BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026180
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 58 LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
+S N G IP I ++ L LNL N + G IP +G+L L LDLS+NKL G+IPQ
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS 171
+ LT L D+S+N L+GPIP QF TF F NPGLCG PL + CD S
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPS 748
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 43 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE 102
EL Y K + +IL N GEIP+ ++N L ++LS N L G IP +G L L
Sbjct: 458 ELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150
L LSNN SG IP +LG+ +L D++ NL G IP F GK
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGK 561
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%)
Query: 51 NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
N + + L NN F G+IP +++N L +L+LS N L G IP +LG+L L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 111 LSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
L G+IPQ+L + TLE + N LTG IP G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
N GEIP + +K L TL L N L G IP L N L + LSNN+L+G+IP+ +G
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 121 ELTTLEVFDVSDNLLTGPIP 140
L L + +S+N +G IP
Sbjct: 509 RLENLAILKLSNNSFSGNIP 528
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+ ++ LS N G IP+S+ +L LR L L N L+G IP L + LE+L L N L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
G+IP L T L +S+N LTG IP+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKG-LRTLNLSTNSLQ----------------------- 88
+ + LS N F GE+P S+ NL L TL+LS+N+
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 89 ---GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
G IPPTL N L SL LS N LSG IP LG L+ L + N+L G IP+
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+ + +S N G++ ++ L L++S+N+ IP LG+ L+ LD+S NKLS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIP----RGKQFNTFGKGSFDG 155
G + + T L++ ++S N GPIP + Q+ + + F G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 58 LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
+S N G+ +I+ L+ LN+S+N G IPP L L+ L L+ NK +G+IP
Sbjct: 227 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 284
Query: 118 QL-GELTTLEVFDVSDNLLTGPIP 140
L G TL D+S N G +P
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVP 308
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 16 LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLS---NLITAIILSNNSFVGEIPTSIA 72
+GP+ P L Y SL NK T + LS + +T + LS N F G +P
Sbjct: 256 FVGPI--PPLPLKSLQYLSLA-ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 73 NLKGLRTLNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQLGELT-TLEVFDV 130
+ L +L LS+N+ G +P TL + L+ LDLS N+ SG++P+ L L+ +L D+
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 131 SDNLLTGPI 139
S N +GPI
Sbjct: 373 SSNNFSGPI 381
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 58 LSNNSFVGEIPTSIAN-LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP 116
L+ N F GEIP ++ L L+LS N G +PP G+ +LESL LS+N SG++P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 117 QQ-LGELTTLEVFDVSDNLLTGPIPR 141
L ++ L+V D+S N +G +P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPE 358
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 48 KLSNLITAIILSNNSFVGEIPT--SIANLKGLRTLNLSTNSLQ--GHIPPTLGNLIVLES 103
K S +T++ LS NS G + T S+ + GL+ LN+S+N+L G + L L LE
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 152
Query: 104 LDLSNNKLSGQ------IPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
LDLS N +SG + GEL L +S N ++G + + N
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVN 198
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 58 LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
+S N G IP I ++ L LNL N + G IP +G+L L LDLS+NKL G+IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 118 QLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNS 171
+ LT L D+S+N L+GPIP QF TF F NPGLCG PL + CD S
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPS 751
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 43 ELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE 102
EL Y K + +IL N GEIP+ ++N L ++LS N L G IP +G L L
Sbjct: 461 ELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 103 SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150
L LSNN SG IP +LG+ +L D++ NL G IP F GK
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGK 564
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%)
Query: 51 NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110
N + + L NN F G+IP +++N L +L+LS N L G IP +LG+L L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 111 LSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
L G+IPQ+L + TLE + N LTG IP G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
N GEIP + +K L TL L N L G IP L N L + LSNN+L+G+IP+ +G
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 121 ELTTLEVFDVSDNLLTGPIP 140
L L + +S+N +G IP
Sbjct: 512 RLENLAILKLSNNSFSGNIP 531
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+ ++ LS N G IP+S+ +L LR L L N L+G IP L + LE+L L N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
G+IP L T L +S+N LTG IP+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKG-LRTLNLSTNSLQ----------------------- 88
+ + LS N F GE+P S+ NL L TL+LS+N+
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 89 ---GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
G IPPTL N L SL LS N LSG IP LG L+ L + N+L G IP+
