Query 026180
Match_columns 242
No_of_seqs 217 out of 3134
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.7E-21 1.4E-25 183.4 13.7 160 2-163 433-611 (968)
2 PLN03150 hypothetical protein; 99.8 1.5E-18 3.3E-23 159.1 12.1 117 53-169 420-538 (623)
3 PLN00113 leucine-rich repeat r 99.7 3.3E-17 7.2E-22 157.9 11.4 160 2-163 409-588 (968)
4 KOG4194 Membrane glycoprotein 99.7 9.1E-19 2E-23 152.8 -1.0 158 2-165 298-458 (873)
5 KOG4194 Membrane glycoprotein 99.6 2.2E-16 4.8E-21 138.1 0.9 133 2-140 202-334 (873)
6 KOG4237 Extracellular matrix p 99.6 4.8E-16 1E-20 130.3 0.5 95 71-165 270-365 (498)
7 KOG0617 Ras suppressor protein 99.5 6.1E-16 1.3E-20 116.6 -5.3 147 2-159 38-186 (264)
8 KOG0617 Ras suppressor protein 99.4 1.9E-15 4.1E-20 114.0 -4.5 130 21-157 31-161 (264)
9 KOG0444 Cytoskeletal regulator 99.4 1.1E-14 2.5E-19 128.6 -3.1 132 1-142 130-286 (1255)
10 PF14580 LRR_9: Leucine-rich r 99.4 6E-13 1.3E-17 102.7 4.2 124 1-136 1-126 (175)
11 KOG0444 Cytoskeletal regulator 99.3 2.9E-13 6.4E-18 119.9 -0.9 152 2-164 227-380 (1255)
12 KOG4237 Extracellular matrix p 99.3 1.4E-13 3.1E-18 115.7 -2.9 154 2-165 51-207 (498)
13 KOG0472 Leucine-rich repeat pr 99.2 2E-13 4.4E-18 115.1 -4.3 148 2-159 393-541 (565)
14 PLN03150 hypothetical protein; 99.2 1.6E-11 3.4E-16 113.1 7.0 112 25-140 420-532 (623)
15 PF14580 LRR_9: Leucine-rich r 99.2 6.6E-12 1.4E-16 96.9 2.6 118 2-130 24-147 (175)
16 KOG1259 Nischarin, modulator o 99.2 3.7E-12 8E-17 104.1 -0.7 124 2-137 289-413 (490)
17 PRK15387 E3 ubiquitin-protein 99.2 3.7E-11 7.9E-16 111.7 5.6 108 24-140 343-462 (788)
18 KOG0472 Leucine-rich repeat pr 99.2 3.8E-12 8.2E-17 107.5 -0.9 125 2-136 417-541 (565)
19 KOG0618 Serine/threonine phosp 99.1 3.8E-12 8.2E-17 116.8 -2.4 106 50-158 382-488 (1081)
20 PRK15370 E3 ubiquitin-protein 99.1 9.1E-11 2E-15 109.3 6.5 93 2-112 204-296 (754)
21 PRK15387 E3 ubiquitin-protein 99.1 1.6E-10 3.4E-15 107.6 6.5 35 124-159 423-458 (788)
22 PRK15370 E3 ubiquitin-protein 99.1 1.1E-10 2.4E-15 108.7 5.1 72 2-88 225-296 (754)
23 PF13855 LRR_8: Leucine rich r 99.0 1.2E-10 2.6E-15 74.3 2.8 59 52-110 2-60 (61)
24 PF13855 LRR_8: Leucine rich r 99.0 2.1E-10 4.5E-15 73.2 3.0 61 75-135 1-61 (61)
25 KOG0618 Serine/threonine phosp 99.0 1.3E-11 2.9E-16 113.3 -5.3 149 2-156 292-462 (1081)
26 cd00116 LRR_RI Leucine-rich re 98.9 3.7E-10 7.9E-15 95.6 -0.0 86 51-136 137-234 (319)
27 PLN03210 Resistant to P. syrin 98.9 1.3E-08 2.8E-13 100.1 10.5 128 2-140 594-721 (1153)
28 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 93.9 -1.7 128 21-158 282-411 (490)
29 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.7E-15 102.1 -3.3 122 2-136 126-247 (722)
30 KOG0532 Leucine-rich repeat (L 98.8 4.3E-10 9.4E-15 98.8 -1.4 144 2-159 103-247 (722)
31 COG4886 Leucine-rich repeat (L 98.8 3E-09 6.5E-14 93.0 3.0 144 2-157 121-288 (394)
32 PLN03210 Resistant to P. syrin 98.7 6.1E-08 1.3E-12 95.5 9.6 106 50-157 610-715 (1153)
33 COG4886 Leucine-rich repeat (L 98.7 7.7E-09 1.7E-13 90.4 2.7 122 2-135 98-221 (394)
34 cd00116 LRR_RI Leucine-rich re 98.7 2.5E-09 5.4E-14 90.4 -0.9 114 23-136 137-263 (319)
35 KOG3207 Beta-tubulin folding c 98.6 5.2E-09 1.1E-13 89.5 -1.8 131 2-136 151-314 (505)
36 KOG4579 Leucine-rich repeat (L 98.5 1.2E-09 2.6E-14 79.8 -6.5 109 51-163 53-163 (177)
37 KOG1859 Leucine-rich repeat pr 98.4 5E-09 1.1E-13 94.7 -6.0 131 21-161 162-294 (1096)
38 KOG4579 Leucine-rich repeat (L 98.4 2.6E-08 5.6E-13 72.9 -2.2 134 2-142 32-165 (177)
39 KOG3207 Beta-tubulin folding c 98.3 1.7E-07 3.7E-12 80.4 1.6 112 21-137 220-340 (505)
40 KOG4658 Apoptotic ATPase [Sign 98.3 2.8E-07 6.1E-12 87.7 2.7 122 4-134 530-653 (889)
41 KOG0531 Protein phosphatase 1, 98.2 2.2E-07 4.8E-12 81.9 -1.6 98 2-111 100-198 (414)
42 KOG0531 Protein phosphatase 1, 98.1 5.4E-07 1.2E-11 79.4 0.3 121 3-136 78-199 (414)
43 KOG1644 U2-associated snRNP A' 98.1 4.4E-06 9.5E-11 65.1 5.2 85 50-136 41-126 (233)
44 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 49.8 3.4 36 52-88 2-37 (44)
45 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.4E-11 50.0 2.8 36 76-112 2-37 (44)
46 KOG4658 Apoptotic ATPase [Sign 98.0 4.6E-06 1E-10 79.5 3.2 115 21-142 521-637 (889)
47 KOG1859 Leucine-rich repeat pr 98.0 1.2E-07 2.7E-12 86.0 -7.1 122 3-136 170-292 (1096)
48 KOG1644 U2-associated snRNP A' 97.8 2.3E-05 4.9E-10 61.2 3.3 120 2-132 24-149 (233)
49 PRK15386 type III secretion pr 97.6 0.00014 3E-09 63.4 6.0 109 2-133 57-187 (426)
50 KOG3665 ZYG-1-like serine/thre 97.5 6.6E-05 1.4E-09 70.0 3.1 111 21-137 146-264 (699)
51 KOG1909 Ran GTPase-activating 97.4 2.9E-05 6.3E-10 65.2 -0.8 113 24-136 158-283 (382)
52 PF13306 LRR_5: Leucine rich r 97.3 0.00037 7.9E-09 50.7 4.8 112 10-132 1-112 (129)
53 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 58.1 2.4 101 21-129 41-149 (260)
54 KOG2982 Uncharacterized conser 97.2 0.00019 4E-09 59.5 1.8 98 39-136 59-159 (418)
55 KOG1909 Ran GTPase-activating 97.2 0.00014 3E-09 61.2 0.9 116 21-136 90-226 (382)
56 PF13306 LRR_5: Leucine rich r 97.1 0.00047 1E-08 50.2 3.2 109 7-126 21-129 (129)
57 KOG2982 Uncharacterized conser 97.0 0.00012 2.6E-09 60.6 -0.9 80 2-85 76-156 (418)
58 KOG3665 ZYG-1-like serine/thre 96.8 0.00076 1.6E-08 63.1 2.4 111 22-136 121-233 (699)
59 PRK15386 type III secretion pr 96.7 0.003 6.5E-08 55.2 5.2 97 22-136 51-169 (426)
60 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.8E-08 52.6 2.3 84 50-137 42-130 (260)
61 PF00560 LRR_1: Leucine Rich R 95.8 0.004 8.6E-08 30.7 0.8 18 53-71 2-19 (22)
62 PF00560 LRR_1: Leucine Rich R 95.6 0.0036 7.8E-08 30.8 0.3 18 77-95 2-19 (22)
63 KOG2123 Uncharacterized conser 95.5 0.00075 1.6E-08 55.5 -3.9 100 22-129 18-123 (388)
64 KOG0473 Leucine-rich repeat pr 95.3 0.0002 4.2E-09 57.4 -7.7 99 5-112 26-124 (326)
65 KOG0473 Leucine-rich repeat pr 95.3 0.00028 6E-09 56.5 -6.9 84 50-136 41-124 (326)
66 COG5238 RNA1 Ran GTPase-activa 95.2 0.028 6E-07 46.4 4.2 38 51-88 92-133 (388)
67 KOG2123 Uncharacterized conser 93.6 0.0052 1.1E-07 50.7 -3.4 90 6-105 28-123 (388)
68 PF13504 LRR_7: Leucine rich r 93.3 0.061 1.3E-06 24.6 1.4 12 53-64 3-14 (17)
69 PF08693 SKG6: Transmembrane a 92.9 0.11 2.4E-06 29.6 2.3 25 191-215 13-37 (40)
70 COG5238 RNA1 Ran GTPase-activa 92.2 0.14 3E-06 42.4 2.9 42 71-112 88-133 (388)
71 smart00369 LRR_TYP Leucine-ric 91.8 0.16 3.4E-06 25.8 1.9 13 76-88 3-15 (26)
72 smart00370 LRR Leucine-rich re 91.8 0.16 3.4E-06 25.8 1.9 13 76-88 3-15 (26)
73 KOG2120 SCF ubiquitin ligase, 91.5 0.03 6.6E-07 46.8 -1.5 85 24-111 186-272 (419)
74 smart00369 LRR_TYP Leucine-ric 91.5 0.19 4.1E-06 25.5 2.1 16 99-114 2-17 (26)
75 smart00370 LRR Leucine-rich re 91.5 0.19 4.1E-06 25.5 2.1 16 99-114 2-17 (26)
76 PF08374 Protocadherin: Protoc 89.2 0.35 7.7E-06 38.2 2.7 18 192-209 38-55 (221)
77 PF04478 Mid2: Mid2 like cell 88.6 0.5 1.1E-05 35.3 3.1 25 189-213 50-74 (154)
78 PF01102 Glycophorin_A: Glycop 86.1 0.21 4.6E-06 36.1 -0.1 13 195-207 67-79 (122)
79 KOG2120 SCF ubiquitin ligase, 86.1 0.19 4.1E-06 42.2 -0.4 109 21-133 258-373 (419)
80 PF13516 LRR_6: Leucine Rich r 84.1 0.26 5.7E-06 24.4 -0.3 13 52-64 3-15 (24)
81 PF01102 Glycophorin_A: Glycop 83.4 0.6 1.3E-05 33.8 1.2 27 189-215 65-91 (122)
82 smart00364 LRR_BAC Leucine-ric 82.0 1 2.3E-05 23.0 1.4 17 100-117 3-19 (26)
83 PF13908 Shisa: Wnt and FGF in 81.7 2.3 5E-05 33.0 4.0 22 191-212 78-99 (179)
84 PF15102 TMEM154: TMEM154 prot 81.3 0.93 2E-05 33.7 1.5 18 205-222 72-89 (146)
85 TIGR00864 PCC polycystin catio 80.2 0.72 1.6E-05 49.2 0.8 37 3-41 1-37 (2740)
86 smart00365 LRR_SD22 Leucine-ri 79.6 1.8 3.9E-05 22.1 1.8 13 100-112 3-15 (26)
87 PF15069 FAM163: FAM163 family 79.2 3.3 7.2E-05 30.6 3.8 29 191-219 5-33 (143)
88 PF12273 RCR: Chitin synthesis 76.4 2 4.2E-05 31.5 2.0 19 197-215 4-22 (130)
89 PF02439 Adeno_E3_CR2: Adenovi 74.4 2.6 5.6E-05 23.6 1.6 12 196-207 7-18 (38)
90 PF05454 DAG1: Dystroglycan (D 73.9 1 2.3E-05 37.6 0.0 31 194-224 150-180 (290)
91 smart00368 LRR_RI Leucine rich 73.0 3.2 6.9E-05 21.4 1.8 11 77-87 4-14 (28)
92 PF15050 SCIMP: SCIMP protein 71.4 0.98 2.1E-05 32.2 -0.6 7 190-196 9-15 (133)
93 PF01034 Syndecan: Syndecan do 70.2 1.2 2.7E-05 28.0 -0.3 18 193-210 14-31 (64)
94 TIGR00864 PCC polycystin catio 68.9 3.7 8E-05 44.2 2.6 32 81-112 1-32 (2740)
95 KOG3864 Uncharacterized conser 68.4 0.76 1.7E-05 36.3 -1.8 81 52-132 102-185 (221)
96 PF08374 Protocadherin: Protoc 66.0 5.4 0.00012 31.7 2.4 25 188-212 37-61 (221)
97 KOG4308 LRR-containing protein 65.8 0.21 4.5E-06 45.0 -6.2 86 51-136 204-303 (478)
98 PF06697 DUF1191: Protein of u 64.7 14 0.0003 30.8 4.6 9 194-202 216-224 (278)
99 PTZ00382 Variant-specific surf 64.0 3.7 8E-05 28.4 1.1 13 189-201 67-79 (96)
100 PF04478 Mid2: Mid2 like cell 63.4 3.6 7.8E-05 30.9 1.0 26 191-216 48-73 (154)
101 PF01299 Lamp: Lysosome-associ 62.3 3.1 6.7E-05 35.3 0.5 26 190-215 272-297 (306)
102 PF14575 EphA2_TM: Ephrin type 60.3 4.7 0.0001 26.5 1.0 6 198-203 7-12 (75)
103 PF05808 Podoplanin: Podoplani 58.6 3.2 7E-05 31.4 0.0 25 191-215 132-156 (162)
104 PF03229 Alpha_GJ: Alphavirus 55.9 22 0.00048 25.3 3.8 25 191-215 86-110 (126)
105 PF02038 ATP1G1_PLM_MAT8: ATP1 54.9 16 0.00035 21.8 2.5 22 195-216 17-38 (50)
106 PF03672 UPF0154: Uncharacteri 54.8 14 0.0003 23.4 2.4 18 197-214 3-20 (64)
107 PF07213 DAP10: DAP10 membrane 54.5 9.7 0.00021 25.2 1.7 16 194-209 36-51 (79)
108 KOG1947 Leucine rich repeat pr 53.1 8.8 0.00019 34.0 1.9 62 73-134 241-306 (482)
109 PHA03265 envelope glycoprotein 52.9 18 0.0004 31.0 3.5 25 191-215 350-375 (402)
110 KOG3763 mRNA export factor TAP 51.0 3.3 7.1E-05 37.7 -1.2 39 21-61 216-254 (585)
111 PF14991 MLANA: Protein melan- 50.2 4.7 0.0001 28.5 -0.2 21 195-215 29-49 (118)
112 PF07204 Orthoreo_P10: Orthore 50.1 10 0.00023 25.8 1.4 29 189-219 41-69 (98)
113 PF03302 VSP: Giardia variant- 49.5 12 0.00025 33.1 2.0 22 192-213 369-390 (397)
114 PF12768 Rax2: Cortical protei 48.4 18 0.00038 30.3 2.8 33 191-223 230-262 (281)
115 PF11770 GAPT: GRB2-binding ad 46.3 3.4 7.4E-05 30.7 -1.5 26 193-218 12-37 (158)
116 PF10577 UPF0560: Uncharacteri 46.2 9.2 0.0002 36.4 0.9 15 207-221 291-305 (807)
117 KOG3763 mRNA export factor TAP 45.8 9.7 0.00021 34.8 0.9 63 50-113 217-284 (585)
118 KOG1947 Leucine rich repeat pr 45.3 9.7 0.00021 33.7 0.9 108 21-129 212-327 (482)
119 PF07406 NICE-3: NICE-3 protei 45.1 26 0.00055 27.5 3.1 28 197-224 15-42 (186)
120 PF14610 DUF4448: Protein of u 45.0 14 0.0003 28.9 1.6 26 189-214 156-181 (189)
121 PF04995 CcmD: Heme exporter p 42.3 13 0.00028 21.7 0.8 25 195-219 9-33 (46)
122 PF12877 DUF3827: Domain of un 42.1 24 0.00051 32.9 2.8 8 191-198 269-276 (684)
123 PF15050 SCIMP: SCIMP protein 38.9 17 0.00036 26.1 1.1 18 195-212 11-28 (133)
124 COG3763 Uncharacterized protei 38.4 18 0.0004 23.2 1.1 19 195-213 8-26 (71)
125 PRK00523 hypothetical protein; 38.2 27 0.00059 22.6 1.9 21 201-224 15-35 (72)
126 KOG4308 LRR-containing protein 38.2 1.7 3.6E-05 39.3 -5.1 93 21-113 202-304 (478)
127 PF04689 S1FA: DNA binding pro 35.8 14 0.0003 23.3 0.3 6 192-197 15-20 (69)
128 PRK11677 hypothetical protein; 35.7 12 0.00027 27.5 0.0 17 198-214 7-23 (134)
129 PF02480 Herpes_gE: Alphaherpe 35.6 12 0.00027 33.4 0.0 16 192-207 353-368 (439)
