Query 026180
Match_columns 242
No_of_seqs 217 out of 3134
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 6.2E-24 2.1E-28 198.5 9.0 124 50-174 631-754 (768)
2 2v70_A SLIT-2, SLIT homolog 2 99.9 1.1E-21 3.9E-26 156.9 11.9 154 2-164 16-171 (220)
3 2v9t_B SLIT homolog 2 protein 99.9 1.3E-21 4.4E-26 156.5 11.9 154 2-164 16-170 (220)
4 3m19_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 156.7 13.5 154 2-161 40-194 (251)
5 2o6q_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 158.3 13.5 156 2-163 66-222 (270)
6 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-21 1.8E-25 160.8 9.7 157 2-168 154-312 (313)
7 3j0a_A TOLL-like receptor 5; m 99.8 3.8E-21 1.3E-25 181.4 8.9 158 2-165 343-566 (844)
8 3e6j_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 149.0 12.6 152 2-163 24-176 (229)
9 1p9a_G Platelet glycoprotein I 99.8 2.1E-20 7.1E-25 155.6 11.5 160 2-164 36-213 (290)
10 3rfs_A Internalin B, repeat mo 99.8 3.1E-20 1.1E-24 153.0 12.2 154 2-163 68-222 (272)
11 2v70_A SLIT-2, SLIT homolog 2 99.8 4.4E-20 1.5E-24 147.6 11.0 133 2-140 37-170 (220)
12 1w8a_A SLIT protein; signaling 99.8 6.8E-20 2.3E-24 143.5 11.7 132 2-141 13-144 (192)
13 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.7E-24 145.3 11.3 133 2-140 37-169 (220)
14 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-20 1.1E-24 153.6 8.4 131 2-138 61-192 (285)
15 2xot_A Amphoterin-induced prot 99.8 2.3E-20 7.8E-25 159.9 7.3 157 2-163 44-206 (361)
16 3zyj_A Leucine-rich repeat-con 99.8 1E-19 3.5E-24 159.6 11.0 159 2-164 117-297 (440)
17 2o6s_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 139.8 13.5 153 2-163 12-165 (208)
18 3m19_A Variable lymphocyte rec 99.8 7.2E-20 2.5E-24 149.0 8.0 134 1-140 63-196 (251)
19 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4.3E-24 151.5 9.7 156 2-163 106-265 (306)
20 3zyi_A Leucine-rich repeat-con 99.8 1.7E-19 5.8E-24 158.8 10.6 159 2-164 128-308 (452)
21 2o6s_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 139.9 11.9 135 1-141 32-166 (208)
22 3e6j_A Variable lymphocyte rec 99.8 3E-19 1E-23 143.6 10.6 133 1-140 44-176 (229)
23 2z62_A TOLL-like receptor 4, v 99.8 3.9E-19 1.3E-23 146.4 9.7 131 2-138 33-164 (276)
24 2o6q_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 142.1 12.8 151 2-158 42-193 (270)
25 4g8a_A TOLL-like receptor 4; l 99.8 7.1E-19 2.4E-23 159.7 10.4 135 1-141 56-191 (635)
26 3rfs_A Internalin B, repeat mo 99.8 1.6E-18 5.5E-23 142.7 11.4 135 1-141 89-223 (272)
27 3vq2_A TLR4, TOLL-like recepto 99.8 7.7E-19 2.6E-23 159.5 9.8 157 2-165 404-564 (606)
28 2wfh_A SLIT homolog 2 protein 99.8 1.6E-18 5.4E-23 135.8 10.2 128 2-139 15-142 (193)
29 1p9a_G Platelet glycoprotein I 99.8 3.3E-18 1.1E-22 142.2 11.1 124 2-137 15-138 (290)
30 1ozn_A Reticulon 4 receptor; N 99.8 6.8E-18 2.3E-22 139.6 12.8 150 2-157 37-188 (285)
31 4g8a_A TOLL-like receptor 4; l 99.7 4E-18 1.4E-22 154.8 10.7 156 3-164 426-585 (635)
32 3v47_A TOLL-like receptor 5B a 99.7 1.3E-17 4.4E-22 146.3 12.3 140 21-164 273-413 (455)
33 2o6r_A Variable lymphocyte rec 99.7 1.1E-17 3.6E-22 129.0 10.3 130 2-140 12-141 (177)
34 2wfh_A SLIT homolog 2 protein 99.7 7.3E-18 2.5E-22 132.0 9.2 131 26-164 13-144 (193)
35 1w8a_A SLIT protein; signaling 99.7 6.2E-18 2.1E-22 132.2 8.5 132 26-164 11-144 (192)
36 2z63_A TOLL-like receptor 4, v 99.7 4.9E-18 1.7E-22 152.9 8.9 157 2-164 378-536 (570)
37 2z62_A TOLL-like receptor 4, v 99.7 7.7E-18 2.6E-22 138.6 9.1 149 2-156 57-210 (276)
38 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-18 7.7E-23 144.7 5.9 149 2-157 81-232 (313)
39 3v47_A TOLL-like receptor 5B a 99.7 1.3E-17 4.4E-22 146.3 10.7 135 2-142 280-414 (455)
40 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 143.1 9.9 148 2-158 23-175 (361)
41 1ziw_A TOLL-like receptor 3; i 99.7 1.5E-17 5.2E-22 153.0 10.0 140 21-164 478-627 (680)
42 3zyj_A Leucine-rich repeat-con 99.7 3.4E-17 1.2E-21 143.6 11.7 148 2-156 69-217 (440)
43 3rgz_A Protein brassinosteroid 99.7 1.3E-17 4.6E-22 155.7 9.5 156 2-163 399-555 (768)
44 3t6q_A CD180 antigen; protein- 99.7 7E-18 2.4E-22 153.2 7.2 160 2-164 381-565 (606)
45 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 143.6 11.7 149 1-156 79-228 (452)
46 2id5_A Lingo-1, leucine rich r 99.7 1.6E-17 5.4E-22 146.9 8.9 160 2-163 157-337 (477)
47 2xwt_C Thyrotropin receptor; s 99.7 9.3E-18 3.2E-22 135.4 6.7 147 2-157 36-190 (239)
48 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 130.6 7.5 143 2-157 49-192 (197)
49 4fcg_A Uncharacterized protein 99.7 1.8E-17 6.3E-22 140.1 8.0 147 2-158 86-241 (328)
50 3vq2_A TLR4, TOLL-like recepto 99.7 5.2E-17 1.8E-21 147.4 11.6 135 2-142 37-172 (606)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.9E-17 9.8E-22 148.2 9.7 155 2-164 358-515 (562)
52 2z66_A Variable lymphocyte rec 99.7 1.7E-17 5.7E-22 138.5 7.4 151 2-158 83-235 (306)
53 4eco_A Uncharacterized protein 99.7 2.1E-17 7.3E-22 151.4 8.7 153 2-160 438-601 (636)
54 2z7x_B TOLL-like receptor 1, v 99.7 3.1E-17 1.1E-21 146.4 9.0 155 2-164 329-486 (520)
55 2z80_A TOLL-like receptor 2, v 99.7 4.1E-18 1.4E-22 145.2 2.7 155 2-163 129-318 (353)
56 2id5_A Lingo-1, leucine rich r 99.7 2.9E-17 1E-21 145.1 8.1 130 2-137 37-166 (477)
57 2z80_A TOLL-like receptor 2, v 99.7 2.8E-17 9.5E-22 140.0 7.6 135 2-142 57-193 (353)
58 3oja_A Leucine-rich immune mol 99.7 3.3E-17 1.1E-21 145.6 8.2 110 49-162 142-253 (487)
59 1wwl_A Monocyte differentiatio 99.7 1.7E-17 5.7E-22 139.2 5.2 151 2-158 154-308 (312)
60 4fcg_A Uncharacterized protein 99.7 1E-16 3.4E-21 135.5 9.6 156 1-161 131-292 (328)
61 1xku_A Decorin; proteoglycan, 99.7 1.5E-16 5.1E-21 134.2 10.4 148 2-157 126-274 (330)
62 3g39_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 119.7 11.6 92 50-141 29-120 (170)
63 3o6n_A APL1; leucine-rich repe 99.7 5.2E-17 1.8E-21 140.1 7.4 131 2-138 50-180 (390)
64 2z63_A TOLL-like receptor 4, v 99.7 1E-16 3.4E-21 144.3 9.5 134 2-141 33-167 (570)
65 2ell_A Acidic leucine-rich nuc 99.7 8.3E-17 2.8E-21 122.8 7.5 126 2-136 29-160 (168)
66 3t6q_A CD180 antigen; protein- 99.7 7.7E-17 2.6E-21 146.3 8.4 133 2-140 38-170 (606)
67 4glp_A Monocyte differentiatio 99.7 1.8E-17 6E-22 138.9 3.8 150 2-158 150-306 (310)
68 1ziw_A TOLL-like receptor 3; i 99.7 9.5E-17 3.3E-21 147.7 8.8 149 2-156 30-181 (680)
69 3o6n_A APL1; leucine-rich repe 99.7 2.6E-16 8.9E-21 135.6 10.7 105 2-112 74-178 (390)
70 2ft3_A Biglycan; proteoglycan, 99.7 1E-16 3.5E-21 135.3 7.8 82 75-157 193-275 (332)
71 3oja_B Anopheles plasmodium-re 99.7 9E-17 3.1E-21 146.1 7.8 131 2-138 56-186 (597)
72 3oja_B Anopheles plasmodium-re 99.7 2.6E-16 8.8E-21 143.1 10.7 81 2-88 104-184 (597)
73 2z81_A CD282 antigen, TOLL-lik 99.7 1.1E-16 3.7E-21 143.6 7.3 135 2-142 31-167 (549)
74 2o6r_A Variable lymphocyte rec 99.6 7.6E-16 2.6E-20 118.5 10.8 132 25-163 9-141 (177)
75 3o53_A Protein LRIM1, AGAP0063 99.6 8.9E-17 3E-21 135.1 5.8 148 2-162 104-253 (317)
76 3j0a_A TOLL-like receptor 5; m 99.6 3.1E-16 1.1E-20 147.9 10.0 150 2-157 29-185 (844)
77 2r9u_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 117.4 11.2 91 50-140 32-122 (174)
78 4ecn_A Leucine-rich repeat pro 99.6 2.7E-16 9.2E-21 148.1 9.1 102 52-157 729-838 (876)
79 1wwl_A Monocyte differentiatio 99.6 9E-17 3.1E-21 134.7 4.9 154 2-158 100-265 (312)
80 2xwt_C Thyrotropin receptor; s 99.6 2.5E-16 8.6E-21 126.9 7.2 148 2-158 60-217 (239)
81 1xku_A Decorin; proteoglycan, 99.6 8.5E-16 2.9E-20 129.5 9.0 145 2-158 105-252 (330)
82 2je0_A Acidic leucine-rich nuc 99.6 1.9E-16 6.6E-21 118.4 4.3 108 23-137 17-127 (149)
83 2z7x_B TOLL-like receptor 1, v 99.6 2.5E-16 8.6E-21 140.5 5.6 144 1-158 4-150 (520)
84 4glp_A Monocyte differentiatio 99.6 4.9E-16 1.7E-20 130.0 6.7 157 2-159 96-264 (310)
85 1h6t_A Internalin B; cell adhe 99.6 8.2E-16 2.8E-20 127.8 7.8 101 50-157 111-211 (291)
86 3oja_A Leucine-rich immune mol 99.6 2.9E-16 9.9E-21 139.6 4.8 105 51-157 120-225 (487)
87 2ft3_A Biglycan; proteoglycan, 99.6 8.8E-15 3E-19 123.5 13.4 123 2-136 38-160 (332)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.1E-15 3.7E-20 137.9 8.2 144 1-158 35-181 (562)
89 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.4E-20 124.3 8.5 142 2-161 46-187 (263)
90 2z81_A CD282 antigen, TOLL-lik 99.6 1.1E-15 3.8E-20 137.0 8.0 147 2-157 10-159 (549)
91 1h6u_A Internalin H; cell adhe 99.6 2.1E-15 7.3E-20 126.2 8.8 81 50-136 106-186 (308)
92 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.9E-20 119.1 6.9 124 2-137 71-195 (197)
93 3g39_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 112.0 11.1 108 53-163 11-119 (170)
94 4b8c_D Glucose-repressible alc 99.6 4.3E-16 1.5E-20 144.7 4.2 116 14-139 217-332 (727)
95 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.6E-20 127.4 6.7 142 2-160 90-231 (308)
96 4fmz_A Internalin; leucine ric 99.6 2.6E-15 8.9E-20 127.2 7.9 140 2-157 182-322 (347)
97 3o53_A Protein LRIM1, AGAP0063 99.6 9.3E-16 3.2E-20 128.8 4.8 119 2-136 63-182 (317)
98 1a9n_A U2A', U2A'; complex (nu 99.6 9E-16 3.1E-20 118.1 3.9 124 1-136 1-126 (176)
99 1h6t_A Internalin B; cell adhe 99.6 8.8E-15 3E-19 121.5 10.1 140 2-158 51-190 (291)
100 1m9s_A Internalin B; cell inva 99.6 5.2E-15 1.8E-19 134.6 9.4 139 2-157 70-208 (605)
101 1a9n_A U2A', U2A'; complex (nu 99.6 4.9E-16 1.7E-20 119.6 2.3 124 2-136 24-153 (176)
102 2r9u_A Variable lymphocyte rec 99.6 2.5E-14 8.4E-19 110.0 11.1 107 54-163 15-122 (174)
103 4eco_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 136.7 7.1 144 6-156 192-363 (636)
104 2ell_A Acidic leucine-rich nuc 99.6 7.1E-15 2.4E-19 112.0 7.4 130 21-157 22-158 (168)
105 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.8E-19 119.2 7.6 121 1-138 67-187 (263)
106 4ecn_A Leucine-rich repeat pro 99.5 5.5E-15 1.9E-19 139.3 6.1 147 1-157 452-630 (876)
107 1m9s_A Internalin B; cell inva 99.5 3E-14 1E-18 129.6 10.3 140 1-157 47-186 (605)
108 1o6v_A Internalin A; bacterial 99.5 2.8E-14 9.7E-19 125.8 8.5 140 3-159 249-388 (466)
109 1dce_A Protein (RAB geranylger 99.5 1.7E-14 5.7E-19 130.4 7.1 122 4-142 430-552 (567)
110 4fmz_A Internalin; leucine ric 99.5 2E-14 6.7E-19 121.8 7.0 142 2-158 204-345 (347)
111 2je0_A Acidic leucine-rich nuc 99.5 8.6E-15 2.9E-19 109.4 4.2 122 2-132 22-149 (149)
112 2ifg_A High affinity nerve gro 99.5 6.8E-14 2.3E-18 118.6 9.8 90 50-140 30-120 (347)
113 4b8c_D Glucose-repressible alc 99.5 6.2E-14 2.1E-18 130.2 9.5 146 2-159 178-329 (727)
114 2ifg_A High affinity nerve gro 99.5 1.9E-13 6.4E-18 115.9 10.6 103 2-113 13-117 (347)
115 3cvr_A Invasion plasmid antige 99.5 8.5E-14 2.9E-18 125.7 8.1 30 2-37 85-114 (571)
116 1dce_A Protein (RAB geranylger 99.5 1.3E-13 4.4E-18 124.6 9.2 133 21-158 407-545 (567)
117 4ay9_X Follicle-stimulating ho 99.5 8.5E-14 2.9E-18 118.4 7.2 85 2-92 35-121 (350)
118 3cvr_A Invasion plasmid antige 99.5 5.3E-14 1.8E-18 127.0 6.1 89 2-112 105-193 (571)
119 1o6v_A Internalin A; bacterial 99.5 1.8E-13 6.3E-18 120.6 9.3 83 50-138 242-324 (466)
120 3bz5_A Internalin-J, INLJ; leu 99.4 6E-13 2.1E-17 117.2 10.5 113 2-134 47-159 (457)
121 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4.2E-17 115.3 11.2 60 72-137 188-247 (457)
122 1jl5_A Outer protein YOPM; leu 99.4 1.5E-12 5.1E-17 114.7 11.2 116 2-137 136-251 (454)
123 1jl5_A Outer protein YOPM; leu 99.4 1.8E-12 6E-17 114.2 10.9 114 2-137 96-209 (454)
124 1ds9_A Outer arm dynein; leuci 99.3 3.9E-15 1.3E-19 116.7 -7.7 115 16-141 43-158 (198)
125 3goz_A Leucine-rich repeat-con 99.3 2.2E-14 7.5E-19 122.6 -4.3 135 2-138 27-182 (362)
126 3g06_A SSPH2 (leucine-rich rep 99.3 1.8E-12 6.2E-17 118.2 8.1 110 22-140 180-301 (622)
127 2ca6_A RAN GTPase-activating p 99.3 2.3E-14 7.7E-19 123.4 -4.5 16 21-36 92-107 (386)
128 2ca6_A RAN GTPase-activating p 99.3 9.9E-15 3.4E-19 125.6 -7.0 32 2-36 99-135 (386)
129 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.9E-19 114.0 -6.3 123 1-136 52-185 (198)
130 4ay9_X Follicle-stimulating ho 99.3 2.6E-12 9E-17 109.2 7.6 60 76-136 155-215 (350)
131 3g06_A SSPH2 (leucine-rich rep 99.3 5.6E-12 1.9E-16 115.0 9.3 142 2-159 126-297 (622)
132 2ast_B S-phase kinase-associat 99.3 2E-13 7E-18 114.9 -1.8 150 2-157 75-233 (336)
133 2ast_B S-phase kinase-associat 99.3 6.5E-13 2.2E-17 111.8 0.5 127 2-134 98-233 (336)
134 3goz_A Leucine-rich repeat-con 99.2 2.8E-13 9.7E-18 115.6 -2.6 134 2-137 3-152 (362)
135 3sb4_A Hypothetical leucine ri 99.2 7.9E-11 2.7E-15 99.1 8.3 85 50-136 225-310 (329)
136 1z7x_W Ribonuclease inhibitor; 99.1 2.5E-13 8.5E-18 119.1 -8.1 134 2-137 204-355 (461)
137 3sb4_A Hypothetical leucine ri 99.1 6.2E-11 2.1E-15 99.7 6.0 123 2-132 54-283 (329)
138 1z7x_W Ribonuclease inhibitor; 99.0 4E-12 1.4E-16 111.4 -5.3 109 2-112 8-126 (461)
139 3un9_A NLR family member X1; l 99.0 4E-12 1.4E-16 109.1 -5.8 153 2-157 77-250 (372)
140 3un9_A NLR family member X1; l 98.9 2.2E-11 7.4E-16 104.6 -5.1 135 2-137 106-253 (372)
141 3rw6_A Nuclear RNA export fact 98.6 3.7E-08 1.3E-12 80.4 5.5 65 50-115 169-236 (267)
142 1io0_A Tropomodulin; LRR prote 98.6 3.3E-09 1.1E-13 82.0 -1.6 116 21-136 34-164 (185)
143 3ogk_B Coronatine-insensitive 98.5 3.1E-08 1.1E-12 89.2 3.0 68 21-88 162-233 (592)
144 4fdw_A Leucine rich hypothetic 98.5 5.2E-07 1.8E-11 78.0 9.7 98 2-110 185-282 (401)
145 4fdw_A Leucine rich hypothetic 98.4 7E-07 2.4E-11 77.2 9.2 141 3-156 209-355 (401)
146 3ogk_B Coronatine-insensitive 98.4 1.3E-07 4.3E-12 85.2 4.1 127 2-132 117-252 (592)
147 3rw6_A Nuclear RNA export fact 98.4 7.2E-08 2.5E-12 78.7 1.9 68 72-141 167-238 (267)
148 1io0_A Tropomodulin; LRR prote 98.2 3.2E-08 1.1E-12 76.4 -4.8 111 2-112 41-164 (185)
149 2p1m_B Transport inhibitor res 98.1 1.8E-07 6E-12 84.3 -2.7 111 22-136 371-494 (594)
150 2p1m_B Transport inhibitor res 98.1 6.4E-07 2.2E-11 80.6 0.4 80 2-83 161-243 (594)
151 2ra8_A Uncharacterized protein 97.8 2.5E-06 8.5E-11 72.7 0.1 109 21-137 170-293 (362)
152 3e4g_A ATP synthase subunit S, 97.8 4.4E-06 1.5E-10 63.7 0.9 83 52-134 62-150 (176)
153 4h09_A Hypothetical leucine ri 97.7 0.00011 3.7E-09 62.5 8.2 79 50-130 262-340 (379)
154 4gt6_A Cell surface protein; l 97.7 0.00017 5.7E-09 61.8 9.1 119 7-135 251-369 (394)
155 4fs7_A Uncharacterized protein 97.5 0.00048 1.6E-08 58.9 9.0 80 50-132 296-375 (394)
156 2ra8_A Uncharacterized protein 97.4 4.7E-05 1.6E-09 64.8 2.5 85 49-136 170-265 (362)
157 3rfe_A Platelet glycoprotein I 97.4 0.00038 1.3E-08 50.2 6.9 37 100-136 32-68 (130)
158 3rfe_A Platelet glycoprotein I 97.4 0.00022 7.4E-09 51.5 5.5 57 54-112 11-68 (130)
159 3e4g_A ATP synthase subunit S, 97.4 2E-05 6.8E-10 60.0 -0.3 86 23-112 61-153 (176)
160 4gt6_A Cell surface protein; l 97.4 0.00016 5.6E-09 61.8 5.4 117 7-135 274-390 (394)
161 4h09_A Hypothetical leucine ri 97.4 0.00039 1.3E-08 59.0 7.2 107 9-124 251-357 (379)
162 4fs7_A Uncharacterized protein 97.3 0.00034 1.1E-08 59.9 5.8 106 12-128 288-393 (394)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 6.4E-05 2.2E-09 58.3 -0.9 84 50-133 40-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0012 4.1E-08 51.1 1.7 14 75-88 98-111 (197)
165 2ks1_B Epidermal growth factor 90.1 0.041 1.4E-06 31.3 -0.6 22 192-213 12-33 (44)
166 2l2t_A Receptor tyrosine-prote 86.6 0.081 2.8E-06 30.0 -0.9 18 193-210 12-29 (44)
167 2k1k_A Ephrin type-A receptor 84.7 0.27 9.4E-06 26.9 0.7 9 196-204 15-23 (38)
168 2k9y_A Ephrin type-A receptor 69.6 1.1 3.8E-05 24.7 0.3 13 193-205 15-27 (41)
169 2klu_A T-cell surface glycopro 66.9 2.3 8E-05 26.0 1.4 17 193-209 12-28 (70)
170 2lz0_A Uncharacterized protein 61.9 7.7 0.00026 25.9 3.4 49 5-60 4-52 (100)
171 2lz0_A Uncharacterized protein 54.3 34 0.0012 22.6 5.7 43 63-106 8-50 (100)
172 2knc_B Integrin beta-3; transm 50.1 4.7 0.00016 25.8 0.7 20 193-212 13-32 (79)
173 2jp3_A FXYD domain-containing 45.3 16 0.00053 22.4 2.4 21 195-215 20-40 (67)
174 2jo1_A Phospholemman; FXYD1, N 37.3 18 0.00063 22.3 1.9 21 195-215 19-39 (72)
175 2zxe_G FXYD10, phospholemman-l 36.1 20 0.00069 22.3 1.9 21 195-215 22-42 (74)
176 2k1a_A Integrin alpha-IIB; sin 33.8 13 0.00043 20.6 0.7 21 192-212 12-32 (42)
177 2knc_A Integrin alpha-IIB; tra 31.6 9.2 0.00031 22.5 -0.1 21 192-212 14-34 (54)
178 4ev6_A Magnesium transport pro 27.8 19 0.00065 29.6 1.1 20 199-218 319-338 (339)
179 2l34_A TYRO protein tyrosine k 27.6 19 0.00064 18.8 0.6 15 195-209 10-24 (33)
180 2l8s_A Integrin alpha-1; trans 27.2 20 0.00068 21.0 0.8 20 193-212 12-31 (54)
181 2iub_A CORA, divalent cation t 23.6 29 0.00098 28.9 1.4 21 198-218 342-362 (363)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6.2e-24 Score=198.50 Aligned_cols=124 Identities=44% Similarity=0.713 Sum_probs=116.4
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
++.|+.|+|++|+++|.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCCCCCcCCccccCCCCCCCCCCCCCCCCCCCC
Q 026180 130 VSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLSKQCDNSATS 174 (242)
Q Consensus 130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~c~~~~~~ 174 (242)
+++|+++|.+|...++.++....+.|||.+||.|.. .|....+.