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+ + +S N G++ ++ L L++S+N+ IP LG+ L+ LD+S NKLS
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 113 GQIPQQLGELTTLEVFDVSDNLLTGPIP----RGKQFNTFGKGSFDG 155
G + + T L++ ++S N GPIP + Q+ + + F G
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 283
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 58 LSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ 117
+S N G+ +I+ L+ LN+S+N G IPP L L+ L L+ NK +G+IP
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287
Query: 118 QL-GELTTLEVFDVSDNLLTGPIP 140
L G TL D+S N G +P
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVP 311
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 16 LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLS---NLITAIILSNNSFVGEIPTSIA 72
+GP+ P L Y SL NK T + LS + +T + LS N F G +P
Sbjct: 259 FVGPI--PPLPLKSLQYLSLA-ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 73 NLKGLRTLNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQLGELT-TLEVFDV 130
+ L +L LS+N+ G +P TL + L+ LDLS N+ SG++P+ L L+ +L D+
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 131 SDNLLTGPI 139
S N +GPI
Sbjct: 376 SSNNFSGPI 384
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 58 LSNNSFVGEIPTSIAN-LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP 116
L+ N F GEIP ++ L L+LS N G +PP G+ +LESL LS+N SG++P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 117 QQ-LGELTTLEVFDVSDNLLTGPIPR 141
L ++ L+V D+S N +G +P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPE 361
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 48 KLSNLITAIILSNNSFVGEIPT--SIANLKGLRTLNLSTNSLQ--GHIPPTLGNLIVLES 103
K S +T++ LS NS G + T S+ + GL+ LN+S+N+L G + L L LE
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 155
Query: 104 LDLSNNKLSGQ------IPQQLGELTTLEVFDVSDNLLTGPIPRGKQFN 146
LDLS N +SG + GEL L +S N ++G + + N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVN 201
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 24/143 (16%)
Query: 45 EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG--------------- 89
Y S L T++ +S N G+IP + ANL L ++LS N L+G
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 90 HIPPT-----LGNLIV---LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141
H+ LG + + L LDL NN++ G +PQ L +L L +VS N L G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 142 GKQFNTFGKGSFDGNPGLCGQPL 164
G F ++ N LCG PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 56 IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
+ +++ + G IP ++ +K L TL+ S N+L G +PP++ +L L + N++SG I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 116 PQQLGELTTL-EVFDVSDNLLTGPIP 140
P G + L +S N LTG IP
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIP 191
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLG 120
N+ VG IP +IA L L L ++ ++ G IP L + L +LD S N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 121 ELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150
L L N ++G IP + +F K
Sbjct: 147 SLPNLVGITFDGNRISGAIP--DSYGSFSK 174
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKL 111
L A+ LSN + I +I L L L+ NSL +P + NL L LDLS+N+L
Sbjct: 225 LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL 282
Query: 112 SGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQ 167
+ +P +LG L+ F DN++T +P +F F G+ G PL KQ
Sbjct: 283 TS-LPAELGSCFQLKYFYFFDNMVTT-LPW--EFGNLCNLQF---LGVEGNPLEKQ 331
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 8 NLTYLQDPLLGPVRYPALTYYG--FSYYSLTL-SNKGTELE-YEKLSNLITAIILSNNSF 63
NLT L D L+ + +T + LTL +N+ T+++ + L+NL + LS+N+
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL-NRLELSSNT- 140
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +I ++++ L L+ LN S+N + P L NL LE LD+S+NK+S L +LT
Sbjct: 141 ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195
Query: 124 TLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156
LE ++N ++ P G N + S +GN
Sbjct: 196 NLESLIATNNQISDITPLGILTN-LDELSLNGN 227
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 182 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 8 NLTYLQDPLLGPVRYPALTYYG--FSYYSLTL-SNKGTELE-YEKLSNLITAIILSNNSF 63
NLT L D L+ + +T + LTL +N+ T+++ + L+NL + LS+N+
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL-NRLELSSNT- 140
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +I ++++ L L+ L+ S+N + P L NL LE LD+S+NK+S L +LT
Sbjct: 141 ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195
Query: 124 TLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156
LE ++N ++ P G N + S +GN
Sbjct: 196 NLESLIATNNQISDITPLGILTN-LDELSLNGN 227
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 182 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 8 NLTYLQDPLLGPVRYPALTYYG--FSYYSLTL-SNKGTELE-YEKLSNLITAIILSNNSF 63
NLT L D L+ + +T + LTL +N+ T+++ + L+NL + LS+N+
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL-NRLELSSNT- 140
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +I ++++ L L+ L+ S+N + P L NL LE LD+S+NK+S L +LT
Sbjct: 141 ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195
Query: 124 TLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156
LE ++N ++ P G N + S +GN
Sbjct: 196 NLESLIATNNQISDITPLGILTN-LDELSLNGN 227
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 182 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 236
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 73 NLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL--TTLEVFD 129
NLK L L+LS N ++ ++ P+ G L L+S+D S+N++ +L L TL F
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 130 VSDNLLTG--PIPRGKQFNTF 148
