ~kl~~L~-q~relll~~~p~ll~~~l~~vl----~~-~~d~~~~vrk~~~~fiee-~~~~~~e~~~~~v~------~L~~ 90 (242)
.+-+.|+ .+|+-++.++|++++.|.-.++ +. .+..++.||.-+..-|.. +++...+++..++. .+..
T Consensus 528 ~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG 607 (1051)
T KOG0168|consen 528 KQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAG 607 (1051)
T ss_pred hhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHh
Confidence 4567788 8999999999998877755444 44 556788999999887776 46677777666554 5677
Q ss_pred HhcCCChHHHHHHHHhh
Q 026179 91 FLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 91 LL~d~~~~V~K~aI~~~ 107 (242)
+|..+|+.|+=-|.|-+
T Consensus 608 ~lsskD~~vlVgALQvA 624 (1051)
T KOG0168|consen 608 MLSSKDLTVLVGALQVA 624 (1051)
T ss_pred hhhcCCCeeEeehHHHH
Confidence 78888877765565544
No 69
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.92 E-value=91 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhHHhh
Q 026179 140 VRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (242)
Q Consensus 140 ~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl 171 (242)
...|.+|.. ++.+.|.-||-.|++-+|.++.
T Consensus 85 lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 85 LGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 348999999 6699999999999999999864
No 70
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=51.43 E-value=1.1e+02 Score=26.09 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhh------------chhhhHHHHHHHHHHHhcCCCh-HHHHHHHHhhhh
Q 026179 44 AAELFPYLVEL-QSSPESLVRKSLIETIEDIGL------------KAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCGTN 109 (242)
Q Consensus 44 l~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~------------~~~e~~~~~v~~L~~LL~d~~~-~V~K~aI~~~~~ 109 (242)
+++++|++... .+..+.+++.|+..|-.-.|. .-.++++.++.+++.+++-+.. ..++++..-+-+
T Consensus 82 ~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~ 161 (174)
T PF04510_consen 82 MENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFES 161 (174)
T ss_pred HHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555555433 233357899999888766552 1246899999999999987655 888887666555
Q ss_pred hhH
Q 026179 110 FFC 112 (242)
Q Consensus 110 lY~ 112 (242)
+.+
T Consensus 162 ~v~ 164 (174)
T PF04510_consen 162 FVS 164 (174)
T ss_pred HHH
Confidence 544
No 71
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.25 E-value=2.4e+02 Score=28.23 Aligned_cols=144 Identities=13% Similarity=-0.011 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhh------c----CCchhhHHHHHHHHHHHHhhc----hhhh
Q 026179 20 GDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVEL------Q----SSPESLVRKSLIETIEDIGLK----AMEH 80 (242)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~-----ll~~~l~~vl~~------~----~d~~~~vrk~~~~fiee~~~~----~~e~ 80 (242)
+|. +.+-.|-++-.-++ ++|+ ++-+++|.++.- . .|..-.+|.|-+.|+..+|+. +..+
T Consensus 259 ~nL-~lL~~lm~m~rSLl-~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L 336 (576)
T KOG2549|consen 259 NNL-ELLIYLMRMVRSLL-DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNL 336 (576)
T ss_pred ccH-HHHHHHHHHHHHHh-cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344 44444444444444 5554 446777777732 1 233458999999999999985 3457
Q ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhcc-CCCC
Q 026179 81 SSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALE-PGLV 156 (242)
Q Consensus 81 ~~~~v~~L~~LL~d~--~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d-~~n~ 156 (242)
-+++..++...+.|. +....=-+|.+..-+=-.+. ..|+. +.....|..+..- -..+.+...+ -++.
T Consensus 337 ~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I----~~~il-----p~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 337 QPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVI----RTVIL-----PNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhh----hheec-----cchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 899999999998876 33444444444443333333 12222 3456666555432 1111221122 3566
Q ss_pred chHHHHHHHHhHHhhhcc
Q 026179 157 GTKLLALKFLETHVLLFT 174 (242)
Q Consensus 157 Gvr~~aiKF~e~vIl~qT 174 (242)
+|+.+-.|-...+|.-+-
T Consensus 408 ~v~~~llk~~~~ii~~~l 425 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKL 425 (576)
T ss_pred hHHHHHHHHhhHHHHhhh
Confidence 788888888777665544
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.46 E-value=71 Score=32.80 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=92.2
Q ss_pred CchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCC-ccchHHHH
Q 026179 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEEL 135 (242)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~-~~~~~~~~ 135 (242)
|.-.|||+-.+.=+.......|.+..++++-|-.+++||...|--.+|-+++.|-... .++.. .+.-.+..
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--------~i~eeql~~il~~L 455 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL--------AIREEQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--------eecHHHHHHHHHHH
Confidence 4456899988776666666789999999999999999999999888888887665431 11110 11223344
Q ss_pred HHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCcc--ccccccCCCCCCCChhhH
Q 026179 136 WTWMVRFKDAVFAIALE----PGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQT--FNISWLSGGHPFLDPVSL 209 (242)
Q Consensus 136 W~~m~~~K~~Il~~~~d----~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d--~sl~~vP~~Hp~l~~~~L 209 (242)
=+.+..++..+.. ++- +.-+++-+|..+.+..+ +.-+.| +++ -.+..+-.|||.+ +
T Consensus 456 ~D~s~dvRe~l~e-lL~~~~~~d~~~i~m~v~~lL~~L----~kyPqD---------rd~i~~cm~~iGqnH~~l----v 517 (823)
T KOG2259|consen 456 EDRSVDVREALRE-LLKNARVSDLECIDMCVAHLLKNL----GKYPQD---------RDEILRCMGRIGQNHRRL----V 517 (823)
T ss_pred HhcCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHh----hhCCCC---------cHHHHHHHHHHhccChhh----H
Confidence 4455566666655 322 44456666655554222 211111 112 2345667889865 5
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 026179 210 TSEANRMLGTLMDLLQSACNLP 231 (242)
Q Consensus 210 e~Ea~~lL~~LL~~l~~~~~~~ 231 (242)
.+-+.++++....+-..++..-
T Consensus 518 ~s~m~rfl~kh~~f~t~e~s~e 539 (823)
T KOG2259|consen 518 LSNMGRFLEKHTSFATIEPSLE 539 (823)
T ss_pred HHHHHHHHHhcccccccCcccc
Confidence 6667788888777777555433
No 73
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=49.34 E-value=1.5e+02 Score=26.18 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh-----hhHHHHHHHHHHHhcC
Q 026179 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-----EHSSILMPVLLAFLRD 94 (242)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~-----e~~~~~v~~L~~LL~d 94 (242)
.+++.+++.|+..-..|+++-..-...++|.++.. =+....|.+++.++..-.+... +-+..++.-+...|.|
T Consensus 18 ~~s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~--lk~~~aR~~~~~~L~~~~~~~k~~L~~~qF~~lv~lin~aLq~ 95 (225)
T PF12335_consen 18 ANSARRLEVLRNCISFIFDNKILEARKSLPAVLRA--LKSRSARQAFCRELSKHVKSNKAVLDDQQFDYLVRLINCALQD 95 (225)
T ss_pred hhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHH
Confidence 46678999999999999988777778889988763 3455789999999988665432 2344455555555654
Q ss_pred ----CChHHHHHHHHhhhhhhHH
Q 026179 95 ----GDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 95 ----~~~~V~K~aI~~~~~lY~~ 113 (242)
+|-.+++...-..+.+||.
T Consensus 96 ~s~~dd~~~Aa~LL~ls~~fyrk 118 (225)
T PF12335_consen 96 CSESDDYGIAAALLPLSTAFYRK 118 (225)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 3567888877788888886
No 74
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=48.17 E-value=1.1e+02 Score=27.50 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026179 44 AAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 44 l~~~l~~vl-~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~ 107 (242)
+.++++.++ +--...+.++|++...-++-.|.-+.++...-++.+...+..+++.|.-.|+++.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346666665 2223455699999999999999888888887777777777555666655555443
No 75
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=48.09 E-value=2e+02 Score=26.78 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=66.1
Q ss_pred CchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHH
Q 026179 57 SPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (242)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~ 134 (242)
.++.++..-+.+++...|.-..|- ..+++.. +..+..+.|-+. -.+.+|..+.+.+. .+...+....
T Consensus 164 ~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~-----~~k~sliAKLa~-qv~~~Y~~a~~~l~-----~~~~~~~~~~ 232 (353)
T cd09246 164 FRTPDLTAECLGMLESLMLAQAQECFYEKAVAD-----GKSPAVCSKLAK-QARSYYEEALEALD-----SPPLKGHFDK 232 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHH-HHHHHHHHHHHHHh-----cccccccccH
Confidence 456677777888888877654442 2222210 223455566665 45679999995442 2223344578
Q ss_pred HHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026179 135 LWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 135 ~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (242)
.|..+..+|...+.- ..+.+..|..++..+..+..
T Consensus 233 ~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 276 (353)
T cd09246 233 SWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDA 276 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHH
Confidence 999999999888652 22567899999999988763
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.07 E-value=77 Score=32.82 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhc-------------C--CchhhHHHHHHHHHHHHh------
Q 026179 20 GDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQ-------------S--SPESLVRKSLIETIEDIG------ 74 (242)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~-------------~--d~~~~vrk~~~~fiee~~------ 74 (242)
+|-..+-...+=.=||+ .++|. |.|.||.=+..-. . .-.+.++|-+++=|.+.-
T Consensus 193 pDp~V~SAAV~VICELA-rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELA-RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM 271 (877)
T ss_pred CCchHHHHHHHHHHHHH-hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH
Confidence 55545555566666777 58883 6688877332111 1 114566776665444421
Q ss_pred -------------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026179 75 -------------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (242)
Q Consensus 75 -------------------~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (242)
..+..-+..|+.-|+.+++|.|+..-=-+..|++- +++. ..