130 PRK01844 hypothetical protein; 35.1 34 0.00074 22.2 2.0 23 199-224 12-34 (72)
131 PF14851 FAM176: FAM176 family 34.9 21 0.00045 27.0 1.1 23 191-213 24-46 (153)
132 PF13703 PepSY_TM_2: PepSY-ass 33.8 25 0.00053 23.6 1.3 18 196-213 21-38 (88)
133 PF06365 CD34_antigen: CD34/Po 31.7 33 0.00071 27.2 1.8 14 211-224 123-136 (202)
134 PF06667 PspB: Phage shock pro 30.6 22 0.00048 23.3 0.6 19 201-219 13-31 (75)
135 TIGR03141 cytochro_ccmD heme e 30.3 32 0.00069 20.0 1.2 21 195-215 10-30 (45)
136 COG3105 Uncharacterized protei 29.7 17 0.00037 26.5 -0.1 18 197-214 11-28 (138)
137 PF04971 Lysis_S: Lysis protei 29.5 50 0.0011 21.2 2.0 24 192-215 33-56 (68)
138 PF06295 DUF1043: Protein of u 29.3 33 0.00071 25.0 1.4 15 199-213 4-18 (128)
139 PF02158 Neuregulin: Neureguli 29.1 18 0.0004 31.4 0.0 22 193-214 11-33 (404)
140 PF15069 FAM163: FAM163 family 28.6 57 0.0012 24.2 2.5 30 195-224 5-34 (143)
141 PF11980 DUF3481: Domain of un 28.2 25 0.00054 23.5 0.5 16 190-205 16-31 (87)
142 PF14851 FAM176: FAM176 family 28.0 28 0.00061 26.3 0.8 28 193-220 22-49 (153)
143 smart00367 LRR_CC Leucine-rich 27.0 46 0.001 16.4 1.3 13 122-134 1-13 (26)
144 PF15298 AJAP1_PANP_C: AJAP1/P 27.0 1.2E+02 0.0025 24.0 4.0 22 192-213 101-122 (205)
145 smart00082 LRRCT Leucine rich 27.0 33 0.00072 19.9 0.9 10 156-165 1-10 (51)
146 PF05795 Plasmodium_Vir: Plasm 26.9 95 0.0021 26.3 4.0 14 201-214 290-303 (354)
147 PF13908 Shisa: Wnt and FGF in 22.2 53 0.0012 25.3 1.4 8 202-209 92-99 (179)
148 PF10669 Phage_Gp23: Protein g 22.1 31 0.00068 23.7 0.1 14 211-224 37-50 (121)
149 PF05624 LSR: Lipolysis stimul 22.0 1E+02 0.0023 18.0 2.2 16 196-211 7-22 (49)
150 PHA03099 epidermal growth fact 22.0 54 0.0012 23.9 1.3 20 191-210 99-118 (139)
151 PHA03164 hypothetical protein; 21.8 27 0.00058 22.8 -0.3 17 195-211 64-80 (88)
152 PF12301 CD99L2: CD99 antigen 21.7 53 0.0012 25.3 1.3 44 176-219 102-145 (169)
153 PF11353 DUF3153: Protein of u 21.7 62 0.0013 25.7 1.7 28 188-215 178-205 (209)
154 PF02430 AMA-1: Apical membran 21.5 31 0.00067 30.7 0.0 21 201-221 438-458 (471)
155 TIGR01477 RIFIN variant surfac 21.5 43 0.00092 29.0 0.8 15 198-212 313-327 (353)
156 PHA03189 UL14 tegument protein 21.4 1.1E+02 0.0024 25.9 3.1 22 215-236 314-335 (348)
157 PF10661 EssA: WXG100 protein 21.3 53 0.0012 24.5 1.2 25 193-218 120-144 (145)
158 PTZ00046 rifin; Provisional 21.2 43 0.00094 29.0 0.8 15 198-212 318-332 (358)
159 TIGR00383 corA magnesium Mg(2+ 21.0 50 0.0011 27.9 1.1 20 199-218 298-317 (318)
160 PRK14750 kdpF potassium-transp 20.9 80 0.0017 16.4 1.4 11 196-206 4-14 (29)
161 PHA02662 ORF131 putative membr 20.8 37 0.00081 27.1 0.3 29 195-223 190-218 (226)
162 PRK10132 hypothetical protein; 20.7 77 0.0017 22.4 1.9 15 189-203 86-100 (108)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.7e-21 Score=183.43 Aligned_cols=160 Identities=31% Similarity=0.473 Sum_probs=122.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC-------------------CchhhHHHhhcCccEEEccCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK-------------------GTELEYEKLSNLITAIILSNNS 62 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~~~~~~~~~~~L~~L~Ls~n~ 62 (242)
+||++|+|....+..+. .+++|+.|++++|.+...-. +..+.....+++|+.|+|++|.
T Consensus 433 L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 433 LDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred EECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 56666766655554444 55666666666655432110 0111223446778888888888
Q ss_pred CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..|+.+++++|++.|.+|..
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 88888888888899999999999999888888889999999999999999888988888899999999999999999988
Q ss_pred CCCCCcCCccccCCCCCCCCC
Q 026180 143 KQFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 143 ~~~~~~~~~~~~~n~~~c~~~ 163 (242)
..+.++....+.||+.+|+.+
T Consensus 591 ~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 591 GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred chhcccChhhhcCCccccCCc
Confidence 777788888889999999754
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=159.15 Aligned_cols=117 Identities=40% Similarity=0.730 Sum_probs=106.0
Q ss_pred ccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132 (242)
Q Consensus 53 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 132 (242)
++.|+|++|.++|.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCC--CCCcCCccccCCCCCCCCCCCCCCC
Q 026180 133 NLLTGPIPRGKQ--FNTFGKGSFDGNPGLCGQPLSKQCD 169 (242)
Q Consensus 133 N~l~~~~p~~~~--~~~~~~~~~~~n~~~c~~~~~~~c~ 169 (242)
|.++|.+|.... ......+.+.+|+.+|+.+....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999998643 2234567789999999987656674
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=3.3e-17 Score=157.94 Aligned_cols=160 Identities=29% Similarity=0.404 Sum_probs=119.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhh-----------------H--HHhhcCccEEEccCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELE-----------------Y--EKLSNLITAIILSNNS 62 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~--~~~~~~L~~L~Ls~n~ 62 (242)
++|++|+++...+..|. .+++|+.|++++|.+.......... . .....+|+.|++++|+
T Consensus 409 L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 409 VRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred EECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 35555665544444454 5666666777666655322110000 0 0012457788888888
Q ss_pred CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+++..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-CCCCcCCccccCCCCCCCCC
Q 026180 143 K-QFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 143 ~-~~~~~~~~~~~~n~~~c~~~ 163 (242)
. .+..+..+.+.+|+..+..|
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HhcCcccCEEeccCCcceeeCC
Confidence 4 35567778888888766444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=9.1e-19 Score=152.81 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=118.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|||+|.|..|...... ..++|++|+|+.|.|+..+.+.+.. +..|++|.|++|+|+.....+|..+.+|++||
T Consensus 298 L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred hccchhhhheeecchhh--hcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 57777777777777766 6667777788777777766555543 77778888888888877777788888888888
Q ss_pred ccCCCCCCCCCc---ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180 82 LSTNSLQGHIPP---TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~n~l~~~~p~---~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 158 (242)
|++|.+++.+-+ .|.+|++|+.|++.+|++..+.-..|.++..|++|+|++|.+....|....-..+..+.+....+
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF 451 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence 888888776554 36778888888888888875545578888888888888888886666554444566666777788
Q ss_pred CCCCCCC
Q 026180 159 LCGQPLS 165 (242)
Q Consensus 159 ~c~~~~~ 165 (242)
+|+|.+.
T Consensus 452 lCDCql~ 458 (873)
T KOG4194|consen 452 LCDCQLK 458 (873)
T ss_pred EEeccHH
Confidence 9999765
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-16 Score=138.08 Aligned_cols=133 Identities=23% Similarity=0.179 Sum_probs=112.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+.|+.|+|+.+|...|. .++.|+.|+|..|.|..+...++.+ +++|+.|.|..|.|+....+.|-.+.++++|+
T Consensus 202 lkLsrNrittLp~r~Fk--~L~~L~~LdLnrN~irive~ltFqg----L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFK--RLPKLESLDLNRNRIRIVEGLTFQG----LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred eecccCcccccCHHHhh--hcchhhhhhccccceeeehhhhhcC----chhhhhhhhhhcCcccccCcceeeecccceee
Confidence 45778888888888887 7888888888888888776555544 78888889999999888888899999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
|+.|+++..-..++.++..|+.|+|+.|.|+.+.++.|..+++|+.|+|++|.++..-+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 99999997778888999999999999999998889999999999999999999985444
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=4.8e-16 Score=130.31 Aligned_cols=95 Identities=25% Similarity=0.277 Sum_probs=71.4
Q ss_pred ccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcC
Q 026180 71 IANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFG 149 (242)
Q Consensus 71 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~ 149 (242)
|..|++|++|+|++|+|+.+.+.+|.++..++.|.|..|++.......|.++..|+.|+|.+|+++..-|... ....+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 4456677777777777777777777777777777777777776666677888899999999999997766543 234456
Q ss_pred CccccCCCCCCCCCCC
Q 026180 150 KGSFDGNPGLCGQPLS 165 (242)
Q Consensus 150 ~~~~~~n~~~c~~~~~ 165 (242)
.+.+-+|||.|+|.+.
T Consensus 350 ~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLA 365 (498)
T ss_pred eeehccCcccCccchH
Confidence 7788999999999765
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=6.1e-16 Score=116.65 Aligned_cols=147 Identities=19% Similarity=0.308 Sum_probs=115.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+-||+|.++.+|+.+- .+.+|+.|++.+|.|+-.+.... .++.|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 38 LtLSHNKl~~vppnia---~l~nlevln~~nnqie~lp~~is-----sl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIA---ELKNLEVLNLSNNQIEELPTSIS-----SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhcccCceeecCCcHH---HhhhhhhhhcccchhhhcChhhh-----hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 4588999999988762 78899999999998887655443 2778888999999988 8899999999999999
Q ss_pred ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180 82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL 159 (242)
Q Consensus 82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~ 159 (242)
|++|++.. .+|..|..+..|..|.|+.|.+. .+|..++.+.+|+.|.+..|.+. .+|... .+..+.++..+||...
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99988853 57777888888888888888887 77778888888888888888776 455443 4555666677777543
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.9e-15 Score=114.02 Aligned_cols=130 Identities=29% Similarity=0.355 Sum_probs=95.4
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
.+.+++.|.+++|.++.++.++. .+.+|+.|++++|+|+ .+|..++.++.|+.|+++-|++. ..|..|+.++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia-----~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIA-----ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCceeecCCcHH-----Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 56677778888888887765553 2667778888888887 77777788888888888888887 77888888888
Q ss_pred CCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 101 LESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 101 L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
|+.|||..|++.. .+|+.|..+..|+.|.++.|.|.-..|+...+.+++-+.+..|.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 8888888887764 36777777777888888888887555555556666666665553
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.40 E-value=1.1e-14 Score=128.63 Aligned_cols=132 Identities=30% Similarity=0.455 Sum_probs=89.4
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---------------
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG--------------- 65 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--------------- 65 (242)
++|||+|+|..||...|- .+..|-+|||++|.++..+... +-+..|++|+|++|.+..