++ N L + GK N F
Sbjct: 181 LAANSLYSRVSVDWGKCMNPF 201
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 46 YEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTLNLSTNSL----QGHIPPTLGNLIV 100
+E LS+L ++ N++++ +P + ++L LR L+L++N L +P L
Sbjct: 476 FEGLSHL--QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL----- 528
Query: 101 LESLDLSNNKLSGQIPQQLGELTTLEV 127
E LD+S N+L P L+ L++
Sbjct: 529 -EILDISRNQLLAPNPDVFVSLSVLDI 554
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 49 LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
L +L + +L N+ E +R L+L+ L + L L+++ LDLS+
Sbjct: 422 LDDLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSH 472
Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLL 135
N+L +P L L LEV SDN L
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 49 LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN 108
L +L + +L N+ E +R L+L+ L + L L+++ LDLS+
Sbjct: 422 LDDLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSH 472
Query: 109 NKLSGQIPQQLGELTTLEVFDVSDNLL 135
N+L +P L L LEV SDN L
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNAL 498
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSG 113
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSG 113
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSG 113
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKL 111
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKL 111
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKL 111
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSG 113
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 71 IANLKGLRTLNLSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSG 113
I +LK L+ LN++ N +Q +P NL LE LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 54 TAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
TA++ N+ + EI NLK L TL L N + P L+ LE L LS N+L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 113 GQIPQQLGELTTLEVFDVSDNLLT 136
++P+++ + TL+ V +N +T
Sbjct: 114 -ELPEKMPK--TLQELRVHENEIT 134
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+T + L N S+ L L L LS NS+ +L N L L L+NNKL
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 113 GQIPQQLGELTTLEVFDVSDN 133
++P L + ++V + +N
Sbjct: 254 -KVPGGLADHKYIQVVYLHNN 273
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 54 TAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
TA++ N+ + EI NLK L TL L N + P L+ LE L LS N+L
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 113 GQIPQQLGELTTLEVFDVSDNLLT 136
++P+++ + TL+ V +N +T
Sbjct: 114 -ELPEKMPK--TLQELRVHENEIT 134
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112
+T + L N S+ L L L LS NS+ +L N L L L+NNKL
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 113 GQIPQQLGELTTLEVFDVSDN 133
++P L + ++V + +N
Sbjct: 254 -KVPGGLADHKYIQVVYLHNN 273
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +P SIANL+ L++L + + L + P + +L LE LDL P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 124 TLEVFDVSD--NLLTGPI 139
L+ + D NLLT P+
Sbjct: 254 PLKRLILKDCSNLLTLPL 271
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNN 109
SN + +I + + E+P SI R LNL NS+Q T +L LE L LS N
Sbjct: 13 SNQASRVICTRRE-LAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN 69
Query: 110 ---KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157
K+ L L TLE+FD + L T P + + + NP
Sbjct: 70 LVRKIEVGAFNGLPSLNTLELFD--NRLTTVPTQAFEYLSKLRELWLRNNP 118
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNN 109
SN + +I + E+P SI R LNL NS+Q T +L LE L LS N
Sbjct: 13 SNQASRVICTRREL-AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN 69
Query: 110 ---KLSGQIPQQLGELTTLEVFD 129
K+ L L TLE+FD
Sbjct: 70 LVRKIEVGAFNGLPSLNTLELFD 92
>pdb|3NDQ|A Chain A, Structure Of Human Tfiis Domain Ii
Length = 108
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
+ + + I+NLK + NL N L G+IPP L + E +
Sbjct: 63 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEM 104
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 95 LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD 154
L NL LE LD+S+NK+S L +LT LE ++N ++ P G N + S +
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 224
Query: 155 GN 156
GN
Sbjct: 225 GN 226
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 181 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 236 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 95 LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD 154
L NL LE LD+S+NK+S L +LT LE ++N ++ P G N + S +
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 224
Query: 155 GN 156
GN
Sbjct: 225 GN 226
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 181 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 236 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 95 LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD 154
L NL LE LD+S+NK+S L +LT LE ++N ++ P G N + S +
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 229
Query: 155 GN 156
GN
Sbjct: 230 GN 231
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 186 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 240
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 95 LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD 154
L NL LE LD+S+NK+S L +LT LE ++N ++ P G N + S +
Sbjct: 172 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 228
Query: 155 GN 156
GN
Sbjct: 229 GN 230
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 38 SNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96