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K--------I~kt------------Hp 331 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK--------ILKT------------HP 331 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH--------Hhhh------------CH
Confidence 01334466778888888888888765444444332 2222 12
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026179 136 WTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (242)
Q Consensus 136 W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (242)
..+.+.|+-|++ .++...+.||+-|+-.+...|
T Consensus 332 -~~Vqa~kdlIlr-cL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 332 -KAVQAHKDLILR-CLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -HHHHHhHHHHHH-HhccCCchhHHHHHHHHHHHh
Confidence 246778999999 779999999999998876655
No 77
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=45.33 E-value=1.6e+02 Score=27.42 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHH
Q 026179 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELW 136 (242)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d-~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W 136 (242)
++.++..-+.+++...|.-.-|-+- ........ .+..+.|-+.++ +.+|..+++.+- .+ +.....|
T Consensus 158 ~s~Dl~~~~l~~L~~lmLAQAQE~~----~~Kai~~~~k~sliAKLa~qv-~~~Y~~a~~~l~-----~~---~~i~~~W 224 (355)
T cd09241 158 PPPDLDENTLKALESLMLAQAQECF----WQKAISDGTKDSLIAKLAAQV-SDYYQEALKYAN-----KS---DLIRSDW 224 (355)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHh-----cC---CcccHHH
Confidence 6667777777888777764433221 01111122 345556666665 789999994442 22 4457899
Q ss_pred HHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026179 137 TWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 137 ~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (242)
..+..+|...+.- ..+.+..|..++..|.....
T Consensus 225 ~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 225 INHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999888642 22457889999988877664
No 78
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=43.68 E-value=2.2e+02 Score=24.85 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHhhchhhhHHHHHHHHHHHhcCC----ChHHHHHHHHhhhhhhHHHH
Q 026179 72 DIGLKAMEHSSILMPVLLAFLRDG----DSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 72 e~~~~~~e~~~~~v~~L~~LL~d~----~~~V~K~aI~~~~~lY~~~l 115 (242)
-+.+++|++.++++++|..+-.+. .+...|..+.+.--.||..|
T Consensus 142 ~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 142 NIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 344678888888888888775544 45556666677777777777
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.48 E-value=2.6e+02 Score=28.30 Aligned_cols=98 Identities=9% Similarity=0.129 Sum_probs=63.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-hHHHHHHHHHHH
Q 026179 17 NNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILMPVLLAF 91 (242)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e-~~~~~v~~L~~L 91 (242)
........|+..|+=..-+. ++.|+ ..+++++.++..-+|++.+|=-...+.+..+|..... +..+.+..|..+
T Consensus 345 l~~~~~~tri~~L~Wi~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 345 LSDDREETRIAVLNWIILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred hhcchHHHHHHHHHHHHHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 33445567888998888776 68885 3488889888777899988888888899999875433 344444445555
Q ss_pred hcCCCh-------HHHHHH--HHhhhhhhHHHH
Q 026179 92 LRDGDS-------GVAGKS--IVCGTNFFCRVL 115 (242)
Q Consensus 92 L~d~~~-------~V~K~a--I~~~~~lY~~~l 115 (242)
...+.. -++|+- ..-+..+|+..-
T Consensus 424 f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 424 FKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 444333 333332 223466777644
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.45 E-value=1.8e+02 Score=27.78 Aligned_cols=15 Identities=0% Similarity=-0.044 Sum_probs=6.3
Q ss_pred CchhhHHHHHHHHHH
Q 026179 57 SPESLVRKSLIETIE 71 (242)
Q Consensus 57 d~~~~vrk~~~~fie 71 (242)
|++..||.-+++-+.
T Consensus 97 d~~~~vr~aaa~ALg 111 (410)
T TIGR02270 97 AGPEGLCAGIQAALG 111 (410)
T ss_pred CCCHHHHHHHHHHHh
Confidence 333344444444443
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.31 E-value=2.1e+02 Score=27.02 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHHhcC-CCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026179 21 DLAVKLSSLKQVRGILSSA-DPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (242)
Q Consensus 21 d~~~kl~~L~q~relll~~-~p~-ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~ 80 (242)
...||.+.|+=+|.++.-+ .|. +-..++-.++..+.+++..+|.-+.+.+.|++..+|++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 3459999999999999653 453 44677778888887888899999999999998766654
No 82
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=42.20 E-value=1.2e+02 Score=22.97 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCC-ChHHHHHHHHhhhhhhHHHH
Q 026179 63 RKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 63 rk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~-~~~V~K~aI~~~~~lY~~~l 115 (242)
|..+|.+...+.. +||--...+..|..+..+. +..|.|-|+.+...+|+-+.
T Consensus 5 K~~IA~l~~~ile-~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIi 57 (95)
T PF07540_consen 5 KEEIASLASSILE-DPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDII 57 (95)
T ss_pred HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcC
Confidence 3444444444433 5554444567788888888 89999999999999887655
No 83
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=42.18 E-value=27 Score=29.44 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhc
Q 026179 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (242)
Q Consensus 108 ~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (242)
-.=|+.=|..+|..--. + ..+. ....+|..|...+.+....|||++++-|+..++=-.
T Consensus 39 ~~~Y~~d~n~mcd~i~~-~-----~~S~--~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~ 96 (167)
T PF11099_consen 39 KNDYKRDFNSMCDIIEA-N-----DISY--NIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKW 96 (167)
T ss_dssp HHHTHHHHHHHHHHHHC-C-----CCTT---HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHhc-c-----cccc--cHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHH
Confidence 44577778777763221 1 1111 566789999885656777999999999998876433
No 84
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=42.04 E-value=2.6e+02 Score=28.44 Aligned_cols=96 Identities=21% Similarity=0.133 Sum_probs=55.1
Q ss_pred CChHHHHH---HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCC
Q 026179 20 GDLAVKLS---SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (242)
Q Consensus 20 ~d~~~kl~---~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~ 96 (242)
.+..++++ -|-++--.+-+..|..+.-++|.+..+-....++=+-.+-.+.--|..+.++.+.+++|.|..-+.|.+
T Consensus 170 v~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 44555665 233444444467777666666666655334443333333333334556788999999999998887765
Q ss_pred h-----HHHHHHHHhhhhhhHHHH
Q 026179 97 S-----GVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 97 ~-----~V~K~aI~~~~~lY~~~l 115 (242)
. .+.|..-+-.-..-+..|
T Consensus 250 ~~~i~~~Ilk~ia~~~pv~l~~~~ 273 (851)
T KOG3723|consen 250 HNDIILNILKEIAVYEPVALNSFL 273 (851)
T ss_pred chhHHHHHHHHHHhcCccchhhHH
Confidence 3 445555554444444433
No 85
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=40.72 E-value=2.3e+02 Score=30.48 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=73.8
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026179 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-----KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (242)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~-----~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~ 117 (242)
.+.+++|++..|--...-.+|--...++.+..+ ...+.+..++.-+..|+.+.|-.|...++.+.+.+...-.
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p-- 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP-- 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 345666666665433333455555555555433 2345677777778888888888888888877765543211
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHhHHhhhccCCC
Q 026179 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-GLVGTKLLALKFLETHVLLFTSDS 177 (242)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~-~n~Gvr~~aiKF~e~vIl~qT~~~ 177 (242)
...-..++.+=+.|+.++..+ -..|.--++.+|.|..|..+.++-
T Consensus 726 ---------------s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l 771 (1233)
T KOG1824|consen 726 ---------------SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL 771 (1233)
T ss_pred ---------------HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc
Confidence 223344555777777744332 346778889999999888887653
No 86
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=1.6e+02 Score=29.75 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=51.4
Q ss_pred HHHHHhcCCCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCChHHHH
Q 026179 32 VRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVAG 101 (242)
Q Consensus 32 ~relll~~~p~-ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~~~~V~K 101 (242)
.++.+.+.+++ =+++|+|=+=+--...++..|.|+++.|--.- ...-.|++..++-|..+|.|+.+.|..
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 45666666654 35888885545556678899999999996542 233467999999999999999987763
No 87
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=39.85 E-value=4.2e+02 Score=27.17 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=66.0
Q ss_pred HhcCCCchHHhhhHHHHh--h-c--CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH---HhcCCChHHHHHHHHhh
Q 026179 36 LSSADPSLAAELFPYLVE--L-Q--SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA---FLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 36 ll~~~p~ll~~~l~~vl~--~-~--~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~---LL~d~~~~V~K~aI~~~ 107 (242)
+...+|+++..++..+.. | . .|-+.-+|--..-=+..-|.-.|+++.+.. -+++ +|.|...+|-+.+..
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~-~lry~GW~LSDn~~~vRl~v~K-- 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL-GLRYNGWSLSDNHEGVRLLVSK-- 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh-cccccccccccchHHHHHHHHH--
Confidence 334578775444444332 1 1 244444554444333333445566655544 2333 356777766655432
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026179 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 108 ~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
+-+ ++|-+ + +.-...=.-+..+|++|+.+..-..+. ||+|++|-++..=.+-.
T Consensus 337 --il~----~L~s~-~------p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~ 389 (740)
T COG5537 337 --ILL----FLCSR-I------PHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGV 389 (740)
T ss_pred --HHH----HHHhc-C------CcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcc
Confidence 222 22221 1 111255567788999999955444444 99999999887655544
No 88
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=38.49 E-value=1.1e+02 Score=24.91 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=32.0
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcC
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (242)
.++.+|||.- =...+++.++.++|++++...+....+++..+..-+..
