BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026183
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 294 bits (752), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 173/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L ++D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 308
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 293 bits (750), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 308
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 293 bits (750), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 293 bits (749), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 308
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 292 bits (747), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/225 (64%), Positives = 171/225 (76%), Gaps = 1/225 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGN 224
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN N
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSN 308
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 174/223 (78%), Gaps = 1/223 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
+K A+E ACP VVSC+D+L +A+E SV+L+GGPSWT LLGRRDS TAN AN ++PSP
Sbjct: 84 IKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPI 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
++L + F VGLN N DLVALSGAHTFGRA+C F+ RLFNF+ TGNPDPTL++T L
Sbjct: 144 ESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
L+QLCPQ G+ S +TNLD++TP+ FDN YF+NL++ GLLQSDQELFST G+ TI IV
Sbjct: 203 STLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIV 262
Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG 223
F NQ FF++F SMI MGN+ PLTG+ GEIRL+C++VNG
Sbjct: 263 TSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNG 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/226 (64%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG H+FG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 308
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 290 bits (741), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 146/226 (64%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 84 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 143
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCR RL+NF+NTG PDPTL+ T+L
Sbjct: 144 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 204 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 263
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGNS 225
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN NS
Sbjct: 264 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 309
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 290 bits (741), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/223 (65%), Positives = 170/223 (76%), Gaps = 1/223 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVALSG HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 169/223 (75%), Gaps = 1/223 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
MKAAVE ACPR VSCAD+LTIAA+QSV L+GGPSW LGRRDS A LAN NLP+PF
Sbjct: 83 MKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
TL +LK SFRNVGLN + DLVAL G HTFG+ QCRF RL+NF+NTG PDPTL+ T+L
Sbjct: 143 FTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYL 202
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA-DTIDI 179
Q LR LCP GN S L + D+ TP +FDNKY+ NL +KGL+QSDQELFS+P A DTI +
Sbjct: 203 QTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPL 262
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
V F + FF +FV +M RMGN+ PLTG +G+IRLNCR VN
Sbjct: 263 VRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 269 bits (687), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/223 (65%), Positives = 166/223 (74%), Gaps = 1/223 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
+K AVE +CP VSCADIL IAAE + L GGP W LGRRDS TANRTLANQNLP+PF
Sbjct: 83 IKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
L +LKASF GLN DLV LSG HTFGRA+C F RL+NF+NTGNPDPTL+ T+L
Sbjct: 143 FNLTQLKASFAVQGLN-TLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYL 201
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
+ LR CPQ G LTNLD++TP+ FDN+Y+SNL GLLQSDQELFSTPGADTI IV
Sbjct: 202 EVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIV 261
Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG 223
N F NQ FF +F SMI+MGN+ LTG+EGEIRL C VNG
Sbjct: 262 NSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 167/223 (74%), Gaps = 1/223 (0%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
+K A+E ACP VVSC D+L +A++ SV+LSGGPSWT LGRRD+ TAN+ AN ++PSP
Sbjct: 85 IKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPT 144
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
L + + F VGLN N DLVALSGAHTFGRA C FS RLFNF+ GNPDPTL+ T L
Sbjct: 145 QGLSNITSKFSAVGLNTN-DLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLL 203
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
L++LCPQ G GS TNLD++TP+ FDN YF+NL++ GLLQSDQELFST G+ TI IV
Sbjct: 204 STLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIV 263
Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNG 223
F NQ FF++F SMI MGN+ PLTG+ GEIRL+C++ NG
Sbjct: 264 TSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTNG 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/224 (54%), Positives = 150/224 (66%), Gaps = 6/224 (2%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
+KAAVE ACP VVSCADILT+AA SV LSGGP W LGR+D AN+ AN NLPSPF
Sbjct: 80 IKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSAN-NLPSPF 138
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
+ LD + A F V LN D+VALSGAHTFG+A+C FS RLFNF GNPD TL+ + L
Sbjct: 139 EPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLL 197
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGA--DTID 178
L+ +CP GGN ++ LD +T + FDN YF NL KGLL SDQ LFS+ A T
Sbjct: 198 SNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKK 257
Query: 179 IVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
+V + ++Q+ FF+ F +MIRMGN+ G GE+R NCR +N
Sbjct: 258 LVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 299
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 140/222 (63%), Gaps = 10/222 (4%)
Query: 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPF 60
+K+ VE CP VVSCADIL +AA SV GG SW LLGRRDS TA+ + AN +LP+PF
Sbjct: 83 IKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPF 142
Query: 61 DTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFL 120
L L ++F N G +LV LSGAHT G+AQC F R++N +N +D T+
Sbjct: 143 FNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQCTAFRTRIYNESN-------IDPTYA 194
Query: 121 QQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDIV 180
+ L+ CP G + L+ DVTTPN FDN Y+ NLRN+KGLL SDQ+LF+ G T V