SNK +++ KL+NL ++I +NN P I L L L+L+ N L+ TL
Sbjct: 185 SNKVSDISVLAKLTNL-ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 239
Query: 97 NLIVLESLDLSNNKLSGQIPQQ-LGELTTLEV 127
+L L LDL+NN++S P L +LT L++
Sbjct: 240 SLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 56 IILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI 115
++ N + +P I K + L L+ N + P +L+ L+ L ++NKL+
Sbjct: 16 LVNCQNIRLASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 116 PQQLGELTTLEVFDVSDNLLTGPIPRG 142
+LT L D++DN L IPRG
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKS-IPRG 99
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 60 NNSFVGEI-PTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ 118
N + V + P + NL LRTL L +N L+ L L LD+S NK+ +
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123
Query: 119 LGELTTLEVFDVSDN 133
+L L+ +V DN
Sbjct: 124 FQDLYNLKSLEVGDN 138
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 46 YEKLSNLITAIILSNNSFVGEIPTSIAN-LKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
++KL+NL +++ N + +P + + L L L L N LQ L L L
Sbjct: 105 FDKLTNLKELVLVENQ--LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRL 162
Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
DL NN+L +LT L+ ++DN L +P G
Sbjct: 163 DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 51 NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI----PPTLGNLIVLESLDL 106
NL+ ++LS N F S AN L L + N + H+ LGN L++LDL
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN---LQTLDL 354
Query: 107 SNNKL--SGQIPQQLGELTTLEVFDVSDN 133
S+N + S QL L+ L+ ++S N
Sbjct: 355 SHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 26 TYYGFSYYSLTLSNKGTELEYEKLSNL------------ITAIIL---SNNSFVGEIPTS 70
T Y F NKG ++ E L+ L + A I+ NNSF +
Sbjct: 332 TLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSF------T 385
Query: 71 IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
+ LKG + N++ + ++G I ++ +N L+ ++P LGEL
Sbjct: 386 VEALKGQAEVRALENTVH-EVTTSIGKRIFDHAIRYPHNGLTTELPTDLGEL 436
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 26 TYYGFSYYSLTLSNKGTELEYEKLSNL------------ITAIIL---SNNSFVGEIPTS 70
T Y F NKG ++ E L+ L + A I+ NNSF +
Sbjct: 332 TLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSF------T 385
Query: 71 IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGEL 122
+ LKG + N++ + ++G I ++ +N L+ ++P LGEL
Sbjct: 386 VEALKGQAEVRALENTVH-EVTTSIGKRIFDHAIRYPHNGLTTELPTDLGEL 436
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 46 YEKLSNLITAIILSNNSFVGEIPTSIAN-LKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104
++KL+NL +++ N + +P + + L L LNL+ N LQ L L L
Sbjct: 105 FDKLTNLKELVLVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNPGLCGQ 162
DLS N+L +LT L+ + N L +P G + + NP C
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 221
Query: 163 P 163
P
Sbjct: 222 P 222
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 70 SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
++ +L L+ LN+ +N + L NL L SL L+NN+L + + +G LT L
Sbjct: 260 AVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 130 VSDNLLTGPIP 140
+S N +T P
Sbjct: 318 LSQNHITDIRP 328
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 74 LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126
L LR LNL+ +L+ P L LI L+ LDLS N LS P L L+
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +PT I + L L N + P L L LDL NN+L+ +LT
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 124 TLEVFDVSDNLLTGPIPRG 142
L ++DN L IPRG
Sbjct: 79 QLTQLSLNDNQLKS-IPRG 96
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +PT I + L L N + P L L LDL NN+L+ +LT
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 124 TLEVFDVSDNLLTGPIPRG 142
L ++DN L IPRG
Sbjct: 79 QLTQLSLNDNQLKS-IPRG 96
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 64 VGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT 123
+ +PT I + L L N + P L L LDL NN+L+ +LT
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 124 TLEVFDVSDNLLTGPIPRG 142
L ++DN L IPRG
Sbjct: 87 QLTQLSLNDNQLKS-IPRG 104
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 70 SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
+ ANL+ L + N+++G +LG+L E LDLS+N LS G L++L+ +
Sbjct: 74 ACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLN 130
Query: 130 VSDN 133
+ N
Sbjct: 131 LMGN 134
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 74 LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVF 128
L L+ L L+TN LQ L L++L LS N+L +P +LG+L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 74 LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVF 128
L L+ L L+TN LQ L L++L LS N+L +P +LG+L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 70 SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129
+ ANL+ L + N+++G +LG+L E LDLS+N LS G L++L+ +
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLN 104
Query: 130 VSDN 133
+ N
Sbjct: 105 LMGN 108
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 96 GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
G L VL +LDLS+N+L +P L L V DVS N LT +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 96 GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142
G L VL +LDLS+N+L +P L L V DVS N LT +P G
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLG 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,177,092
Number of Sequences: 62578
Number of extensions: 292136
Number of successful extensions: 687
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 158
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)