T Consensus 81 ~iL~~yLP~~-----lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G 128 (143)
T PF09424_consen 81 EILEEYLPKQ-----LSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKG 128 (143)
T ss_dssp HHHGGGS----------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCC-----CCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 3556777752 23558999999999999877777788888888765553
No 89
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=38.10 E-value=2.4e+02 Score=26.48 Aligned_cols=82 Identities=15% Similarity=0.258 Sum_probs=51.5
Q ss_pred hcCCchhhHHHHHHHHHHHHhhch-hhh-HHHHHHHHHHHhcCC---ChH-----HHHHHHHhhhhhhHHHHHHHhhhhh
Q 026179 54 LQSSPESLVRKSLIETIEDIGLKA-MEH-SSILMPVLLAFLRDG---DSG-----VAGKSIVCGTNFFCRVLEEITMQFR 123 (242)
Q Consensus 54 ~~~d~~~~vrk~~~~fiee~~~~~-~e~-~~~~v~~L~~LL~d~---~~~-----V~K~aI~~~~~lY~~~l~~~~~~~~ 123 (242)
|.+.++.++..-+.+++...|.-. .|. ..++ +.|. +.. +.|-|.++ +.+|..+.+.+
T Consensus 152 ~~~~ps~Dls~~~L~~L~~LmLAQAQEc~~~Ka-------i~d~~~k~~~~~~~~lAklA~qv-~~~Y~~a~~~~----- 218 (350)
T cd09244 152 FSNAPSMDLSPEMLEALIKLMLAQAQECVFEKL-------VLPGEDSKDIQACLDLAQEAAQV-SDCYSEVHKLM----- 218 (350)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HhccccccchhHHHHHHHHHHHH-HHHHHHHHHHH-----
Confidence 444566677777777777766533 332 2211 1122 222 67888888 89999999443
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHH
Q 026179 124 WHGKVERWLEELWTWMVRFKDAVFA 148 (242)
Q Consensus 124 ~~~~~~~~~~~~W~~m~~~K~~Il~ 148 (242)
..+.+.......|..+..+|...+.
T Consensus 219 ~~~~~~~~i~~~W~~~v~~K~~~f~ 243 (350)
T cd09244 219 NQEPVKDYIPYSWISLVEVKSEHYK 243 (350)
T ss_pred hccccccccCHHHHHHHHHHHHHHH
Confidence 2333445567899999999988764
No 90
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.29 E-value=5.1e+02 Score=27.15 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhH---HHHhhc--CCchhhHHHHHHHHHHHHhhchh
Q 026179 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP---YLVELQ--SSPESLVRKSLIETIEDIGLKAM 78 (242)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~---~vl~~~--~d~~~~vrk~~~~fiee~~~~~~ 78 (242)
++.+++.+..|.++.+ ++.-=...+++++|+.- ...|-.+|+. .++..- ......+=+|++-|++..--.++
T Consensus 2 ~~~~r~~~If~k~Q~s-~agh~~kl~~k~~em~t--~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~ 78 (892)
T KOG2025|consen 2 SSLERMQLIFNKIQQS-DAGHYSKLLAKVMEMLT--AHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK 78 (892)
T ss_pred hHHHHHHHHHHHHHhh-hcchHHHHHHHHHHhhh--HhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc
Confidence 4678888889988875 21112456777887762 2233344444 222221 12234788999999987664444
Q ss_pred hhHHHHHHHHHHHhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 026179 79 EHSSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (242)
Q Consensus 79 e~~~~~v~~L~~LL~---d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n 155 (242)
+.= -+-+++..+|+ ..|-.|-+|+.|-.+ .+.+.. + .-++.. ++.++..++..+.| .-
T Consensus 79 e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila----~l~d~~-------~---eidd~v---fn~l~e~l~~Rl~D-re 139 (892)
T KOG2025|consen 79 EED-LVAGTFYHLLRGTESKDKKVRFRVLQILA----LLSDEN-------A---EIDDDV---FNKLNEKLLIRLKD-RE 139 (892)
T ss_pred hhh-HHHHHHHHHHhcccCcchhHHHHHHHHHH----HHhccc-------c---ccCHHH---HHHHHHHHHHHHhc-cC
Confidence 321 22234555555 457788888776433 333211 1 113333 45577788874444 45
Q ss_pred CchHHHHHHHHhHH
Q 026179 156 VGTKLLALKFLETH 169 (242)
Q Consensus 156 ~Gvr~~aiKF~e~v 169 (242)
..||+.|++-+.+.
T Consensus 140 p~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 140 PNVRIQAVLALSRL 153 (892)
T ss_pred chHHHHHHHHHHHH
Confidence 57999999888664
No 91
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=36.19 E-value=67 Score=22.23 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHH
Q 026179 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSL 66 (242)
Q Consensus 28 ~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~ 66 (242)
++.+.|+++ ..+|++++.++..+ ...++.+.+.+
T Consensus 9 qf~~lR~~v-q~NP~lL~~lLqql----~~~nP~l~q~I 42 (59)
T PF09280_consen 9 QFQQLRQLV-QQNPQLLPPLLQQL----GQSNPQLLQLI 42 (59)
T ss_dssp HHHHHHHHH-HC-GGGHHHHHHHH----HCCSHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHH----hccCHHHHHHH
Confidence 567788888 59998777777765 23445544443
No 92
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=36.10 E-value=1.7e+02 Score=21.36 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026179 22 LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (242)
Q Consensus 22 ~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee 72 (242)
..+.+..|++|..++.. .+..+.+.+.++.+-. ..+++ -+.+++||+.
T Consensus 29 s~~~i~~l~~ayr~l~~-~~~~~~~a~~~l~~~~-~~~~~-v~~~~~Fi~~ 76 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR-SGLTLEEALEELEEEY-PDSPE-VREIVDFIRN 76 (83)
T ss_dssp -HHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHT-TSCHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhc-cCCHH-HHHHHHHHHh
Confidence 34799999999999985 4467778888876522 22444 4456688863
No 93
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.82 E-value=5.8e+02 Score=27.32 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=65.6
Q ss_pred CccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-----chHHhhhHHHHhhcC-CchhhHH----HHHHHHH
Q 026179 1 MAAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-----SLAAELFPYLVELQS-SPESLVR----KSLIETI 70 (242)
Q Consensus 1 m~~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-----~ll~~~l~~vl~~~~-d~~~~vr----k~~~~fi 70 (242)
|..+++.++-.||..-..++|-..|++.|.+.=|++.-.+- -..+.++|.++.+-. ..+.++- |-++.++
T Consensus 161 ~~~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 161 IGSSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC 240 (1051)
T ss_pred ccccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34566779999999999998988999999999998875432 245778888877743 3333332 2222222
Q ss_pred HHHhh----------------------chhhhHHHHHHHHHHHhcCCChHHHH
Q 026179 71 EDIGL----------------------KAMEHSSILMPVLLAFLRDGDSGVAG 101 (242)
Q Consensus 71 ee~~~----------------------~~~e~~~~~v~~L~~LL~d~~~~V~K 101 (242)
|+|. .+.+++.+++.+|.++-++...+++|
T Consensus 241 -evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~ 292 (1051)
T KOG0168|consen 241 -EVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ 292 (1051)
T ss_pred -hhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh
Confidence 3331 13456777777887777776654443
No 94
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.79 E-value=2.9e+02 Score=23.92 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=89.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Q 026179 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (242)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~ 90 (242)
.|+..+....+..-+...|+-+-++.-+++ ...+-++.-+..+...+..+++-+....+..+.++.+-+.+.+-+.+..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLL 82 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 345555566777789999999999998887 6667777777676666666666666666666666555443322222222
Q ss_pred H-hc-----CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 026179 91 F-LR-----DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALK 164 (242)
Q Consensus 91 L-L~-----d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiK 164 (242)
+ ++ -++..-...-|.+++++.+.+- . ..+.|.-|...=+.+++ ++.++.++-.|+.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~-----~----------~p~~g~~ll~~ls~~L~---~~~~~~~~alale 144 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICC-----S----------RPDHGVDLLPLLSGCLN---QSCDEVAQALALE 144 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHH-----h----------ChhhHHHHHHHHHHHHh---ccccHHHHHHHHH
Confidence 1 11 0122233344444455544333 2 23388888888888886 7788889999998
Q ss_pred HHhHHh
Q 026179 165 FLETHV 170 (242)
Q Consensus 165 F~e~vI 170 (242)
++..+-
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 887665
No 95
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.40 E-value=3.2e+02 Score=25.90 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHH--HHHHHHHHHhhc-hhh----hHHHHHHHHHHHhcCCChHH
Q 026179 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRK--SLIETIEDIGLK-AME----HSSILMPVLLAFLRDGDSGV 99 (242)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk--~~~~fiee~~~~-~~e----~~~~~v~~L~~LL~d~~~~V 99 (242)
.+|...-....++||++...++.+++-. .|-..-.| ...+.+++++.. .++ ....+...+...+..+...|
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~--WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKH--WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHH--S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6777777888889999999999999764 44333334 344666666543 222 23333444444456777888
Q ss_pred HHHHHHhhh
Q 026179 100 AGKSIVCGT 108 (242)
Q Consensus 100 ~K~aI~~~~ 108 (242)
+.+|+....
T Consensus 314 AErAl~~w~ 322 (409)
T PF01603_consen 314 AERALYFWN 322 (409)
T ss_dssp HHHHHGGGG
T ss_pred HHHHHHHHC
Confidence 887776543
No 96
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.12 E-value=56 Score=35.05 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHhcCCCchHHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhh
Q 026179 33 RGILSSADPSLAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (242)
Q Consensus 33 relll~~~p~ll~~~l~~vl-~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY 111 (242)
-++.+ .+-.|+..++|.++ +++......+|.-++=-+.++|..++-+.-+-+|.+.+-|.|.++.|-|++|--.+.+.
T Consensus 956 akmcL-ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 956 AKMCL-AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34444 34456666777665 66777788899999888999999999888888999999999999999999887777765
Q ss_pred HH
Q 026179 112 CR 113 (242)
Q Consensus 112 ~~ 113 (242)
..
T Consensus 1035 q~ 1036 (1529)
T KOG0413|consen 1035 QF 1036 (1529)
T ss_pred hh
Confidence 43
No 97
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.11 E-value=6.3e+02 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.4
Q ss_pred cCCCCchHHHHHHHHhHHhhhcc
Q 026179 152 EPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 152 d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
|++.. ||+.|++-+-.++....