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence 999999999999999999999999999999999887 78765543
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=156.88 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=135.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC-CchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK-GTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+|+++|.++.+|.... ..+++|++++|.|..... ..+ ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus 16 l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~----~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp EECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCG----GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhh----ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 6899999999998543 367899999999987743 333 348899999999999998888899999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGL 159 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~ 159 (242)
+|++|++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|... .+..+..+.+.+|++.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999998888889999999999999999998889999999999999999999998877654 4667788899999999
Q ss_pred CCCCC
Q 026180 160 CGQPL 164 (242)
Q Consensus 160 c~~~~ 164 (242)
|+|+.
T Consensus 167 c~c~l 171 (220)
T 2v70_A 167 CNCYL 171 (220)
T ss_dssp CSGGG
T ss_pred CCCch
Confidence 98864
No 3
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.3e-21 Score=156.54 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=135.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|+++|+++.+|.... ++++.|++++|.|..+....+.. +++|+.|+|++|.|++..|..|..+++|++|+
T Consensus 16 v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~----l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSP----YKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp EECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTT----CTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred EEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhC----CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 6889999999998653 58999999999999877655543 88999999999999988899999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c 160 (242)
|++|+++...+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999996666678999999999999999999889999999999999999999997666533 45677888999999999
Q ss_pred CCCC
Q 026180 161 GQPL 164 (242)
Q Consensus 161 ~~~~ 164 (242)
+|..
T Consensus 167 ~c~l 170 (220)
T 2v9t_B 167 DCHL 170 (220)
T ss_dssp SGGG
T ss_pred CCcc
Confidence 8864
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.7e-21 Score=156.66 Aligned_cols=154 Identities=21% Similarity=0.248 Sum_probs=133.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.++...|. .+++|++|++++|.|.......+ ..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 40 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 40 LDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVF----DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp EECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhHh----ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 68899999999988888 89999999999998886654443 3478999999999999988888889999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c 160 (242)
+++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+|++.|
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999997777778999999999999999997777789999999999999999996665433 45677888899999998
Q ss_pred C
Q 026180 161 G 161 (242)
Q Consensus 161 ~ 161 (242)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 7
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.7e-21 Score=158.29 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=103.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.++...|. .+++|++|++++|.+.......+ ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 66 L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVF----DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp EECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTT----TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHc----ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 45555555555555555 55566666666655554333222 2356677777777777766666677777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c 160 (242)
+++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77777775555557777778888888887776666667777888888888888775443322 34566677788888888
Q ss_pred CCC
Q 026180 161 GQP 163 (242)
Q Consensus 161 ~~~ 163 (242)
+|.
T Consensus 220 ~c~ 222 (270)
T 2o6q_A 220 TCN 222 (270)
T ss_dssp SSS
T ss_pred CCc
Confidence 875
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=5.3e-21 Score=160.76 Aligned_cols=157 Identities=30% Similarity=0.440 Sum_probs=124.8
Q ss_pred cccCCCCCc-ccCCCCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLT-YLQDPLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~-~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
++|++|+|+ .+|.. +. .++ +|++|++++|.+.......+ ..+. |+.|++++|.+++..|..|..+++|+.
T Consensus 154 L~L~~N~l~~~~p~~-l~--~l~~~L~~L~L~~N~l~~~~~~~~----~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 154 ITFDGNRISGAIPDS-YG--SFSKLFTSMTISRNRLTGKIPPTF----ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp EECCSSCCEEECCGG-GG--CCCTTCCEEECCSSEEEEECCGGG----GGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred EECcCCcccCcCCHH-Hh--hhhhcCcEEECcCCeeeccCChHH----hCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 456666666 44433 33 344 66777777776664332222 2234 888888888888888888899999999
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~ 159 (242)
|++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|....+..+..+.+.+|+++
T Consensus 226 L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred EECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 99999999866665 78899999999999999999999999999999999999999999999877888899999999999
Q ss_pred CCCCCCCCC
Q 026180 160 CGQPLSKQC 168 (242)
Q Consensus 160 c~~~~~~~c 168 (242)
|+.|.. .|
T Consensus 305 c~~p~~-~C 312 (313)
T 1ogq_A 305 CGSPLP-AC 312 (313)
T ss_dssp ESTTSS-CC
T ss_pred cCCCCC-CC
Confidence 998765 36
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3.8e-21 Score=181.36 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=98.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecC------------Cc------------------------hhh
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNK------------GT------------------------ELE 45 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------~~------------------------~~~ 45 (242)
+||++|+|..++...|. .+++|++|++++|.+..+.. .. ...
T Consensus 343 L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp EECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred EECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 56777777777777776 67777777777766543211 00 000
Q ss_pred HHHhhcCccEEEccCCCCccCc------------------------------chhccCCCCCCEEeccCCCCCCCCCccc
Q 026180 46 YEKLSNLITAIILSNNSFVGEI------------------------------PTSIANLKGLRTLNLSTNSLQGHIPPTL 95 (242)
Q Consensus 46 ~~~~~~~L~~L~Ls~n~i~~~~------------------------------p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 95 (242)
....+++|+.|+|++|.+++.. +..|..+++|+.|+|++|++++..|..|
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence 1123556666666666665322 2334455666666666666665566666
Q ss_pred CCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCCCCCCC
Q 026180 96 GNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCGQPLS 165 (242)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~ 165 (242)
..+++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+.+.+||+.|+|+..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 6666777777777777655554444 56777777777777666653 346677889999999998753
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=3.5e-20 Score=149.02 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=129.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|.++++++.+|.... ++|++|++++|.|.......+ ..+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus 24 v~c~~~~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP-----TNAQILYLHDNQITKLEPGVF----DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eEccCCCcCccCCCCC-----CCCCEEEcCCCccCccCHHHh----hCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 6789999999998653 689999999999987654443 3478999999999999977777789999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c 160 (242)
|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..+... .+..+..+.+.+||+.|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999777777899999999999999999 778889999999999999999996554332 45677888899999999
Q ss_pred CCC
Q 026180 161 GQP 163 (242)
Q Consensus 161 ~~~ 163 (242)
+|+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 885
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.1e-20 Score=155.62 Aligned_cols=160 Identities=24% Similarity=0.226 Sum_probs=104.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCc-----------------hhhHHHhhcCccEEEccCCCCc
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGT-----------------ELEYEKLSNLITAIILSNNSFV 64 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----------------~~~~~~~~~~L~~L~Ls~n~i~ 64 (242)
++|++|+|+.++...|. .+++|++|++++|.|....... .+.....+++|+.|+|++|+++
T Consensus 36 L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp EECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc
Confidence 45666666666555555 5555555555555544433210 0011123566777777777777
Q ss_pred cCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-
Q 026180 65 GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK- 143 (242)
Q Consensus 65 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~- 143 (242)
+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|...
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 666667777777777777777777666666777777888888888877555556677778888888888877 444433
Q ss_pred CCCCcCCccccCCCCCCCCCC
Q 026180 144 QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 144 ~~~~~~~~~~~~n~~~c~~~~ 164 (242)
....+..+.+.+||+.|+|..
T Consensus 193 ~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TTCCCSEEECCSCCBCCSGGG
T ss_pred ccccCCeEEeCCCCccCcCcc
Confidence 344566778899999998853
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=3.1e-20 Score=153.00 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=119.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++ .+. .+++|++|++++|.+.......+ ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 68 L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 68 LALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVF----DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp EECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHh----cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 677888887765 344 77788888888887765443333 3377888888888888877777788888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c 160 (242)
+++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|.. ..+..+..+.+.+|++.|
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 8888888776667788888888888888888777777788888888888888888766653 346677778888998888
Q ss_pred CCC
Q 026180 161 GQP 163 (242)
Q Consensus 161 ~~~ 163 (242)
.|+
T Consensus 220 ~~~ 222 (272)
T 3rfs_A 220 TCP 222 (272)
T ss_dssp CTT
T ss_pred cCc
Confidence 775
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=147.61 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=121.9
Q ss_pred cccCCCCCcccC-CCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQ-DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++|++|+|+.++ ...|. .+++|++|++++|.|+.+....+. .+++|+.|+|++|.+++..+..|..+++|++|
T Consensus 37 L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 37 LRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGAFE----GASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp EECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred EEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHHhC----CCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 789999999995 46677 899999999999999987765554 38999999999999998888889999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+.++
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999999998889999999999999999999998889999999999999999999998765
No 12
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=6.8e-20 Score=143.47 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=117.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|+++|+|+++|...+. ++++|++++|.|....... .+..+++|+.|+|++|.|++..|..|..+++|++|+
T Consensus 13 l~~s~~~l~~ip~~~~~-----~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIPL-----HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp EECTTSCCSSCCSCCCT-----TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred EEcCCCCcCcCccCCCC-----CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 68999999999986532 8999999999987665421 123488999999999999988899999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++++.++-
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999999988888899999999999999999999999999999999999999999987763
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.1e-19 Score=145.33 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=121.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.++...|. .+++|++|++++|.|..+....+. .+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus 37 L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQ----GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp EECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTTT----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHhh----CCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 68999999999999998 899999999999999877655544 389999999999999977777789999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+...
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999998889999999999999999999998888889999999999999999987544
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.2e-20 Score=153.62 Aligned_cols=131 Identities=19% Similarity=0.144 Sum_probs=64.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++|++|+|+.++...|. .+++|++|++++|. +.......+ ..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 61 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 61 LWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp EECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTT----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHh----cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 45666666666555555 55666666666654 443322222 124455555555555554444445555555555
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 138 (242)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 5555555533333444445555555555544433333344444444444444444433
No 15
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.3e-20 Score=159.88 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=121.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|.. .+++|++|++++|.|..+....+. .+++|+.|+|++|.|+...+..|..+++|++|+
T Consensus 44 L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp EECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChhhcc----CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 688888888888877641 578899999998888877655443 378899999999999877777888899999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccc---cCCCcccEEecCCCccccCCCCCC-CCCC--cCCccccC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL---GELTTLEVFDVSDNLLTGPIPRGK-QFNT--FGKGSFDG 155 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~L~l~~N~l~~~~p~~~-~~~~--~~~~~~~~ 155 (242)
|++|+|++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|.+++..+... .+.. +..+.+.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99999988888888899999999999999986544444 568899999999999884332211 1121 25578999
Q ss_pred CCCCCCCC
Q 026180 156 NPGLCGQP 163 (242)
Q Consensus 156 n~~~c~~~ 163 (242)
||+.|+|.
T Consensus 199 N~~~C~C~ 206 (361)
T 2xot_A 199 NPLECDCK 206 (361)
T ss_dssp SCEECCHH
T ss_pred CCccCCcC
Confidence 99999985
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=159.63 Aligned_cols=159 Identities=17% Similarity=0.122 Sum_probs=127.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchh---------------------hHHHhhcCccEEEccC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTEL---------------------EYEKLSNLITAIILSN 60 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---------------------~~~~~~~~L~~L~Ls~ 60 (242)
+||++|+|+.++...|. .+++|++|++++|.|..+....+. ..+..+++|+.|+|++
T Consensus 117 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 67888888888888777 788888888888877766543221 1223467788888888
Q ss_pred CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
|.++ .+| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp SCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred CcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 8888 455 36788889999999999998888899999999999999999998888889999999999999999996555
Q ss_pred CCC-CCCCcCCccccCCCCCCCCCC
Q 026180 141 RGK-QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 141 ~~~-~~~~~~~~~~~~n~~~c~~~~ 164 (242)
... .+..+..+.+.+||+.|+|..
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hHhccccCCCEEEcCCCCccCCCCc
Confidence 432 456778889999999999954
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.3e-19 Score=139.77 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=122.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++.+++.++.+|... .++|++|++++|.+.......+ ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 12 v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVF----DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp EECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhh----cccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 567888888888654 3488999999988875554433 3478899999999999977677788899999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c 160 (242)
+++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|++.|
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 9999998666667888999999999999998777777888999999999999998655543 345677788889999888
Q ss_pred CCC
Q 026180 161 GQP 163 (242)
Q Consensus 161 ~~~ 163 (242)
.++
T Consensus 163 ~~~ 165 (208)
T 2o6s_A 163 TCP 165 (208)
T ss_dssp CTT
T ss_pred CCC
Confidence 775
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=7.2e-20 Score=149.00 Aligned_cols=134 Identities=20% Similarity=0.216 Sum_probs=120.1
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+++|++|+|+.++...|. .+++|++|++++|.+.......+ ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus 63 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVF----DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp EEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHh----cccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 378999999999999988 89999999999999986654443 348899999999999997777788999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 999999997777789999999999999999998888889999999999999999997644
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.2e-19 Score=151.47 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=88.9
Q ss_pred cccCCCCCcccCC-CCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc-CcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~ 79 (242)
++|++|+|+.++. ..|. .+++|++|++++|.+.......+ ..+++|+.|++++|.+++ ..|..+..+++|++
T Consensus 106 L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp EECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTT----TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhc----ccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 3445555555444 3343 45555555555555443332222 225566666666666654 35556666666666
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-C-CCcCCccccCCC
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-F-NTFGKGSFDGNP 157 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~~n~ 157 (242)
|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|.... + ..+..+.+.+|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 66666666655566666666666666666666655555566666666666666666665554332 2 245556666666
Q ss_pred CCCCCC
Q 026180 158 GLCGQP 163 (242)
Q Consensus 158 ~~c~~~ 163 (242)
+.|+|.
T Consensus 260 ~~~~c~ 265 (306)
T 2z66_A 260 FACTCE 265 (306)
T ss_dssp EECSGG
T ss_pred eecccC
Confidence 666653
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.7e-19 Score=158.76 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=128.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhh---------------------HHHhhcCccEEEccC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELE---------------------YEKLSNLITAIILSN 60 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------------~~~~~~~L~~L~Ls~ 60 (242)
+||++|+|+.++...|. .+++|++|++++|.|..+....+.. .+..+++|+.|+|++
T Consensus 128 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EECCSSCCSBCCTTTSS--SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred EECCCCcCCccChhhhc--ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 68888888888888887 7888888888888877665432211 123467788888888
Q ss_pred CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 61 NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 61 n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
|.+++ +| .+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+
T Consensus 206 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 206 CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred Ccccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 88884 34 46788899999999999998888899999999999999999998888889999999999999999995554
Q ss_pred CCC-CCCCcCCccccCCCCCCCCCC
Q 026180 141 RGK-QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 141 ~~~-~~~~~~~~~~~~n~~~c~~~~ 164 (242)
... .+..+..+.+.+||+.|+|..