T Consensus 130 VLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ~-----RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQI-----RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred EEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHHH-----HHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 467888888888888877 7777777888888877654332 124455556666655432
Q ss_pred ----------CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180 66 ----------EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135 (242)
Q Consensus 66 ----------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 135 (242)
-+|.++..+.+|..+|+|.|.+. ..|+.+..+++|..|+||+|+|+ .+....+...+|+.|+++.|++
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh
Confidence 24555666667777777777777 77777777777777777777777 3344455556777777777777
Q ss_pred ccCCCCC
Q 026180 136 TGPIPRG 142 (242)
Q Consensus 136 ~~~~p~~ 142 (242)
+ .+|+.
T Consensus 281 t-~LP~a 286 (1255)
T KOG0444|consen 281 T-VLPDA 286 (1255)
T ss_pred c-cchHH
Confidence 7 55654
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=6e-13 Score=102.71 Aligned_cols=124 Identities=26% Similarity=0.279 Sum_probs=42.3
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
|+.|..|-|+.++... ....+++|+|++|.|..++.-. ..+.+|+.|+|++|.|+. ++ .+..++.|++|
T Consensus 1 ~~~lt~~~i~~~~~~~----n~~~~~~L~L~~n~I~~Ie~L~-----~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L 69 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYN----NPVKLRELNLRGNQISTIENLG-----ATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTL 69 (175)
T ss_dssp ---------------------------------------S-------TT-TT--EEE-TTS--S---T-T----TT--EE
T ss_pred Cccccccccccccccc----cccccccccccccccccccchh-----hhhcCCCEEECCCCCCcc-cc-CccChhhhhhc
Confidence 6788899999999865 5668999999999999876422 126789999999999994 43 47789999999
Q ss_pred eccCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccc
Q 026180 81 NLSTNSLQGHIPPTL-GNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 136 (242)
++++|+|+ .+.+.+ ..+++|+.|++++|+|.... -..+..+++|+.|++.+|+++
T Consensus 70 ~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 70 DLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999 454444 46899999999999997532 135778999999999999997
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.29 E-value=2.9e-13 Score=119.85 Aligned_cols=152 Identities=26% Similarity=0.352 Sum_probs=131.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|||+|.+..+|.-.+ .+++|+.|+|++|.|+-...... .--+|++|+||.|+++ .+|..+..|+.|+.|+
T Consensus 227 vDlS~N~Lp~vPecly---~l~~LrrLNLS~N~iteL~~~~~-----~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLY---KLRNLRRLNLSGNKITELNMTEG-----EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred ccccccCCCcchHHHh---hhhhhheeccCcCceeeeeccHH-----HHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 6999999999998655 68899999999999997654432 2567899999999999 8999999999999999
Q ss_pred ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-CCCcCCccccCCCCC
Q 026180 82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-FNTFGKGSFDGNPGL 159 (242)
Q Consensus 82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~n~~~ 159 (242)
+.+|+++. -+|+.++.+.+|+.+..++|.+. ..|..+..|+.|+.|.|+.|.+- .+|+.+. +..+..+++..||.+
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 99999853 47888999999999999999998 88999999999999999999987 6777763 556777889999987
Q ss_pred CCCCC
Q 026180 160 CGQPL 164 (242)
Q Consensus 160 c~~~~ 164 (242)
.-.|-
T Consensus 376 VMPPK 380 (1255)
T KOG0444|consen 376 VMPPK 380 (1255)
T ss_pred cCCCC
Confidence 75544
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-13 Score=115.65 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=127.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|=++-.+++||... .+.-+.+.|..|.|+.++.+.|.. ++.|+.||||+|+|+.+.|++|.++.++..|-
T Consensus 51 VdCr~~GL~eVP~~L-----P~~tveirLdqN~I~~iP~~aF~~----l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv 121 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-----PPETVEIRLDQNQISSIPPGAFKT----LHRLRRLDLSKNNISFIAPDAFKGLASLLSLV 121 (498)
T ss_pred EEccCCCcccCcccC-----CCcceEEEeccCCcccCChhhccc----hhhhceecccccchhhcChHhhhhhHhhhHHH
Confidence 345666788888743 226777899999999998887766 88999999999999999999999999988876
Q ss_pred ccC-CCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC--CCCCcCCccccCCCC
Q 026180 82 LST-NSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK--QFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~-n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~ 158 (242)
+-+ |+|+....+.|.++.+|+.|.+.-|++.-...+.|..+++|..|.+-.|.+. .++... .......+..+.||+
T Consensus 122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 555 9999777788999999999999999999888889999999999999999988 455432 234456677889999
Q ss_pred CCCCCCC
Q 026180 159 LCGQPLS 165 (242)
Q Consensus 159 ~c~~~~~ 165 (242)
.|+|.+.
T Consensus 201 icdCnL~ 207 (498)
T KOG4237|consen 201 ICDCNLP 207 (498)
T ss_pred ccccccc
Confidence 9999776
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.24 E-value=2e-13 Score=115.09 Aligned_cols=148 Identities=27% Similarity=0.310 Sum_probs=90.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCC-CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPA-LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+|++.|+|.++|...-. +.. ++.+.++.|.+.+.+. ..+.++.|+.|+|++|-+. .+|..++.+-.|+.|
T Consensus 393 VnfskNqL~elPk~L~~---lkelvT~l~lsnn~isfv~~-----~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 393 VNFSKNQLCELPKRLVE---LKELVTDLVLSNNKISFVPL-----ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL 463 (565)
T ss_pred EecccchHhhhhhhhHH---HHHHHHHHHhhcCccccchH-----HHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence 45666666666654321 222 2234555555554432 2234667777777777777 677777777777777
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~ 159 (242)
|++.|++. .+|.....+..++.+-.++|++....|+.+.++.+|..||+.+|.+....|.-+...++..+.++|||+-
T Consensus 464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 77777766 6666555555555555555666655555566777777777777777744444445666666777777653
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=1.6e-11 Score=113.11 Aligned_cols=112 Identities=34% Similarity=0.462 Sum_probs=95.5
Q ss_pred CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180 25 LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104 (242)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 104 (242)
++.|+|++|.+.. ..+.....+++|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 6677888777752 222233457899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCcccccCC-CcccEEecCCCccccCCC
Q 026180 105 DLSNNKLSGQIPQQLGEL-TTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 105 ~l~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 140 (242)
+|++|.++|.+|..+... .++..+++.+|...+..|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999988764 467789999998776554
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=6.6e-12 Score=96.94 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=52.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-cCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L 80 (242)
++|++|+|+.|.... . .+.+|+.|++++|.|..++. . ..++.|++|++++|.|+. +++.+ ..+++|+.|
T Consensus 24 L~L~~n~I~~Ie~L~-~--~l~~L~~L~Ls~N~I~~l~~-l-----~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 24 LNLRGNQISTIENLG-A--TLDKLEVLDLSNNQITKLEG-L-----PGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------S---T--T-TT--EEE-TTS--S--TT----------TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccchh-h--hhcCCCEEECCCCCCccccC-c-----cChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 789999999998643 2 57899999999999997753 1 237899999999999995 44444 468999999
Q ss_pred eccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEec
Q 026180 81 NLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDV 130 (242)
Q Consensus 81 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l 130 (242)
++++|+|....- ..+..+++|+.|++.+|.++. .+. .+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 999999974322 456789999999999999983 343 3667899998863
No 16
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=3.7e-12 Score=104.13 Aligned_cols=124 Identities=24% Similarity=0.300 Sum_probs=81.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|||+|.|+.|....- -.|.++.|++++|.|..+++-. .+++|+.||||+|.++ .+...-..+.++.+|.
T Consensus 289 lDLS~N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~nLa------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVK---LAPKLRRLILSQNRIRTVQNLA------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred ccccccchhhhhhhhh---hccceeEEeccccceeeehhhh------hcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 5777777777776553 3557777777777777665422 2677777777777777 4444445667777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCcccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
|+.|.|. .+ ..+..+-+|..||+++|+|.... -..++++|.|+++.|.+|++.+
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777775 22 23555666777777777776321 1246677777777777777763
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.16 E-value=3.7e-11 Score=111.73 Aligned_cols=108 Identities=22% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCcccceeeeEEEeecCCch------------hhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCC
Q 026180 24 ALTYYGFSYYSLTLSNKGTE------------LEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91 (242)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~------------~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 91 (242)
+|++|++++|.|..++.... ..++..+.+|+.|++++|.|+ .+|.. .++|+.|++++|+++ .+
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sI 417 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SL 417 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CC
Confidence 67777777777664332100 000111234455555555555 23322 234555555555555 33
Q ss_pred CcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 92 PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 92 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
|..+ .+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|
T Consensus 418 P~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred Ccch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 4321 24555566666665 456666666666666666666665544
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.15 E-value=3.8e-12 Score=107.50 Aligned_cols=125 Identities=28% Similarity=0.366 Sum_probs=108.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.|.-+|... + .+++|+.|++++|-+...+...+ .+..|++|+++.|++. .+|...-.+..++.+-
T Consensus 417 l~lsnn~isfv~~~l-~--~l~kLt~L~L~NN~Ln~LP~e~~-----~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 417 LVLSNNKISFVPLEL-S--QLQKLTFLDLSNNLLNDLPEEMG-----SLVRLQTLNLSFNRFR-MLPECLYELQTLETLL 487 (565)
T ss_pred HHhhcCccccchHHH-H--hhhcceeeecccchhhhcchhhh-----hhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence 467888888888654 3 68899999999998886654332 3566999999999999 8999888888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++.+|++|.+.+|+|.
T Consensus 488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8889999777777999999999999999999 78889999999999999999998
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=3.8e-12 Score=116.81 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=75.8
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+..|+.|+|++|++.......+.++..|+.|+||+|+++ .+|+....+..|+.|...+|++. ..| .+..++.|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 556777777777777444445567777777777777777 77777777777777777777777 566 577788888888
Q ss_pred cCCCcccc-CCCCCCCCCCcCCccccCCCC
Q 026180 130 VSDNLLTG-PIPRGKQFNTFGKGSFDGNPG 158 (242)
Q Consensus 130 l~~N~l~~-~~p~~~~~~~~~~~~~~~n~~ 158 (242)
++.|.++. .+|......++..+++.||++
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88888763 445444446777788888875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=9.1e-11 Score=109.33 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=57.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.+|...+ .+|+.|++++|.+..++. ..+..|+.|+|++|.+. .+|..+. .+|+.|+
T Consensus 204 L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~-------~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 204 LILDNNELKSLPENLQ-----GNIKTLYANSNQLTSIPA-------TLPDTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred EEecCCCCCcCChhhc-----cCCCEEECCCCccccCCh-------hhhccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 5667777777765432 367777777776654332 12345667777777766 4555443 4677777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+++|+++ .+|..+. .+|+.|++++|+++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 7777776 4555443 36777777777766
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=1.6e-10 Score=107.56 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=18.6
Q ss_pred cccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180 124 TLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL 159 (242)
Q Consensus 124 ~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~ 159 (242)
+|+.|++++|+++ .+|... .+..+..+.+.+|+..
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 3444555555555 344432 2445556667777754
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=1.1e-10 Score=108.74 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=33.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.+|...+ .+|+.|++++|.+..++.. .+.+|+.|++++|+++ .+|..+. ++|+.|+
T Consensus 225 L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~-------l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 225 LYANSNQLTSIPATLP-----DTIQEMELSINRITELPER-------LPSALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred EECCCCccccCChhhh-----ccccEEECcCCccCcCChh-------HhCCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 4566666666665321 2455555555555432211 1234455555555544 2333321 2444444
Q ss_pred ccCCCCC
Q 026180 82 LSTNSLQ 88 (242)
Q Consensus 82 L~~n~l~ 88 (242)
+++|+++
T Consensus 290 Ls~N~Lt 296 (754)
T PRK15370 290 VYDNSIR 296 (754)
T ss_pred CCCCccc
Confidence 4444444
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.2e-10 Score=74.33 Aligned_cols=59 Identities=42% Similarity=0.520 Sum_probs=32.1
Q ss_pred CccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 026180 52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNK 110 (242)
Q Consensus 52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 110 (242)
+|+.|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444455555555555555555554444455555555555555554
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.1e-10 Score=73.25 Aligned_cols=61 Identities=41% Similarity=0.578 Sum_probs=56.6
Q ss_pred CCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180 75 KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135 (242)
Q Consensus 75 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 135 (242)
++|++|++++|+++...+..|..+++|++|++++|.++...|+.|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999977778899999999999999999988888999999999999999975
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=1.3e-11 Score=113.32 Aligned_cols=149 Identities=24% Similarity=0.300 Sum_probs=112.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH---------------------HhhcCccEEEccC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE---------------------KLSNLITAIILSN 60 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---------------------~~~~~L~~L~Ls~ 60 (242)
+++.+|.++.+|+.. .++.+|+.|++..|.|....+..+.... ..+..|+.|++.+
T Consensus 292 l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHhhhhhhhhCCCcc---cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 345566666666543 1366777777777766655543222111 1245578889999
Q ss_pred CCCccCcchhccCCCCCCEEeccCCCCCCCCCc-ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP-TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139 (242)
Q Consensus 61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 139 (242)
|.++...-..+.++..|+.|+|++|+++ .+|+ .+.++..|+.|+||+|+++ .+|+.+..++.|++|...+|++. ..
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred Ccccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 9999888788899999999999999999 5554 5788999999999999999 88999999999999999999998 66
Q ss_pred CCCCCCCCcCCccccCC
Q 026180 140 PRGKQFNTFGKGSFDGN 156 (242)
Q Consensus 140 p~~~~~~~~~~~~~~~n 156 (242)
|+..++..+..++++.|
T Consensus 446 Pe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLSCN 462 (1081)
T ss_pred hhhhhcCcceEEecccc
Confidence 77666666666666555
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=3.7e-10 Score=95.57 Aligned_cols=86 Identities=30% Similarity=0.500 Sum_probs=44.8
Q ss_pred cCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCC----Cccc
Q 026180 51 NLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQ----IPQQ 118 (242)
Q Consensus 51 ~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~ 118 (242)
++|+.|++++|.+++. .+..+..+..|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4556666666666532 223344455566666666665532 222233445666666666665532 2223
Q ss_pred ccCCCcccEEecCCCccc
Q 026180 119 LGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 119 ~~~l~~L~~L~l~~N~l~ 136 (242)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 445556666666666655
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.3e-08 Score=100.12 Aligned_cols=128 Identities=22% Similarity=0.213 Sum_probs=79.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.++.+|... .+.+|+.|++.+|.+.....+.. .+++|+.|+|+++.....+|. ++.+++|+.|+
T Consensus 594 L~~~~~~l~~lP~~f----~~~~L~~L~L~~s~l~~L~~~~~-----~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 594 LRWDKYPLRCMPSNF----RPENLVKLQMQGSKLEKLWDGVH-----SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred EEecCCCCCCCCCcC----CccCCcEEECcCccccccccccc-----cCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 455666677777643 45677777777777766544331 266777777776654335553 56677777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
+++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+..|
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 77765555677777777777777777754444555544 45666666666654443333
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=2.2e-10 Score=93.91 Aligned_cols=128 Identities=25% Similarity=0.285 Sum_probs=100.4
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
.|..|+.||+++|.|+.++.. .+..+.++.|++|+|+|. .+.. +..+++|+.|||++|.++ .+-.+-..+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccchhhhhhh-----hhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 677899999999999986643 356889999999999998 4433 778999999999999998 77777778889
Q ss_pred CCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc--CCCCCCCCCCcCCccccCCCC
Q 026180 101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG--PIPRGKQFNTFGKGSFDGNPG 158 (242)
Q Consensus 101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~n~~ 158 (242)
++.|.|+.|.+.. + ..+..+-+|..||+.+|++.. .+...+.+..+..+.+.+||.