T Consensus 170 d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 170 DPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred CCcch-HHHHHHHHHHHHHHHhc
Confidence 44444 99999999888777664
No 98
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=34.96 E-value=2.4e+02 Score=29.39 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=43.4
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHHH-HHHHHhcCCChHHHHHHHHhh
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILMP-VLLAFLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~~~~v~-~L~~LL~d~~~~V~K~aI~~~ 107 (242)
.+.+..+|.+.+++.|..-.+|.-+.+++...+.+ ..++...-.. .+..-+.|....+.++|..++
T Consensus 475 ~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 475 TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 35588899999999999889999999999887654 2344332222 333335565555655555444
No 99
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=34.60 E-value=1.9e+02 Score=30.21 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHh-cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHhcCCChHHH
Q 026179 24 VKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--AMEHSSILMPVLLAFLRDGDSGVA 100 (242)
Q Consensus 24 ~kl~~L~q~relll-~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~--~~e~~~~~v~~L~~LL~d~~~~V~ 100 (242)
.+...|..+.+++- ...+..-..|+|-+..+..|+.++||-=++.++..+.+. .+..=..+.+.+..|..|++..|-
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 35555555555543 245666688999999999999999999999999987653 122223333455555679988887
Q ss_pred HHHHHhhhhh
Q 026179 101 GKSIVCGTNF 110 (242)
Q Consensus 101 K~aI~~~~~l 110 (242)
=+|+++.+.+
T Consensus 653 ~~a~~a~~~i 662 (759)
T KOG0211|consen 653 YRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHH
Confidence 7888877654
No 100
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=34.18 E-value=1.3e+02 Score=30.25 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=37.9
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 026179 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (242)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~-~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~ 109 (242)
+++..++.+.+- ..++...--++++-+++... +....++.+++.+..-|.|..|.|.|.++.|+..
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 334444433332 33444444455555544332 3344577777777777778888888888877754
No 101
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=33.63 E-value=1.5e+02 Score=29.69 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc------------------hh---
Q 026179 24 VKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------------------AM--- 78 (242)
Q Consensus 24 ~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~------------------~~--- 78 (242)
+|...+.-+.-+. .-.|. .+++++|.+.+.-.|..++||+...+-+-..|.. +|
T Consensus 270 tK~aslellg~m~-~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 270 TKMASLELLGAMA-DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred hHHHHHHHHHHHH-HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence 4555555555333 23443 4478888877888899999999999877776531 11
Q ss_pred -------------------hhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHH
Q 026179 79 -------------------EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (242)
Q Consensus 79 -------------------e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~ 114 (242)
.=+..+++.|+.=+++.+...-|.+++...++|.++
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 123344555555556666666777777777777776
No 102
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=4e+02 Score=25.06 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH-----HHHHHHHH
Q 026179 19 HGDLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS-----ILMPVLLA 90 (242)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~--ll-~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~-----~~v~~L~~ 90 (242)
+.|..+|...|-..++++.+=|-+ |. -+.++.++.+-.+.+.+||..-+..|..+....|---. ..+..|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 478889999999999999653321 22 24455566665678889999999999887654331111 13334555
Q ss_pred HhcCCChH-HHHHHHHhhhhhhHH
Q 026179 91 FLRDGDSG-VAGKSIVCGTNFFCR 113 (242)
Q Consensus 91 LL~d~~~~-V~K~aI~~~~~lY~~ 113 (242)
.|..+++. |-++|.-+.+++.|.
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhc
Confidence 55544444 445555566666653
No 103
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=6.6e+02 Score=28.33 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=75.3
Q ss_pred hhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHHhc-------CC---------ChHHHHHHHHhhhhh
Q 026179 53 ELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLR-------DG---------DSGVAGKSIVCGTNF 110 (242)
Q Consensus 53 ~~~~d~~~~vrk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~-------d~---------~~~V~K~aI~~~~~l 110 (242)
+...|...+||+-.++-+-.+.-.| ..+-.-++..+.-||. ++ -....=..|++.+-+
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 5567888999999988776665332 2345555656666665 11 122233468888999
Q ss_pred hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026179 111 FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 111 Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
|+.-| +-.-+. +.--+.|+.+-++-.+-. -+++.-+++++||-+|+++.-..
T Consensus 1084 f~e~f-----k~llnl---n~f~~vwe~ll~flkrl~----s~~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1084 FSENF-----KLLLNL---NGFLDVWEELLQFLKRLH----SDISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred HHHHH-----HHHHhc---ccHHHHHHHHHHHHHHHH----hcCChHhHHHHHHHHHHHHHHHh
Confidence 99988 433333 456788888877655543 35888999999999999987655
No 104
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.15 E-value=1.3e+02 Score=26.85 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=48.1
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 42 ~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
.+|+-|++++-+.-++-.---|.=+.++|.--+.+-.-.+++++..|..-|...|-.|.+++.+....+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQL 182 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 377889998888765555444555567775445444556888888888888888888888777655444
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=31.94 E-value=3.9e+02 Score=31.29 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCC--chH---HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026179 4 VSRDQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADP--SLA---AELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (242)
Q Consensus 4 ~~~~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p--~ll---~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (242)
.+...|..|+.+-... ....+|-..+++.|++.-+++- .++ ++++|.++.+-...+..+|...+..+...+..
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~- 88 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE- 88 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 5677888888887754 3445788889999999965522 344 45888888876566788999888777766543
Q ss_pred hhh-----HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHH
Q 026179 78 MEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 78 ~e~-----~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l 115 (242)
.++ ...+++.|..+|+..++...+.|. +.||-+..
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA---~AL~sLS~ 128 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAA---EAIYAVSS 128 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH---HHHHHHHc
Confidence 222 356777888888888776655543 33444443
No 106
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=31.91 E-value=1.3e+02 Score=30.14 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhc------hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 40 DPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLK------AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 40 ~p~ll~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~~------~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
+|+.+.+.+-.+-.+ ...+..-+|=-+++|+.-.++. ....++.+..-...||+|++..|.-.|+.+|+..
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 455555555444433 3455555898999999877642 2346777777777789999999999999998753
No 107
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.78 E-value=3e+02 Score=28.21 Aligned_cols=85 Identities=22% Similarity=0.138 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCc---hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCCh
Q 026179 25 KLSSLKQVRGILSSADPS---LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDS 97 (242)
Q Consensus 25 kl~~L~q~relll~~~p~---ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~~~ 97 (242)
=+.-|+.--+..+.++|. +.+.++-.++-....+...||+-+.++|.-+. -.+..+...++..|..-+-|..+
T Consensus 67 il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~ 146 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK 146 (885)
T ss_pred HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH
Confidence 356667777777778885 77888888887777788899999988887653 23455666666666666667777
Q ss_pred HHHHHHHHhhhh
Q 026179 98 GVAGKSIVCGTN 109 (242)
Q Consensus 98 ~V~K~aI~~~~~ 109 (242)
+|-..|+.|.+-
T Consensus 147 ~VR~eAv~~L~~ 158 (885)
T COG5218 147 AVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=31.46 E-value=3.8e+02 Score=29.64 Aligned_cols=128 Identities=19% Similarity=0.330 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC---CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh--chh
Q 026179 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA---DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAM 78 (242)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~---~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~--~~~ 78 (242)
+..+-++=||.+|..-+.-..=+..|..+.-|+... -|.+. +++..++.|--.|+.=+|+++.+||.++.. .+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 456778999999998766556667777777766433 34444 778888888778999999999999998743 344
Q ss_pred hhHHHHHHHHHHHhcCCChHHHHH--HHHhh-hhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026179 79 EHSSILMPVLLAFLRDGDSGVAGK--SIVCG-TNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (242)
Q Consensus 79 e~~~~~v~~L~~LL~d~~~~V~K~--aI~~~-~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (242)
+--.+++|.++-+++-.-..+-|. -++|. --+=|.+|.+++ +|- .++..-|...