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTTT
T ss_pred HHhccccCCCEEEccCCCcCCCCCc
Confidence 432 356778889999999999964
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5e-19 Score=139.89 Aligned_cols=135 Identities=24% Similarity=0.228 Sum_probs=119.9
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+++|++|+|+.++...|. .+++|++|++++|.+..+....+ ..+++|+.|+|++|.+++..+..|..+++|++|
T Consensus 32 ~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 32 YLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVF----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp EEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhc----CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 378999999999999888 89999999999999886554433 348899999999999997777778999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+|.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 9999999977777789999999999999999977777789999999999999999987774
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3e-19 Score=143.61 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=120.1
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+++|++|+|+.++...|. .+++|++|++++|.|..+....+ ..+++|+.|+|++|.|++..+..|..+++|++|
T Consensus 44 ~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 44 ILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF----DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp EEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc----ccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 378999999999998888 89999999999999976654443 348899999999999998778888999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999 888889999999999999999997777789999999999999999998776
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=3.9e-19 Score=146.39 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=93.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+.......+. .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 33 L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp EECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHcc----CCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 67788888888877776 777888888888877766544333 367777777777777766667777777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGP 138 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 138 (242)
+++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|+.|++++|.+++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 777777765555677777777777777777653 466677777777777777766643
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.9e-18 Score=142.08 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=112.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+..+....+ ..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 42 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp EECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTT----SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred EECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhh----cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 57788888888877777 77888888888887765544433 2367888888888888866667778888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~ 158 (242)
+++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+... .+..+..+.+.+|..
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 88888887777777888888888888888886666667888888888888888875544322 345566666777643
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=7.1e-19 Score=159.70 Aligned_cols=135 Identities=21% Similarity=0.273 Sum_probs=121.9
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++||++|+|+.|++..|. .+++|++|++++|.|+.++.+.+.. +++|++|+|++|+|++..+..|.++++|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~----L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTT----CTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcC----CCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 379999999999999999 9999999999999999887766544 8999999999999997777889999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
++++|++++..+..|+.+++|+.|++++|.+++. .|..+..+++|+.|++++|++++..|.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9999999977777899999999999999999864 678889999999999999999876654
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.6e-18 Score=142.66 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=121.5
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+++|++|+|+.++...|. .+++|++|++++|.+.......+ ..+++|+.|++++|.+++..+..|..+++|++|
T Consensus 89 ~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVF----DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp EEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHh----ccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 378999999999999888 89999999999999886554433 348899999999999998888888999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.|.+|.
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 9999999988777889999999999999999988888899999999999999999988875
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=7.7e-19 Score=159.50 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=115.6
Q ss_pred cccCCCCCcccCC-CCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc-CcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG-EIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~ 79 (242)
++|++|++..++. ..|. .+++|++|++++|.+....... ...+++|+.|++++|.+++ ..|..+..+++|++
T Consensus 404 L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGI----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp EECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTT----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred eECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhh----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 3445555544443 3344 4555555555555554432222 2336778888888888886 36778888899999
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCC-CcCCccccCCC
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFN-TFGKGSFDGNP 157 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~-~~~~~~~~~n~ 157 (242)
|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|... .+. .+..+.+.+||
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 999999998888888899999999999999999888888999999999999999998 566543 232 47778899999
Q ss_pred CCCCCCCC
Q 026180 158 GLCGQPLS 165 (242)
Q Consensus 158 ~~c~~~~~ 165 (242)
+.|+|+..
T Consensus 557 ~~c~c~~~ 564 (606)
T 3vq2_A 557 VACICEHQ 564 (606)
T ss_dssp CCCSSTTH
T ss_pred cccCCccH
Confidence 99999763
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=135.84 Aligned_cols=128 Identities=25% Similarity=0.188 Sum_probs=97.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|+++|+|+++|...+ ++|++|++++|.|+.++ ..+..+++|+.|+|++|.|++..+..|..+++|++|+
T Consensus 15 l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-----~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-----KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-----GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-----HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 6788899999887543 47888888888776443 1223467788888888888877777788888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 139 (242)
|++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++.+.+
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 8888888777777888888888888888888665566777888888888888877544
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=3.3e-18 Score=142.25 Aligned_cols=124 Identities=27% Similarity=0.199 Sum_probs=77.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|+|+.+|...+ +++++|++++|.|.......+. .+++|+.|+|++|.+++..+ . ..+++|++|+
T Consensus 15 l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~ 83 (290)
T 1p9a_G 15 VNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLM----PYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD 83 (290)
T ss_dssp EECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGT----TCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred EECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhh----cCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence 6899999999998653 5899999999998766543332 36666777777666664322 1 4555555555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
+++|+++ .+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 5555555 445555555555555555555554444555555555555555555553
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=6.8e-18 Score=139.57 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=118.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC-CccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS-FVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L 80 (242)
++|++|+|+.++...|. .+++|++|++++|.+.......+. .+++|+.|++++|. ++...|..|..+++|++|
T Consensus 37 L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp EECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred EEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC----CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 67888888888888887 788899999988888766544433 37888999999887 776668888888999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNP 157 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 157 (242)
++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 99999988777888888899999999999988776667888889999999999888554432 235566666777764
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=4e-18 Score=154.76 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=128.5
Q ss_pred ccCCCCCccc-CCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCC-ccCcchhccCCCCCCEE
Q 026180 3 DVNANNLTYL-QDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSF-VGEIPTSIANLKGLRTL 80 (242)
Q Consensus 3 dLs~N~i~~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~~~p~~~~~l~~L~~L 80 (242)
++++|++..+ +...|. .+.+++.++++.|.+.......+. .++.++.|+|++|.+ .+..|..|..+++|++|
T Consensus 426 ~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~----~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp ECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTT----TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred hhhhccccccccccccc--cccccccccccccccccccccccc----cchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 4454544333 334455 677888888888888776655443 478999999999975 44678889999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-C-CCcCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-F-NTFGKGSFDGNPG 158 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~-~~~~~~~~~~n~~ 158 (242)
+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.... + .++..+.+++||+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 9999999999999999999999999999999988889999999999999999999988887643 2 4677889999999
Q ss_pred CCCCCC
Q 026180 159 LCGQPL 164 (242)
Q Consensus 159 ~c~~~~ 164 (242)
.|+|..
T Consensus 580 ~C~C~~ 585 (635)
T 4g8a_A 580 ACTCEH 585 (635)
T ss_dssp CCSGGG
T ss_pred cccCCc
Confidence 999964
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.3e-17 Score=146.34 Aligned_cols=140 Identities=22% Similarity=0.143 Sum_probs=120.5
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
..++|++|++++|.+.......+ ..+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++
T Consensus 273 ~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALLKSVF----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TTSCCCEEECCSSCCCEECTTTT----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccCceEEEecCccccccchhhc----ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 44689999999998886644433 34789999999999999888889999999999999999999888889999999
Q ss_pred CCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCCCCCC
Q 026180 101 LESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 101 L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~~ 164 (242)
|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999888999999999999999999999655443 3466788889999999999873
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-17 Score=128.98 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=105.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|+++.+|... .++|++|++++|.+.......+ ..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 12 l~~~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGI-----PSSATRLELESNKLQSLPHGVF----DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp EECCSSCCSSCCTTC-----CTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCCCccCCCCC-----CCCCcEEEeCCCcccEeCHHHh----cCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 578899999998654 3588999999888875544333 3478899999999999877777788899999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999997777778888999999999999986666667888999999999999887665
No 34
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=7.3e-18 Score=132.04 Aligned_cols=131 Identities=23% Similarity=0.319 Sum_probs=112.4
Q ss_pred cccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEe
Q 026180 26 TYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLD 105 (242)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 105 (242)
+.+++++|.+..++... +..++.|+|++|.|+ .+|..|..+++|++|++++|.|++..+..|..+++|+.|+
T Consensus 13 ~~l~~~~~~l~~ip~~~-------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC-------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC-------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 46677777776555432 468999999999999 7889999999999999999999988888999999999999
Q ss_pred CCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180 106 LSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 106 l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~ 164 (242)
|++|++++..|..|..+++|+.|++++|.++...+... .+..+..+.+.+||+.|+|..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999998888899999999999999999996544332 466788889999999999854
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=6.2e-18 Score=132.25 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=114.5
Q ss_pred cccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180 26 TYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104 (242)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 104 (242)
+.+++++|.++.++... ...++.|++++|.|++..+. .|..+++|++|+|++|++++..|..|..+++|+.|
T Consensus 11 ~~l~~s~~~l~~ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-------PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCC-------CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCC-------CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67788888776555433 34899999999999976664 48999999999999999998989999999999999
Q ss_pred eCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 105 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c~~~~ 164 (242)
++++|++++..|..|..+++|+.|++++|++++..|... .+..+..+.+.+|++.|+|+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999999998888889999999999999999998888654 456778889999999998864
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=152.88 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=131.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|.+..++.. |. .+++|++|++++|.+...... ..+..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus 378 L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 378 LDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp EECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTS---CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred EECCCCcccccccc-cc--ccCCCCEEEccCCccccccch---hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 56777777777766 55 778888888888887754321 1223478999999999999988999999999999999
Q ss_pred ccCCCCC-CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCC
Q 026180 82 LSTNSLQ-GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGL 159 (242)
Q Consensus 82 L~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~ 159 (242)
+++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|.. ..+..+..+.+.+|++.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999997 578889999999999999999999888999999999999999999999776654 34667788899999999
Q ss_pred CCCCC
Q 026180 160 CGQPL 164 (242)
Q Consensus 160 c~~~~ 164 (242)
|+|+.
T Consensus 532 ~~~~~ 536 (570)
T 2z63_A 532 CSCPR 536 (570)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 98875
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=7.7e-18 Score=138.62 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=72.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+.......+. .+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 57 L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 57 LDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp EECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred EECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhc----CCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 45555555555555554 455555555555555444322222 245555555555555544444455555555555
Q ss_pred ccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc----EEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180 82 LSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE----VFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156 (242)
Q Consensus 82 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~----~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 156 (242)
+++|.+++. +|..+..+++|+.|++++|++++..+..+..+.+|+ .+++++|.+++..+.......+..+.+.+|
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence 555555532 355555555555555555555544444444333333 455555555543333322223444444444
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=2.2e-18 Score=144.70 Aligned_cols=149 Identities=23% Similarity=0.351 Sum_probs=108.0
Q ss_pred cccCC-CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNA-NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~-N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+||++ |++....+..|. .+++|++|++++|.+....... +..+++|+.|+|++|.+++..|..+..+++|++|
T Consensus 81 L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp EEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred eeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 57774 777754445566 7888888888888887332222 2347788888888888888888888888888888
Q ss_pred eccCCCCCCCCCcccCCCC-CCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLI-VLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP 157 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~ 157 (242)
++++|++++.+|..+..++ +|+.|++++|++++..|..+..+. |+.|++++|.+++..|... .+..+..+.+.+|.
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 8888888888888888877 888888888888877777777766 7777777777776655432 33445555555553
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.3e-17 Score=146.30 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=122.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|..++...|. .+++|++|++++|.+.......+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 280 L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFW----GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp EECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred EEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhc----CcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 68999999999888888 899999999999999876554443 388999999999999988899999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9999999888999999999999999999999877777899999999999999999999854
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=143.06 Aligned_cols=148 Identities=18% Similarity=0.144 Sum_probs=126.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+|+++|+++.+|...+ ..++.|++++|.|+......+. ..+++|+.|+|++|+|++..+..|..+++|++|+
T Consensus 23 l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp EECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 6899999999998653 3689999999999987765543 1378999999999999988888999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-----CCCCcCCccccCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-----QFNTFGKGSFDGN 156 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-----~~~~~~~~~~~~n 156 (242)
|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++ +|... .+..+..+++.+|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence 99999998878889999999999999999998889999999999999999999995 44332 3556667777777
Q ss_pred CC
Q 026180 157 PG 158 (242)
Q Consensus 157 ~~ 158 (242)
..
T Consensus 174 ~l 175 (361)
T 2xot_A 174 KL 175 (361)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.5e-17 Score=152.99 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcc--------hhccCCCCCCEEeccCCCCCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIP--------TSIANLKGLRTLNLSTNSLQGHIP 92 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p--------~~~~~l~~L~~L~L~~n~l~~~~p 92 (242)
.+++|++|++++|.|..+....+ ..+++|+.|+|++|.+++..+ ..|..+++|+.|++++|+++...+
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCCCEEECCCCCCCcCChhhh----ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 45566666666666554433322 236667777777777764322 125667777777777777774444
Q ss_pred cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC--CCCCcCCccccCCCCCCCCCC
Q 026180 93 PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK--QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 93 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~~ 164 (242)
..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|... .+..+..+.+.+||+.|+|+.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 467788888888888888886666667788888888888888886555432 356677888999999999975
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=143.57 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=111.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.|..+....+ ..+++|+.|+|++|.++...+..|..+++|++|+
T Consensus 69 L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp EECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGG----TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred EEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhc----cCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 68999999999988888 89999999999998887664444 3478899999999999977777888999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCC-CCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 156 (242)
+++|.++...+..|..+++|+.|++++| .+....+..|..+++|+.|++++|.++ .+|....+..+..+.+.+|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTS
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCC
Confidence 9999998666667777788888888774 444333445677777777777777776 4454444445555555555
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=1.3e-17 Score=155.70 Aligned_cols=156 Identities=28% Similarity=0.341 Sum_probs=104.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+++...+..|. .+++|++|++++|.+..... .....+++|+.|++++|.+++..|..+..+++|++|+
T Consensus 399 L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp EECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred EECCCCccccccCHHHh--cCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 34555555543334444 56666666666666653221 1223366777777777777777777777777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~~c 160 (242)
+++|++++.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++|.++|.+|... .+..+..+++.+|+..+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 77777777777777777777777777777777777777777777888888887777777553 34556666777776655
Q ss_pred CCC
Q 026180 161 GQP 163 (242)
Q Consensus 161 ~~~ 163 (242)
..|
T Consensus 553 ~ip 555 (768)
T 3rgz_A 553 TIP 555 (768)
T ss_dssp BCC
T ss_pred cCC
Confidence 443
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=7e-18 Score=153.16 Aligned_cols=160 Identities=18% Similarity=0.200 Sum_probs=95.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCc-hh--------------------hHHHhhcCccEEEccC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGT-EL--------------------EYEKLSNLITAIILSN 60 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~--------------------~~~~~~~~L~~L~Ls~ 60 (242)
++|++|++..++...|. .+++|++|++++|.+....... +. .....+++|+.|++++
T Consensus 381 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp EECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred EECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 56777777777766666 6677777777777666432111 11 1112244555555555
Q ss_pred CCCccC---cchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 61 NSFVGE---IPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 61 n~i~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..++.| .|++++|.+++
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 555431 22345555666666666666665556666666666666666666666666666666666 66666666665
Q ss_pred CCCCCC-CCCCcCCccccCCCCCCCCCC
Q 026180 138 PIPRGK-QFNTFGKGSFDGNPGLCGQPL 164 (242)
Q Consensus 138 ~~p~~~-~~~~~~~~~~~~n~~~c~~~~ 164 (242)
..|... .+..+..+.+.+||+.|+|+.
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 544331 234556677888888887753
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3.9e-17 Score=143.63 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=108.2
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++||++|+|+.++...|. .+++|++|++++|.|..+....+. .+++|+.|+|++|.+++..+..|..+++|++|
T Consensus 79 ~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 79 YLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp EEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred EEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhcc----CcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 368899999999888888 889999999999988877655443 37889999999999987777778889999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSN-NKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGN 156 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n 156 (242)
++++|.++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++ +|....+..+..+.+.+|
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCC
Confidence 9999998866666677777777777777 34443333356667777777777777663 344333444444444444
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=146.85 Aligned_cols=160 Identities=20% Similarity=0.182 Sum_probs=117.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhH--------------------HHhhcCccEEEccCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEY--------------------EKLSNLITAIILSNN 61 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--------------------~~~~~~L~~L~Ls~n 61 (242)
++|++|+++.++...|. .+++|+.|++++|.+.......+... .....+|+.|+|++|
T Consensus 157 L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp EEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred EECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 45555555555554444 45555555555554444332211110 001237888899999
Q ss_pred CCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCC
Q 026180 62 SFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 62 ~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..+.
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 99965557889999999999999999988888899999999999999999988899999999999999999999965443
Q ss_pred C-CCCCCcCCccccCCCCCCCCC
Q 026180 142 G-KQFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 142 ~-~~~~~~~~~~~~~n~~~c~~~ 163 (242)
. ..+..+..+.+.+||+.|+|.
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGG
T ss_pred HcCCCcccCEEEccCCCccCccc
Confidence 3 235667788899999999875
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=9.3e-18 Score=135.36 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=123.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccC-CCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSN-NSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~ 79 (242)
++|++|+|+.++...|. .+++|++|++++|. ++.+....+.. +++|+.|++++ |.+++..+..|..+++|++
T Consensus 36 L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~----l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYN----LSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp EEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEES----CTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred EEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCC----CcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 68999999999999998 89999999999996 88776655433 78999999998 9999777788999999999
Q ss_pred EeccCCCCCCCCCcccCCCCCCC---EEeCCCC-CCCCCCcccccCCCccc-EEecCCCccccCCCCCC-CCCCcCCccc
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLE---SLDLSNN-KLSGQIPQQLGELTTLE-VFDVSDNLLTGPIPRGK-QFNTFGKGSF 153 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~-~~~~~~~~~~ 153 (242)
|++++|.+++ +|+ +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|.++ .+|... ....+..+.+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 9999999995 666 88888888 9999999 99877777799999999 9999999998 555432 2245666677
Q ss_pred cCCC
Q 026180 154 DGNP 157 (242)
Q Consensus 154 ~~n~ 157 (242)
.+|+
T Consensus 187 ~~n~ 190 (239)
T 2xwt_C 187 NKNK 190 (239)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 7775
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-17 Score=130.61 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=117.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|+|++++. +. .+++|++|++++|.+.... ....+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 49 L~l~~n~i~~l~~--l~--~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 49 ITLANINVTDLTG--IE--YAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp EEEESSCCSCCTT--GG--GCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred EeccCCCccChHH--Hh--cCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 6889999999883 45 7889999999998554322 234478999999999999987888899999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNK-LSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|+.|++++|.+++ ++....+..+..+.+.+|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 99999998788889999999999999998 66 556 68899999999999999985 4444456667777787775
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=1.8e-17 Score=140.06 Aligned_cols=147 Identities=19% Similarity=0.286 Sum_probs=98.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.+|...+ .+++|++|++++|.+..++... ..+++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus 86 L~L~~n~l~~lp~~l~---~l~~L~~L~L~~n~l~~lp~~~-----~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAF---RLSHLQHMTIDAAGLMELPDTM-----QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp EEEESSCCSSCCSCGG---GGTTCSEEEEESSCCCCCCSCG-----GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred EEccCCCchhcChhhh---hCCCCCEEECCCCCccchhHHH-----hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 5778888888876533 4778888888887776433222 33677788888888777 6677777777777777
Q ss_pred ccCCCCCCCCCcccCC---------CCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCcc
Q 026180 82 LSTNSLQGHIPPTLGN---------LIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGS 152 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~---------l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~ 152 (242)
+++|++.+.+|..+.. +++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+....+..+..+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 7777776677765543 677777777777776 566667777777777777777764333222344555555
Q ss_pred ccCCCC
Q 026180 153 FDGNPG 158 (242)
Q Consensus 153 ~~~n~~ 158 (242)
+.+|..
T Consensus 236 Ls~n~~ 241 (328)
T 4fcg_A 236 LRGCTA 241 (328)
T ss_dssp CTTCTT
T ss_pred CcCCcc
Confidence 665543
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=5.2e-17 Score=147.42 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=117.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+..+....+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 37 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp EECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred EECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhh----chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 68999999999998888 899999999999988876554443 388999999999999988899999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+++|.+++..+..++.+++|+.|++++|.+++ .+|..+..+++|++|++++|.+++..|..
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 99999997777889999999999999999986 56889999999999999999998766653
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=148.22 Aligned_cols=155 Identities=23% Similarity=0.223 Sum_probs=124.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L 80 (242)
+||++|+|+......|. .+++|++|++++|.++..+. .+..+..+++|+.|++++|.+++.+|. .+..+++|++|
T Consensus 358 L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFK--VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp EECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTH--HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred EECCCCccccchhhhhc--ccCCCCEEECCCCCcCCccc--chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 68899999886666776 88999999999988774321 111234578899999999999974554 57889999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNPG 158 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~~ 158 (242)
++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. ..+..+..+.+.+||+
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 9999999877776654 78999999999999 67777779999999999999999 56654 3466778888999999
Q ss_pred CCCCCC
Q 026180 159 LCGQPL 164 (242)
Q Consensus 159 ~c~~~~ 164 (242)
.|+|+.