T Consensus 354 IKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred EeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999999999873 2 356778899999999999873 122233445556667777874
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.3e-10 Score=102.14 Aligned_cols=122 Identities=30% Similarity=0.410 Sum_probs=64.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||+.|+++.+|..+|. --|+.|-+++|++...+.... ....|..||.+.|.+. .+|..++.+.+|..|.
T Consensus 126 l~ls~NqlS~lp~~lC~----lpLkvli~sNNkl~~lp~~ig-----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCD----LPLKVLIVSNNKLTSLPEEIG-----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhccchhhcCChhhhc----CcceeEEEecCccccCCcccc-----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 34444444444444321 134444444444444333322 1333444444444444 3444444455555555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
+..|++. .+|..+..| .|..||++.|+++ .+|-.|..+..|++|.|.+|+++
T Consensus 196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 5555555 444444432 3566777777777 66777777777778878777777
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=4.3e-10 Score=98.84 Aligned_cols=144 Identities=26% Similarity=0.382 Sum_probs=118.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+.|..|.|..||.... .+..|++|+++.|.+...+..+. .-.|+.|.+++|+++ .+|..++.+..|..||
T Consensus 103 liLy~n~~r~ip~~i~---~L~~lt~l~ls~NqlS~lp~~lC------~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 103 LILYHNCIRTIPEAIC---NLEALTFLDLSSNQLSHLPDGLC------DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHhccceecchhhh---hhhHHHHhhhccchhhcCChhhh------cCcceeEEEecCccc-cCCcccccchhHHHhh
Confidence 3578899999998653 67789999999999987665543 335789999999999 8899899999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL 159 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~ 159 (242)
.+.|++. .+|..++.+.+|+.|++..|++. .+|..+..++ |..||++.|+++ .+|... ....++.+.+..||..
T Consensus 173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 9999999 88888999999999999999998 6677788655 899999999999 666543 4556667777888753
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=3e-09 Score=93.00 Aligned_cols=144 Identities=28% Similarity=0.429 Sum_probs=73.3
Q ss_pred cccCCCCCcccCCCCCCCCCC-CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRY-PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+++.+|.|++|+.... .. ++|+.|+++.|.+.... ...+.++.|+.|++++|.++ .+|...+.++.|+.|
T Consensus 121 L~l~~n~i~~i~~~~~---~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 121 LDLDNNNITDIPPLIG---LLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred EecCCcccccCccccc---cchhhcccccccccchhhhh-----hhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 4556666666665441 12 25666666666665432 11223555555555555555 344433344555555
Q ss_pred eccCCCCCCCCCcc-----------------------cCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 81 NLSTNSLQGHIPPT-----------------------LGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 81 ~L~~n~l~~~~p~~-----------------------~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
++++|+++ .+|.. +..+.++..+.+.+|++. ..+..++.+++++.|++++|+++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence 55555555 33333 333344444444444444 22455566666777777777766
Q ss_pred CCCCCCCCCCcCCccccCCC
Q 026180 138 PIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 138 ~~p~~~~~~~~~~~~~~~n~ 157 (242)
.++.......+..+.+.+|.
T Consensus 269 ~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 269 SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccccCccCEEeccCcc
Confidence 33333344555556666653
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.70 E-value=6.1e-08 Score=95.45 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=79.9
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+.+|+.|+|++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 457778888888877 5677777888888888887765446664 77788888888888776667888888889999999
Q ss_pred cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+++|.....+|....+..+..+.+.|+.
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 9887665677776555666666666653
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=7.7e-09 Score=90.42 Aligned_cols=122 Identities=33% Similarity=0.473 Sum_probs=96.2
Q ss_pred cccCCCCC-cccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhc-CccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNL-TYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSN-LITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i-~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
++++.|++ ..+.... .++.++.|++..|.+..+..... .++ +|+.|++++|.+. .+|..+..++.|+.
T Consensus 98 l~~~~~~~~~~~~~~~----~~~~l~~L~l~~n~i~~i~~~~~-----~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~ 167 (394)
T COG4886 98 LDLNLNRLRSNISELL----ELTNLTSLDLDNNNITDIPPLIG-----LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKN 167 (394)
T ss_pred eeccccccccCchhhh----cccceeEEecCCcccccCccccc-----cchhhcccccccccchh-hhhhhhhccccccc
Confidence 45666666 3333322 56789999999999987765433 243 8999999999999 67777889999999
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 135 (242)
|++++|+++ .+|...+.++.|+.|++++|+++ .+|........|+.+.+++|.+
T Consensus 168 L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 168 LDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred cccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence 999999999 77776668899999999999999 6777666666789999999953
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=2.5e-09 Score=90.45 Aligned_cols=114 Identities=23% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCC----Ccc
Q 026180 23 PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHI----PPT 94 (242)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~ 94 (242)
++|+.|++++|.+...........+..+..|+.|++++|.+++. ++..+..+++|+.|++++|.+++.. ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 67788888877766322112222333456899999999999843 3444556679999999999987443 334
Q ss_pred cCCCCCCCEEeCCCCCCCCCCccccc-----CCCcccEEecCCCccc
Q 026180 95 LGNLIVLESLDLSNNKLSGQIPQQLG-----ELTTLEVFDVSDNLLT 136 (242)
Q Consensus 95 ~~~l~~L~~L~l~~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~ 136 (242)
+..+++|+.|++++|.++......+. ..+.|+.|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 66778999999999998853222222 2478999999999886
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.2e-09 Score=89.48 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=76.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCc--------------
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEI-------------- 67 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-------------- 67 (242)
+|||+|-+..+..-.--...+|+|+.|+++.|.+.......... .++.|+.|.|++|+++...
T Consensus 151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L 227 (505)
T KOG3207|consen 151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL 227 (505)
T ss_pred ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence 67888888775544322238899999999999887654433222 3556666666666665321
Q ss_pred -----------chhccCCCCCCEEeccCCCCCCCCC--cccCCCCCCCEEeCCCCCCCCC-Cccc-----ccCCCcccEE
Q 026180 68 -----------PTSIANLKGLRTLNLSTNSLQGHIP--PTLGNLIVLESLDLSNNKLSGQ-IPQQ-----LGELTTLEVF 128 (242)
Q Consensus 68 -----------p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~~L~~L 128 (242)
......+..|+.|||++|++- ..+ ...+.++.|..|+++.+.++.. .|+. ...+++|++|
T Consensus 228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 228 YLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred hhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 111223445556666666654 222 2345566666666666666533 2332 2345777777
Q ss_pred ecCCCccc
Q 026180 129 DVSDNLLT 136 (242)
Q Consensus 129 ~l~~N~l~ 136 (242)
++..|++.
T Consensus 307 ~i~~N~I~ 314 (505)
T KOG3207|consen 307 NISENNIR 314 (505)
T ss_pred ecccCccc
Confidence 77777775
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.50 E-value=1.2e-09 Score=79.76 Aligned_cols=109 Identities=25% Similarity=0.361 Sum_probs=83.8
Q ss_pred cCccEEEccCCCCccCcchhcc-CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 51 NLITAIILSNNSFVGEIPTSIA-NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 51 ~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
..|+..+|++|.+. ..|+.|. .++.++.+++++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 45777899999999 5555554 5568999999999999 88888999999999999999998 7788888899999999
Q ss_pred cCCCccccCCCCCCCCCCcCCc-cccCCCCCCCCC
Q 026180 130 VSDNLLTGPIPRGKQFNTFGKG-SFDGNPGLCGQP 163 (242)
Q Consensus 130 l~~N~l~~~~p~~~~~~~~~~~-~~~~n~~~c~~~ 163 (242)
..+|.+. .+|......+...+ .+..+|+--+|+
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 9999887 66655433333322 344455544444
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=5e-09 Score=94.72 Aligned_cols=131 Identities=28% Similarity=0.336 Sum_probs=93.3
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
.|..|...+.++|.+...+. ...+++.++.|+|++|+++... .+..++.|++|||++|.+. .+|..-..-..
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence 56677777888888776443 2345788899999999988443 6788899999999999998 55543222234
Q ss_pred CCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC--CCCCCCCcCCccccCCCCCCC
Q 026180 101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP--RGKQFNTFGKGSFDGNPGLCG 161 (242)
Q Consensus 101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~n~~~c~ 161 (242)
|+.|++.+|.++.. ..+.++.+|+.||++.|-+.+--. .-+.+..+..+.+.|||..|.
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 88999999988843 357888899999999998874211 112234455667888888774
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.6e-08 Score=72.91 Aligned_cols=134 Identities=23% Similarity=0.278 Sum_probs=78.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||+.-+|-.|++....-.+.-.|+..++++|.+...+.. +...++.+++|+|++|.|+ .+|..+..++.|+.|+
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 3555555555554433222334555566666666643322 2233556677777777777 6777777777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
++.|.+. ..|.-+..+.++..|+..+|.+. .+|-.+---...-..+++++++.+..+..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 7777777 66666666777777777777776 34433221122223344666666555543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-07 Score=80.41 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=79.6
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCc-chhccCCCCCCEEeccCCCCCCCC-Ccc----
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEI-PTSIANLKGLRTLNLSTNSLQGHI-PPT---- 94 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~~L~L~~n~l~~~~-p~~---- 94 (242)
.||+|+.|++..|....+. ....+.+..|+.|||++|++-... -...+.++.|..|+++.+.+.... |+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~----~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIK----ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred hCCcHHHhhhhccccccee----cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 6777888888777432222 222345778999999999987332 134578899999999999987532 332
Q ss_pred -cCCCCCCCEEeCCCCCCCCCCc--ccccCCCcccEEecCCCcccc
Q 026180 95 -LGNLIVLESLDLSNNKLSGQIP--QQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 95 -~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~ 137 (242)
.-.+++|++|++..|++. ..+ +.+..+++|+.|....|.++.
T Consensus 296 kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 356799999999999996 323 235556788999988999874
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=2.8e-07 Score=87.67 Aligned_cols=122 Identities=30% Similarity=0.359 Sum_probs=97.1
Q ss_pred cCCCCCcccCCCCCCCCCCCCCcccceeeeE--EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 4 VNANNLTYLQDPLLGPVRYPALTYYGFSYYS--LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 4 Ls~N~i~~l~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+-+|.+..++... ..+.|+.|-+-.|. +.. ....++..++.|+.|||++|.--+.+|..++.|-+|++|+
T Consensus 530 ~~~~~~~~~~~~~----~~~~L~tLll~~n~~~l~~----is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 530 LMNNKIEHIAGSS----ENPKLRTLLLQRNSDWLLE----ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred EeccchhhccCCC----CCCccceEEEeecchhhhh----cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4567777777765 45578888877775 332 2344566689999999998877778999999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL 134 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 134 (242)
+++..+. .+|..++.+..|.+||+..+.-...+|.....+++|++|.+-.-.
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999 899999999999999999887766667777779999999886543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=2.2e-07 Score=81.90 Aligned_cols=98 Identities=28% Similarity=0.364 Sum_probs=42.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++..|+|..|... .. .+++|++|+++.|.|..+..... +..|+.|++++|.|+. +.. +..+..|+.++
T Consensus 100 l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~l~~------l~~L~~L~l~~N~i~~-~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 100 LDLYDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEGLST------LTLLKELNLSGNLISD-ISG-LESLKSLKLLD 168 (414)
T ss_pred eeccccchhhcccc-hh--hhhcchheeccccccccccchhh------ccchhhheeccCcchh-ccC-Cccchhhhccc
Confidence 34455555555541 01 34455555555555554332211 3334555555555542 111 22345555555
Q ss_pred ccCCCCCCCCC-cccCCCCCCCEEeCCCCCC
Q 026180 82 LSTNSLQGHIP-PTLGNLIVLESLDLSNNKL 111 (242)
Q Consensus 82 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l 111 (242)
+++|++....+ . ...+.+++.+++.+|.+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 55555542222 1 23444444444554444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=5.4e-07 Score=79.44 Aligned_cols=121 Identities=24% Similarity=0.245 Sum_probs=92.8
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180 3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82 (242)
Q Consensus 3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 82 (242)
++..|.|.++.+.. . .+.+|+.|++.+|.|.-+... ...+.+|+.|++++|.|+...+ +..++.|+.|++
T Consensus 78 ~l~~n~i~~~~~~l-~--~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 78 NLRQNLIAKILNHL-S--KLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred ccchhhhhhhhccc-c--cccceeeeeccccchhhcccc-----hhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 46778888744422 2 778999999999999977653 2348899999999999996544 456777999999
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc-ccCCCcccEEecCCCccc
Q 026180 83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ-LGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 136 (242)
++|.|+ .+.. +..+..|+.+++++|++...-+ . ...+.+++.+.+++|.+.
T Consensus 148 ~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLIS-DISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcch-hccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 999998 4433 5668999999999999985543 2 467788888888888876
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=4.4e-06 Score=65.12 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=37.8
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEE
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVF 128 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L 128 (242)
.++...+||++|.+. .+ +.|..++.|.+|.|+.|+|+.+.|.--.-+++|+.|.|.+|+|...- -+.+..|++|+.|
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 334444555555444 11 22344555555555555555333332233344555555555544210 0123444555555
Q ss_pred ecCCCccc
Q 026180 129 DVSDNLLT 136 (242)
Q Consensus 129 ~l~~N~l~ 136 (242)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 55555443
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.4e-06 Score=49.82 Aligned_cols=36 Identities=39% Similarity=0.623 Sum_probs=18.3
Q ss_pred CccEEEccCCCCccCcchhccCCCCCCEEeccCCCCC
Q 026180 52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQ 88 (242)
Q Consensus 52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 88 (242)
+|+.|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555554
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3e-06 Score=50.05 Aligned_cols=36 Identities=50% Similarity=0.774 Sum_probs=20.4
Q ss_pred CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+|++|++++|+|+ .+|+.+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 44445566666666666666655
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.97 E-value=4.6e-06 Score=79.53 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=92.9
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC--CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS--FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL 98 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 98 (242)
.+...+...+-.|.+..+..... .+.|++|-+..|. +....+..|..++.|..|||++|.=-+.+|..++.+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~------~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSE------NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred chhheeEEEEeccchhhccCCCC------CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 44566777777777766554332 4468999999996 554556668889999999999988777999999999
Q ss_pred CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 99 IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 99 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
.+|++|++++..+. .+|..+.++..|.+|++..+.....+|..