T Consensus 731 dvyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~-r~~------~ens~f~k~l 787 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLL-RWS------DENSSFWKKL 787 (1431)
T ss_pred hheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHH-HHh------hcchHHHHHH
Confidence 544555666776666332333333 23443 334455555554 332 2345556544
No 109
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=31.44 E-value=1.3e+02 Score=25.05 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=26.8
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHH
Q 026179 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (242)
Q Consensus 46 ~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI 104 (242)
.+.+.+.+...+.+.-+||+..-.+-....+ +....+++.+..++.|++.-|.|-+-
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~ 176 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIG 176 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3444444444455666666665443222222 44445555555555555555544433
No 110
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=1e+02 Score=32.54 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=72.3
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhh--ch--hhhHHHHHHHHHHHhcCCChHHHHHHHH---hhhhhhHH-HHHH
Q 026179 46 ELFPYLVELQSSPESLVRKSLIETIEDIGL--KA--MEHSSILMPVLLAFLRDGDSGVAGKSIV---CGTNFFCR-VLEE 117 (242)
Q Consensus 46 ~~l~~vl~~~~d~~~~vrk~~~~fiee~~~--~~--~e~~~~~v~~L~~LL~d~~~~V~K~aI~---~~~~lY~~-~l~~ 117 (242)
+-+.+.++..+|+.+.+|-.+...+..... ++ -..-.+++.....+|+|+|+.|+=.||+ |..-.||. +|+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 446666666678877777776666655544 22 2346677888889999999999999999 55666765 4444
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcc
Q 026179 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181 (242)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~ 181 (242)
+.-.+.-..+-.+ =+.....=+.|++.+..-|. .+.||.+.+|-++=.|..+|+
T Consensus 807 L~e~Y~s~k~k~~-----~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQ-----TDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCCC-----ccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCCch
Confidence 4443332221110 11111222444443322222 345566666666666655553
No 111
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=2e+02 Score=29.73 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=57.5
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhh---hhhhHHHHHHHhhhhhccCC
Q 026179 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG---TNFFCRVLEEITMQFRWHGK 127 (242)
Q Consensus 51 vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~---~~lY~~~l~~~~~~~~~~~~ 127 (242)
++.+.+|.+..||+..++=+-...- --++-..+......++.|++..|-|.|||.. ++.||.=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~------------- 268 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP------------- 268 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc-------------
Confidence 3334455666666666554322211 1122233344455667888888888887754 4444411
Q ss_pred ccchHHHHHHHHHHHHHHHHHH---hccCCCCchHHHHHHHH------hHHhhhcc
Q 026179 128 VERWLEELWTWMVRFKDAVFAI---ALEPGLVGTKLLALKFL------ETHVLLFT 174 (242)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~~---~~d~~n~Gvr~~aiKF~------e~vIl~qT 174 (242)
.+++.++ .+++++.++. +....+.|||+.|.|.+ .+=+|-||
T Consensus 269 ~e~e~~e-----~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QT 319 (823)
T KOG2259|consen 269 LERESEE-----EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQT 319 (823)
T ss_pred ccchhhh-----hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHH
Confidence 1111111 2344444432 44678899999999975 44577787
No 112
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.99 E-value=4.4e+02 Score=26.24 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCc----hHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhchhhh---
Q 026179 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPS----LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEH--- 80 (242)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~----ll~~~l~~vl~~~-~d~~~~vrk~~~~fiee~~~~~~e~--- 80 (242)
.+.+-++..+.|...++....+.|.++... +|- .-.+.+|.++++- .+.++.++-..|--+.-++....+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344445555677778999999999999642 342 2257788888774 4666778777777777777644332
Q ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 81 --SSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 81 --~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
-..+++.+..|+...+..|..+|+.+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 234566788889999999999999988876
No 113
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=30.87 E-value=5.3e+02 Score=25.87 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=90.9
Q ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHhhchhhhHHHHH-----HHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026179 49 PYLVELQS-SPESLVRKSLIETIEDIGLKAMEHSSILM-----PVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (242)
Q Consensus 49 ~~vl~~~~-d~~~~vrk~~~~fiee~~~~~~e~~~~~v-----~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~ 122 (242)
-.|+.++. ...+++.|.++++||-.++--.+-+..++ +.+.+-.+-.||.+++.+.++.+++-=..=..+-++
T Consensus 224 ~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrr- 302 (832)
T KOG3678|consen 224 GVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRR- 302 (832)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHH-
Confidence 33444443 34579999999999888765555444333 334444556789999999999887643222111111
Q ss_pred hccCCccchHHHHHHHHHHH-HHHHHHH-----------hccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCc
Q 026179 123 RWHGKVERWLEELWTWMVRF-KDAVFAI-----------ALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQ 190 (242)
Q Consensus 123 ~~~~~~~~~~~~~W~~m~~~-K~~Il~~-----------~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~ 190 (242)
++.. --.-|=...++ |+.+++. --+-+++=-|--++|.+|-+|.+.-|+.=.-+..+...
T Consensus 303 mveK-----r~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQ--- 374 (832)
T KOG3678|consen 303 MVEK-----RAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQ--- 374 (832)
T ss_pred HHHh-----hhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhc---
Confidence 1111 12233333222 3444432 00122333344567788887777665531100111110
Q ss_pred cccccccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 026179 191 TFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQ 225 (242)
Q Consensus 191 d~sl~~vP~~Hp~l~~~~Le~Ea~~lL~~LL~~l~ 225 (242)
.-.-+|+-+--|+|+-..+|+.+-+.|-..++...
T Consensus 375 G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI 409 (832)
T KOG3678|consen 375 GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI 409 (832)
T ss_pred cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence 11224556667899999999999888876665544
No 114
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.24 E-value=1.8e+02 Score=23.78 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 49 PYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 49 ~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
+.+.+...+.+.-+||++..++.....+ ......+++.+..++.|++.-|.|-+--+...++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444556677777888887777554443 344566666666666777666666655555555443
No 115
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=30.23 E-value=4.4e+02 Score=24.32 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=63.8
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHHhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026179 56 SSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (242)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d-~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~ 132 (242)
..++.++-.-+..++..+|.-.-|- ..+++ ... .+..+.|-+.+ .+.+|..++..+- ...+....
T Consensus 171 ~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai------~~~~k~~liAKLa~q-v~~~Y~~a~~~l~-----~~~~~~~~ 238 (346)
T cd09240 171 QEPTPDLSPDTLSALSALMLAQAQEVFYLKAT------RDKMKDAIIAKLAAQ-AADYYGDAFKQCQ-----REDVRSLL 238 (346)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------hccCchhHHHHHHHH-HHHHHHHHHHHHh-----cchhcccc
Confidence 3456677777888888887654442 22222 122 23445555544 4678999985442 22222345
Q ss_pred HHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhH
Q 026179 133 EELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLET 168 (242)
Q Consensus 133 ~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~ 168 (242)
...|..+..+|...+.- ..+.+..|..++..|..+.
T Consensus 239 ~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 239 PKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 78899999999887642 2246789999999988866
No 116
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=1.1e+02 Score=31.57 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=39.5
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCC
Q 026179 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (242)
Q Consensus 40 ~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~ 95 (242)
+++-++++++++.+.+.+-+.+.-|-.+.-|..+..+..+- ..|++.|..+++-.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK 398 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc
Confidence 34455677777777777777766666666666666666666 88999999999844
No 117
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.00 E-value=2.4e+02 Score=21.05 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (242)
+.++-.++.++-.++|..+=.+.+.. + +-|.+.++++-.++....+....-|+.++.++...|...
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~~---L---~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLLE---L---KLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH---h---CCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45677888999988886555555543 3 224566788888887777776778999999999888643
No 118
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=29.59 E-value=2e+02 Score=20.03 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHH
Q 026179 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (242)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~ 113 (242)
.||..+.|+...+.|++-+-.+.+-+..++. ..|.-.++..=+-.+.+++.+.-.
T Consensus 2 ~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~---cYL~LN~~~~H~~Iv~aF~dv~~~ 56 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENGIRDWDDLEELLA---CYLSLNSPEHHKFIVEAFVDVWVE 56 (59)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHHhCChhhhhHHHHHHHHHHHH
Confidence 4777899999999999877766666665542 333333444445556666655443
No 119
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=29.43 E-value=5.8e+02 Score=27.68 Aligned_cols=111 Identities=18% Similarity=0.127 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC----CchhhHHHHHHHHHHHHhhc-
Q 026179 4 VSRDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS----SPESLVRKSLIETIEDIGLK- 76 (242)
Q Consensus 4 ~~~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~----d~~~~vrk~~~~fiee~~~~- 76 (242)
+.-.++..-+.+|... .+.+.|++.|.-.-+++. +..+++++|=+.++.+.. .+...|||--+..|......
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 3445666677777754 566689999999998885 888888898888886542 34557888777666654433
Q ss_pred hhhhHHHHHHHHHHHhc-CCChHHHHHHHHhhhhhhHHHH
Q 026179 77 AMEHSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 77 ~~e~~~~~v~~L~~LL~-d~~~~V~K~aI~~~~~lY~~~l 115 (242)
..+....+++.|..=|. -..+..++.-|||.+.+-|.+=
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 22344444444444343 3457888999999998877643
No 120
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.66 E-value=3.1e+02 Score=30.34 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh---c----hhh-hHHHHHHHHHHHhc
Q 026179 23 AVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---K----AME-HSSILMPVLLAFLR 93 (242)
Q Consensus 23 ~~kl~~L~q~relll~~-~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~---~----~~e-~~~~~v~~L~~LL~ 93 (242)
..|++.|.=++++-..- +-..+|-++|+++-+-.|+...||-....-+.++.. . +.- +...+.|.|..|+.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 36888888888888654 446889999999999999999999888777766542 1 111 34456678999999
Q ss_pred CCChHHHHHHHH
Q 026179 94 DGDSGVAGKSIV 105 (242)
Q Consensus 94 d~~~~V~K~aI~ 105 (242)
|.++..++-+..
T Consensus 518 d~~~~~vRiayA 529 (1431)
T KOG1240|consen 518 DSSAQIVRIAYA 529 (1431)
T ss_pred cCccceehhhHH
Confidence 977766665543
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.59 E-value=4.1e+02 Score=29.22 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH
Q 026179 6 RDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI 83 (242)
Q Consensus 6 ~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~ 83 (242)
|+-+++.+-.+... .|. +.-.+.+++|. +|++-+.+=-.|-++-||--+.+.++.+|..+......
T Consensus 329 Rnavlei~~n~V~~~l~d~-e~~~~sk~~r~-----------~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~ 396 (1251)
T KOG0414|consen 329 RNAVLEICANLVASELRDE-ELEEMSKSLRD-----------ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGS 396 (1251)
T ss_pred HHHHHHHHHHHHHHHhcch-hhhHHHHHHHH-----------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccH
Q ss_pred HHHHHHHH---hcCCChHHHHHHHHhhhhh
Q 026179 84 LMPVLLAF---LRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 84 ~v~~L~~L---L~d~~~~V~K~aI~~~~~l 110 (242)
--+.+... |.|.+..|-|.||+-+..+
T Consensus 397 ~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 397 RTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHH
No 122
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=28.52 E-value=1.1e+02 Score=26.26 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026179 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (242)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~ 80 (242)
++++.+.|+++++.+... ..+.+++.|...++..=|+=+++.|--.|+-...|
T Consensus 85 lS~~~~gR~~~l~~~~~~--~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYD--GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred hcCCHHHHHHHhCchhhh--hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 567788899998655533 25666666765666666666778998888866554
No 123
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=28.32 E-value=6e+02 Score=25.22 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhhchhhh
Q 026179 5 SRDQALSLLAAANNHGD---LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEH 80 (242)
Q Consensus 5 ~~~~v~~lln~A~~~~d---~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~-d~~~~vrk~~~~fiee~~~~~~e~ 80 (242)
..+++++.++......| ..+-...|+++..-+-.-+.. -..++..|+.+-= ..+..+++-..+|+...+..++.+
T Consensus 30 ~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~y 108 (563)
T PF05327_consen 30 QYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKY 108 (563)
T ss_dssp HHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGG
T ss_pred HHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 34566666643322233 235556666666666433444 4677888877732 467788999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 026179 81 SSILMPVLLAFLRD 94 (242)
Q Consensus 81 ~~~~v~~L~~LL~d 94 (242)
+..|+..|...+..