T Consensus 510 ~c~c~~ 515 (562)
T 3a79_B 510 DCTCPG 515 (562)
T ss_dssp CCCHHH
T ss_pred CCCcch
Confidence 998854
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.7e-17 Score=138.52 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=101.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|..++.. |. .+++|++|++++|.+...... ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 83 L~Ls~n~i~~l~~~-~~--~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 83 LDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp EECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred EECCCCccccChhh-cC--CCCCCCEEECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 45666666666553 33 566777777777766654320 1122366777777777777777777777777788888
Q ss_pred ccCCCCCC-CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCC
Q 026180 82 LSTNSLQG-HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 158 (242)
+++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|..
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 88877765 46677777778888888888877666777777778888888888777544422 2344556666666643
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=2.1e-17 Score=151.35 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=104.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH---HhhcCccEEEccCCCCccCcchhcc--CCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE---KLSNLITAIILSNNSFVGEIPTSIA--NLKG 76 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~~~~L~~L~Ls~n~i~~~~p~~~~--~l~~ 76 (242)
++|++|+|+.+|...|. .+++|++|++++|.+..++...+.... ..+++|+.|+|++|.++ .+|..+. .+++
T Consensus 438 L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 438 INLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred EECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 56677777777666655 566777777777777654444332210 11226777777777777 5666665 7777
Q ss_pred CCEEeccCCCCCCCCCcccCCCCCCCEEeC------CCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCC
Q 026180 77 LRTLNLSTNSLQGHIPPTLGNLIVLESLDL------SNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGK 150 (242)
Q Consensus 77 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~ 150 (242)
|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|.+ +.+|.... ..+..
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~ 591 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISV 591 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCE
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCE
Confidence 8888888888775 6777777778888877 45667777777777777888888888877 46666543 56667
Q ss_pred ccccCCCCCC
Q 026180 151 GSFDGNPGLC 160 (242)
Q Consensus 151 ~~~~~n~~~c 160 (242)
+.+.+|+..|
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 7777777665
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=146.42 Aligned_cols=155 Identities=26% Similarity=0.285 Sum_probs=125.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch-hccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT-SIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~-~~~~l~~L~~L 80 (242)
+||++|+|+......+. .+++|++|++++|.+...+. .+.....+++|+.|++++|.+++.+|. .+..+++|++|
T Consensus 329 L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~--~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSK--IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp EECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHH--HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred EEeECCccChhhhhhhc--cCCCCCEEEccCCccCcccc--chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 68899999886556666 88899999999988864321 112245578999999999999975665 47889999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNPG 158 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~~ 158 (242)
++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. ..+..+..+.+.+|++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 9999999888877664 79999999999999 77887889999999999999999 56654 2456778888999999
Q ss_pred CCCCCC
Q 026180 159 LCGQPL 164 (242)
Q Consensus 159 ~c~~~~ 164 (242)
.|+|+.
T Consensus 481 ~c~c~~ 486 (520)
T 2z7x_B 481 DCSCPR 486 (520)
T ss_dssp CCCHHH
T ss_pred cccCCc
Confidence 998854
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.1e-18 Score=145.18 Aligned_cols=155 Identities=16% Similarity=0.221 Sum_probs=93.0
Q ss_pred cccCCCCCcccCC-CCCCCCCCCCCcccceeee-EEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQD-PLLGPVRYPALTYYGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
+||++|+|+.++. ..|. .+++|++|++++| .+.......+ ..+++|+.|++++|.+++..|..+..+++|++
T Consensus 129 L~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDF----AGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp EECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred EECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHHc----cCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 4555555555555 4444 5555555555554 2333322222 22455566666666666555555666666666
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-------------------------------CcccccCCCcccEE
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-------------------------------IPQQLGELTTLEVF 128 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-------------------------------~p~~~~~l~~L~~L 128 (242)
|++++|.+....+..+..+++|+.|++++|.+++. +|..+..+++|+.|
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 66666665522222233456677777777777653 23345678889999
Q ss_pred ecCCCccccCCCCCC--CCCCcCCccccCCCCCCCCC
Q 026180 129 DVSDNLLTGPIPRGK--QFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 129 ~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~ 163 (242)
++++|.++ .+|... .+..+..+.+.+|++.|+|+
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999988 566543 46677788899999988875
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=145.12 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=94.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.|.......+. .+++|+.|+|++|.++...+..|..+++|++|+
T Consensus 37 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp EECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred EECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 67888888888777777 778888888888877766444333 367777777777777755555677777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
+++|.+.+..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 77777776667777777777777777777776666667777777777777776664
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=139.97 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=99.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+.......+. .+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 57 L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp EECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred EECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcC----CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 57788888888877777 778888888888877765544332 367788888888888865555577888888888
Q ss_pred ccCCCCCCCCC-cccCCCCCCCEEeCCCC-CCCCCCcccccCCCcccEEecCCCccccCCCCC
Q 026180 82 LSTNSLQGHIP-PTLGNLIVLESLDLSNN-KLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 82 L~~n~l~~~~p-~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+++|.+++..+ ..+..+++|+.|++++| .+++..|..+..+++|+.|++++|.+++..|..
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 88888874333 36777888888888887 466555667777888888888888887665544
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.3e-17 Score=145.63 Aligned_cols=110 Identities=21% Similarity=0.165 Sum_probs=75.7
Q ss_pred hhcCccEEEccCCCCccCcchhcc-CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccE
Q 026180 49 LSNLITAIILSNNSFVGEIPTSIA-NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEV 127 (242)
Q Consensus 49 ~~~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~ 127 (242)
.+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++. |. ...+++|+.|++++|.+++.. ..+..+++|+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~ 218 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTW 218 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccE
Confidence 355666666666666665665554 566677777777766644 22 334778888888888888544 44778888888
Q ss_pred EecCCCccccCCCCC-CCCCCcCCccccCCCCCCCC
Q 026180 128 FDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQ 162 (242)
Q Consensus 128 L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~ 162 (242)
|++++|.+++ +|.. ..+..+..+.+.+|++.|++
T Consensus 219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 8888888886 4443 34566777888999988764
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.7e-17 Score=139.19 Aligned_cols=151 Identities=24% Similarity=0.215 Sum_probs=89.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc---CcchhccCCCCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG---EIPTSIANLKGLR 78 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---~~p~~~~~l~~L~ 78 (242)
+||++|+|+.++...|. .+++|++|++++|.+...........+..+++|+.|+|++|.+++ .....+..+++|+
T Consensus 154 L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp EEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred EEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 56666666666666666 666777777766653210000000001335667777777777762 1123344667777
Q ss_pred EEeccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 79 TLNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 79 ~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+|++++|++++..| ..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |....+..+..+.+.+|+
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 77777777776554 34555677777777777777 5565554 6777777777777754 544445555666666665
Q ss_pred C
Q 026180 158 G 158 (242)
Q Consensus 158 ~ 158 (242)
.
T Consensus 308 l 308 (312)
T 1wwl_A 308 F 308 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=1e-16 Score=135.53 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=115.8
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEE-eecCCchh----hHHHhhcCccEEEccCCCCccCcchhccCCC
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLT-LSNKGTEL----EYEKLSNLITAIILSNNSFVGEIPTSIANLK 75 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~----~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~ 75 (242)
++||++|+|+.+|.. |. .+++|++|++++|.+. ..+..... ..+..+++|+.|+|++|.++ .+|..+..++
T Consensus 131 ~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 131 TLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp EEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred EEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 368999999988764 55 7889999999886432 22221110 00122678888888888888 7788888888
Q ss_pred CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCcccc
Q 026180 76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFD 154 (242)
Q Consensus 76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~ 154 (242)
+|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|... .+..+..+.+.
T Consensus 207 ~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 8888888888888 466678888888888888888888888888888888888888888888888653 45566677777
Q ss_pred CCCCCCC
Q 026180 155 GNPGLCG 161 (242)
Q Consensus 155 ~n~~~c~ 161 (242)
+|+....
T Consensus 286 ~n~~~~~ 292 (328)
T 4fcg_A 286 GCVNLSR 292 (328)
T ss_dssp TCTTCCC
T ss_pred CCCchhh
Confidence 7765443
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=1.5e-16 Score=134.20 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=92.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|+|+.++...|. .+++|++|++++|.+.... .....+..+++|+.|++++|.++ .+|..+. ++|++|+
T Consensus 126 L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 126 LRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH 198 (330)
T ss_dssp EECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred EECCCCcccccCHhHhc--CCccccEEECCCCcCCccC--cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence 57888888888877776 7778888888877765311 11122233666777777777766 3444332 5666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP 157 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~ 157 (242)
+++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|... ....+..+.+.+|+
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 6666666666666666666666666666666555556666666666666666666 444332 33445555555554
No 62
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=3.8e-16 Score=119.74 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=81.2
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
++.++.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35678999999999988888999999999999999999977777789999999999999999977777799999999999
Q ss_pred cCCCccccCCCC
Q 026180 130 VSDNLLTGPIPR 141 (242)
Q Consensus 130 l~~N~l~~~~p~ 141 (242)
+++|++++..+.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999877653
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=5.2e-17 Score=140.06 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=100.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.++.+|...|. .+++|++|++++|.+.......+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 50 l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp EEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhcc----CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56778888888877776 778888888888877766544433 377888888888888877777788888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 138 (242)
+++|.++...+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 888888844444467788888888888888877777788888888888888887743
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=144.28 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=117.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+..+....+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 33 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp EECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred EEccCCccCccChhHhh--CCCCceEEECCCCcCCccCccccc----CchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 68999999999998888 899999999999988877655443 388999999999999988888999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
+++|.+++..+..++.+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++..|.
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 99999996666679999999999999999986 3689999999999999999999865554
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=8.3e-17 Score=122.85 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=76.6
Q ss_pred cccCCCCCc--ccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLT--YLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~--~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
++|++|+|+ .+|.. +. .+++|++|++++|.|... ..+ ..+++|+.|++++|.+++..|..+..+++|++
T Consensus 29 L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 29 LVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNL----PKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp EECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSC----CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred EECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhh----ccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466666666 56543 33 566666676666666544 111 22566666777777666556666666666777
Q ss_pred EeccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEecCCCccc
Q 026180 80 LNLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 80 L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~ 136 (242)
|++++|.+++... ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777776663321 456666666777777766664433 35666666666666666655
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=7.7e-17 Score=146.31 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=106.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.+++..|. .+++|++|++++|.+..+....+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 38 L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQ----SQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp EECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTTT----TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred EEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhcc----CccccCeeeCCCCcccccChhhhcccccccEee
Confidence 68889999888888888 888899999988888766544443 378888888888888877888888888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
+++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 88888886667778888888888888888886443444458888888888888876544
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=138.90 Aligned_cols=150 Identities=24% Similarity=0.242 Sum_probs=69.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcch----hccCCCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPT----SIANLKGL 77 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~----~~~~l~~L 77 (242)
++|++|+|..++...|. .+++|++|++++|.+..............+++|+.|+|++|+++ .++. .+..+++|
T Consensus 150 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L 226 (310)
T 4glp_A 150 LSIAQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQP 226 (310)
T ss_dssp EEEECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCC
T ss_pred EEeeCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCC
Confidence 34555555555555554 45555555555554321000000000112445555555555554 2222 13445555
Q ss_pred CEEeccCCCCCCCCCcccCCC---CCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCcccc
Q 026180 78 RTLNLSTNSLQGHIPPTLGNL---IVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFD 154 (242)
Q Consensus 78 ~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~ 154 (242)
++|++++|++++..|..+..+ ++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |....+..+..+.+.
T Consensus 227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLD 302 (310)
T ss_dssp SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECS
T ss_pred CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECc
Confidence 555555555555445444443 45555555555555 3444332 4555555555555532 222233444455555
Q ss_pred CCCC
Q 026180 155 GNPG 158 (242)
Q Consensus 155 ~n~~ 158 (242)
+|+.
T Consensus 303 ~N~l 306 (310)
T 4glp_A 303 GNPF 306 (310)
T ss_dssp STTT
T ss_pred CCCC
Confidence 5543
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=9.5e-17 Score=147.65 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=99.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+..... ..+..+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 30 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp EECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCT----THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred EECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCH----HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 56777777777776666 67777777777776654332 2234467777777777777755455677777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC---CCCCcCCccccCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK---QFNTFGKGSFDGN 156 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~~~~~~~~n 156 (242)
+++|++++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+... ....+..+.+.+|
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 77777776666667777777777777777777667777777777777777777765544321 1234445555555
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=2.6e-16 Score=135.63 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=47.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+.......+ ..+++|+.|+|++|.++...+..|..+++|++|+
T Consensus 74 L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp EECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHh----cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 34555555555554444 45555555555554443322221 1244444444444444432222334444444444
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+++|.+++..|..+..+++|+.|++++|+++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 4444444444444444444444444444443
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=1e-16 Score=135.33 Aligned_cols=82 Identities=23% Similarity=0.243 Sum_probs=41.6
Q ss_pred CCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccc
Q 026180 75 KGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSF 153 (242)
Q Consensus 75 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~ 153 (242)
++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|... .+..+..+.+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 34555555555555444455555555555555555555444445555555555555555555 333321 2333444444
Q ss_pred cCCC
Q 026180 154 DGNP 157 (242)
Q Consensus 154 ~~n~ 157 (242)
.+|.
T Consensus 272 ~~N~ 275 (332)
T 2ft3_A 272 HTNN 275 (332)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=9e-17 Score=146.11 Aligned_cols=131 Identities=19% Similarity=0.183 Sum_probs=105.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.+..+|...|. .+++|++|++++|.|.......+. .+++|+.|+|++|.+++..|..|+.+++|++|+
T Consensus 56 l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp EEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788888888887777 788888888888888766544443 377888888888888877777888888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 138 (242)
|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 888888855555578888888888888888887777888888888888888888754
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.6e-16 Score=143.09 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=41.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|.|+.++...|. .+++|++|++++|.|..++...+ ..+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 104 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIF----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp EECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred EECCCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHh----ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 34555555555554444 45555555555554443332222 2245555555555555555555555555555555
Q ss_pred ccCCCCC
Q 026180 82 LSTNSLQ 88 (242)
Q Consensus 82 L~~n~l~ 88 (242)
+++|.++
T Consensus 178 L~~N~l~ 184 (597)
T 3oja_B 178 LSSNRLT 184 (597)
T ss_dssp CTTSCCS
T ss_pred CcCCCCC
Confidence 5555554
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=1.1e-16 Score=143.64 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=101.6
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++...|. .+++|++|++++|.+.......+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 31 L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp EECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred EECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 67888888888777777 778888888888877766544333 377888888888888877777788888888888
Q ss_pred ccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCCC
Q 026180 82 LSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 82 L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+++|.+++. .|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+++..|..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 888888753 45677888888888888887443444 56788888888888888888766654
No 74
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.6e-16 Score=118.50 Aligned_cols=132 Identities=23% Similarity=0.186 Sum_probs=109.4
Q ss_pred CcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEE
Q 026180 25 LTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESL 104 (242)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 104 (242)
.+.++++++.+..++. ..++.|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus 9 ~~~l~~~~~~l~~~p~-------~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCT-------TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCC-------CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 3556666666554432 235789999999999997777788999999999999999997777778999999999
Q ss_pred eCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180 105 DLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 105 ~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 163 (242)
++++|.+++..+..+..+++|+.|++++|.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999877777899999999999999999655443 246678888999999998775
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=8.9e-17 Score=135.06 Aligned_cols=148 Identities=19% Similarity=0.141 Sum_probs=110.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhcc-CCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIA-NLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L 80 (242)
+++++|+|+.++.. .+++|++|++++|.+.......+ ..+++|+.|+|++|.+++..+..+. .+++|++|
T Consensus 104 L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 104 LHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp EECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCT----GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhh----hccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 46666766666644 35578888888887775443333 3478899999999999877777664 78899999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccCCCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDGNPGL 159 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~ 159 (242)
++++|.+++. +. ...+++|+.|++++|++++. |..+..+++|+.|++++|.++. +|.. ..+..+..+.+.+|++.
T Consensus 175 ~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 9999999855 33 34588999999999999854 5558888999999999999985 4543 34567778888999988
Q ss_pred CCC
Q 026180 160 CGQ 162 (242)
Q Consensus 160 c~~ 162 (242)
|++
T Consensus 251 ~~~ 253 (317)
T 3o53_A 251 CGT 253 (317)
T ss_dssp HHH
T ss_pred CcC
Confidence 754
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=147.90 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=118.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
+||++|+|+.++...|. .+++|++|++++|. +..+....+ ..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus 29 LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp EEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred EECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 68999999999888888 88999999998873 333322323 347889999999999998889999999999999
Q ss_pred eccCCCCCCCCCcc--cCCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCCCCC-C--CCcCCcccc
Q 026180 81 NLSTNSLQGHIPPT--LGNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPRGKQ-F--NTFGKGSFD 154 (242)
Q Consensus 81 ~L~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~--~~~~~~~~~ 154 (242)
+|++|.+++..|.. +..+++|+.|++++|.+++..+ ..|..+++|+.|++++|.+++..|.... + ..+..+.+.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999998766665 8899999999999999987655 5789999999999999999877665431 1 345555555
Q ss_pred CCC
Q 026180 155 GNP 157 (242)
Q Consensus 155 ~n~ 157 (242)
+|.
T Consensus 183 ~n~ 185 (844)
T 3j0a_A 183 ANS 185 (844)
T ss_dssp CSB
T ss_pred CCc
Confidence 553
No 77
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=1.2e-15 Score=117.43 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=78.8
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+..|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 35688999999999988888999999999999999999976666678999999999999999976666688999999999
Q ss_pred cCCCccccCCC
Q 026180 130 VSDNLLTGPIP 140 (242)
Q Consensus 130 l~~N~l~~~~p 140 (242)
+++|++.+..+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999986554
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.7e-16 Score=148.14 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=45.3
Q ss_pred CccEEEccCCCCccCcchhcc--CCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCC------CCCCCCCcccccCCC
Q 026180 52 LITAIILSNNSFVGEIPTSIA--NLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN------NKLSGQIPQQLGELT 123 (242)
Q Consensus 52 ~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~~l~ 123 (242)
+|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..+..++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 4444444444444 3444443 44444444444444443 344444444444444433 344444444444444
Q ss_pred cccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 124 TLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 124 ~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+|+.|++++|.+ +.+|.... ..+..+++.+|+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCT
T ss_pred CCCEEECCCCCC-CccCHhhc-CCCCEEECCCCC
Confidence 444444444444 34444321 233344444443
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=9e-17 Score=134.74 Aligned_cols=154 Identities=17% Similarity=0.126 Sum_probs=111.5
Q ss_pred cccCCCCCc-ccCCCCC-CCCCCCCCcccceeeeEEEeecCCchhhH-HHhhcCccEEEccCCCCccCcchhccCCCCCC
Q 026180 2 KDVNANNLT-YLQDPLL-GPVRYPALTYYGFSYYSLTLSNKGTELEY-EKLSNLITAIILSNNSFVGEIPTSIANLKGLR 78 (242)
Q Consensus 2 ~dLs~N~i~-~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 78 (242)
+||++|+|+ .+|...| . .+++|++|++++|.+...+ ..+... ...+++|+.|+|++|.+++..|..|..+++|+
T Consensus 100 L~L~~n~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEA--TGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSC--CSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred EEccCCcccchhHHHHHHh--cCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 678899988 4666554 4 7889999999998887542 111110 00127899999999999988888899999999
Q ss_pred EEeccCCCCCCC--CCccc--CCCCCCCEEeCCCCCCCCC--Cc-ccccCCCcccEEecCCCccccCCCCC--CCCCCcC
Q 026180 79 TLNLSTNSLQGH--IPPTL--GNLIVLESLDLSNNKLSGQ--IP-QQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFG 149 (242)
Q Consensus 79 ~L~L~~n~l~~~--~p~~~--~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~ 149 (242)
+|++++|++.+. .|..+ ..+++|+.|++++|++++. ++ ..+..+++|+.|++++|.+++..|.. .....+.