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 99999999999999 88999999999999999988765555443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=1.2e-07 Score=85.97 Aligned_cols=122 Identities=28% Similarity=0.272 Sum_probs=77.7
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180 3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82 (242)
Q Consensus 3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 82 (242)
|.++|.+..+.... . -++.|+.|+|++|.+.... ....++.|+.|||++|.+. .+|..-..-..|+.|.+
T Consensus 170 ~fsyN~L~~mD~SL-q--ll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESL-Q--LLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hcchhhHHhHHHHH-H--HHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 45677777666543 2 4567888888888776433 2234677888888888887 44442222223788888
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccc
Q 026180 83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 136 (242)
++|.++ .+-+ +.++.+|+.||++.|-+.+... ..+..+..|+.|.|.+|++-
T Consensus 240 rnN~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888876 3322 5677778888888887764311 12344567778888888775
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=2.3e-05 Score=61.19 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=89.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||.+.+|..+.... .-..+...+||++|.|.....- + .++.|.+|.|++|.|+.+.|.--..+++|+.|.
T Consensus 24 ~~LR~lkip~ienlg---~~~d~~d~iDLtdNdl~~l~~l--p----~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 24 LDLRGLKIPVIENLG---ATLDQFDAIDLTDNDLRKLDNL--P----HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccchhhcc---ccccccceecccccchhhcccC--C----CccccceEEecCCcceeeccchhhhccccceEE
Confidence 577888888877722 1455778889999888765432 2 277899999999999977777666778899999
Q ss_pred ccCCCCCCCCC--cccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEecCC
Q 026180 82 LSTNSLQGHIP--PTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDVSD 132 (242)
Q Consensus 82 L~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l~~ 132 (242)
|.+|.|. .+- +.+..+++|++|.+-+|..+.. +. .+..+|+|+.||.+.
T Consensus 95 LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 95 LTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence 9999986 333 2356788999999999988732 22 366788999998765
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00014 Score=63.37 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=61.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCC-CCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~ 79 (242)
++++++.|+.+|. -..+|+.|.+++ +.+...+. ..+.+|+.|++++| .+. .+|. +|+.
T Consensus 57 L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~-------~LP~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 57 LYIKDCDIESLPV------LPNELTEITIENCNNLTTLPG-------SIPEGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred EEeCCCCCcccCC------CCCCCcEEEccCCCCcccCCc-------hhhhhhhheEccCccccc-cccc------ccce
Confidence 6788888888883 233788888865 44443322 23567888888887 554 3443 3555
Q ss_pred EeccCCCCC--CCCCcccCCC------------------CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCC
Q 026180 80 LNLSTNSLQ--GHIPPTLGNL------------------IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133 (242)
Q Consensus 80 L~L~~n~l~--~~~p~~~~~l------------------~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 133 (242)
|++..+... +.+|..+..| ++|+.|+++++... ..|..+. .+|+.|+++.+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 556555431 1333322211 35666666666654 3343332 36666666554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=6.6e-05 Score=70.03 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=78.1
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC-CCCcccCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTLGNLI 99 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~ 99 (242)
.+|+|+.|.+.+-.+...+ +......+++|..||+|+.+++.. ..++.|++|+.|-+.+=.+.. ..-..+..|.
T Consensus 146 ~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred hCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 7888888888875554322 445556688899999999988844 556788888888776655542 1223467789
Q ss_pred CCCEEeCCCCCCCCCCcc-------cccCCCcccEEecCCCcccc
Q 026180 100 VLESLDLSNNKLSGQIPQ-------QLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~-------~~~~l~~L~~L~l~~N~l~~ 137 (242)
+|+.||+|....... +. .-..+|+|+.||.+++.+..
T Consensus 221 ~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999999998776532 21 22357899999999877753
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.38 E-value=2.9e-05 Score=65.18 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCCCC----ccc
Q 026180 24 ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGHIP----PTL 95 (242)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~ 95 (242)
.|+++..+.|.+..-+.......+...+.|..+.++.|.|... +-..|..+++|+.|||.+|.++..-. ..+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 4555555555555443333333333344555555555555321 12233445555555555555542211 223
Q ss_pred CCCCCCCEEeCCCCCCCCCCcccc-----cCCCcccEEecCCCccc
Q 026180 96 GNLIVLESLDLSNNKLSGQIPQQL-----GELTTLEVFDVSDNLLT 136 (242)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~ 136 (242)
..++.|+.++++.+.+...-...| ...++|+.+.+.+|.++
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 444455555555555442211111 12345555555555554
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00037 Score=50.74 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=67.5
Q ss_pred cccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC
Q 026180 10 TYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG 89 (242)
Q Consensus 10 ~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~ 89 (242)
++|++.+|. ...+|+.+.+.. .+..++...+.. .+.|+.+.+.++ +.......|.....++.+.+.. .+..
T Consensus 1 ~~i~~~~F~--~~~~l~~i~~~~-~~~~I~~~~F~~----~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 1 TSIGNNAFY--NCSNLESITFPN-TIKKIGENAFSN----CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp -EE-TTTTT--T-TT--EEEETS-T--EE-TTTTTT-----TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred CEECHHHHh--CCCCCCEEEECC-CeeEeChhhccc----cccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 357888888 788898888874 566676666544 677899999875 6656667788888899999976 5543
Q ss_pred CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180 90 HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132 (242)
Q Consensus 90 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 132 (242)
.....|..+.+|+.+++..+ +.......|.++ .++.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55667788899999999776 554555567776 888887764
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00019 Score=58.11 Aligned_cols=101 Identities=25% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC--CCccCcchhccCCCCCCEEeccCCCCCCCCCcc---c
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN--SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPT---L 95 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---~ 95 (242)
.+..|+.|++.+..++...+-. .+++|+.|.+|.| .+++.++...-.+++|+++++++|+|.. +.+ +
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPL 112 (260)
T ss_pred cccchhhhhhhccceeecccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchh
Confidence 5556666665554444322211 1566777777777 5555454444455777777777777762 222 2
Q ss_pred CCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEe
Q 026180 96 GNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFD 129 (242)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~ 129 (242)
..+.+|..|++.++..+...- ..|.-+++|++|+
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 344555666776666654211 1244455555554
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00019 Score=59.49 Aligned_cols=98 Identities=30% Similarity=0.315 Sum_probs=70.0
Q ss_pred cCCchhhHHHhhcCccEEEccCCCCcc--CcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-
Q 026180 39 NKGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI- 115 (242)
Q Consensus 39 ~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~- 115 (242)
..+-+..+......++.+||.+|.|+. .+..-+.+++.|++|+|+.|.+...+-.....+.+|+.|-|.+..+...-
T Consensus 59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh
Confidence 344455555667788999999999983 23344558999999999999998555443346788999999888776432
Q ss_pred cccccCCCcccEEecCCCccc
Q 026180 116 PQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 116 p~~~~~l~~L~~L~l~~N~l~ 136 (242)
...+..+|.++.|+++.|.+.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhhhhcchhhhhhhhccchhh
Confidence 234567788888888888543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.15 E-value=0.00014 Score=61.17 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=78.0
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchh-------------ccCCCCCCEEeccCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTS-------------IANLKGLRTLNLSTNSL 87 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~-------------~~~l~~L~~L~L~~n~l 87 (242)
..+.|++|+||+|.+.-.....+..+.+....|+.|+|.+|.+...-... ...-+.|+.+..+.|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 44578888888888776555555555555677888888888876322111 23456788888888887
Q ss_pred CCCCC----cccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180 88 QGHIP----PTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 88 ~~~~p----~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
....- ..|...+.|+.+.++.|.|... +...+..+++|+.|||..|-|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 62211 2356667888888888877632 1234667888888888888886
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.00047 Score=50.17 Aligned_cols=109 Identities=13% Similarity=0.222 Sum_probs=62.8
Q ss_pred CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180 7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS 86 (242)
Q Consensus 7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~ 86 (242)
+.+..|+..+|. ...+|+.+.+..+ +..++...+.. ...++.+.+.. .+.......|...++++.+++..+
T Consensus 21 ~~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~----~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~- 91 (129)
T PF13306_consen 21 NTIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSN----CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN- 91 (129)
T ss_dssp ST--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-----TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-
T ss_pred CCeeEeChhhcc--ccccccccccccc-ccccceeeeec----ccccccccccc-cccccccccccccccccccccCcc-
Confidence 468899999999 8888999999875 66666666544 66789999976 555456677888999999999876
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc
Q 026180 87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE 126 (242)
Q Consensus 87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~ 126 (242)
+.......|.+. .|+.+.+.. .++......|.++++|+
T Consensus 92 ~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 92 ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 654556667776 999999886 55546666788877764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00012 Score=60.63 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=48.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc-hhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP-TSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L 80 (242)
+||.+|+|++..+...---.+|.|+.|+++.|.+...-...+. ...+|+.|.|.+..+....- ..+..++.++.|
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 5778888877554332222678888888888877654333221 14567777777766654322 233456666666
Q ss_pred eccCC
Q 026180 81 NLSTN 85 (242)
Q Consensus 81 ~L~~n 85 (242)
.++.|
T Consensus 152 HmS~N 156 (418)
T KOG2982|consen 152 HMSDN 156 (418)
T ss_pred hhccc
Confidence 66666
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.78 E-value=0.00076 Score=63.10 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=80.3
Q ss_pred CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC-cchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE-IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
..+|++|++++...- ..+-.......+++|+.|.+++-.+... .-....++++|..||+|+.+++. + ..++.+.+
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhcccc
Confidence 347889999874433 3444455567799999999988776532 23455688999999999999983 3 55788899
Q ss_pred CCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccc
Q 026180 101 LESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 101 L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
|+.|.+.+=.+.. ..-..+.++++|+.||+|.....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9988887766552 11124668999999999986654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.68 E-value=0.003 Score=55.20 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=62.7
Q ss_pred CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccC-CCCccCcchhccCCCCCCEEeccCC-CCCCCCCcccCCCC
Q 026180 22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN-NSFVGEIPTSIANLKGLRTLNLSTN-SLQGHIPPTLGNLI 99 (242)
Q Consensus 22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~ 99 (242)
+.+++.|+++.+.|...+ ..+.+|+.|.+++ +.++ .+|+.+ ..+|++|++++| .+. .+|..
T Consensus 51 ~~~l~~L~Is~c~L~sLP--------~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s----- 113 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--------VLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES----- 113 (426)
T ss_pred hcCCCEEEeCCCCCcccC--------CCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc-----
Confidence 578889999888666543 2367799999987 4444 667654 358999999988 555 55543
Q ss_pred CCCEEeCCCCCCC--CCCcccccCC------------------CcccEEecCCCccc
Q 026180 100 VLESLDLSNNKLS--GQIPQQLGEL------------------TTLEVFDVSDNLLT 136 (242)
Q Consensus 100 ~L~~L~l~~N~l~--~~~p~~~~~l------------------~~L~~L~l~~N~l~ 136 (242)
|+.|++..+... +.+|..+..+ ++|+.|++++|...
T Consensus 114 -Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 114 -VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred -cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 555566555431 2344433222 36788888877654
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0017 Score=52.64 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=60.6
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCC--CCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc---ccCCCc
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTN--SLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQ---LGELTT 124 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---~~~l~~ 124 (242)
+..|+.|.+.+..++. . ..|..|++|++|.++.| .+++.++.-...+++|+++++++|++.- +.. +..+.+
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 4456666666766662 2 23567889999999999 6666666555566999999999999872 333 445667
Q ss_pred ccEEecCCCcccc
Q 026180 125 LEVFDVSDNLLTG 137 (242)
Q Consensus 125 L~~L~l~~N~l~~ 137 (242)
|..|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8889998887764
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.81 E-value=0.004 Score=30.68 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=9.1
Q ss_pred ccEEEccCCCCccCcchhc
Q 026180 53 ITAIILSNNSFVGEIPTSI 71 (242)
Q Consensus 53 L~~L~Ls~n~i~~~~p~~~ 71 (242)
|+.|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0036 Score=30.83 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=8.7
Q ss_pred CCEEeccCCCCCCCCCccc
Q 026180 77 LRTLNLSTNSLQGHIPPTL 95 (242)
Q Consensus 77 L~~L~L~~n~l~~~~p~~~ 95 (242)
|++||+++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.00075 Score=55.49 Aligned_cols=100 Identities=23% Similarity=0.197 Sum_probs=70.1
Q ss_pred CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCC-cccCCCCC
Q 026180 22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIP-PTLGNLIV 100 (242)
Q Consensus 22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~ 100 (242)
+.+.+.|++-+..|+.+ .....++.|+.|.||-|.|+..-| +..++.|++|+|..|.|....- ..+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 34455555555544432 233458889999999999985544 5678899999999999873321 23688999
Q ss_pred CCEEeCCCCCCCCCCcc-----cccCCCcccEEe
Q 026180 101 LESLDLSNNKLSGQIPQ-----QLGELTTLEVFD 129 (242)
Q Consensus 101 L~~L~l~~N~l~~~~p~-----~~~~l~~L~~L~ 129 (242)
|+.|+|..|...|.-+. .+.-+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999998876543 245577887776
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.31 E-value=0.0002 Score=57.38 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=55.8
Q ss_pred CCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccC
Q 026180 5 NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLST 84 (242)
Q Consensus 5 s~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~ 84 (242)
|--.+++||..... .+...+.||++.|.+.-..... ..+..+..|+++.|++. ..|..+..+..+..+++..