T Consensus 109 l~~vl~~LV~~f~p 122 (563)
T PF05327_consen 109 LSPVLSMLVKNFIP 122 (563)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhccC
Confidence 99999888877653
No 124
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=28.03 E-value=5.1e+02 Score=24.28 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHHHHhhc-hhhh-HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026179 58 PESLVRKSLIETIEDIGLK-AMEH-SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (242)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~-~~e~-~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (242)
++.++..-+.+++...|.- ..|. +.+++. ....++++-+.-.-.+.+|..+.+.+. +. ++.....
T Consensus 168 p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~------~k~k~sliaKLA~q~a~~Y~~A~~~l~-----~~--~~~i~~~ 234 (353)
T cd09243 168 KGSDLDPRVLEAYINQCTAEAQEVTVARAIE------LKHNAGLISALAYETAKLFQKADDSLS-----SL--DPEYSGK 234 (353)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHHHHHHH-----cC--CccccHH
Confidence 5567777788888777653 3332 333332 123455554444555668999985442 11 1335667
Q ss_pred HHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026179 136 WTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (242)
Q Consensus 136 W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (242)
|..+..+|...+.- ..+.+..|.-+++.|-.+..
T Consensus 235 W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 235 WRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHH
Confidence 99999999887642 22466779999999877763
No 125
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.52 E-value=6.3e+02 Score=27.73 Aligned_cols=95 Identities=25% Similarity=0.254 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCCChHHHHHH-HHHHHHHHhcCC----CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---
Q 026179 8 QALSLLAAANNHGDLAVKLSS-LKQVRGILSSAD----PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME--- 79 (242)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~-L~q~relll~~~----p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e--- 79 (242)
..+..|.+. ..+|..-.... |-++..++.+-. -..+..++..|-.+-...+.++++-.++||--.+.+.|+
T Consensus 785 efl~~Isag-l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 785 EFLSIISAG-LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345555544 44554333333 666666665432 234444444444445678899999999999877776654
Q ss_pred --hHHHHHHHHHHHhcCCChHHHHHH
Q 026179 80 --HSSILMPVLLAFLRDGDSGVAGKS 103 (242)
Q Consensus 80 --~~~~~v~~L~~LL~d~~~~V~K~a 103 (242)
|.+.+++.+..++.|....+.+.+
T Consensus 864 ~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677788888888888776665554
No 126
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=27.09 E-value=3.2e+02 Score=29.22 Aligned_cols=100 Identities=21% Similarity=0.364 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC---chHHhhhHHHHhhcCCch---hhHHHHHHHHHHHHhhchh---
Q 026179 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP---SLAAELFPYLVELQSSPE---SLVRKSLIETIEDIGLKAM--- 78 (242)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p---~ll~~~l~~vl~~~~d~~---~~vrk~~~~fiee~~~~~~--- 78 (242)
.+.-||=||..-+|...|++.|+-...++....+ .-++.++|..+.+..|.+ ..||--..+-++-.-..-|
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4567888999889999999999999999864332 345778888888766654 5677666666654433221
Q ss_pred --hhHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 026179 79 --EHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (242)
Q Consensus 79 --e~~~~~v~~L~~LL~d~~~~V~K~aI~~~ 107 (242)
-+-+.++..|..-|.|.--.|-|.|+.|=
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 24667777777777777556666665543
No 127
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=26.38 E-value=5.4e+02 Score=24.03 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC--CchhhHHHHHHHHHHH
Q 026179 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS--SPESLVRKSLIETIED 72 (242)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~--d~~~~vrk~~~~fiee 72 (242)
++++-|......+.. -.+.++++-+.+++-+- +.++.+++.+. ..++++...+.+|++.
T Consensus 14 ~~i~sl~~~~~~~s~--s~~s~~~~t~~Lle~~Q----evv~~ile~~~di~~~~~L~~Lv~~YFd~ 74 (336)
T PF05055_consen 14 RVISSLATGVETRSL--SFDSLKEVTECLLEMNQ----EVVKVILECKKDIWKNPELFRLVSDYFDS 74 (336)
T ss_pred HHHHHhhhccccCCC--ChHHHHHHHHHHhCCCh----HHHHHHHHHHHHhhcChhHHHHHHHHHHh
Confidence 444444444433332 28899999999986665 56666666653 3678999999999964
No 128
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.85 E-value=2.8e+02 Score=20.55 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc
Q 026179 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK 76 (242)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~ 76 (242)
+.++-.+|.++-..+|..+=... ++|+ +-|.+.++++-.++....+.+..-|+.++.++...+..
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~~---l~el---~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~ 66 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVEC---LKEL---KLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHH---HHHT---T-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCHHHHHHH---HHHh---CCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 45677788888887885444444 4554 23367788888888777777888999999999888754
No 129
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=25.31 E-value=1.2e+02 Score=27.26 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHH
Q 026179 23 AVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGK 102 (242)
Q Consensus 23 ~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~ 102 (242)
..++....+.|.+++ .||.|.++++|. ..+...-|..+.++..........++..+..+....|...++...+|
T Consensus 204 ~~r~lLvh~~Rr~l~-~DP~LP~elLP~-----dW~G~~Ar~lf~~l~~~L~~~a~~~~~~~~~~~~g~lp~~~~~~~~r 277 (280)
T TIGR02277 204 VARLLLVHEYRRVVL-RDPLLPEELLPA-----DWPGDAARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLR 277 (280)
T ss_pred HHHHHHHHHHHHHhh-cCCCCChhhCCC-----CCCcHHHHHHHHHHHHHHhHHHHHHHHHHccccCCCCCCCchhHHhh
Confidence 456777788888886 999999999984 45778889999888887777777777766655444444455555443
No 130
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=25.21 E-value=7e+02 Score=29.35 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----HHHHHHHHHHHhcCCChHHHHHHHHhhhhhhH
Q 026179 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (242)
Q Consensus 46 ~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~-----~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~ 112 (242)
+-+|.+.++....+..+++..+..|+.+|..+.+. ....++.|..+|...+..+.|.+..+.+++++
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 46677777777778889999999998888755443 23456677888888888899999999888884
No 131
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=24.32 E-value=2.7e+02 Score=25.50 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhcC---CCh------HHHHHHHHHHHHHHh-cC--CCchHHhhhHHHH----hhcCCchhhHHHHHHH
Q 026179 5 SRDQALSLLAAANNH---GDL------AVKLSSLKQVRGILS-SA--DPSLAAELFPYLV----ELQSSPESLVRKSLIE 68 (242)
Q Consensus 5 ~~~~v~~lln~A~~~---~d~------~~kl~~L~q~relll-~~--~p~ll~~~l~~vl----~~~~d~~~~vrk~~~~ 68 (242)
.-++|+..++..... ++. .+|..-|-++-..+. |+ +|..+|.+...++ .+..-...+.++++-+
T Consensus 5 d~~~vv~el~~i~~~~~~~~~~~p~~~leR~~fL~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~ 84 (284)
T PF04793_consen 5 DIGQVVHELNTISVSTRVPRSSHPLLALERGLFLLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKE 84 (284)
T ss_pred CHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 346888888888752 221 245555555444444 33 6767776666554 1222334567888888
Q ss_pred HHHHH-hhchhhhHHHHHHHHHHHhcCCChHHH
Q 026179 69 TIEDI-GLKAMEHSSILMPVLLAFLRDGDSGVA 100 (242)
Q Consensus 69 fiee~-~~~~~e~~~~~v~~L~~LL~d~~~~V~ 100 (242)
.+.++ -..+..+...+...+..++..+.|...
T Consensus 85 ~L~~l~~~~d~~L~~~L~~~l~~ll~~~yP~~~ 117 (284)
T PF04793_consen 85 ILDHLEEAGDSNLERELAKGLPKLLGCKYPHIL 117 (284)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHhhhCCCcC
Confidence 88875 455666666666666666665554433
No 132
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.95 E-value=6.4e+02 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
.+.++.||+-+++.+.. +..+ ..+.+..+|+|+|+.|...++.+.+.+
T Consensus 127 ~~~~p~vR~aal~al~~---r~~~----~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 127 AASEPPGRAIGLAALGA---HRHD----PGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred cCCChHHHHHHHHHHHh---hccC----hHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 35555666655544432 1111 233455666677777777777766554
No 133
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=23.48 E-value=7.7e+02 Score=26.02 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHHhcCCChHH
Q 026179 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLRDGDSGV 99 (242)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~d~~~~V 99 (242)
++.|..+-+-+.+ ..-+..+.+.|+++..+.++.+|-++..|+..-..+. .+-+..+++.+....+|.+..|
T Consensus 353 ~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~V 430 (815)
T KOG1820|consen 353 RDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDV 430 (815)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHH
Confidence 3455555555544 3335677788888877888877777777775433321 1346777778888888999999
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhh
Q 026179 100 AGKSIVCGTNFFCRVLEEITMQFR 123 (242)
Q Consensus 100 ~K~aI~~~~~lY~~~l~~~~~~~~ 123 (242)
-+-+--+++.+|+..=+.+..+.+
T Consensus 431 R~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988877776654
No 134
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=23.40 E-value=9.2e+02 Score=25.70 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=51.0
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHH
Q 026179 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (242)
Q Consensus 43 ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~-----~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~ 114 (242)
+++.+.-++|-.-.++++.||.+.++.|..+... ..++...+=-.|...|..++|.|+-.++-+..+||-..