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 999999998765 23334 7888999999999998832 12 33457788999999999998766432 2345667
Q ss_pred CccccCCCC
Q 026180 150 KGSFDGNPG 158 (242)
Q Consensus 150 ~~~~~~n~~ 158 (242)
.+.+++|..
T Consensus 257 ~L~Ls~N~l 265 (312)
T 1wwl_A 257 SLNLSFTGL 265 (312)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcc
Confidence 777777754
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.5e-16 Score=126.90 Aligned_cols=148 Identities=15% Similarity=0.071 Sum_probs=119.2
Q ss_pred cccCCCC-CcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCC-
Q 026180 2 KDVNANN-LTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLR- 78 (242)
Q Consensus 2 ~dLs~N~-i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~- 78 (242)
+||++|+ |+.++...|. .+++|++|++++ |.+..+....+.. +++|+.|++++|.+++ +|. |..+++|+
T Consensus 60 L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~----l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKE----LPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp EEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEEC----CTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred EeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCC----CCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 6899997 9999999998 899999999998 9998776555433 7889999999999995 666 88888888
Q ss_pred --EEeccCC-CCCCCCCcccCCCCCCC-EEeCCCCCCCCCCcccccCCCcccEEecCCCc-cccCCCCCC-CC-CCcCCc
Q 026180 79 --TLNLSTN-SLQGHIPPTLGNLIVLE-SLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL-LTGPIPRGK-QF-NTFGKG 151 (242)
Q Consensus 79 --~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~-~~-~~~~~~ 151 (242)
+|++++| .+++..+..|..+++|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+... .. ..+..+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 9999999 99977777899999999 9999999998443334444 899999999995 885444432 34 567777
Q ss_pred cccCCCC
Q 026180 152 SFDGNPG 158 (242)
Q Consensus 152 ~~~~n~~ 158 (242)
.+.+|..
T Consensus 211 ~l~~N~l 217 (239)
T 2xwt_C 211 DVSQTSV 217 (239)
T ss_dssp ECTTCCC
T ss_pred ECCCCcc
Confidence 7877754
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=8.5e-16 Score=129.51 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=108.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc--CcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG--EIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~ 79 (242)
+||++|+|+++|...+ ++|++|++++|.+.... ...+..+++|+.|++++|.++. ..+..+..+++|++
T Consensus 105 L~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP-----KTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp EECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred EECCCCcCCccChhhc-----ccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 6788888888887653 57888888888776433 2333457888888888888853 66777888888888
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCCC
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNPG 158 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~~ 158 (242)
|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+... .+..+..+.+.+|..
T Consensus 176 L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 888888888 5565443 788888888888887777888888888888888888886655432 345566666777643
No 82
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.9e-16 Score=118.40 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCcccceeeeEEE--eecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCC
Q 026180 23 PALTYYGFSYYSLT--LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIV 100 (242)
Q Consensus 23 ~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 100 (242)
++|+.|++++|.+. ..+.. ...+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHH-----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45555555555544 22211 11245555566665555543 44555555666666666655445555555555
Q ss_pred CCEEeCCCCCCCCC-CcccccCCCcccEEecCCCcccc
Q 026180 101 LESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 101 L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
|+.|++++|.+++. .+..+..+++|+.|++++|.+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 66666666655542 22445555556666666655554
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=140.50 Aligned_cols=144 Identities=19% Similarity=0.131 Sum_probs=117.1
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++|+++|+|+.+|...+ ++|++|++++|.+.... ...+..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus 4 ~l~ls~n~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-----QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EEECTTSCCSSCCCSCC-----TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred eEecCCCCccccccccc-----ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 37999999999998653 69999999999887443 2334558899999999999998889999999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC-CCcccccCCCcccEEecCCCccccCCCCCCCCCCc--CCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG-QIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTF--GKGSFDGNP 157 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--~~~~~~~n~ 157 (242)
++++|+++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++.. ...+..+ ..+.+.+|.
T Consensus 75 ~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 75 DLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG--GGGGTTSCEEEEEEEECT
T ss_pred ecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh--ccccccceeeEEEeeccc
Confidence 99999999 66765 89999999999999997 47899999999999999999987521 1122333 445555554
Q ss_pred C
Q 026180 158 G 158 (242)
Q Consensus 158 ~ 158 (242)
.
T Consensus 150 l 150 (520)
T 2z7x_B 150 T 150 (520)
T ss_dssp T
T ss_pred c
Confidence 3
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=130.04 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=116.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|++.......+....+++|++|++++|.+..............+++|+.|+|++|.+++..+..|..+++|++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 68999999877666651128999999999999887422222212223478999999999999988889999999999999
Q ss_pred ccCCCCCCC--C--CcccCCCCCCCEEeCCCCCCCCCCcc----cccCCCcccEEecCCCccccCCCCCC-CC---CCcC
Q 026180 82 LSTNSLQGH--I--PPTLGNLIVLESLDLSNNKLSGQIPQ----QLGELTTLEVFDVSDNLLTGPIPRGK-QF---NTFG 149 (242)
Q Consensus 82 L~~n~l~~~--~--p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~-~~---~~~~ 149 (242)
+++|++.+. + +..+..+++|+.|++++|+++ .+|. .+..+++|++|++++|.+++..|... .+ ..+.
T Consensus 176 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~ 254 (310)
T 4glp_A 176 LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN 254 (310)
T ss_dssp CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence 999998652 2 223467888999999999987 3333 25677889999999999988766543 22 4667
Q ss_pred CccccCCCCC
Q 026180 150 KGSFDGNPGL 159 (242)
Q Consensus 150 ~~~~~~n~~~ 159 (242)
.+.+++|...
T Consensus 255 ~L~Ls~N~l~ 264 (310)
T 4glp_A 255 SLNLSFAGLE 264 (310)
T ss_dssp CEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 7777777543
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=8.2e-16 Score=127.80 Aligned_cols=101 Identities=21% Similarity=0.317 Sum_probs=45.8
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+++|+.|++++|.+++. ..+..+++|+.|++++|++++. +.+..+++|+.|++++|++++..| +..+++|+.|+
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 34444444444444432 2344444555555555555432 334445555555555555543322 44555555555
Q ss_pred cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+++|.+++ +|....+..+..+.+.+|+
T Consensus 185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 185 LSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred CCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 55555543 2222233334444444443
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.9e-16 Score=139.55 Aligned_cols=105 Identities=20% Similarity=0.074 Sum_probs=59.0
Q ss_pred cCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 51 NLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG-NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 51 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
++|+.|+|++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. +..+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence 3445555555555555555555566666666666666655555554 456666666666666543 22 23456666666
Q ss_pred cCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 130 VSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 130 l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+++|.+++..|....+..+..+.+.+|.
T Consensus 198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred CCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 6666666544443334455555566654
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=8.8e-15 Score=123.46 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=86.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.++.+|...+ ++++.|++++|.+.......+ ..+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 38 l~~~~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 38 VQCSDLGLKAVPKEIS-----PDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EECCSSCCSSCCSCCC-----TTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred EECCCCCccccCCCCC-----CCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 5677777777776542 467777777777766544333 2367777788887777766677777777788888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
+++|.++ .+|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 8777777 5555443 67777777777777655556777777777777777774
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=1.1e-15 Score=137.86 Aligned_cols=144 Identities=22% Similarity=0.149 Sum_probs=116.2
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++|+++|+++.+|...+ ++|++|++++|.|.......+ ..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus 35 ~l~ls~~~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP-----PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp EEECTTSCCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGT----TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred EEEcCCCCCccCCCCCC-----CCcCEEECCCCCccccChhhh----ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 37899999999998653 689999999999886553333 448899999999999998889999999999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCCCCCCCCc--CCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTF--GKGSFDGNP 157 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--~~~~~~~n~ 157 (242)
++++|+++ .+|.. .+++|+.|++++|++++. .|..|..+++|+.|++++|.+++... ..+..+ ..+.+.+|.
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL--LPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT--GGGTTSCEEEEEEEESS
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch--hhhhhceeeEEEeeccc
Confidence 99999999 66765 899999999999999963 46889999999999999999975221 122333 555555554
Q ss_pred C
Q 026180 158 G 158 (242)
Q Consensus 158 ~ 158 (242)
.
T Consensus 181 l 181 (562)
T 3a79_B 181 Y 181 (562)
T ss_dssp C
T ss_pred c
Confidence 3
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.6e-15 Score=124.29 Aligned_cols=142 Identities=21% Similarity=0.201 Sum_probs=106.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|+|++++ .+. .+++|++|++++|.|..... ...+++|+.|+|++|.+++ +|.. .. ++|++|+
T Consensus 46 L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 46 FNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp EECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred EECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 678888888887 344 78888888888888775443 3447888888888888885 4433 23 8888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLCG 161 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~ 161 (242)
+++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|.+++. +....+..+..+.+.+|+..+.
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 88888885 33 588888999999999998854 4 578888999999999988865 4434456666777777765443
No 90
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.1e-15 Score=137.04 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=122.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
.|.++|+++++|...+ ++|++|++++|.++......+. .+++|+.|+|++|.+++..|..|..+++|++|+
T Consensus 10 c~~~~~~l~~ip~~~~-----~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCEECSSTTS----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccccccccCC-----CCccEEECcCCccCccChhhhh----cCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4788999999998653 5899999999999877654443 388999999999999988889999999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CcccccCCCcccEEecCCCccccCCCCC--CCCCCcCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQ-IPQQLGELTTLEVFDVSDNLLTGPIPRG--KQFNTFGKGSFDGNP 157 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~~~~~~~~~n~ 157 (242)
+++|.+++..|..++.+++|++|++++|.+++. .|..+..+++|+.|++++|.+.+.+|.. ..+..+..+.+.+|.
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 999999977777799999999999999999863 5678999999999999999965566532 234455555565553
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=2.1e-15 Score=126.22 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=32.9
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+++|+.|++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|+.|+
T Consensus 106 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLK 179 (308)
T ss_dssp CTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEE
Confidence 33444444444444422 21 34444444444444444422 11 33444444444444444422 11 34444444444
Q ss_pred cCCCccc
Q 026180 130 VSDNLLT 136 (242)
Q Consensus 130 l~~N~l~ 136 (242)
+++|.++
T Consensus 180 l~~n~l~ 186 (308)
T 1h6u_A 180 ADDNKIS 186 (308)
T ss_dssp CCSSCCC
T ss_pred CCCCccC
Confidence 4444443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=1.4e-15 Score=119.10 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=102.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.++.++. +. .+++|++|++++|.+........ ..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus 71 L~l~~n~~~~~~~--l~--~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 71 LTINNIHATNYNP--IS--GLSNLERLRIMGKDVTSDKIPNL----SGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp EEEESCCCSCCGG--GT--TCTTCCEEEEECTTCBGGGSCCC----TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred EEccCCCCCcchh--hh--cCCCCCEEEeECCccCcccChhh----cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 6899999988863 44 78999999999998874322222 3488999999999999988899999999999999
Q ss_pred ccCCC-CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 82 LSTNS-LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
+++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998 66 555 68999999999999999995 44 68899999999999999864
No 93
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=9e-15 Score=112.03 Aligned_cols=108 Identities=25% Similarity=0.279 Sum_probs=95.1
Q ss_pred ccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180 53 ITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132 (242)
Q Consensus 53 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 132 (242)
.+.+++++|.++ .+|..+ .+.+++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 478999999999 577655 48999999999999988899999999999999999999988777889999999999999
Q ss_pred CccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180 133 NLLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 133 N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 163 (242)
|.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999766543 356778888999999999885
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=4.3e-16 Score=144.65 Aligned_cols=116 Identities=25% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCc
Q 026180 14 DPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPP 93 (242)
Q Consensus 14 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 93 (242)
...|. .+.+|+.|+|++|.+..++...+ .++.|+.|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|.
T Consensus 217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 217 KDSKY--DDQLWHALDLSNLQIFNISANIF-----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGG-----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred hhhhc--cCCCCcEEECCCCCCCCCChhhc-----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 44454 56667777777666654433222 3566677777777776 66666667777777777777776 5666
Q ss_pred ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC
Q 026180 94 TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI 139 (242)
Q Consensus 94 ~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 139 (242)
.++.+++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 6666777777777777766 55666666777777777776666443
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.3e-15 Score=127.45 Aligned_cols=142 Identities=18% Similarity=0.230 Sum_probs=106.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.++. +. .+++|++|++++|.+..... ...+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 90 L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 157 (308)
T 1h6u_A 90 LELSGNPLKNVSA--IA--GLQSIKTLDLTSTQITDVTP------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157 (308)
T ss_dssp EECCSCCCSCCGG--GT--TCTTCCEEECTTSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred EEccCCcCCCchh--hc--CCCCCCEEECCCCCCCCchh------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence 4566666666542 33 56667777777766654321 3457899999999999996544 88999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGLC 160 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 160 (242)
+++|.+++ ++. +..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..| ...+..+..+.+.+|+..+
T Consensus 158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 158 IGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred ccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 99999995 444 8899999999999999986543 8889999999999999986553 3445666777788887533
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=2.6e-15 Score=127.18 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=70.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|++..++. +. .+++|+.|++++|.+..... ...+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 182 L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp EECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred EEccCCccccccc--cc--CCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 5677777777665 33 55666666666655543221 2234555556666555553322 45555555555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCC-CCCCcCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGK-QFNTFGKGSFDGNP 157 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~n~ 157 (242)
+++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|... .+..+..+.+.+|+
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 555555532 2345555555555555555532 234455555555555555544333211 23334444444444
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=9.3e-16 Score=128.81 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=55.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.+++ |. .+++|++|++++|.+..... .++|+.|++++|.+++..+. .+++|++|+
T Consensus 63 L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~---------~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~ 126 (317)
T 3o53_A 63 LNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLV---------GPSIETLHAANNNISRVSCS---RGQGKKNIY 126 (317)
T ss_dssp EECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEE---------CTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred EECCCCcCCcchh--hh--hcCCCCEEECcCCccccccC---------CCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence 4555555554443 33 55566666666665554331 12333333333333322221 234455555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccc-cCCCcccEEecCCCccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLT 136 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~ 136 (242)
+++|++++..+..+..+++|+.|++++|.+++..|..+ ..+++|+.|++++|.++
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 55555554444445555555555555555554433333 23445555555555544
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=9e-16 Score=118.09 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=85.0
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
|+.|+.+.|.+.+. |. ...+|+.|++++|.+..++ .+....++|+.|++++|.+++. ..+..+++|++|
T Consensus 1 m~~lt~~~i~~~~~--~~--~~~~L~~L~l~~n~l~~i~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L 69 (176)
T 1a9n_A 1 MVKLTAELIEQAAQ--YT--NAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69 (176)
T ss_dssp -CCCCHHHHHTSCE--EE--CTTSCEEEECTTSCCCSCC-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE
T ss_pred CccccHHHHHHHHh--cC--CcCCceEEEeeCCCCchhH-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE
Confidence 45566666655443 33 6667888888887776442 1222344788888888888754 567778888888
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcc--cccCCCcccEEecCCCccc
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQ--QLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~ 136 (242)
++++|.+++..+..+..+++|+.|++++|+++ .+|. .+..+++|+.|++++|+++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 88888887554444577788888888888886 4555 6777788888888888877
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=8.8e-15 Score=121.54 Aligned_cols=140 Identities=24% Similarity=0.258 Sum_probs=116.7
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.|+.++. +. .+++|++|++++|.+..... ...+++|+.|++++|.+++ +| .+..+++|++|+
T Consensus 51 L~l~~~~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 51 IIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp EECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred EEccCCCcccChh--Hh--cCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 6899999999975 55 78999999999998876543 3458899999999999995 44 488999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 158 (242)
+++|++++. +.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| ...+..+..+.+.+|..
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 999999953 4688999999999999999965 568899999999999999997655 44566677777777743
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=5.2e-15 Score=134.59 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=72.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.++. +. .+++|+.|++++|.|...+ ....+++|+.|+|++|.+++. ..+..+++|+.|+
T Consensus 70 L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 70 LFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 137 (605)
T ss_dssp EECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred EEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence 3444444444443 22 4445555555544443321 112245555555555555532 2355556666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++. |....+..+..+.+.+|+
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 666666533 445566666666666666665444 56666666666666666642 333334444555555543
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=4.9e-16 Score=119.57 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=103.0
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+|+.++. +. ...++|++|++++|.|.... .+ ..+++|+.|+|++|.|++..+..|..+++|++|+
T Consensus 24 L~l~~n~l~~i~~--~~-~~~~~L~~L~Ls~N~l~~~~--~l----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 24 LDLRGYKIPVIEN--LG-ATLDQFDAIDFSDNEIRKLD--GF----PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp EECTTSCCCSCCC--GG-GGTTCCSEEECCSSCCCEEC--CC----CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred EEeeCCCCchhHH--hh-hcCCCCCEEECCCCCCCccc--cc----ccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 6899999999864 33 13449999999999988762 22 2378999999999999966556668999999999
Q ss_pred ccCCCCCCCCCc--ccCCCCCCCEEeCCCCCCCCCCccc----ccCCCcccEEecCCCccc
Q 026180 82 LSTNSLQGHIPP--TLGNLIVLESLDLSNNKLSGQIPQQ----LGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 82 L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 136 (242)
+++|.++ .+|. .+..+++|+.|++++|.++ ..|.. +..+++|+.|++++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999997 5665 7889999999999999998 55664 889999999999999875
No 102
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2.5e-14 Score=110.05 Aligned_cols=107 Identities=22% Similarity=0.294 Sum_probs=93.5
Q ss_pred cEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCC
Q 026180 54 TAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDN 133 (242)
Q Consensus 54 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N 133 (242)
+.+++++|+++ .+|..+. +.|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78999999998 6777654 89999999999999888999999999999999999999776667899999999999999
Q ss_pred ccccCCCCC-CCCCCcCCccccCCCCCCCCC
Q 026180 134 LLTGPIPRG-KQFNTFGKGSFDGNPGLCGQP 163 (242)
Q Consensus 134 ~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 163 (242)
.+++..+.. ..+..+..+.+.+|++.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999655542 346778888999999999875
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=3.4e-15 Score=136.69 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=88.5
Q ss_pred CCCCcccCCCCCCCCCCCCCcccceeeeEEEe------------------ecCCchhhHHHhhcCccEEEccCCCCccCc
Q 026180 6 ANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL------------------SNKGTELEYEKLSNLITAIILSNNSFVGEI 67 (242)
Q Consensus 6 ~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~------------------~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 67 (242)
+|+++.||.. |. .+++|++|++++|.+.. ++.... +..+++|+.|+|++|.+.+.+
T Consensus 192 ~n~l~~ip~~-l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~---~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 192 SNNITFVSKA-VM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK---WDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp SCEEEEECGG-GG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC---GGGCTTCCEEEEECCTTCSSC
T ss_pred cCCCccCCHH-Hh--cccCCCEEECcCCccccccccccccccccchhcccCchhhh---hcccCCCCEEEecCCcCCccC
Confidence 3445555542 33 56666666666666554 111111 013566666666666666666
Q ss_pred chhccCCCCCCEEeccCCC-CCC-CCCcccCCC------CCCCEEeCCCCCCCCCCcc--cccCCCcccEEecCCCcccc
Q 026180 68 PTSIANLKGLRTLNLSTNS-LQG-HIPPTLGNL------IVLESLDLSNNKLSGQIPQ--QLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 68 p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~ 137 (242)
|..+..+++|++|++++|+ +++ .+|..++.+ ++|+.|++++|+++ .+|. .+..+++|+.|++++|.++|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 6666666667777777666 665 566655554 66777777777776 6666 67777778888888888777
Q ss_pred CCCCCCCCCCcCCccccCC
Q 026180 138 PIPRGKQFNTFGKGSFDGN 156 (242)
Q Consensus 138 ~~p~~~~~~~~~~~~~~~n 156 (242)
.+|....+..+..+.+.+|
T Consensus 345 ~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 345 KLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp ECCCCEEEEEESEEECCSS
T ss_pred chhhhCCCCCCCEEECCCC
Confidence 7773333445555556555
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=7.1e-15 Score=112.00 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=104.9
Q ss_pred CCCCCcccceeeeEEE--eecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCC
Q 026180 21 RYPALTYYGFSYYSLT--LSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNL 98 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 98 (242)
..++|+.|++++|.+. .++.. ...+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH-----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 4578999999999887 44332 23478999999999999965 778999999999999999997788888889
Q ss_pred CCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccccCCC----CCCCCCCcCCccccCCC
Q 026180 99 IVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTGPIP----RGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 99 ~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p----~~~~~~~~~~~~~~~n~ 157 (242)
++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ....+..+..+.+.+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 99999999999999642 2688999999999999999996544 12345556666666664
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.1e-14 Score=119.25 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=104.9
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
.++|++|+|+.++. +. .+++|++|++++|.+...+... ..+|+.|+|++|.+++. + .+..+++|+.|
T Consensus 67 ~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~~-------~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L 133 (263)
T 1xeu_A 67 ELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGIP-------SACLSRLFLDNNELRDT-D-SLIHLKNLEIL 133 (263)
T ss_dssp EEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTCC-------CSSCCEEECCSSCCSBS-G-GGTTCTTCCEE
T ss_pred EEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCccc-------cCcccEEEccCCccCCC-h-hhcCcccccEE
Confidence 37899999999998 66 8999999999999887654321 17899999999999964 4 58899999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGP 138 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 138 (242)
++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999954 4 688999999999999999966 6688999999999999999855
No 106
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.5e-15 Score=139.27 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=99.6
Q ss_pred CcccCCCCCcc------------------cCCCC-CCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC
Q 026180 1 MKDVNANNLTY------------------LQDPL-LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN 61 (242)
Q Consensus 1 ~~dLs~N~i~~------------------l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n 61 (242)
++||++|+|+. +|... |. .+++|++|++++|.+... .+.....+++|+.|+|++|
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~--~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS--NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG--GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTC
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhc--cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCC
Confidence 36889999988 88776 44 688899999988764321 1122344677777777777
Q ss_pred C-Ccc-CcchhccCCC-------CCCEEeccCCCCCCCCCc--ccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEec
Q 026180 62 S-FVG-EIPTSIANLK-------GLRTLNLSTNSLQGHIPP--TLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDV 130 (242)
Q Consensus 62 ~-i~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l 130 (242)
+ +++ .+|..++.++ +|+.|++++|+++ .+|. .+..+++|+.|++++|+++ .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 6 776 6666555444 7777777777777 6666 6777777777777777777 666 6777777777777
Q ss_pred CCCccccCCCCCC-CCCC-cCCccccCCC
Q 026180 131 SDNLLTGPIPRGK-QFNT-FGKGSFDGNP 157 (242)
Q Consensus 131 ~~N~l~~~~p~~~-~~~~-~~~~~~~~n~ 157 (242)
++|.++ .+|... .+.. +..+.+.+|.