T Consensus 26 s~s~~s~~~v~ei~--~~kr~tvld~~s~r~vn~~~n~-----s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 26 SLSELSEIPVREIA--SFKRVTVLDLSSNRLVNLGKNF-----SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHK 97 (326)
T ss_pred CHHHhcccchhhhh--ccceeeeehhhhhHHHhhccch-----HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence 33344455544444 4555666666655544332221 23445556666666666 5666666666666666666
Q ss_pred CCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 85 NSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 85 n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
|.++ ..|.+++..+.++++++-.|.++
T Consensus 98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchh-hCCccccccCCcchhhhccCcch
Confidence 6666 56666666666666666666554
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.29 E-value=0.00028 Score=56.54 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=75.9
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
....+.||++.|++- .+...|+.++.+..||++.|++. ..|..++.+..+..+++-.|..+ ..|..++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 456788999999988 67778888999999999999999 89999999999999999999998 7899999999999999
Q ss_pred cCCCccc
Q 026180 130 VSDNLLT 136 (242)
Q Consensus 130 l~~N~l~ 136 (242)
+.+|.++
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999876
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.22 E-value=0.028 Score=46.40 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred cCccEEEccCCCCccCcchh----ccCCCCCCEEeccCCCCC
Q 026180 51 NLITAIILSNNSFVGEIPTS----IANLKGLRTLNLSTNSLQ 88 (242)
Q Consensus 51 ~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~L~~n~l~ 88 (242)
+.|+.++||.|.+....|.. ++.-+.|.+|.+++|.+.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 45556666666655444433 234455566666655543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.0052 Score=50.70 Aligned_cols=90 Identities=22% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc-hhccCCCCCCEEeccC
Q 026180 6 ANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP-TSIANLKGLRTLNLST 84 (242)
Q Consensus 6 ~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~ 84 (242)
+..|.+|.- +. +++.|++|.|+.|.|+... ++.-++.|++|+|..|.|..... ..+.++++|+.|-|..
T Consensus 28 g~~L~DIsi--c~--kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 28 GCGLDDISI--CE--KMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred CCCccHHHH--HH--hcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344555442 33 8999999999999998543 23347889999999999984322 2356899999999999
Q ss_pred CCCCCCCCcc-----cCCCCCCCEEe
Q 026180 85 NSLQGHIPPT-----LGNLIVLESLD 105 (242)
Q Consensus 85 n~l~~~~p~~-----~~~l~~L~~L~ 105 (242)
|-..+..+.. +..||+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 9988777653 45678887765
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.31 E-value=0.061 Score=24.59 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=4.4
Q ss_pred ccEEEccCCCCc
Q 026180 53 ITAIILSNNSFV 64 (242)
Q Consensus 53 L~~L~Ls~n~i~ 64 (242)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444555555444
No 69
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=92.93 E-value=0.11 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=12.0
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcch
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
..+++++.++++++++++++++.||
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEe
Confidence 4444455555555554444444344
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.16 E-value=0.14 Score=42.44 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=27.1
Q ss_pred ccCCCCCCEEeccCCCCCCCCCcc----cCCCCCCCEEeCCCCCCC
Q 026180 71 IANLKGLRTLNLSTNSLQGHIPPT----LGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 71 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 112 (242)
+-.++.|+..+||+|-+....|.. +..-..|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345677777777777776666643 344466777777777654
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.75 E-value=0.16 Score=25.80 Aligned_cols=13 Identities=54% Similarity=0.772 Sum_probs=6.1
Q ss_pred CCCEEeccCCCCC
Q 026180 76 GLRTLNLSTNSLQ 88 (242)
Q Consensus 76 ~L~~L~L~~n~l~ 88 (242)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.75 E-value=0.16 Score=25.80 Aligned_cols=13 Identities=54% Similarity=0.772 Sum_probs=6.1
Q ss_pred CCCEEeccCCCCC
Q 026180 76 GLRTLNLSTNSLQ 88 (242)
Q Consensus 76 ~L~~L~L~~n~l~ 88 (242)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.03 Score=46.77 Aligned_cols=85 Identities=24% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC-CCCCC-CcccCCCCCC
Q 026180 24 ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS-LQGHI-PPTLGNLIVL 101 (242)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~-p~~~~~l~~L 101 (242)
.||+|||+...|+... .....+....|+.|.|.++++...+-..+..-.+|+.|+|+... ++... .-.+.++..|
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4788888887776432 22222335566677777777665555555555556666665432 22100 0113444555
Q ss_pred CEEeCCCCCC
Q 026180 102 ESLDLSNNKL 111 (242)
Q Consensus 102 ~~L~l~~N~l 111 (242)
+.|+++++.+
T Consensus 263 ~~LNlsWc~l 272 (419)
T KOG2120|consen 263 DELNLSWCFL 272 (419)
T ss_pred hhcCchHhhc
Confidence 5555555543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.46 E-value=0.19 Score=25.46 Aligned_cols=16 Identities=56% Similarity=0.601 Sum_probs=10.4
Q ss_pred CCCCEEeCCCCCCCCC
Q 026180 99 IVLESLDLSNNKLSGQ 114 (242)
Q Consensus 99 ~~L~~L~l~~N~l~~~ 114 (242)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777777633
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.46 E-value=0.19 Score=25.46 Aligned_cols=16 Identities=56% Similarity=0.601 Sum_probs=10.4
Q ss_pred CCCCEEeCCCCCCCCC
Q 026180 99 IVLESLDLSNNKLSGQ 114 (242)
Q Consensus 99 ~~L~~L~l~~N~l~~~ 114 (242)
++|+.|+|++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777777633
No 76
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=89.24 E-value=0.35 Score=38.17 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=7.5
Q ss_pred eeeehhhhhhhHhhhhHH
Q 026180 192 TVLIGYASGTVIGVVLGH 209 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~ 209 (242)
.|++|+++|++.++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIF 55 (221)
T ss_pred eeeeeeecchhhhHHHHH
Confidence 344444444444333333
No 77
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=88.64 E-value=0.5 Score=35.32 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=12.5
Q ss_pred cceeeeehhhhhhhHhhhhHHhhhc
Q 026180 189 GWKTVLIGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~~~~~~~~ 213 (242)
.++++++|+++++++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEE
Confidence 3455566655555554444444333
No 78
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.14 E-value=0.21 Score=36.10 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=5.5
Q ss_pred ehhhhhhhHhhhh
Q 026180 195 IGYASGTVIGVVL 207 (242)
Q Consensus 195 ~~~~~~~v~~~~~ 207 (242)
+++++|+++++++
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444444433
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=0.19 Score=42.16 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---CcchhccCCCCCCEEeccCCC-CCCCCCcccC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG---EIPTSIANLKGLRTLNLSTNS-LQGHIPPTLG 96 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 96 (242)
.+..|..|+++.+.+.-.. ........-..|+.|+|++..-.- .+.--....+++..|||++|. ++...-..|.
T Consensus 258 scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred hhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 5677888888887554321 222222334567888888765321 111222457889999999875 3433334567
Q ss_pred CCCCCCEEeCCCCCCCCCCccc---ccCCCcccEEecCCC
Q 026180 97 NLIVLESLDLSNNKLSGQIPQQ---LGELTTLEVFDVSDN 133 (242)
Q Consensus 97 ~l~~L~~L~l~~N~l~~~~p~~---~~~l~~L~~L~l~~N 133 (242)
.++.|++|.++.+-. .+|.. +...|+|.+|++.+.
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 788888888877643 55654 456788999987653
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.06 E-value=0.26 Score=24.41 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=6.0
Q ss_pred CccEEEccCCCCc
Q 026180 52 LITAIILSNNSFV 64 (242)
Q Consensus 52 ~L~~L~Ls~n~i~ 64 (242)
+|+.|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4555555555554
No 81
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=83.43 E-value=0.6 Score=33.79 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=17.5
Q ss_pred cceeeeehhhhhhhHhhhhHHhhhcch
Q 026180 189 GWKTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
.+.+|++|+++|+++.++++.++++|+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777666555555433
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.04 E-value=1 Score=23.03 Aligned_cols=17 Identities=41% Similarity=0.813 Sum_probs=9.5
Q ss_pred CCCEEeCCCCCCCCCCcc
Q 026180 100 VLESLDLSNNKLSGQIPQ 117 (242)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~ 117 (242)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4556666666665 4443
No 83
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=81.65 E-value=2.3 Score=32.96 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=10.2
Q ss_pred eeeeehhhhhhhHhhhhHHhhh
Q 026180 191 KTVLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~ 212 (242)
..++++++++++++++++++++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhe
Confidence 4455555555444444333333
No 84
>PF15102 TMEM154: TMEM154 protein family
Probab=81.30 E-value=0.93 Score=33.68 Aligned_cols=18 Identities=6% Similarity=-0.219 Sum_probs=8.3
Q ss_pred hhhHHhhhcchhhHHHHH
Q 026180 205 VVLGHIFSTRKYEWLAKT 222 (242)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ 222 (242)
++++++++.+.+||+.|.
T Consensus 72 Ll~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHheeEEeecccCC
Confidence 333344444445566543
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.22 E-value=0.72 Score=49.19 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=33.8
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCC
Q 026180 3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKG 41 (242)
Q Consensus 3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 41 (242)
||++|+|+.|+...|. .+++|+.|+|++|.+.+....
T Consensus 1 DLSnN~LstLp~g~F~--~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICA--NLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhc--cCCCceEEEeeCCcccccccc
Confidence 7999999999999999 899999999999999986543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.61 E-value=1.8 Score=22.15 Aligned_cols=13 Identities=62% Similarity=0.797 Sum_probs=5.9
Q ss_pred CCCEEeCCCCCCC
Q 026180 100 VLESLDLSNNKLS 112 (242)
Q Consensus 100 ~L~~L~l~~N~l~ 112 (242)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3444444444443
No 87
>PF15069 FAM163: FAM163 family
Probab=79.16 E-value=3.3 Score=30.60 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=19.7
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcchhhHH
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRKYEWL 219 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 219 (242)
.+++.|.+++.|+++.++.++.+.|.++|
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCRLQYY 33 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCRLQYY 33 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhhHHH
Confidence 35667777777777777777776665555
No 88
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=76.39 E-value=2 Score=31.49 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=7.9
Q ss_pred hhhhhhHhhhhHHhhhcch
Q 026180 197 YASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 197 ~~~~~v~~~~~~~~~~~~~ 215 (242)
+.+++|++++++++++.++
T Consensus 4 l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=74.35 E-value=2.6 Score=23.60 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=4.9
Q ss_pred hhhhhhhHhhhh
Q 026180 196 GYASGTVIGVVL 207 (242)
Q Consensus 196 ~~~~~~v~~~~~ 207 (242)
++++++++++++
T Consensus 7 aIIv~V~vg~~i 18 (38)
T PF02439_consen 7 AIIVAVVVGMAI 18 (38)
T ss_pred hHHHHHHHHHHH
Confidence 344444444333
No 90
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=73.88 E-value=1 Score=37.64 Aligned_cols=31 Identities=3% Similarity=-0.175 Sum_probs=0.0
Q ss_pred eehhhhhhhHhhhhHHhhhcchhhHHHHHhh
Q 026180 194 LIGYASGTVIGVVLGHIFSTRKYEWLAKTFR 224 (242)
Q Consensus 194 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 224 (242)
+.+++++++++++.+++++++|+++.-|+..
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 3455555555566666666666655555553
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.05 E-value=3.2 Score=21.41 Aligned_cols=11 Identities=64% Similarity=0.890 Sum_probs=4.9
Q ss_pred CCEEeccCCCC
Q 026180 77 LRTLNLSTNSL 87 (242)
Q Consensus 77 L~~L~L~~n~l 87 (242)
|++|||++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 92
>PF15050 SCIMP: SCIMP protein
Probab=71.41 E-value=0.98 Score=32.16 Aligned_cols=7 Identities=14% Similarity=0.748 Sum_probs=2.6
Q ss_pred ceeeeeh
Q 026180 190 WKTVLIG 196 (242)
Q Consensus 190 ~~~~~~~ 196 (242)
|++.+++
T Consensus 9 WiiLAVa 15 (133)
T PF15050_consen 9 WIILAVA 15 (133)
T ss_pred HHHHHHH
Confidence 3333333
No 93
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=70.17 E-value=1.2 Score=28.03 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred eeehhhhhhhHhhhhHHh
Q 026180 193 VLIGYASGTVIGVVLGHI 210 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~ 210 (242)
++.|+++|++++++++++
T Consensus 14 vIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILF 31 (64)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.93 E-value=3.7 Score=44.24 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=25.7
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666667888888888888888775
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.40 E-value=0.76 Score=36.34 Aligned_cols=81 Identities=23% Similarity=0.244 Sum_probs=46.8
Q ss_pred CccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC-CCCccc-CCCCCCCEEeCCCC-CCCCCCcccccCCCcccEE
Q 026180 52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG-HIPPTL-GNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVF 128 (242)
Q Consensus 52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L 128 (242)
.++.+|-++..|..+--..+..++.++.|.+.++.--+ ..-..+ +..++|+.|++++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35667777777775555556666777766665553211 000011 13467888888866 4664333345667777777
Q ss_pred ecCC
Q 026180 129 DVSD 132 (242)
Q Consensus 129 ~l~~ 132 (242)
.+..
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 96
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=65.95 E-value=5.4 Score=31.68 Aligned_cols=25 Identities=0% Similarity=0.008 Sum_probs=15.7
Q ss_pred ccceeeeehhhhhhhHhhhhHHhhh
Q 026180 188 FGWKTVLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~~~~~~~ 212 (242)
..+++.+++.++++++++++++++.
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 3455666666666666666666665
No 97
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.77 E-value=0.21 Score=45.00 Aligned_cols=86 Identities=29% Similarity=0.363 Sum_probs=45.6
Q ss_pred cCccEEEccCCCCccC----cchhccCCCC-CCEEeccCCCCCCC----CCcccCCC-CCCCEEeCCCCCCCCCCcc---
Q 026180 51 NLITAIILSNNSFVGE----IPTSIANLKG-LRTLNLSTNSLQGH----IPPTLGNL-IVLESLDLSNNKLSGQIPQ--- 117 (242)
Q Consensus 51 ~~L~~L~Ls~n~i~~~----~p~~~~~l~~-L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~l~~N~l~~~~p~--- 117 (242)
.++++|.+++|.++.. ....+...+. +..+++..|.+.+. ....+..+ ..++.++++.|.++..-..
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 3455666666665521 1122233333 44566666666532 11223334 5667777777777644332
Q ss_pred -cccCCCcccEEecCCCccc
Q 026180 118 -QLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 118 -~~~~l~~L~~L~l~~N~l~ 136 (242)
.+..++.++.+.++.|.+.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 3345566777777777765
No 98
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=64.72 E-value=14 Score=30.82 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=3.5
Q ss_pred eehhhhhhh
Q 026180 194 LIGYASGTV 202 (242)
Q Consensus 194 ~~~~~~~~v 202 (242)
++|+++|++
T Consensus 216 v~g~~~G~~ 224 (278)
T PF06697_consen 216 VVGVVGGVV 224 (278)
T ss_pred EEEehHHHH
Confidence 344333333
No 99
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=64.00 E-value=3.7 Score=28.40 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=6.9
Q ss_pred cceeeeehhhhhh
Q 026180 189 GWKTVLIGYASGT 201 (242)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (242)
.+..+++++++++
T Consensus 67 aiagi~vg~~~~v 79 (96)
T PTZ00382 67 AIAGISVAVVAVV 79 (96)
T ss_pred cEEEEEeehhhHH
Confidence 3456666655433
No 100
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=63.36 E-value=3.6 Score=30.87 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=18.2
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcchh
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRKY 216 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~ 216 (242)
.-++||+++|+.+.++++++++.|..