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 5566777776666788999999999999886532 22344444445666678889999888777777777654
No 135
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.29 E-value=1.1e+03 Score=26.47 Aligned_cols=95 Identities=17% Similarity=-0.015 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhc--CCChHHHHHHHHhhhhhhHHHHHHHhhhhh--cc--CC---ccchHHHHHHHHHHHHHHHHHHh
Q 026179 80 HSSILMPVLLAFLR--DGDSGVAGKSIVCGTNFFCRVLEEITMQFR--WH--GK---VERWLEELWTWMVRFKDAVFAIA 150 (242)
Q Consensus 80 ~~~~~v~~L~~LL~--d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~--~~--~~---~~~~~~~~W~~m~~~K~~Il~~~ 150 (242)
.+....+.+..-|+ |.....++.||+-+-.-.+.+=+.+.+--. .. .+ -+....++|..|.++|..+.++-
T Consensus 1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444 445567788888776666665544432100 00 00 12467899999999999998853
Q ss_pred ccC-----CCCchHHHHHHHHhHHhhhcc
Q 026179 151 LEP-----GLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 151 ~d~-----~n~Gvr~~aiKF~e~vIl~qT 174 (242)
.+. .-.+++..|..-=+..=.+|+
T Consensus 1640 ~~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1640 AEAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 224455555443333334443
No 136
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=23.27 E-value=2.5e+02 Score=28.34 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=19.8
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHh
Q 026179 47 LFPYLVELQSSPESLVRKSLIETIEDIG 74 (242)
Q Consensus 47 ~l~~vl~~~~d~~~~vrk~~~~fiee~~ 74 (242)
=+.+.++++..=..|-|.|+.+|+|++.
T Consensus 483 gl~et~eLA~~L~~Esr~WFL~FVE~aL 510 (579)
T PF06075_consen 483 GLKETAELAKQLQEESRSWFLKFVEKAL 510 (579)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554445689999999999974
No 137
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.24 E-value=1.8e+02 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred hHHHHHH----HHHHHHhh------------chhhhHHHHHHHHHHHhcCCChHHHHHHH
Q 026179 61 LVRKSLI----ETIEDIGL------------KAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (242)
Q Consensus 61 ~vrk~~~----~fiee~~~------------~~~e~~~~~v~~L~~LL~d~~~~V~K~aI 104 (242)
++|.+++ ++|||=|- +..+.+..+|++.+.=|.|.|..|.|.-|
T Consensus 93 eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 93 ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 6677766 68888772 23456999999999999999999998744
No 138
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.08 E-value=6.2e+02 Score=26.57 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCC--chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHHhcCCChHHH
Q 026179 27 SSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVA 100 (242)
Q Consensus 27 ~~L~q~relll~~~p--~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~~~~V~ 100 (242)
+-|..--+-+.+.++ .+++.++-.+|-+.-.++-.||.-+..+|.-+. -.+......+...+..-+.|.-|.|-
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 444444444444444 478888888887776778889999988887653 34566777777777777788888888
Q ss_pred HHHHHhhhhhh
Q 026179 101 GKSIVCGTNFF 111 (242)
Q Consensus 101 K~aI~~~~~lY 111 (242)
.+|+.|.+-+-
T Consensus 144 iqAv~aLsrlQ 154 (892)
T KOG2025|consen 144 IQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 139
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=1e+03 Score=25.94 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----chhh
Q 026179 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-----KAME 79 (242)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~-----~~~e 79 (242)
+.+++-+...+++-.++-..|-..--+. ++.+. .+|+++|-|+.+-.|+++.||--...-|..... ....
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 4566677777788777766666555444 34432 557888888888789999999877776666432 1122
Q ss_pred hHHHHHHHHHHHhcC-CChHHHHHHHHhhhhhhHHHH
Q 026179 80 HSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVL 115 (242)
Q Consensus 80 ~~~~~v~~L~~LL~d-~~~~V~K~aI~~~~~lY~~~l 115 (242)
+-.++.+.|...+.+ +++.|...|..|.-+..-.+-
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 333444456666665 467888888777766554443
No 140
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=22.31 E-value=1.6e+02 Score=24.02 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026179 80 HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (242)
Q Consensus 80 ~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~ 120 (242)
+-..+-+.+..++.+.+..-..+++.+.+.+||...+..+.
T Consensus 40 ~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 40 FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 33444445556666655557789999999999999977754
No 141
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.14 E-value=5.8e+02 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhh
Q 026179 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (242)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~l 110 (242)
+++...++++.|..-++|.++.+.-.+++..++.
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 4567888999888889999988887777654443
No 142
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=21.96 E-value=5.9e+02 Score=22.96 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHhhchhh--hHHHHHHHHHHHhcCCChHHHHHHHHhh--hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHH
Q 026179 68 ETIEDIGLKAME--HSSILMPVLLAFLRDGDSGVAGKSIVCG--TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFK 143 (242)
Q Consensus 68 ~fiee~~~~~~e--~~~~~v~~L~~LL~d~~~~V~K~aI~~~--~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K 143 (242)
++++.++.-.|. .+..++.-+.+|-+-+||..+=..|..+ |++|=..+-.+---.+.+ |+....++-=..+.-++
T Consensus 149 ~v~~~~g~~APafGmiGTviGLI~mL~~L~dp~~IG~~mAvAlvtTlYGv~~Anlif~PiA~-kL~~~~~~e~~~~~~i~ 227 (271)
T PRK06926 149 RIFEKAGEYAPAWGMIGTLVGLVLMLKNLNDPSTLGPNMAIALLTTLYGTLLANLVFLPIAA-KLEEKTEEEVFVKQVII 227 (271)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333333333443 5788888777775555687776666655 999999986654433321 22233344444455566
Q ss_pred HHHHHHhccCCC
Q 026179 144 DAVFAIALEPGL 155 (242)
Q Consensus 144 ~~Il~~~~d~~n 155 (242)
+-|+. .....|
T Consensus 228 eGila-i~~G~n 238 (271)
T PRK06926 228 EGVIG-VQSGQN 238 (271)
T ss_pred HHHHH-HhCCCC
Confidence 66666 334444
No 143
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.73 E-value=8.7e+02 Score=24.80 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCchH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026179 29 LKQVRGILSSADPSLA-AELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (242)
Q Consensus 29 L~q~relll~~~p~ll-~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~ 75 (242)
...+-+.+..+.+-.+ ++++|+++-|-.++++++|+|....+.....
T Consensus 102 F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~ 149 (727)
T PF12726_consen 102 FDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKR 149 (727)
T ss_pred HHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 3445555555555444 8999999988889999999999999988643
No 144
>PRK05685 fliS flagellar protein FliS; Validated
Probab=21.46 E-value=4.1e+02 Score=20.97 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=36.0
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh--------hchhhhHHHHHHHHH
Q 026179 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG--------LKAMEHSSILMPVLL 89 (242)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~--------~~~~e~~~~~v~~L~ 89 (242)
..+|.+++-..|.++++++. ++... +-.+...++-+.+.++...+. .++++.+..+++.|.
T Consensus 47 ~~~~~~~~~~~l~ka~~Ii~--------eL~~s---Ld~e~ggeiA~~L~~LY~y~~~~L~~A~~~~d~~~l~ev~~il~ 115 (132)
T PRK05685 47 EQGDIEAKGEYLSKAINIIN--------GLRNS---LDMEKGGEVAKNLSALYDYMIRRLLEANLRNDVQAIDEVEGLLR 115 (132)
T ss_pred HcCCHHHHHHHHHHHHHHHH--------HHHhh---cCCccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34888888888888888873 44332 223444577777776665432 234455555544444
Q ss_pred H
Q 026179 90 A 90 (242)
Q Consensus 90 ~ 90 (242)
.
T Consensus 116 ~ 116 (132)
T PRK05685 116 E 116 (132)
T ss_pred H
Confidence 3
No 145
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=21.43 E-value=6.1e+02 Score=24.86 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHH-HHHHHHHhcCCC-chHHhhhHHHHhhcC-CchhhHHHHHHHHHHHH------h
Q 026179 6 RDQALSLLAAANNH--GDLAVKLSSL-KQVRGILSSADP-SLAAELFPYLVELQS-SPESLVRKSLIETIEDI------G 74 (242)
Q Consensus 6 ~~~v~~lln~A~~~--~d~~~kl~~L-~q~relll~~~p-~ll~~~l~~vl~~~~-d~~~~vrk~~~~fiee~------~ 74 (242)
.+-++++.+.+.++ ++..++++.+ -..||+++...| +-+..+++.++.... ..+.+++|-+++-+-+. |
T Consensus 104 F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p~s~~~~~f~~~l~~~~~~~~~~~~~E~~~~li~CLt~d~~c 183 (469)
T PF10151_consen 104 FFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKPGSTLHTYFPSFLSKATPECPPELKKELISILIWCLTQDPDC 183 (469)
T ss_pred HHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcCChHH
Confidence 33445555555444 2334666555 678899987766 456678887776653 33568888888766543 2
Q ss_pred h-----chhhhHHHHHHHHHHHhcC
Q 026179 75 L-----KAMEHSSILMPVLLAFLRD 94 (242)
Q Consensus 75 ~-----~~~e~~~~~v~~L~~LL~d 94 (242)
. -+++++...+..|..+.++
T Consensus 184 ~~~Wr~lY~knl~~S~llL~~l~~~ 208 (469)
T PF10151_consen 184 FKVWRQLYKKNLKQSVLLLKHLDDE 208 (469)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2 2456777777667766653
No 146
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=21.35 E-value=4.3e+02 Score=25.92 Aligned_cols=54 Identities=28% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCchHHhhhHHHHhhc----CCc--hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhc
Q 026179 40 DPSLAAELFPYLVELQ----SSP--ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (242)
Q Consensus 40 ~p~ll~~~l~~vl~~~----~d~--~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (242)
|.+++..++|-+++-. .++ ..+|||-+.+++-.+|+++|.++...-.-|...+.