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCC
Confidence 777777 555432 2333 5555555554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=3e-14 Score=129.57 Aligned_cols=140 Identities=24% Similarity=0.284 Sum_probs=117.7
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
.++|++|.|..++. +. .+++|+.|++++|.|..... ...+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus 47 ~L~l~~n~i~~l~~--l~--~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 47 QIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp CCBCTTCCCCCCTT--GG--GCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred EEECcCCCCCCChH--Hc--cCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 37899999999984 55 88999999999998876543 3458999999999999995 34 68899999999
Q ss_pred eccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCC
Q 026180 81 NLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNP 157 (242)
Q Consensus 81 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 157 (242)
+|++|.+++ + +.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| ...+..+..+.+.+|.
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 999999995 3 4588999999999999999965 578999999999999999997766 4456667777777774
No 108
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=2.8e-14 Score=125.81 Aligned_cols=140 Identities=22% Similarity=0.265 Sum_probs=76.8
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180 3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82 (242)
Q Consensus 3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 82 (242)
||++|+++.++. +. .+++|+.|++++|.+..... ...+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 249 ~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 249 DLANNQISNLAP--LS--GLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp ECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred ECCCCccccchh--hh--cCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 444444444443 22 44455555555554443221 2235556666666666654333 455666666666
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCCC
Q 026180 83 STNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPGL 159 (242)
Q Consensus 83 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~ 159 (242)
++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| ...+..+..+.+.+|++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 6666664433 45666666666666666643 346666777777777777766555 334455555556666543
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.7e-14 Score=130.40 Aligned_cols=122 Identities=24% Similarity=0.261 Sum_probs=102.5
Q ss_pred cCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEecc
Q 026180 4 VNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLS 83 (242)
Q Consensus 4 Ls~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~ 83 (242)
+++|.|+.++.. .|+.|++++|.|+.++. ...+++|+.|+|++|.|+ .+|..++.+++|+.|+|+
T Consensus 430 l~~n~i~~l~~~--------~L~~L~Ls~n~l~~lp~------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 430 LLENSVLKMEYA--------DVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHT--------TCSEEECTTSCCSSCCC------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred hhcccccccCcc--------CceEEEecCCCCCCCcC------ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC
Confidence 344555555432 48889999998876542 345889999999999999 789999999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCC-cccccCCCcccEEecCCCccccCCCCC
Q 026180 84 TNSLQGHIPPTLGNLIVLESLDLSNNKLSGQI-PQQLGELTTLEVFDVSDNLLTGPIPRG 142 (242)
Q Consensus 84 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~ 142 (242)
+|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|..
T Consensus 495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 999995 66 7999999999999999999876 999999999999999999999776643
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=2e-14 Score=121.76 Aligned_cols=142 Identities=21% Similarity=0.239 Sum_probs=120.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|++..++. +. .+++|++|++++|.+..... ...+++|+.|++++|.+++. +.+..+++|++|+
T Consensus 204 L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 204 FTAYVNQITDITP--VA--NMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN 271 (347)
T ss_dssp EECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred eecccCCCCCCch--hh--cCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence 6889999999887 55 88999999999998875443 34588999999999999954 4688999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCCCCCcCCccccCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQFNTFGKGSFDGNPG 158 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 158 (242)
+++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|+.
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 999999954 458899999999999999998888999999999999999999997766 44567778888888863
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=8.6e-15 Score=109.36 Aligned_cols=122 Identities=23% Similarity=0.216 Sum_probs=99.6
Q ss_pred cccCCCCCc--ccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLT--YLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~--~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
+++++|+|+ .+|. .+. .+++|++|++++|.+... . ....+++|+.|++++|.+++.+|..+..+++|++
T Consensus 22 L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 22 LVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp EECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred EEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 688999998 7775 555 788999999999988765 1 1233788999999999999778888888999999
Q ss_pred EeccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCCc---ccccCCCcccEEecCC
Q 026180 80 LNLSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQIP---QQLGELTTLEVFDVSD 132 (242)
Q Consensus 80 L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p---~~~~~l~~L~~L~l~~ 132 (242)
|++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999853 34778899999999999999986655 4788899999998763
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=6.8e-14 Score=118.61 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=69.8
Q ss_pred hcCccEEEccC-CCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEE
Q 026180 50 SNLITAIILSN-NSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF 128 (242)
Q Consensus 50 ~~~L~~L~Ls~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 128 (242)
+.+|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 56688888885 888877777788888888888888888877777788888888888888888866555565555 8888
Q ss_pred ecCCCccccCCC
Q 026180 129 DVSDNLLTGPIP 140 (242)
Q Consensus 129 ~l~~N~l~~~~p 140 (242)
+|.+|++.+.+.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 888888876543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=6.2e-14 Score=130.18 Aligned_cols=146 Identities=29% Similarity=0.342 Sum_probs=95.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeec-----CCchhhHHHhhcCccEEEccCCCCccCcchhccCCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSN-----KGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKG 76 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~ 76 (242)
++|.+|.+..++...+ +.++|+.|.|.... .......+..+..|+.|+|++|.+. .+|..+..+++
T Consensus 178 l~L~~n~~~~~~~~~l--------~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 178 IELFANGKDEANQALL--------QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred EEeeCCCCCcchhhHh--------hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 4667777777665543 33334443333221 1122233445789999999999999 77777789999
Q ss_pred CCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCC-CCCCCcCCccccC
Q 026180 77 LRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRG-KQFNTFGKGSFDG 155 (242)
Q Consensus 77 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~ 155 (242)
|++|+|++|.|+ .+|..+..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|.. ..+..+..+.+.+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999999 89999999999999999999999 77999999999999999999998 66765 3456777788888
Q ss_pred CCCC
Q 026180 156 NPGL 159 (242)
Q Consensus 156 n~~~ 159 (242)
|+..
T Consensus 326 N~l~ 329 (727)
T 4b8c_D 326 NPLE 329 (727)
T ss_dssp SCCC
T ss_pred CccC
Confidence 8654
No 114
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=1.9e-13 Score=115.89 Aligned_cols=103 Identities=21% Similarity=0.106 Sum_probs=79.1
Q ss_pred cccCCC-CCcccCCCCCCCCCCCCCcccceee-eEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNAN-NLTYLQDPLLGPVRYPALTYYGFSY-YSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N-~i~~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
+|++++ +|+.||. +. .+.+|+.|+|++ |.|..+....+. .+++|+.|+|++|+|++..|..|..+++|+.
T Consensus 13 v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLR----GLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp EECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSC----SCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhc----cccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 567777 8888887 55 677888888885 888776644433 3788888888888888888888888888888
Q ss_pred EeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCC
Q 026180 80 LNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSG 113 (242)
Q Consensus 80 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 113 (242)
|+|++|+|++..+..|..+. |+.|+|.+|.+..
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888888865555565555 8888888888873
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=8.5e-14 Score=125.67 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=15.8
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTL 37 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~ 37 (242)
+||++|+|+.|| . .+++|++|++++|.|+.
T Consensus 85 L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 85 LEITQNALISLP-E-----LPASLEYLDACDNRLST 114 (571)
T ss_dssp EECCSSCCSCCC-C-----CCTTCCEEECCSSCCSC
T ss_pred EECcCCCCcccc-c-----ccCCCCEEEccCCCCCC
Confidence 455666666555 1 23455555555555443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=1.3e-13 Score=124.61 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=100.2
Q ss_pred CCCCCcccc-eeeeEEEeecCCchh--hHHH-hhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC
Q 026180 21 RYPALTYYG-FSYYSLTLSNKGTEL--EYEK-LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG 96 (242)
Q Consensus 21 ~~~~L~~L~-l~~n~l~~~~~~~~~--~~~~-~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 96 (242)
.+++|+.|+ ++.|.+......... .... ....|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus 407 ~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred HHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 566777777 555533211110000 0000 13468999999999995 676 899999999999999999 8899999
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCC-CCCC-CCCCcCCccccCCCC
Q 026180 97 NLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPI-PRGK-QFNTFGKGSFDGNPG 158 (242)
Q Consensus 97 ~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~-~~~~~~~~~~~~n~~ 158 (242)
.+++|+.|+|++|++++ +| .+..+++|+.|++++|.+++.. |... .+..+..+.+.+|+.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 99999999999999996 67 7899999999999999999875 6543 466777888888864
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=8.5e-14 Score=118.42 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=57.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEE-EeecCCchhhHHHhhcCcc-EEEccCCCCccCcchhccCCCCCCE
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSL-TLSNKGTELEYEKLSNLIT-AIILSNNSFVGEIPTSIANLKGLRT 79 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~L~-~L~Ls~n~i~~~~p~~~~~l~~L~~ 79 (242)
+||++|+|+.||..+|. .+++|++|++++|.+ +.++.+.+.. ++++. .+++++|+++...|..|..+++|++
T Consensus 35 L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~----L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 35 LRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSN----LPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp EEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCS----CTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred EEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhc----chhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57778888888877777 777888888887765 4444444322 44444 3556667777666777777777777
Q ss_pred EeccCCCCCCCCC
Q 026180 80 LNLSTNSLQGHIP 92 (242)
Q Consensus 80 L~L~~n~l~~~~p 92 (242)
|++++|++....+
T Consensus 109 L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 109 LLISNTGIKHLPD 121 (350)
T ss_dssp EEEEEECCSSCCC
T ss_pred ccccccccccCCc
Confidence 7777777764443
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.3e-14 Score=127.01 Aligned_cols=89 Identities=30% Similarity=0.363 Sum_probs=45.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.||. |. . +|++|++++|.|..++. .+++|+.|+|++|.|++ +|. .+++|++|+
T Consensus 105 L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 105 LDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE--------LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp EECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred EEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC--------cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 5666777766665 32 1 56666666665554322 24455555555555553 333 344555555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+++|.+++ +|. +. ++|+.|++++|+|+
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 55555553 333 33 44555555555544
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.45 E-value=1.8e-13 Score=120.60 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=41.6
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 4455555555555553332 4455555555555555553222 4455555555555555553322 44555555555
Q ss_pred cCCCccccC
Q 026180 130 VSDNLLTGP 138 (242)
Q Consensus 130 l~~N~l~~~ 138 (242)
+++|.+++.
T Consensus 316 L~~n~l~~~ 324 (466)
T 1o6v_A 316 LYFNNISDI 324 (466)
T ss_dssp CCSSCCSCC
T ss_pred CcCCcCCCc
Confidence 555555543
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=6e-13 Score=117.24 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=78.5
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.+| .+. .+++|++|++++|.++..+ ...+++|+.|++++|.+++. + ++.+++|++|+
T Consensus 47 L~Ls~n~l~~~~--~l~--~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 47 LDCHNSSITDMT--GIE--KLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp EECCSSCCCCCT--TGG--GCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred EEccCCCcccCh--hhc--ccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 678888888876 355 7788888888888776542 23467788888888888754 3 67778888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNL 134 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 134 (242)
+++|++++ +| +..+++|+.|++++|++++. + +..+++|+.|++++|.
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence 88888775 33 67777777777777777753 2 4455555555555553
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.40 E-value=1.2e-12 Score=115.30 Aligned_cols=60 Identities=42% Similarity=0.413 Sum_probs=28.3
Q ss_pred cCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 72 ANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 72 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 3344444444444444422 14444555555555555553 33 4455555555555555554
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=1.5e-12 Score=114.65 Aligned_cols=116 Identities=28% Similarity=0.349 Sum_probs=78.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+|+.+|. |. .+++|++|++++|.+..++. .+.+|+.|++++|.+++ +| .+..+++|++|+
T Consensus 136 L~L~~n~l~~lp~--~~--~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 136 LGVSNNQLEKLPE--LQ--NSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp EECCSSCCSSCCC--CT--TCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred EECcCCCCCCCcc--cC--CCCCCCEEECCCCcCcccCC--------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 5677777777772 55 77788888888777664322 13477888888888775 45 477777888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
+++|++++ +|... ++|+.|++++|.++ .+|. +..+++|+.|++++|++++
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 87777774 44322 46667777777766 4553 6667777777777777764
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=1.8e-12 Score=114.17 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=73.9
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+||++|+++.+|. .+.+|++|++++|.+...+. .+++|+.|++++|.+++ +| .|..+++|++|+
T Consensus 96 L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~--------~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 96 LVASCNSLTELPE------LPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp EECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCS--------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred EEccCCcCCcccc------ccCCCcEEECCCCccCcccC--------CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 4555555555553 22456666666665543221 13577888888888875 56 477888888888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcccc
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
+++|++++ +|..+ .+|+.|++++|.+++ +| .+..+++|+.|++++|.+++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 88888774 55433 477777777777775 45 46777777777777777764
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.9e-15 Score=116.68 Aligned_cols=115 Identities=21% Similarity=0.170 Sum_probs=95.1
Q ss_pred CCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCccc
Q 026180 16 LLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTL 95 (242)
Q Consensus 16 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 95 (242)
.|. .+++|++|++++|.+..++ ....+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+
T Consensus 43 ~~~--~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 43 TLS--TLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp HHH--HTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred HHh--cCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 455 7889999999999887643 2245889999999999999 678888888999999999999985 45 58
Q ss_pred CCCCCCCEEeCCCCCCCCCCc-ccccCCCcccEEecCCCccccCCCC
Q 026180 96 GNLIVLESLDLSNNKLSGQIP-QQLGELTTLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 96 ~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~ 141 (242)
..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 888999999999999985432 4688899999999999999877665
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=2.2e-14 Score=122.59 Aligned_cols=135 Identities=20% Similarity=0.249 Sum_probs=74.1
Q ss_pred cccCCCCCcccCC----CCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHh-hcCccEEEccCCCCccCcchhcc---
Q 026180 2 KDVNANNLTYLQD----PLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKL-SNLITAIILSNNSFVGEIPTSIA--- 72 (242)
Q Consensus 2 ~dLs~N~i~~l~~----~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~~~p~~~~--- 72 (242)
+||++|+|+.++. ..|. .++ +|++|++++|.|.............. .++|+.|+|++|.+++..+..+.
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 5777777777775 4555 566 77777777776553321111111111 26677777777777655555333
Q ss_pred -CC-CCCCEEeccCCCCCCCCCccc----CC-CCCCCEEeCCCCCCCCCCc----ccccCCC-cccEEecCCCccccC
Q 026180 73 -NL-KGLRTLNLSTNSLQGHIPPTL----GN-LIVLESLDLSNNKLSGQIP----QQLGELT-TLEVFDVSDNLLTGP 138 (242)
Q Consensus 73 -~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~ 138 (242)
.+ ++|++|++++|.+++..+..+ .. ..+|+.|++++|.++...+ ..+..++ +|+.|++++|.+++.
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 33 667777777777665444332 22 2466666666666653222 2223333 566666666655543
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=1.8e-12 Score=118.18 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCCcccceeeeEEEeecCCchh------------hHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCC
Q 026180 22 YPALTYYGFSYYSLTLSNKGTEL------------EYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQG 89 (242)
Q Consensus 22 ~~~L~~L~l~~n~l~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~ 89 (242)
+++|+.|++++|.|..++..... .+...+++|+.|+|++|.|++ +| ..+++|+.|++++|.|+
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred CCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence 46777777777776643321000 000012344445555554442 23 23344555555555555
Q ss_pred CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCC
Q 026180 90 HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIP 140 (242)
Q Consensus 90 ~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 140 (242)
.+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3333 3345555555555555 445555555555555555555554433
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=2.3e-14 Score=123.36 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=7.5
Q ss_pred CCCCCcccceeeeEEE
Q 026180 21 RYPALTYYGFSYYSLT 36 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~ 36 (242)
.+++|++|++++|.+.
T Consensus 92 ~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFG 107 (386)
T ss_dssp TCTTCCEEECCSCCCC
T ss_pred hCCcccEEECCCCcCC
Confidence 3444555555544433
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=9.9e-15 Score=125.61 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=17.7
Q ss_pred cccCCCCCcc-----cCCCCCCCCCCCCCcccceeeeEEE
Q 026180 2 KDVNANNLTY-----LQDPLLGPVRYPALTYYGFSYYSLT 36 (242)
Q Consensus 2 ~dLs~N~i~~-----l~~~~~~~~~~~~L~~L~l~~n~l~ 36 (242)
+||++|+|.. ++. .+. .+++|++|++++|.+.