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeE
Confidence 56789998888777776655555543
No 101
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=62.35 E-value=3.1 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.5
Q ss_pred ceeeeehhhhhhhHhhhhHHhhhcch
Q 026180 190 WKTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 190 ~~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
+..|++|++++++++++++.+++.||
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEec
Confidence 44555555555544444444444333
No 102
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=60.28 E-value=4.7 Score=26.49 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.2
Q ss_pred hhhhhH
Q 026180 198 ASGTVI 203 (242)
Q Consensus 198 ~~~~v~ 203 (242)
++|+++
T Consensus 7 ~~g~~~ 12 (75)
T PF14575_consen 7 IVGVLL 12 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 103
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=58.56 E-value=3.2 Score=31.39 Aligned_cols=25 Identities=4% Similarity=-0.073 Sum_probs=0.0
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcch
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
..|++|+++++.++..++++++|+.
T Consensus 132 VGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 132 VGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -------------------------
T ss_pred eeehhhHHHHHHHHhheeeEEeehh
Confidence 4455555555555555555555554
No 104
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=55.87 E-value=22 Score=25.28 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.4
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcch
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
...+||..+++++.++..+.+.+++
T Consensus 86 Lp~VIGGLcaL~LaamGA~~LLrR~ 110 (126)
T PF03229_consen 86 LPLVIGGLCALTLAAMGAGALLRRC 110 (126)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444343344444433
No 105
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=54.85 E-value=16 Score=21.85 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=12.8
Q ss_pred ehhhhhhhHhhhhHHhhhcchh
Q 026180 195 IGYASGTVIGVVLGHIFSTRKY 216 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~~ 216 (242)
.|.+++++++++.++++...|.
T Consensus 17 gGLi~A~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 17 GGLIFAGVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHHHHHHHHcCcc
Confidence 4556666666666666665443
No 106
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.80 E-value=14 Score=23.45 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=9.5
Q ss_pred hhhhhhHhhhhHHhhhcc
Q 026180 197 YASGTVIGVVLGHIFSTR 214 (242)
Q Consensus 197 ~~~~~v~~~~~~~~~~~~ 214 (242)
+++++++++++.+++.++
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 107
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=54.49 E-value=9.7 Score=25.15 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=6.8
Q ss_pred eehhhhhhhHhhhhHH
Q 026180 194 LIGYASGTVIGVVLGH 209 (242)
Q Consensus 194 ~~~~~~~~v~~~~~~~ 209 (242)
..|++++=+++.++++
T Consensus 36 LaGiV~~D~vlTLLIv 51 (79)
T PF07213_consen 36 LAGIVAADAVLTLLIV 51 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 108
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=53.07 E-value=8.8 Score=33.98 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=28.7
Q ss_pred CCCCCCEEeccCCC-CCCCCCcccCC-CCCCCEEeCCCCC-CCCC-CcccccCCCcccEEecCCCc
Q 026180 73 NLKGLRTLNLSTNS-LQGHIPPTLGN-LIVLESLDLSNNK-LSGQ-IPQQLGELTTLEVFDVSDNL 134 (242)
Q Consensus 73 ~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~l~~N~-l~~~-~p~~~~~l~~L~~L~l~~N~ 134 (242)
.+.+|+.|++++.. ++...-..+.. +++|+.|.+.++. ++.. +-.....++.|+.|+++.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34556666666655 33322222221 4566666655444 3321 11112345566666666543
No 109
>PHA03265 envelope glycoprotein D; Provisional
Probab=52.93 E-value=18 Score=31.00 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=11.7
Q ss_pred eeeeehh-hhhhhHhhhhHHhhhcch
Q 026180 191 KTVLIGY-ASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 191 ~~~~~~~-~~~~v~~~~~~~~~~~~~ 215 (242)
.++++|. ++|+|++.+++++++++|
T Consensus 350 ~g~~ig~~i~glv~vg~il~~~~rr~ 375 (402)
T PHA03265 350 VGISVGLGIAGLVLVGVILYVCLRRK 375 (402)
T ss_pred cceEEccchhhhhhhhHHHHHHhhhh
Confidence 4444443 444444444555555444
No 110
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.99 E-value=3.3 Score=37.67 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN 61 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 61 (242)
.++.+..+++++|+|...+.-. ......+.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhh--HHHHhcchhheeecccc
Confidence 3444555555555555443221 12233455566666666
No 111
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=50.16 E-value=4.7 Score=28.52 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=0.8
Q ss_pred ehhhhhhhHhhhhHHhhhcch
Q 026180 195 IGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~ 215 (242)
||+.++++++++++.+++++|
T Consensus 29 IGiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp SS-------------------
T ss_pred ceeHHHHHHHHHHHhheeeee
Confidence 444333333333333333333
No 112
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=50.11 E-value=10 Score=25.84 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=13.8
Q ss_pred cceeeeehhhhhhhHhhhhHHhhhcchhhHH
Q 026180 189 GWKTVLIGYASGTVIGVVLGHIFSTRKYEWL 219 (242)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 219 (242)
.|.+++.|. +++++++++.++++.+.+|+
T Consensus 41 yWpyLA~GG--G~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGG--GLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccc--hhhhHHHHHHHHHHhhhhhh
Confidence 455555553 44444444444444444444
No 113
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=49.49 E-value=12 Score=33.12 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=9.3
Q ss_pred eeeehhhhhhhHhhhhHHhhhc
Q 026180 192 TVLIGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~ 213 (242)
++.|+|++++||+.++.|+.|+
T Consensus 369 IaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred eeeeeehhHHHHHHHHHHHhhh
Confidence 3334444444444444444443
No 114
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=48.42 E-value=18 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.049 Sum_probs=18.4
Q ss_pred eeeeehhhhhhhHhhhhHHhhhcchhhHHHHHh
Q 026180 191 KTVLIGYASGTVIGVVLGHIFSTRKYEWLAKTF 223 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 223 (242)
..|.+++++|.|++++++.+++.+.++.+.++.
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRRRQGYV 262 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 444455566666666666666665544444443
No 115
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=46.28 E-value=3.4 Score=30.74 Aligned_cols=26 Identities=12% Similarity=-0.178 Sum_probs=13.4
Q ss_pred eeehhhhhhhHhhhhHHhhhcchhhH
Q 026180 193 VLIGYASGTVIGVVLGHIFSTRKYEW 218 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 218 (242)
+++|+.+.+++++..+.++|.|+++-
T Consensus 12 i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHHHHHHhcceEEEeeccC
Confidence 44455444444555555566655543
No 116
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=46.24 E-value=9.2 Score=36.40 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=6.8
Q ss_pred hHHhhhcchhhHHHH
Q 026180 207 LGHIFSTRKYEWLAK 221 (242)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (242)
.+++++|+|++|+.+
T Consensus 291 ~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 291 CVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHhhhcccCCcc
Confidence 333444555555443
No 117
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.80 E-value=9.7 Score=34.75 Aligned_cols=63 Identities=29% Similarity=0.225 Sum_probs=35.8
Q ss_pred hcCccEEEccCCCCccCcc--hhccCCCCCCEEeccCC--CCCCCCC-cccCCCCCCCEEeCCCCCCCC
Q 026180 50 SNLITAIILSNNSFVGEIP--TSIANLKGLRTLNLSTN--SLQGHIP-PTLGNLIVLESLDLSNNKLSG 113 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~L~~n--~l~~~~p-~~~~~l~~L~~L~l~~N~l~~ 113 (242)
.+.+..+.|++|++..... ..-...++|..|+|++| .+....- ..++ ...|+.|.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCcccc
Confidence 4456677788888764321 11234577888888888 3331111 1122 2446777888887764
No 118
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=45.27 E-value=9.7 Score=33.71 Aligned_cols=108 Identities=22% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCCCCcccceeee--EEEeecCCchhhHHHhhcCccEEEccCCC-CccCcchhcc-CCCCCCEEeccCCC-CCCCCCcc-
Q 026180 21 RYPALTYYGFSYY--SLTLSNKGTELEYEKLSNLITAIILSNNS-FVGEIPTSIA-NLKGLRTLNLSTNS-LQGHIPPT- 94 (242)
Q Consensus 21 ~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~p~~~~-~l~~L~~L~L~~n~-l~~~~p~~- 94 (242)
..++|+.|+++++ .+....... .........|+.|+++.+. ++...=..+. ..++|+.|.+..+. +++..-..
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLL-LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHh-hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 5677888888753 111111111 1123345778888888877 5533222222 36788888866655 44322222
Q ss_pred cCCCCCCCEEeCCCCCCCCC--CcccccCCCcccEEe
Q 026180 95 LGNLIVLESLDLSNNKLSGQ--IPQQLGELTTLEVFD 129 (242)
Q Consensus 95 ~~~l~~L~~L~l~~N~l~~~--~p~~~~~l~~L~~L~ 129 (242)
...++.|+.|+++.+..... +......+++|+.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 34567788888887655311 122233455555544
No 119
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=45.15 E-value=26 Score=27.46 Aligned_cols=28 Identities=4% Similarity=-0.275 Sum_probs=15.0
Q ss_pred hhhhhhHhhhhHHhhhcchhhHHHHHhh
Q 026180 197 YASGTVIGVVLGHIFSTRKYEWLAKTFR 224 (242)
Q Consensus 197 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 224 (242)
++++..++++++++++.+|..++.++..
T Consensus 15 lv~a~g~l~~vllfIfaKRQI~Rf~lrs 42 (186)
T PF07406_consen 15 LVIAYGSLVFVLLFIFAKRQIMRFALRS 42 (186)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444555556666666666654
No 120
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=45.00 E-value=14 Score=28.90 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=13.4
Q ss_pred cceeeeehhhhhhhHhhhhHHhhhcc
Q 026180 189 GWKTVLIGYASGTVIGVVLGHIFSTR 214 (242)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~~~~~~~~~ 214 (242)
.+..++|++-++++++++++++++.+
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~ 181 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFW 181 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhee
Confidence 44556666655555544444444443
No 121
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=42.26 E-value=13 Score=21.74 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=11.3
Q ss_pred ehhhhhhhHhhhhHHhhhcchhhHH
Q 026180 195 IGYASGTVIGVVLGHIFSTRKYEWL 219 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~~~~~ 219 (242)
.+.+++++++++.++..+..+++..
T Consensus 9 ~sYg~t~~~l~~l~~~~~~~~r~~~ 33 (46)
T PF04995_consen 9 SSYGVTALVLAGLIVWSLRRRRRLR 33 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 122
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=42.12 E-value=24 Score=32.91 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=3.6
Q ss_pred eeeeehhh
Q 026180 191 KTVLIGYA 198 (242)
Q Consensus 191 ~~~~~~~~ 198 (242)
.||++|++
T Consensus 269 lWII~gVl 276 (684)
T PF12877_consen 269 LWIIAGVL 276 (684)
T ss_pred eEEEehHh
Confidence 34445543
No 123
>PF15050 SCIMP: SCIMP protein
Probab=38.89 E-value=17 Score=26.08 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=6.5
Q ss_pred ehhhhhhhHhhhhHHhhh
Q 026180 195 IGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~ 212 (242)
|..++.+++.+++.++++
T Consensus 11 iLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 11 ILAVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 124
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.41 E-value=18 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=10.9
Q ss_pred ehhhhhhhHhhhhHHhhhc
Q 026180 195 IGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~ 213 (242)
++++++++++++..+++.+
T Consensus 8 l~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 8 LLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655544
No 125
>PRK00523 hypothetical protein; Provisional
Probab=38.24 E-value=27 Score=22.63 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=9.1
Q ss_pred hhHhhhhHHhhhcchhhHHHHHhh
Q 026180 201 TVIGVVLGHIFSTRKYEWLAKTFR 224 (242)
Q Consensus 201 ~v~~~~~~~~~~~~~~~~~~~~~~ 224 (242)
+++++++.+++.+ ++..++.+
T Consensus 15 li~G~~~Gffiar---k~~~k~l~ 35 (72)
T PRK00523 15 LIVGGIIGYFVSK---KMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHH---HHHHHHHH
Confidence 3444444444433 44445544
No 126
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=38.16 E-value=1.7 Score=39.30 Aligned_cols=93 Identities=26% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcC-ccEEEccCCCCccC----cchhccCC-CCCCEEeccCCCCCCCCCc-
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNL-ITAIILSNNSFVGE----IPTSIANL-KGLRTLNLSTNSLQGHIPP- 93 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~----~p~~~~~l-~~L~~L~L~~n~l~~~~p~- 93 (242)
...++++|.++.+.++................ +..|++.+|.+... ....+..+ ..++.++++.|.|+.....
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 45688999999887773332222222222333 66799999998743 33344555 6779999999999865543
Q ss_pred ---ccCCCCCCCEEeCCCCCCCC
Q 026180 94 ---TLGNLIVLESLDLSNNKLSG 113 (242)
Q Consensus 94 ---~~~~l~~L~~L~l~~N~l~~ 113 (242)
.+...+.++.+.++.|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 35667899999999999873
No 127
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.80 E-value=14 Score=23.26 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.2
Q ss_pred eeeehh
Q 026180 192 TVLIGY 197 (242)
Q Consensus 192 ~~~~~~ 197 (242)
++.+.+
T Consensus 15 IVLlvV 20 (69)
T PF04689_consen 15 IVLLVV 20 (69)
T ss_pred EEeehH
Confidence 333333
No 128
>PRK11677 hypothetical protein; Provisional
Probab=35.69 E-value=12 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=8.6
Q ss_pred hhhhhHhhhhHHhhhcc
Q 026180 198 ASGTVIGVVLGHIFSTR 214 (242)
Q Consensus 198 ~~~~v~~~~~~~~~~~~ 214 (242)
++++++++++.+++.++
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555553
No 129
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.59 E-value=12 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=0.0
Q ss_pred eeeehhhhhhhHhhhh
Q 026180 192 TVLIGYASGTVIGVVL 207 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~ 207 (242)
.++.++++++++++++
T Consensus 353 ~~l~vVlgvavlivVv 368 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVV 368 (439)
T ss_dssp ----------------
T ss_pred chHHHHHHHHHHHHHH
Confidence 3333334444333333
No 130
>PRK01844 hypothetical protein; Provisional
Probab=35.14 E-value=34 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=10.8
Q ss_pred hhhhHhhhhHHhhhcchhhHHHHHhh
Q 026180 199 SGTVIGVVLGHIFSTRKYEWLAKTFR 224 (242)
Q Consensus 199 ~~~v~~~~~~~~~~~~~~~~~~~~~~ 224 (242)
+++++++++.+++.+ ++..++.+
T Consensus 12 ~~li~G~~~Gff~ar---k~~~k~lk 34 (72)
T PRK01844 12 VALVAGVALGFFIAR---KYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 444455555544444 34444443
No 131
>PF14851 FAM176: FAM176 family
Probab=34.85 E-value=21 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=11.8
Q ss_pred eeeeehhhhhhhHhhhhHHhhhc
Q 026180 191 KTVLIGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~ 213 (242)
++.+.||++|+++.++++++-+.