T Consensus 256 d~sLi~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g 315 (459)
T PF14764_consen 256 DGSLICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLG 315 (459)
T ss_pred CHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhc
Confidence 3445555555444321 122 35999999999999999999987766666666654
No 147
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=21.33 E-value=3.9e+02 Score=20.58 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhc---CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026179 7 DQALSLLAAANN---HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (242)
Q Consensus 7 ~~v~~lln~A~~---~~d~~~kl~~L~q~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee 72 (242)
|.++.-++.|.. .+|.+.+-..|.++++++. ++.. -|. .+...++.+.+..+-..
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~--------~L~~-~Ld--~e~g~eia~~L~~lY~y 84 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT--------ELQS-SLD--FEKGGEIADNLFRLYDY 84 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--------HHHH-TCC--TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHh-hcC--CCCCcHHHHHHHHHHHH
Confidence 444555555553 4888888899999998883 3333 222 23336666666665543
No 148
>KOG4338 consensus Predicted lipoprotein [Lipid transport and metabolism]
Probab=21.19 E-value=8.1e+02 Score=28.02 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhc----CCCchHHhhhHHHHhhcCCchh--------hHHHHHHHHHH-------HHhhchhhhHHHHHHH
Q 026179 27 SSLKQVRGILSS----ADPSLAAELFPYLVELQSSPES--------LVRKSLIETIE-------DIGLKAMEHSSILMPV 87 (242)
Q Consensus 27 ~~L~q~relll~----~~p~ll~~~l~~vl~~~~d~~~--------~vrk~~~~fie-------e~~~~~~e~~~~~v~~ 87 (242)
++|+++++++.+ +.|.-..++++..+.+.....+ .-+|.++-.+. +..+.-......++..
T Consensus 384 dqLk~i~r~~ve~~~~~~~~~ir~i~d~~l~~~gTk~ti~~~~~~v~~~k~itP~~as~ik~lv~~pfps~~ia~~liQ~ 463 (1680)
T KOG4338|consen 384 DQLKKIYRLLVETCYVKAPEKIRELIDVALALAGTKNTIQHITHHVLNQKSITPLEASRIKLLVEMPFPSLTIAEALIQL 463 (1680)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcchhHhhhhhhhhcCCCchHHHHHHHHHH
Confidence 788888865543 4676667777777766432211 22233322222 1111222345666666
Q ss_pred HHHHhc-CCC-hHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH-------------hcc
Q 026179 88 LLAFLR-DGD-SGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI-------------ALE 152 (242)
Q Consensus 88 L~~LL~-d~~-~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~-------------~~d 152 (242)
+..+.. ++| +.+...++.+++++-+.++ |+++-.+-....-.+.-|+.-.+++....+. +-.
T Consensus 464 ~esf~~i~~d~~~lrQaa~l~a~t~V~~v~---~~~~~~~~~~~iVq~~~~e~~ek~~n~~~q~~~~~~t~y~kvl~LK~ 540 (1680)
T KOG4338|consen 464 LESFHPISEDAEVLRQAAWLAAGTAVRGVF---CKKPEACEINPIVQEIPRELKEKYLNVYMQHFGNARTRYEKVLALKT 540 (1680)
T ss_pred HHhhcccCcccHHHHHHHHHhhchHhhhhh---hcCchhhhhchhhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 666554 344 6777778888888766666 2222111111133456677766666555442 112
Q ss_pred CCCCchHHHHH
Q 026179 153 PGLVGTKLLAL 163 (242)
Q Consensus 153 ~~n~Gvr~~ai 163 (242)
=+|.|+.+..+
T Consensus 541 LgN~gl~lS~~ 551 (1680)
T KOG4338|consen 541 LGNAGLDLSVY 551 (1680)
T ss_pred Hhhhhhhccch
Confidence 37777777777
No 149
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.10 E-value=6.6e+02 Score=23.58 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 026179 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (242)
Q Consensus 32 ~relll~~~p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~ 89 (242)
..+.+-..||.-.-.++-.+++-+.|+..-.||.+.-..|+++..+++.+..++.+..
T Consensus 237 ~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 237 LHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 3333333444333344445555444555566666666666666666655555554443
No 150
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=20.88 E-value=6.5e+02 Score=23.03 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhcCCChHHHHHHHH
Q 026179 27 SSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (242)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~l~~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~ 105 (242)
+.+++|-..+. -..++|..+-+. ...++.++..-+..++...|.-.-|.+. .-..+.+...+.++=+.-.
T Consensus 130 ~~~k~A~~~fq-----~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~----~~ka~~~~~~~~liAKLa~ 200 (377)
T PF03097_consen 130 EGLKEACNYFQ-----RAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECF----YEKAIADKKKPSLIAKLAA 200 (377)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHH----HHHHHHTTG-HHHHHHHHH
T ss_pred hhHHHHHHHHH-----HHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHH----HHHHHHccCchHHHHHHHH
Confidence 55666666553 124455544443 3445667888888888877765444322 1111122334444333444
Q ss_pred hhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHHhhhcc
Q 026179 106 CGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETHVLLFT 174 (242)
Q Consensus 106 ~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (242)
.+...|..+...+ ............|..+..+|...+.- ..+.+..|.-++.++..+..+-.-.
T Consensus 201 ~~~~~Y~~a~~~l-----~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 201 QASELYDEAHEAL-----QSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 4578999998444 32222223468899999999988542 2357888999988888777655444
No 151
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.87 E-value=1.3e+02 Score=32.37 Aligned_cols=72 Identities=21% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHhhc----hhhhHHHHHHHHHHHhcCC--ChHHHHHHHHhh-hhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026179 67 IETIEDIGLK----AMEHSSILMPVLLAFLRDG--DSGVAGKSIVCG-TNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (242)
Q Consensus 67 ~~fiee~~~~----~~e~~~~~v~~L~~LL~d~--~~~V~K~aI~~~-~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (242)
+-|+|.+|.. .+++-+..++.+..||+|- .|.=.-..+.|+ +-|.|..- +|+.+. .-++..|+..
T Consensus 1191 iiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsaliLPvmq-----kWiRRl---dkdesywdma 1262 (1777)
T KOG1846|consen 1191 IIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALILPVMQ-----KWIRRL---DKDESYWDMA 1262 (1777)
T ss_pred HHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHHHHHHH-----HHHHHh---chhhhhHHHH
Confidence 4588888742 4566666677777777763 221111122232 23445544 677654 4566777766
Q ss_pred H-HHHHHH
Q 026179 140 V-RFKDAV 146 (242)
Q Consensus 140 ~-~~K~~I 146 (242)
. .+|..|
T Consensus 1263 kaifKhaI 1270 (1777)
T KOG1846|consen 1263 KAIFKHAI 1270 (1777)
T ss_pred HHHHHHHH
Confidence 6 445443
No 152
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=1.2e+03 Score=26.11 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHh-----hhHHHHhhcCCchhhHHHHHHHHHHHH-----h--
Q 026179 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAE-----LFPYLVELQSSPESLVRKSLIETIEDI-----G-- 74 (242)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~-----~l~~vl~~~~d~~~~vrk~~~~fiee~-----~-- 74 (242)
|++++++..-.-+. +-++.|-.|-=-++..+|+|.|. ++|+++.--.-++..+-|..+..|++. |
T Consensus 2006 ek~lelm~~~~peq---h~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~ 2082 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQ---HELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCD 2082 (2235)
T ss_pred HHHHHHhcCCCccc---chhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHH
Confidence 45555554333222 35777777777677889988865 577776321111111113333333331 2
Q ss_pred ---------------hchhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026179 75 ---------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (242)
Q Consensus 75 ---------------~~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (242)
++.+..+.-..++|..+..-+....+-++..| .+.|.++.++ .|+--+.++.+.+.-=+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~--gLvpyLL~LL--d~~tL~~~~~~aas~A~Iv 2158 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKC--GLVPYLLQLL--DSSTLNGVSNGAAARAEIV 2158 (2235)
T ss_pred HHhccccchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhcc--CcHHHHHHHh--ccccccccCchhHHHHHHH
Confidence 24455666666677666543333333344444 3566666555 4443233445566666666
Q ss_pred HHHHHHHHH
Q 026179 140 VRFKDAVFA 148 (242)
Q Consensus 140 ~~~K~~Il~ 148 (242)
..+|..|..
T Consensus 2159 ~aLk~~~~~ 2167 (2235)
T KOG1789|consen 2159 DALKSAILD 2167 (2235)
T ss_pred HHHHHHHHH
Confidence 677766665
No 153
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=20.27 E-value=1.1e+02 Score=29.49 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=0.0
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhc
Q 026179 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (242)
Q Consensus 41 p~ll~~~l~~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (242)
|+|.++-++.-+++..|.+.-+|++.+.=+-..|+- +.++++.++|..||+
T Consensus 56 p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 56 PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN 106 (460)
T ss_pred chhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH
No 154
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.13 E-value=5.2e+02 Score=23.00 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=39.9
Q ss_pred chhhhHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 026179 76 KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVF 147 (242)
Q Consensus 76 ~~~e~~~~~v~~L~~LL~d~~~~V~K~aI~~~~~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il 147 (242)
..+.+.+.+++.|..=|..+.+.|.+.+.++...+.+. +.. ..+.++....|+. +|..|+
T Consensus 201 s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~-y~~--------~~~~~~~~~iw~~---lk~Eil 260 (262)
T PF14500_consen 201 STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN-YGA--------DSLSPHWSTIWNA---LKFEIL 260 (262)
T ss_pred CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-CCH--------HHHHHHHHHHHHH---HHHHHc
Confidence 45678889999998888888888887777776555441 100 0133667888876 455554
Done!