T Consensus 99 L~Ls~n~l~~~~~~~l~~-~l~--~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLID-FLS--KHTPLEHLYLHNNGLG 135 (386)
T ss_dssp EECCSCCCCTTTHHHHHH-HHH--HCTTCCEEECCSSCCH
T ss_pred EECCCCcCCHHHHHHHHH-HHH--hCCCCCEEECcCCCCC
Confidence 5667777665 222 222 4566666666666553
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1.1e-14 Score=113.97 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=101.5
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEE
Q 026180 1 MKDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTL 80 (242)
Q Consensus 1 ~~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 80 (242)
++||++|+|+.+| .+. .+++|++|++++|.+..++ .....+++|+.|++++|.+++ +| .+..+++|++|
T Consensus 52 ~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~-----~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 52 HLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp EEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCS-----SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred EEECCCCCCcccc--ccc--cCCCCCEEECCCCCccccc-----chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 3789999999998 566 8899999999999998443 233457899999999999995 55 68899999999
Q ss_pred eccCCCCCCCCC-cccCCCCCCCEEeCCCCCCCCCCccc----------ccCCCcccEEecCCCccc
Q 026180 81 NLSTNSLQGHIP-PTLGNLIVLESLDLSNNKLSGQIPQQ----------LGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 81 ~L~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~----------~~~l~~L~~L~l~~N~l~ 136 (242)
++++|++++..+ ..+..+++|+.|++++|.+++..|.. +..+++|+.|+ +|.++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999995433 47889999999999999998765542 77899999886 66665
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=2.6e-12 Score=109.16 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCCEEeccCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCcccccCCCcccEEecCCCccc
Q 026180 76 GLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSN-NKLSGQIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 76 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
.++.|++++|+|+ .+|.......+|+.+++++ |.++...++.|..+++|+.|++++|+++
T Consensus 155 ~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3556666777766 3333333445666666653 4555333345667777777777777776
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=5.6e-12 Score=114.96 Aligned_cols=142 Identities=25% Similarity=0.256 Sum_probs=73.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchh------------hHHHhhcCccEEEccCCCCccCcch
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTEL------------EYEKLSNLITAIILSNNSFVGEIPT 69 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------------~~~~~~~~L~~L~Ls~n~i~~~~p~ 69 (242)
++|++|+|+.+|. .+++|++|++++|.+..++..... .....+++|+.|++++|.+++ +|.
T Consensus 126 L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~ 198 (622)
T 3g06_A 126 LWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT 198 (622)
T ss_dssp EECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred EECCCCCCCcCCC------CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence 3455555555554 235667777776665543221100 000112556666666666663 222
Q ss_pred hccC-----------------CCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180 70 SIAN-----------------LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132 (242)
Q Consensus 70 ~~~~-----------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 132 (242)
.+.. +++|++|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 2111 1445555555555552 33 23456666666666666 3444 456677777777
Q ss_pred CccccCCCCCC-CCCCcCCccccCCCCC
Q 026180 133 NLLTGPIPRGK-QFNTFGKGSFDGNPGL 159 (242)
Q Consensus 133 N~l~~~~p~~~-~~~~~~~~~~~~n~~~ 159 (242)
|.++ .+|... .+..+..+.+.+|+..
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 7777 455432 3445555666777643
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=2e-13 Score=114.88 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=109.3
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
+++++|.+...+...+ .+++|++|++++|.+... ........+++|+.|+|++|.+++..+..+..+++|++|+
T Consensus 75 L~l~~n~l~~~~~~~~---~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 75 FRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp EECTTCEECSCCCSCC---CCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred EEcCCccccccchhhc---cCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5788898888877644 688999999999886521 1223345578999999999999888888888899999999
Q ss_pred ccCC-CCCCC-CCcccCCCCCCCEEeCCCC-CCCCC-CcccccCCC-cccEEecCCCc--cc-cCCCCC-CCCCCcCCcc
Q 026180 82 LSTN-SLQGH-IPPTLGNLIVLESLDLSNN-KLSGQ-IPQQLGELT-TLEVFDVSDNL--LT-GPIPRG-KQFNTFGKGS 152 (242)
Q Consensus 82 L~~n-~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~-~L~~L~l~~N~--l~-~~~p~~-~~~~~~~~~~ 152 (242)
+++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|+.|++++|. ++ +.+|.. ..+.++..+.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67753 5666778889999999998 88754 466677788 88888888884 43 222221 1234455556
Q ss_pred ccCCC
Q 026180 153 FDGNP 157 (242)
Q Consensus 153 ~~~n~ 157 (242)
+.+|.
T Consensus 229 l~~~~ 233 (336)
T 2ast_B 229 LSDSV 233 (336)
T ss_dssp CTTCT
T ss_pred CCCCC
Confidence 66654
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=6.5e-13 Score=111.78 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=58.3
Q ss_pred cccCCCCCccc-CCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC-CCccC-cchhccCCCCCC
Q 026180 2 KDVNANNLTYL-QDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGE-IPTSIANLKGLR 78 (242)
Q Consensus 2 ~dLs~N~i~~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~-~p~~~~~l~~L~ 78 (242)
+||++|.++.. -...+. .+++|++|++++|.+... .......+++|+.|++++| .+++. ++..+..+++|+
T Consensus 98 L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp EECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred EEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 45566655432 111223 455666666665543211 1111122455555555555 44431 344445555555
Q ss_pred EEeccCC-CCCCC-CCcccCCCC-CCCEEeCCCC--CCC-CCCcccccCCCcccEEecCCCc
Q 026180 79 TLNLSTN-SLQGH-IPPTLGNLI-VLESLDLSNN--KLS-GQIPQQLGELTTLEVFDVSDNL 134 (242)
Q Consensus 79 ~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-~~~p~~~~~l~~L~~L~l~~N~ 134 (242)
+|++++| .+++. ++..+..++ +|+.|++++| .++ +.+|..+..+++|+.|++++|.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 5555555 55432 333344455 5555555555 233 2233444445555555555554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=2.8e-13 Score=115.64 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=103.1
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhc-CccEEEccCCCCccCcchhccCC-----C
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSN-LITAIILSNNSFVGEIPTSIANL-----K 75 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~p~~~~~l-----~ 75 (242)
.+|++|+++...+..+. ...+|++|++++|.|...........+..++ +|+.|+|++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS--IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHT--SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHh--CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 57899999876555444 4556999999999876543222223334455 89999999999998878877765 9
Q ss_pred CCCEEeccCCCCCCCCCccc----CCC-CCCCEEeCCCCCCCCCCccccc----C-CCcccEEecCCCcccc
Q 026180 76 GLRTLNLSTNSLQGHIPPTL----GNL-IVLESLDLSNNKLSGQIPQQLG----E-LTTLEVFDVSDNLLTG 137 (242)
Q Consensus 76 ~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~l~~N~l~~~~p~~~~----~-l~~L~~L~l~~N~l~~ 137 (242)
+|++|++++|.+++..+..+ ..+ ++|+.|++++|++++..+..+. . .++|+.|++++|.++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 99999999999997776644 444 8999999999999976665443 3 3699999999999984
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=7.9e-11 Score=99.10 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=67.2
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCC-EEeCCCCCCCCCCcccccCCCcccEE
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLE-SLDLSNNKLSGQIPQQLGELTTLEVF 128 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~L 128 (242)
+++|+.++|++|+++...+..|.++.+|+.+++++| +....+.+|.++.+|+ .+++.+ .++...+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567888888888888666677888888888888887 7766667788888888 888887 6765666788888888888
Q ss_pred ecCCCccc
Q 026180 129 DVSDNLLT 136 (242)
Q Consensus 129 ~l~~N~l~ 136 (242)
++++|.++
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 88888776
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=2.5e-13 Score=119.07 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=82.9
Q ss_pred cccCCCCCcccC----CCCCCCCCCCCCcccceeeeEEEeecCCch-hhHHHhhcCccEEEccCCCCccC----cchhcc
Q 026180 2 KDVNANNLTYLQ----DPLLGPVRYPALTYYGFSYYSLTLSNKGTE-LEYEKLSNLITAIILSNNSFVGE----IPTSIA 72 (242)
Q Consensus 2 ~dLs~N~i~~l~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~ 72 (242)
++|++|+|+..+ ...+. .+++|++|++++|.+........ ......++.|+.|++++|.++.. ++..+.
T Consensus 204 L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 204 LKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp EECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred EEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 678888887632 11233 56788888888876543211000 11111256788888888887753 566666
Q ss_pred CCCCCCEEeccCCCCCCCCCcccC-----CCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCcccc
Q 026180 73 NLKGLRTLNLSTNSLQGHIPPTLG-----NLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 73 ~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
.+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|+.|++++|.++.
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 778888888888877644333222 225777777777777654 34455566777777777777654
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=6.2e-11 Score=99.75 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=83.9
Q ss_pred cccCCCCCc--------------------ccCCCCCCCCC--------CCCCcccceeeeEEEeecCCchhhHHHhhcCc
Q 026180 2 KDVNANNLT--------------------YLQDPLLGPVR--------YPALTYYGFSYYSLTLSNKGTELEYEKLSNLI 53 (242)
Q Consensus 2 ~dLs~N~i~--------------------~l~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L 53 (242)
+||++|+|. .||+.+|. . +++|+.|+++. .+..++...+.. +++|
T Consensus 54 LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~----~~~L 126 (329)
T 3sb4_A 54 LDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG----CDNL 126 (329)
T ss_dssp EEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTT----CTTC
T ss_pred EecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhc----Cccc
Confidence 678888887 67888887 7 88899999887 777777776654 7888
Q ss_pred cEEEccCCCCccCcchhccC------------------------------------------------------------
Q 026180 54 TAIILSNNSFVGEIPTSIAN------------------------------------------------------------ 73 (242)
Q Consensus 54 ~~L~Ls~n~i~~~~p~~~~~------------------------------------------------------------ 73 (242)
+.|++++|.+....+.+|..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999888764333333332
Q ss_pred ------------------CCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCccc-EEecCC
Q 026180 74 ------------------LKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLE-VFDVSD 132 (242)
Q Consensus 74 ------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~L~l~~ 132 (242)
+++|+.+++++|+++...+..|.++.+|+.+++.+| ++...+..|.++.+|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 456666666666666555556666666777766666 5545555666666666 666665
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=4e-12 Score=111.39 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=49.2
Q ss_pred cccCCCCCcccCCCC-CCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-cCCC----
Q 026180 2 KDVNANNLTYLQDPL-LGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-ANLK---- 75 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-~~l~---- 75 (242)
+||++|+++..+... |. .+++|++|++++|.+..............+++|+.|+|++|.++...+..+ ..+.
T Consensus 8 L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred hhhhhcccCchhHHHHHh--hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 456666665544322 33 455666666666554422111111222223455555555555543222222 1233
Q ss_pred CCCEEeccCCCCCC----CCCcccCCCCCCCEEeCCCCCCC
Q 026180 76 GLRTLNLSTNSLQG----HIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 76 ~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+|++|++++|.++. .++..+..+++|+.|++++|.++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 35555555555542 22444445555555555555544
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=4e-12 Score=109.12 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=98.6
Q ss_pred cccCCCCCcccCCCCCCCC---CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhc-----cC
Q 026180 2 KDVNANNLTYLQDPLLGPV---RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSI-----AN 73 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~-----~~ 73 (242)
+||++|.|+......+... ...+|+.|++++|.|.... ...+...+.+|+.|+|++|.++......+ ..
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~---~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG---LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH---HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH---HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 6788888877554433211 2358899999888764321 12223446678899999998875444443 24
Q ss_pred CCCCCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCccccCCCCC---
Q 026180 74 LKGLRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTGPIPRG--- 142 (242)
Q Consensus 74 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~--- 142 (242)
.+.|++|+|++|.++.. ++..+...++|+.|+|++|.++.. ++..+...++|+.|+|++|.++..-...
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 57889999999988642 333446678889999999988743 2445666778899999988886321100
Q ss_pred -C-CCCCcCCccccCCC
Q 026180 143 -K-QFNTFGKGSFDGNP 157 (242)
Q Consensus 143 -~-~~~~~~~~~~~~n~ 157 (242)
. ....+..+++++|+
T Consensus 234 ~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 234 AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHCSSCCEEECTTSS
T ss_pred HHHhCCCCCEEeccCCC
Confidence 0 12445666677774
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=2.2e-11 Score=104.55 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=93.4
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHH-HhhcCccEEEccCCCCccC----cchhccCCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYE-KLSNLITAIILSNNSFVGE----IPTSIANLKG 76 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~ 76 (242)
+||++|.|+......+.. .+++|+.|++++|.|............ .....|+.|+|++|.|+.. ++..+...++
T Consensus 106 L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 106 VNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp EECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS
T ss_pred EEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC
Confidence 688999887644333321 456889999999877543222111111 1246799999999998742 4445577889
Q ss_pred CCEEeccCCCCCCCC----CcccCCCCCCCEEeCCCCCCCCC----CcccccCCCcccEEecCCCcccc
Q 026180 77 LRTLNLSTNSLQGHI----PPTLGNLIVLESLDLSNNKLSGQ----IPQQLGELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 77 L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~ 137 (242)
|++|+|++|.|++.. ...+...++|+.|+|++|.++.. ++..+...++|+.|+|++|.++.
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 999999999987532 44566678899999999999743 33345567889999999998863
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=3.7e-08 Score=80.41 Aligned_cols=65 Identities=28% Similarity=0.344 Sum_probs=29.6
Q ss_pred hcCccEEEccCCCCcc--CcchhccCCCCCCEEeccCCCCCCC-CCcccCCCCCCCEEeCCCCCCCCCC
Q 026180 50 SNLITAIILSNNSFVG--EIPTSIANLKGLRTLNLSTNSLQGH-IPPTLGNLIVLESLDLSNNKLSGQI 115 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~ 115 (242)
++.|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. .-..+..+ +|+.|+|++|.+++.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcccc
Confidence 4455555555555554 2233444455555555555555532 01112222 4555555555554433
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=3.3e-09 Score=81.98 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCCCCcccceeee-EEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCCCCEEeccCCCCCCC----C
Q 026180 21 RYPALTYYGFSYY-SLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKGLRTLNLSTNSLQGH----I 91 (242)
Q Consensus 21 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~ 91 (242)
..++|++|++++| .|...............+.|+.|+|++|.|... +...+...+.|++|+|++|.|+.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4567778888776 665432222222222245778888888887642 334444557788888888887643 2
Q ss_pred CcccCCCCCCCEEeC--CCCCCCCC----CcccccCCCcccEEecCCCccc
Q 026180 92 PPTLGNLIVLESLDL--SNNKLSGQ----IPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 92 p~~~~~l~~L~~L~l--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
...+...++|+.|++ ++|.++.. +...+...++|+.|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344566677888888 77777643 2233445577888888877764
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.52 E-value=3.1e-08 Score=89.22 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=33.0
Q ss_pred CCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCcc----CcchhccCCCCCCEEeccCCCCC
Q 026180 21 RYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVG----EIPTSIANLKGLRTLNLSTNSLQ 88 (242)
Q Consensus 21 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~ 88 (242)
.+++|++|++++|.+..............+++|+.|++++|.+++ .++..+..+++|+.|++++|.+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 345666666666655432211122233345555555555555542 22333344555555555555443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=5.2e-07 Score=77.98 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=48.2
Q ss_pred cccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEe
Q 026180 2 KDVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLN 81 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 81 (242)
++|++|+++.|+..+|. ..+|+.+.+..+ +..++...+.. +.+|+.+++..| ++.....+|.+ .+|+.+.
T Consensus 185 l~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~~aF~~----~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGSQAFLK----TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp EECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECTTTTTT----CTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred eecCCCcceEechhhEe---ecccCEEEeCCc-hheehhhHhhC----CCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 46677777777777765 256666666533 44454444433 455555555443 33233333433 4444444
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeCCCCC
Q 026180 82 LSTNSLQGHIPPTLGNLIVLESLDLSNNK 110 (242)
Q Consensus 82 L~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 110 (242)
+ .+.++......|.++.+|+.+++.+|.
T Consensus 255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 255 L-PNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp E-ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred e-CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 4 223332333444444444444444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=7e-07 Score=77.17 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=105.6
Q ss_pred ccCCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEec
Q 026180 3 DVNANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNL 82 (242)
Q Consensus 3 dLs~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 82 (242)
+|. +.++.|+..+|. .+++|+.+.+..+ +..++...+.. .+|+.+.| .+.++...+.+|.++++|+.+++
T Consensus 209 ~lp-~~l~~I~~~aF~--~~~~L~~l~l~~~-l~~I~~~aF~~-----~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 209 LLP-VTLKEIGSQAFL--KTSQLKTIEIPEN-VSTIGQEAFRE-----SGITTVKL-PNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp ECC-TTCCEECTTTTT--TCTTCCCEECCTT-CCEECTTTTTT-----CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred EeC-CchheehhhHhh--CCCCCCEEecCCC-ccCcccccccc-----CCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence 454 559999999999 8999999999864 56666666543 57899999 45577677889999999999999
Q ss_pred cCCCCC-----CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccccCCCCCCC-CCCcCCccccCC
Q 026180 83 STNSLQ-----GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLTGPIPRGKQ-FNTFGKGSFDGN 156 (242)
Q Consensus 83 ~~n~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~n 156 (242)
.+|.+. ...+..|.++.+|+.+++. +.++......|.+|.+|+.+.+..| ++ .++.... --.+..+.+.+|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSSCCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCCCCCEEEEcCC
Confidence 988775 4666789999999999999 4577667778999999999999665 44 2333221 114555556555
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=1.3e-07 Score=85.25 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=86.0
Q ss_pred cccCCCCCcccCCCCCCCCCCC-CCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCCCC
Q 026180 2 KDVNANNLTYLQDPLLGPVRYP-ALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANLKG 76 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l~~ 76 (242)
+||++|.++......+.. .++ +|++|+++++.- . ...........+++|+.|+|++|.+++. ++..+..+++
T Consensus 117 L~L~~~~i~~~~~~~l~~-~~~~~L~~L~L~~~~~-~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAK-ARADDLETLKLDKCSG-F-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp EEEESCBCCHHHHHHHHH-HHGGGCCEEEEESCEE-E-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred EEeeccEecHHHHHHHHH-hccccCcEEECcCCCC-c-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 567777665433222220 133 499999988762 1 1111222334578999999999988765 4445567899
Q ss_pred CCEEeccCCCCCCC----CCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCC
Q 026180 77 LRTLNLSTNSLQGH----IPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSD 132 (242)
Q Consensus 77 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~ 132 (242)
|++|++++|.+++. ++..+..+++|+.|++++|.+.+ +|..+..+++|+.|+++.
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 99999999998733 33345678999999999998874 566777777777777764
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=7.2e-08 Score=78.67 Aligned_cols=68 Identities=28% Similarity=0.372 Sum_probs=55.5
Q ss_pred cCCCCCCEEeccCCCCCC--CCCcccCCCCCCCEEeCCCCCCCCCCcccccCCC--cccEEecCCCccccCCCC
Q 026180 72 ANLKGLRTLNLSTNSLQG--HIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELT--TLEVFDVSDNLLTGPIPR 141 (242)
Q Consensus 72 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~ 141 (242)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 468899999999999997 3456677899999999999999965 2334344 899999999999987663
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=3.2e-08 Score=76.41 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=78.8
Q ss_pred cccCCC-CCcccCCCCCCC--CCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccC----cchhccCC
Q 026180 2 KDVNAN-NLTYLQDPLLGP--VRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGE----IPTSIANL 74 (242)
Q Consensus 2 ~dLs~N-~i~~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~p~~~~~l 74 (242)
++|++| .|..-....+.. ...++|++|++++|.|...............+.|+.|+|++|.|+.. +...+...
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN 120 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence 688888 886532221110 14578999999999886543323333333457899999999999853 45667777
Q ss_pred CCCCEEec--cCCCCCCCC----CcccCCCCCCCEEeCCCCCCC
Q 026180 75 KGLRTLNL--STNSLQGHI----PPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 75 ~~L~~L~L--~~n~l~~~~----p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+.|++|+| ++|.|+... ...+...++|+.|++++|.+.