T Consensus 24 LYFv~gVC~GLlLtLcllV~ris 46 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLLVIRIS 46 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhe
Confidence 44455666665555554444333
No 132
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=33.82 E-value=25 Score=23.62 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=7.1
Q ss_pred hhhhhhhHhhhhHHhhhc
Q 026180 196 GYASGTVIGVVLGHIFST 213 (242)
Q Consensus 196 ~~~~~~v~~~~~~~~~~~ 213 (242)
++++.+.+++++..+++.
T Consensus 21 ~~~al~~l~~~isGl~l~ 38 (88)
T PF13703_consen 21 GILALLLLLLLISGLYLW 38 (88)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333344444444
No 133
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=31.69 E-value=33 Score=27.20 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=6.7
Q ss_pred hhcchhhHHHHHhh
Q 026180 211 FSTRKYEWLAKTFR 224 (242)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (242)
++.-|+.|+.+..+
T Consensus 123 ~~~~Rrs~~~~~~r 136 (202)
T PF06365_consen 123 CCHQRRSWSKKGQR 136 (202)
T ss_pred HhhhhccCCcchhh
Confidence 33344556555444
No 134
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=30.58 E-value=22 Score=23.33 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=8.8
Q ss_pred hhHhhhhHHhhhcchhhHH
Q 026180 201 TVIGVVLGHIFSTRKYEWL 219 (242)
Q Consensus 201 ~v~~~~~~~~~~~~~~~~~ 219 (242)
++++++.+.++..|+.+|+
T Consensus 13 f~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 13 FMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3344444444555554443
No 135
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=30.27 E-value=32 Score=19.99 Aligned_cols=21 Identities=10% Similarity=-0.020 Sum_probs=8.7
Q ss_pred ehhhhhhhHhhhhHHhhhcch
Q 026180 195 IGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~ 215 (242)
.+.++++++++++++..++.+
T Consensus 10 ~sYg~t~l~l~~li~~~~~~~ 30 (45)
T TIGR03141 10 LAYGITALVLAGLILWSLLDR 30 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 136
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.71 E-value=17 Score=26.45 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=9.5
Q ss_pred hhhhhhHhhhhHHhhhcc
Q 026180 197 YASGTVIGVVLGHIFSTR 214 (242)
Q Consensus 197 ~~~~~v~~~~~~~~~~~~ 214 (242)
.++|+||++++.+++.+.
T Consensus 11 a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 11 ALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 137
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.53 E-value=50 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=13.6
Q ss_pred eeeehhhhhhhHhhhhHHhhhcch
Q 026180 192 TVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
+.+||++.+++++++..+.=++|+
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhh
Confidence 455677666666665555444433
No 138
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.31 E-value=33 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=6.6
Q ss_pred hhhhHhhhhHHhhhc
Q 026180 199 SGTVIGVVLGHIFST 213 (242)
Q Consensus 199 ~~~v~~~~~~~~~~~ 213 (242)
+++|+++++.+++.+
T Consensus 4 i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 139
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=29.07 E-value=18 Score=31.37 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=0.0
Q ss_pred eeehhhhhhhHhhhhHHh-hhcc
Q 026180 193 VLIGYASGTVIGVVLGHI-FSTR 214 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~-~~~~ 214 (242)
.|.||+++++|+.+++++ ++++
T Consensus 11 TITgIcvaLlVVGi~Cvv~aYCK 33 (404)
T PF02158_consen 11 TITGICVALLVVGIVCVVDAYCK 33 (404)
T ss_dssp -----------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 455666666665555555 4443
No 140
>PF15069 FAM163: FAM163 family
Probab=28.61 E-value=57 Score=24.24 Aligned_cols=30 Identities=7% Similarity=-0.031 Sum_probs=16.8
Q ss_pred ehhhhhhhHhhhhHHhhhcchhhHHHHHhh
Q 026180 195 IGYASGTVIGVVLGHIFSTRKYEWLAKTFR 224 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 224 (242)
..++.|.+++.+++++++..-...+.+|+.
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCRLQYYC 34 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCRLQYYC 34 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555555555555555555566677754
No 141
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=28.22 E-value=25 Score=23.51 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=6.0
Q ss_pred ceeeeehhhhhhhHhh
Q 026180 190 WKTVLIGYASGTVIGV 205 (242)
Q Consensus 190 ~~~~~~~~~~~~v~~~ 205 (242)
|..++.+.+++++++.
T Consensus 16 ~yyiiA~gga~llL~~ 31 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVA 31 (87)
T ss_pred eeHHHhhccHHHHHHH
Confidence 3333333333333333
No 142
>PF14851 FAM176: FAM176 family
Probab=27.95 E-value=28 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred eeehhhhhhhHhhhhHHhhhcchhhHHH
Q 026180 193 VLIGYASGTVIGVVLGHIFSTRKYEWLA 220 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 220 (242)
+++..+.++.++++++++++..+-.++.
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc~~ 49 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISCRP 49 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeec
Confidence 4566789999999999999988877743
No 143
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.03 E-value=46 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=8.6
Q ss_pred CCcccEEecCCCc
Q 026180 122 LTTLEVFDVSDNL 134 (242)
Q Consensus 122 l~~L~~L~l~~N~ 134 (242)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777664
No 144
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=27.02 E-value=1.2e+02 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=8.0
Q ss_pred eeeehhhhhhhHhhhhHHhhhc
Q 026180 192 TVLIGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~ 213 (242)
+|-|-|.+.+|++++++.+++.
T Consensus 101 ~iTITvSlImViaAliTtlvlK 122 (205)
T PF15298_consen 101 IITITVSLIMVIAALITTLVLK 122 (205)
T ss_pred EEEEeeehhHHHHHhhhhhhhh
Confidence 3333333333333333333333
No 145
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=26.98 E-value=33 Score=19.87 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 026180 156 NPGLCGQPLS 165 (242)
Q Consensus 156 n~~~c~~~~~ 165 (242)
||+.|+|...
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 7899998664
No 146
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=26.87 E-value=95 Score=26.29 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=5.6
Q ss_pred hhHhhhhHHhhhcc
Q 026180 201 TVIGVVLGHIFSTR 214 (242)
Q Consensus 201 ~v~~~~~~~~~~~~ 214 (242)
+++++.++++++.+
T Consensus 290 ~~~G~~~~~f~LYK 303 (354)
T PF05795_consen 290 SVLGIPLIFFLLYK 303 (354)
T ss_pred hhHHHHHHHHHHhc
Confidence 33344444444443
No 147
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.15 E-value=53 Score=25.28 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=2.8
Q ss_pred hHhhhhHH
Q 026180 202 VIGVVLGH 209 (242)
Q Consensus 202 v~~~~~~~ 209 (242)
|+++++++
T Consensus 92 v~~Iv~~~ 99 (179)
T PF13908_consen 92 VVLIVCFC 99 (179)
T ss_pred HHhHhhhe
Confidence 33333333
No 148
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.08 E-value=31 Score=23.65 Aligned_cols=14 Identities=0% Similarity=-0.218 Sum_probs=6.7
Q ss_pred hhcchhhHHHHHhh
Q 026180 211 FSTRKYEWLAKTFR 224 (242)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (242)
+|..++.-+++|..
T Consensus 37 IW~~~r~~r~~MKE 50 (121)
T PF10669_consen 37 IWHDSRQVRIRMKE 50 (121)
T ss_pred HhhhHHHHHHHHHH
Confidence 34444445555554
No 149
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=21.97 E-value=1e+02 Score=18.02 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=7.3
Q ss_pred hhhhhhhHhhhhHHhh
Q 026180 196 GYASGTVIGVVLGHIF 211 (242)
Q Consensus 196 ~~~~~~v~~~~~~~~~ 211 (242)
.++.|++++++++.+.
T Consensus 7 ~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 7 LIILGALLLLLLIGIC 22 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 150
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.95 E-value=54 Score=23.93 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=8.8
Q ss_pred eeeeehhhhhhhHhhhhHHh
Q 026180 191 KTVLIGYASGTVIGVVLGHI 210 (242)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~ 210 (242)
..+++.+++++++++++..+
T Consensus 99 ~Yia~~~il~il~~i~is~~ 118 (139)
T PHA03099 99 SYIPSPGIVLVLVGIIITCC 118 (139)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 151
>PHA03164 hypothetical protein; Provisional
Probab=21.77 E-value=27 Score=22.83 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=6.6
Q ss_pred ehhhhhhhHhhhhHHhh
Q 026180 195 IGYASGTVIGVVLGHIF 211 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~ 211 (242)
.|.+++.++++++++.+
T Consensus 64 tgLaIamILfiifvlyv 80 (88)
T PHA03164 64 TGLAIAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444333333
No 152
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.75 E-value=53 Score=25.27 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCCccccccccceeeeehhhhhhhHhhhhHHhhhcchhhHH
Q 026180 176 PEEDPHSESLFAFGWKTVLIGYASGTVIGVVLGHIFSTRKYEWL 219 (242)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 219 (242)
...............+.-|+++++++++++|.-++-+.+|+.+.
T Consensus 102 ~~~~~~~~~~~~~g~IaGIvsav~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 102 GSDDGNQDGEAEAGTIAGIVSAVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred ccCCCCcccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccce
No 153
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=21.66 E-value=62 Score=25.70 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=15.0
Q ss_pred ccceeeeehhhhhhhHhhhhHHhhhcch
Q 026180 188 FGWKTVLIGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (242)
..|.+..+|+++.++++++++.++++++
T Consensus 178 ~~w~pn~lgiG~v~I~~l~~~~~~l~~~ 205 (209)
T PF11353_consen 178 SFWVPNPLGIGTVLIVLLILLGFLLRRR 205 (209)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666555555555555444433
No 154
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=21.52 E-value=31 Score=30.75 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhHhhhhHHhhhcchhhHHHH
Q 026180 201 TVIGVVLGHIFSTRKYEWLAK 221 (242)
Q Consensus 201 ~v~~~~~~~~~~~~~~~~~~~ 221 (242)
+.++++.+++++.||+.|+.+
T Consensus 438 ~~~~~~~l~~~~~~k~~~~~k 458 (471)
T PF02430_consen 438 TGAVLLALAIYWYYKRLWKTK 458 (471)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHhhhhccc
Confidence 333444455556666666653
No 155
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.50 E-value=43 Score=28.96 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=5.8
Q ss_pred hhhhhHhhhhHHhhh
Q 026180 198 ASGTVIGVVLGHIFS 212 (242)
Q Consensus 198 ~~~~v~~~~~~~~~~ 212 (242)
++.+++.++++++++
T Consensus 313 iaSiIAIvvIVLIMv 327 (353)
T TIGR01477 313 IASIIAILIIVLIMV 327 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444333
No 156
>PHA03189 UL14 tegument protein; Provisional
Probab=21.37 E-value=1.1e+02 Score=25.94 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=10.2
Q ss_pred hhhHHHHHhhcccCCCCccccc
Q 026180 215 KYEWLAKTFRLQPKSNGRRRVG 236 (242)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ 236 (242)
..+|.++..+.+....++|++.
T Consensus 314 C~rlc~~r~~~w~~~~~YRRL~ 335 (348)
T PHA03189 314 CGRLCYKRLLGWRHGEGYRRLP 335 (348)
T ss_pred HHHHhcccccccccccccccCC
Confidence 3444444444444445555544
No 157
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.27 E-value=53 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.309 Sum_probs=10.7
Q ss_pred eeehhhhhhhHhhhhHHhhhcchhhH
Q 026180 193 VLIGYASGTVIGVVLGHIFSTRKYEW 218 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 218 (242)
.++++++|+++++++++.++. |+-|
T Consensus 120 ~i~~~i~g~ll~i~~giy~~~-r~~~ 144 (145)
T PF10661_consen 120 TILLSIGGILLAICGGIYVVL-RKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 334444444444444443333 3344
No 158
>PTZ00046 rifin; Provisional
Probab=21.21 E-value=43 Score=29.00 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=5.9
Q ss_pred hhhhhHhhhhHHhhh
Q 026180 198 ASGTVIGVVLGHIFS 212 (242)
Q Consensus 198 ~~~~v~~~~~~~~~~ 212 (242)
++.+++.++++++++
T Consensus 318 iaSiiAIvVIVLIMv 332 (358)
T PTZ00046 318 IASIVAIVVIVLIMV 332 (358)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 159
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.96 E-value=50 Score=27.87 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=9.7
Q ss_pred hhhhHhhhhHHhhhcchhhH
Q 026180 199 SGTVIGVVLGHIFSTRKYEW 218 (242)
Q Consensus 199 ~~~v~~~~~~~~~~~~~~~~ 218 (242)
++++++++++.+++.+|++|
T Consensus 298 l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 298 LIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 33444444444455555556
No 160
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.93 E-value=80 Score=16.43 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=4.5
Q ss_pred hhhhhhhHhhh
Q 026180 196 GYASGTVIGVV 206 (242)
Q Consensus 196 ~~~~~~v~~~~ 206 (242)
+++.+++++++
T Consensus 4 ~vi~g~llv~l 14 (29)
T PRK14750 4 SIVCGALLVLL 14 (29)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 161
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=20.76 E-value=37 Score=27.15 Aligned_cols=29 Identities=7% Similarity=-0.097 Sum_probs=12.3
Q ss_pred ehhhhhhhHhhhhHHhhhcchhhHHHHHh
Q 026180 195 IGYASGTVIGVVLGHIFSTRKYEWLAKTF 223 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 223 (242)
+++++++++++++.+...+++-+.+++|-
T Consensus 190 ~~~v~~i~~i~vv~i~~irR~i~lkYrYg 218 (226)
T PHA02662 190 LLAVAAVTVLGVVAVSLLRRALRIRFRYS 218 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeec
Confidence 33334344444444444444444444443
No 162
>PRK10132 hypothetical protein; Provisional
Probab=20.66 E-value=77 Score=22.40 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=5.9
Q ss_pred cceeeeehhhhhhhH
Q 026180 189 GWKTVLIGYASGTVI 203 (242)
Q Consensus 189 ~~~~~~~~~~~~~v~ 203 (242)
.|..+.|+.++|+++
T Consensus 86 Pw~svgiaagvG~ll 100 (108)
T PRK10132 86 PWCSVGTAAAVGIFI 100 (108)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344433333333333
Done!