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 89999999 889998543 234555689999999999885
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.08 E-value=1.8e-07 Score=84.25 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEcc--C----CCCccC-----cchhccCCCCCCEEeccCCCCCCC
Q 026180 22 YPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILS--N----NSFVGE-----IPTSIANLKGLRTLNLSTNSLQGH 90 (242)
Q Consensus 22 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls--~----n~i~~~-----~p~~~~~l~~L~~L~L~~n~l~~~ 90 (242)
+++|+.|.++.|.++.. ........+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++.
T Consensus 371 ~~~L~~L~~~~~~l~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNA---ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHH---HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred chhHHHHHHhcCCcCHH---HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 56777776666554321 111222335667777776 3 444421 112244556666666655 44443
Q ss_pred CCcccCC-CCCCCEEeCCCCCCCCCCcccc-cCCCcccEEecCCCccc
Q 026180 91 IPPTLGN-LIVLESLDLSNNKLSGQIPQQL-GELTTLEVFDVSDNLLT 136 (242)
Q Consensus 91 ~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~ 136 (242)
.+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 3333333 5666666666666654333333 44566666666666653
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.05 E-value=6.4e-07 Score=80.57 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=36.6
Q ss_pred cccCCCCCcccCCCCCC--CCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCC-CCccCcchhccCCCCCC
Q 026180 2 KDVNANNLTYLQDPLLG--PVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNN-SFVGEIPTSIANLKGLR 78 (242)
Q Consensus 2 ~dLs~N~i~~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~ 78 (242)
++|++|.++......+. ...+++|+.|++++|. ..+...........+++|+.|++++| .+. .++..+..+++|+
T Consensus 161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLE 238 (594)
T ss_dssp EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCS
T ss_pred EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcce
Confidence 45666665443322111 0144566666666554 11111111222233566777777766 222 2444444555555
Q ss_pred EEecc
Q 026180 79 TLNLS 83 (242)
Q Consensus 79 ~L~L~ 83 (242)
.|+++
T Consensus 239 ~L~l~ 243 (594)
T 2p1m_B 239 ELGTG 243 (594)
T ss_dssp EEECS
T ss_pred Ecccc
Confidence 55543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=2.5e-06 Score=72.71 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCCCCcccceeeeE-EEeecCCchhhHHHhhcCccEEEccCCCCccCcchhcc--CCCCCCEEeccC--CCCCCC-----
Q 026180 21 RYPALTYYGFSYYS-LTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIA--NLKGLRTLNLST--NSLQGH----- 90 (242)
Q Consensus 21 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~--~l~~L~~L~L~~--n~l~~~----- 90 (242)
.+|+|+.|.+++|. +.. . .. ..++|+.|+|..+.++...-..+. .+++|+.|+|+. |...+.
T Consensus 170 ~~P~L~~L~L~g~~~l~l-----~-~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSI-----G-KK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp TCTTCCEEEEECCBTCBC-----C-SC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred cCCCCcEEEEeCCCCcee-----c-cc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 56778888777651 111 0 00 145667777766666533333332 566677666642 111111
Q ss_pred CCccc--CCCCCCCEEeCCCCCCCCCCccccc---CCCcccEEecCCCcccc
Q 026180 91 IPPTL--GNLIVLESLDLSNNKLSGQIPQQLG---ELTTLEVFDVSDNLLTG 137 (242)
Q Consensus 91 ~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~L~l~~N~l~~ 137 (242)
+...+ ..+++|+.|++.+|.++...+..+. .+++|+.|+|+.|.++.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 00111 2356666777766666532222222 35566667776666653
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=4.4e-06 Score=63.68 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=49.8
Q ss_pred CccEEEccCCCCccCcchhccCCCCCCEEeccCCC-CCCCCCcccCCC----CCCCEEeCCCCC-CCCCCcccccCCCcc
Q 026180 52 LITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS-LQGHIPPTLGNL----IVLESLDLSNNK-LSGQIPQQLGELTTL 125 (242)
Q Consensus 52 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~p~~~~~l~~L 125 (242)
.|+.||++++.|+..--..+..+++|+.|+|+++. +++..-..+..+ ++|+.|+|+++. +|..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46677777777664444445667777777777764 554333344443 357777777763 653322345567777
Q ss_pred cEEecCCCc
Q 026180 126 EVFDVSDNL 134 (242)
Q Consensus 126 ~~L~l~~N~ 134 (242)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777653
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.69 E-value=0.00011 Score=62.46 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=34.1
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
...|+.+.+..+ +.......|.++.+|+.+.+..+.++......|.++.+|+.+++..+ ++..-...|.+|.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 334444444322 33233334444455555555444444333444444455555554432 3323333444444444443
Q ss_pred c
Q 026180 130 V 130 (242)
Q Consensus 130 l 130 (242)
+
T Consensus 340 i 340 (379)
T 4h09_A 340 Y 340 (379)
T ss_dssp C
T ss_pred E
Confidence 3
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.67 E-value=0.00017 Score=61.80 Aligned_cols=119 Identities=10% Similarity=0.124 Sum_probs=86.4
Q ss_pred CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180 7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS 86 (242)
Q Consensus 7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~ 86 (242)
+.++.++..+|. ...+|+.+.+..+.. .+....+. ....|+.+.+. +.++......|.++.+|+.+++..+
T Consensus 251 ~~v~~i~~~aF~--~c~~L~~i~lp~~~~-~I~~~aF~----~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 251 NGVARIETHAFD--SCAYLASVKMPDSVV-SIGTGAFM----NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp TTEEEECTTTTT--TCSSCCEEECCTTCC-EECTTTTT----TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred CcceEcccceee--ecccccEEecccccc-eecCcccc----cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 456677778888 777888887765433 23444443 36788888885 4566566678888889999988765
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180 87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135 (242)
Q Consensus 87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 135 (242)
++.....+|.++.+|+.+.+..+ ++..-...|.+|.+|+.+++.++..
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 66566677888899999988654 6656667888999999998887654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.45 E-value=0.00048 Score=58.88 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=46.8
Q ss_pred hcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEe
Q 026180 50 SNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFD 129 (242)
Q Consensus 50 ~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~ 129 (242)
..+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++......|.+|.+|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 455666666443 44344556666666666666533 55444556666666666666655 5444455666666666666
Q ss_pred cCC
Q 026180 130 VSD 132 (242)
Q Consensus 130 l~~ 132 (242)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 543
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.45 E-value=4.7e-05 Score=64.79 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred hhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCCCcccC--CCCCCCEEeCCC--CCCCCC-----Ccccc
Q 026180 49 LSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLG--NLIVLESLDLSN--NKLSGQ-----IPQQL 119 (242)
Q Consensus 49 ~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~ 119 (242)
.++.|+.|.|++|.-. .++. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 3456666666665211 1222 2 256666666666655432222222 456666666532 111111 00111
Q ss_pred --cCCCcccEEecCCCccc
Q 026180 120 --GELTTLEVFDVSDNLLT 136 (242)
Q Consensus 120 --~~l~~L~~L~l~~N~l~ 136 (242)
..+++|+.|++.+|.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTTCTTCCEEEEESCTTH
T ss_pred hcCCCCCcCEEeCCCCCCc
Confidence 23566666666666654
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00038 Score=50.18 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=19.2
Q ss_pred CCCEEeCCCCCCCCCCcccccCCCcccEEecCCCccc
Q 026180 100 VLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLLT 136 (242)
Q Consensus 100 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 136 (242)
+|+.|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3455555555555444444555555555555555544
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00022 Score=51.50 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=44.1
Q ss_pred cEEEccCCCCc-cCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeCCCCCCC
Q 026180 54 TAIILSNNSFV-GEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDLSNNKLS 112 (242)
Q Consensus 54 ~~L~Ls~n~i~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 112 (242)
+.++.++++++ ..+|..+ ..+++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888886 3455443 346889999999998666677888899999999999875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.40 E-value=2e-05 Score=60.00 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCC-CccCcchhccCC----CCCCEEeccCCC-CCCCCCcccC
Q 026180 23 PALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNS-FVGEIPTSIANL----KGLRTLNLSTNS-LQGHIPPTLG 96 (242)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~ 96 (242)
..|+.||++++.|+.. +.. .. ..+++|+.|+|++|. |+..-=..+..+ ++|++|+|+++. +++..-..+.
T Consensus 61 ~~L~~LDLs~~~Itd~--GL~-~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI--GFD-HM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGG--GGG-GG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHH--HHH-Hh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3799999999875432 222 11 358899999999995 764433445554 379999999975 8765556678
Q ss_pred CCCCCCEEeCCCCC-CC
Q 026180 97 NLIVLESLDLSNNK-LS 112 (242)
Q Consensus 97 ~l~~L~~L~l~~N~-l~ 112 (242)
.+++|+.|+++++. ++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 89999999999975 44
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.00016 Score=61.84 Aligned_cols=117 Identities=12% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCC
Q 026180 7 NNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNS 86 (242)
Q Consensus 7 N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~ 86 (242)
+.+..|+..+|. ...+|+.+.+. +.+..++...+.. +.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 274 ~~~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~----c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s- 344 (394)
T 4gt6_A 274 DSVVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAG----CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS- 344 (394)
T ss_dssp TTCCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTT----CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-
T ss_pred cccceecCcccc--cccccccccCC-CcccccCceeecC----CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-
Confidence 445678888998 88999999886 3455566666544 789999999765 66566788999999999999765
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEEecCCCcc
Q 026180 87 LQGHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVFDVSDNLL 135 (242)
Q Consensus 87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 135 (242)
++.....+|.++.+|+.+++.++... -..+..+..|+.+.+..|.+
T Consensus 345 v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 345 VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 77566778999999999999988654 24567778888887766554
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.35 E-value=0.00039 Score=58.96 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=78.4
Q ss_pred CcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCC
Q 026180 9 LTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQ 88 (242)
Q Consensus 9 i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 88 (242)
++.|+..+|. ...+|+.+.+..+ +..++...+. .+.+|+.+.+.++.++..-..+|.++.+|+.+.|..+ ++
T Consensus 251 v~~I~~~aF~--~~~~l~~i~l~~~-i~~i~~~aF~----~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 251 VTSIGSFLLQ--NCTALKTLNFYAK-VKTVPYLLCS----GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp CCEECTTTTT--TCTTCCEEEECCC-CSEECTTTTT----TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ccEeCccccc--eeehhcccccccc-ceeccccccc----cccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 5666666666 6666776666532 4444444443 3789999999999998777889999999999999765 66
Q ss_pred CCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCc
Q 026180 89 GHIPPTLGNLIVLESLDLSNNKLSGQIPQQLGELTT 124 (242)
Q Consensus 89 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~ 124 (242)
.....+|.++.+|+.+.+..+ ++..-...|.++..
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred EEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 566778999999999988654 65455566776653
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.27 E-value=0.00034 Score=59.87 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=81.2
Q ss_pred cCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccCCCCccCcchhccCCCCCCEEeccCCCCCCCC
Q 026180 12 LQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSNNSFVGEIPTSIANLKGLRTLNLSTNSLQGHI 91 (242)
Q Consensus 12 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 91 (242)
++..+|. ...+|+.+.+..+ +..++...+.. +.+|+.++|..+ ++..-..+|.++.+|+.+++..+ ++...
T Consensus 288 i~~~~F~--~~~~L~~i~l~~~-i~~I~~~aF~~----c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 288 VPEKTFY--GCSSLTEVKLLDS-VKFIGEEAFES----CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp ECTTTTT--TCTTCCEEEECTT-CCEECTTTTTT----CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ecccccc--ccccccccccccc-cceechhhhcC----CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 5666666 6778888877654 55666665544 789999999754 77566789999999999999877 77677
Q ss_pred CcccCCCCCCCEEeCCCCCCCCCCcccccCCCcccEE
Q 026180 92 PPTLGNLIVLESLDLSNNKLSGQIPQQLGELTTLEVF 128 (242)
Q Consensus 92 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~L 128 (242)
..+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 788999999999999765 33 345678888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=6.4e-05 Score=58.27 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=51.8
Q ss_pred hcCccEEEccCC-CCccC----cchhccCCCCCCEEeccCCCCCCCCCc----ccCCCCCCCEEeCCCCCCCCC----Cc
Q 026180 50 SNLITAIILSNN-SFVGE----IPTSIANLKGLRTLNLSTNSLQGHIPP----TLGNLIVLESLDLSNNKLSGQ----IP 116 (242)
Q Consensus 50 ~~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~----~p 116 (242)
-+.|+.|+|++| .|... +-+.+..-+.|+.|+|++|+|....-. .+..=..|+.|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 346788888775 66521 334455556788888888887643222 233346788888888888632 22
Q ss_pred ccccCCCcccEEecCCC
Q 026180 117 QQLGELTTLEVFDVSDN 133 (242)
Q Consensus 117 ~~~~~l~~L~~L~l~~N 133 (242)
..+..-..|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23445567888888754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.34 E-value=0.0012 Score=51.07 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=6.7
Q ss_pred CCCCEEeccCCCCC
Q 026180 75 KGLRTLNLSTNSLQ 88 (242)
Q Consensus 75 ~~L~~L~L~~n~l~ 88 (242)
+.|+.|+|++|+|+
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44444555555444
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=90.09 E-value=0.041 Score=31.27 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=10.4
Q ss_pred eeeehhhhhhhHhhhhHHhhhc
Q 026180 192 TVLIGYASGTVIGVVLGHIFST 213 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~ 213 (242)
.++.+++.++++++++++.++.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGL 33 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHHHHHH
Confidence 3455555555554444444333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.55 E-value=0.081 Score=30.00 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=8.1
Q ss_pred eeehhhhhhhHhhhhHHh
Q 026180 193 VLIGYASGTVIGVVLGHI 210 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~ 210 (242)
++.+++.++++++++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHH
Confidence 444555444444444433
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=84.71 E-value=0.27 Score=26.90 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.6
Q ss_pred hhhhhhhHh
Q 026180 196 GYASGTVIG 204 (242)
Q Consensus 196 ~~~~~~v~~ 204 (242)
|++++++++
T Consensus 15 GiVvG~v~g 23 (38)
T 2k1k_A 15 AVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeehHHHHH
Confidence 344444333
No 168
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=69.62 E-value=1.1 Score=24.68 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.3
Q ss_pred eeehhhhhhhHhh
Q 026180 193 VLIGYASGTVIGV 205 (242)
Q Consensus 193 ~~~~~~~~~v~~~ 205 (242)
++.++++++++.+
T Consensus 15 I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 15 VIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHH
Confidence 4445555555444
No 169
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=66.95 E-value=2.3 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.4
Q ss_pred eeehhhhhhhHhhhhHH
Q 026180 193 VLIGYASGTVIGVVLGH 209 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~ 209 (242)
+++|.++++++++.+.+
T Consensus 12 ivlGg~~~lll~~glcI 28 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 34444444444443333
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.87 E-value=7.7 Score=25.88 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCCCCcccCCCCCCCCCCCCCcccceeeeEEEeecCCchhhHHHhhcCccEEEccC
Q 026180 5 NANNLTYLQDPLLGPVRYPALTYYGFSYYSLTLSNKGTELEYEKLSNLITAIILSN 60 (242)
Q Consensus 5 s~N~i~~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 60 (242)
.+..++.|...+|. ...+|+.+.+..+ ++.+....+.. +.+|+.+.+.+
T Consensus 4 ~g~~vt~I~~~aF~--~c~~L~~i~iP~~-v~~Ig~~aF~~----C~~L~~i~~~~ 52 (100)
T 2lz0_A 4 EGEPVVGMDKSLFA--GNTVIREITVQPN-IGLLYDGMFSG----CTALEKLILTG 52 (100)
T ss_dssp CCCCCCSSCSCTTT--TCTTCCCEEECTT-SSCCCTTSSTT----CTTCCCEEECC
T ss_pred CCCccCEecHHHhc--CCCCCcEEEcCCc-hheEcHHHHhc----cCCccEEEEcC
Confidence 45678888888888 6777776666532 23333333322 44555555543
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.25 E-value=34 Score=22.56 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=17.8
Q ss_pred CccCcchhccCCCCCCEEeccCCCCCCCCCcccCCCCCCCEEeC
Q 026180 63 FVGEIPTSIANLKGLRTLNLSTNSLQGHIPPTLGNLIVLESLDL 106 (242)
Q Consensus 63 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 106 (242)
++.+-...|.+..+|+.+.+..+ ++..-...|.++.+|+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 33333444445555555544432 22133333444444444443
No 172
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.12 E-value=4.7 Score=25.82 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=8.2
Q ss_pred eeehhhhhhhHhhhhHHhhh
Q 026180 193 VLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~~~ 212 (242)
++.|++++++++.+++++++
T Consensus 13 Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333
No 173
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=45.26 E-value=16 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=12.0
Q ss_pred ehhhhhhhHhhhhHHhhhcch
Q 026180 195 IGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~ 215 (242)
.|.++++|++++.+++++..|
T Consensus 20 gGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTTH
T ss_pred cchhhHHHHHHHHHHHHHcCc
Confidence 455666666666555555544
No 174
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.31 E-value=18 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.089 Sum_probs=11.4
Q ss_pred ehhhhhhhHhhhhHHhhhcch
Q 026180 195 IGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~ 215 (242)
.|.++++|++++.+++++..+
T Consensus 19 GGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 19 GGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCc
Confidence 455555555555555555543
No 175
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=36.08 E-value=20 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=11.7
Q ss_pred ehhhhhhhHhhhhHHhhhcch
Q 026180 195 IGYASGTVIGVVLGHIFSTRK 215 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~~~~~~~ 215 (242)
.|.++++|++++.+++++..|
T Consensus 22 gGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 22 VGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchhHHHHHHHHHHHHHcCc
Confidence 455566666655555555544
No 176
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.85 E-value=13 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=10.7
Q ss_pred eeeehhhhhhhHhhhhHHhhh
Q 026180 192 TVLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~ 212 (242)
.+++++++|++++++++++++
T Consensus 12 iIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 177
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.58 E-value=9.2 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=9.9
Q ss_pred eeeehhhhhhhHhhhhHHhhh
Q 026180 192 TVLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~ 212 (242)
++++++++|++++++++++++
T Consensus 14 iIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444443
No 178
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.79 E-value=19 Score=29.61 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=10.0
Q ss_pred hhhhHhhhhHHhhhcchhhH
Q 026180 199 SGTVIGVVLGHIFSTRKYEW 218 (242)
Q Consensus 199 ~~~v~~~~~~~~~~~~~~~~ 218 (242)
++++++++++.+++.+|++|
T Consensus 319 l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 319 MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 34444444444555555566
No 179
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=27.60 E-value=19 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=6.4
Q ss_pred ehhhhhhhHhhhhHH
Q 026180 195 IGYASGTVIGVVLGH 209 (242)
Q Consensus 195 ~~~~~~~v~~~~~~~ 209 (242)
.|++++.+++++++.
T Consensus 10 aGIVvgdi~~t~~i~ 24 (33)
T 2l34_A 10 AGIVVGDLVLTVLIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHH
Confidence 344444444444333
No 180
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.19 E-value=20 Score=21.03 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=9.3
Q ss_pred eeehhhhhhhHhhhhHHhhh
Q 026180 193 VLIGYASGTVIGVVLGHIFS 212 (242)
Q Consensus 193 ~~~~~~~~~v~~~~~~~~~~ 212 (242)
+++++++|++++++++++++
T Consensus 12 Ii~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444443
No 181
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.62 E-value=29 Score=28.86 Aligned_cols=21 Identities=10% Similarity=0.157 Sum_probs=11.0
Q ss_pred hhhhhHhhhhHHhhhcchhhH
Q 026180 198 ASGTVIGVVLGHIFSTRKYEW 218 (242)
Q Consensus 198 ~~~~v~~~~~~~~~~~~~~~~ 218 (242)
+++++++++++.+++.+|++|
T Consensus 342 ~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 342 VLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 344444555555556666666
Done!