Sbjct: 195 KSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLFN--GVSTDSQV 252
Query: 181 NVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
+ N A F F +MI+MGNL PLTG G+IR NCR+ N
Sbjct: 253 TAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 125/223 (56%), Gaps = 5/223 (2%)
Query: 2 KAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFD 61
K+AVE ACP+ VSCADIL AA S L+G ++ GRRD + + AN +PSP
Sbjct: 84 KSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLF 143
Query: 62 TLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQ 121
+L SF N L + ++V LSGAH+ G A C F+ RL+NFN+ DPTL ++
Sbjct: 144 NATQLINSFANKTLTAD-EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAA 202
Query: 122 QLRQLCPQGGN--GSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTIDI 179
LR CP + +LD+ TP+V DN Y++ ++ GLL SDQ L + A+
Sbjct: 203 LLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTE--ANLSAA 260
Query: 180 VNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222
V N A+ F +M++MG ++ LTG +GEIR NC VN
Sbjct: 261 VKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 1 MKAAVEKAC-PRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRT-ANRTLANQNLPS 58
++ +E+ C VVSC+DIL +AA SV +SGGP + LGRRDSR+ A+ +LP
Sbjct: 91 IRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPG 150
Query: 59 PFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDAT 118
P + L A D DLV +SG HT G A C F RLF PDPT+ T
Sbjct: 151 PSSNVQSLLAL-LGRLGLDATDLVTISGGHTIGLAHCSSFEDRLFP-----RPDPTISPT 204
Query: 119 FLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFSTPGADTID 178
FL +L++ CP G T LDV TPNVFDNKY+ +L NR+GL SDQ+LF+ A T
Sbjct: 205 FLSRLKRTCPAKGTDR-RTVLDVRTPNVFDNKYYIDLVNREGLFVSDQDLFTN--AITRP 261
Query: 179 IVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNC 218
IV F ++Q FF+ F S+ +MG ++ T ++GE+R NC
Sbjct: 262 IVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 13 VSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLP--SPFDTLDRLKASF 70
V+ AD+ +A+ ++ +GGP GR D + LP P L+ F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+GLND ++VALSGAHT GR++ + + G P+ + + P
Sbjct: 147 YRMGLNDK-EIVALSGAHTLGRSRP--------DRSGWGKPE--------TKYTKDGPGA 189
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRNRKG----LLQSDQELFSTPGADTIDIVNVFRKN 186
G T + FDN YF +++ R+ +L +D LF P + +
Sbjct: 190 PGGQSWTAQWLK----FDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKV--YAEKYAAD 243
Query: 187 QAAFFKSFVTSMIRMGNL 204
AFFK + + ++ NL
Sbjct: 244 PEAFFKDYAEAHAKLSNL 261
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKE-------------------------------ASG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 185
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 186 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 238
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 239 EDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 173
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 226
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 173
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 226
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 173
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 226
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
++S AD +A +V ++GGP GR D LP D L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL D D+VALSG HT G A G
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER-------------------------------SG 173
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNLRN--RKGLLQ--SDQELFSTPGADTIDIVNVFRKN 186
G +N P +FDN YF+ L + ++GLLQ SD+ L S P +V+ + +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRP--LVDKYAAD 226
Query: 187 QAAFFKSFVTSMIRMGNL 204
+ AFF + + ++ L
Sbjct: 227 EDAFFADYAEAHQKLSEL 244
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 51/200 (25%)
Query: 12 VVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASF- 70
+VS AD +A +V ++GGP GR D LP D L+ F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 71 RNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQG 130
+ +GL+D D+VALSG HT G A G
Sbjct: 146 KAMGLSDQ-DIVALSGGHTIGAAHKER-------------------------------SG 173
Query: 131 GNGSVLTNLDVTTPNVFDNKYFSNL--RNRKGLLQ--SDQELFSTPGADTI--DIVNVFR 184
G +N P +FDN YF+ L + GLLQ SD+ L + D++ +V +
Sbjct: 174 FEGPWTSN-----PLIFDNSYFTELLTGEKDGLLQLPSDKALLT----DSVFRPLVEKYA 224
Query: 185 KNQAAFFKSFVTSMIRMGNL 204
++ FF + + +++ L
Sbjct: 225 ADEDVFFADYAEAHLKLSEL 244
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
++K P++ S AD+ +AA ++ GGP+ GR D++ + + LP T
Sbjct: 78 LKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 136
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRF 97
++ FR +G ND + VAL GAHT G F
Sbjct: 137 HVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 168
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
++K P++ S AD+ +AA ++ GGP+ GR D++ + + LP T
Sbjct: 79 LKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRF 97
++ FR +G ND + VAL GAHT G F
Sbjct: 138 HVREVFRRLGFNDQ-ETVALIGAHTCGECHIEF 169
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
++K P++ S AD+ +AA ++ GGP+ GR D++ + + LP T
Sbjct: 79 LKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQS 137
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRF 97
++ FR +G ND + VAL GAHT G F
Sbjct: 138 HVREVFRRLGFNDQ-ETVALIGAHTCGETHIEF 169
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAHT G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK----------NSGYEGPW---------- 191
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
PNVFDN ++ NL N +L +D
Sbjct: 192 ----------------TANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VALSGAHT G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALSGAHTLGKTHLK----------NSGYEGPW---------- 191
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRN-----------------RKGLLQ--SD 165
NVFDN ++ NL N + G LQ +D
Sbjct: 192 ----------------TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAHT G+ + N+G P DA
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK----------NSGYEGP-WDA------- 193
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
T NVFDN ++ NL N +L +D
Sbjct: 194 ------------------TNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 78/216 (36%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAHT G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK----------NSGYEGPW---------- 191
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRN-----------------RKGLLQ--SD 165
NVFDN ++ NL N + G LQ +D
Sbjct: 192 ----------------TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAHT G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK----------NSGYEGPW---------- 191
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVFDN ++ NL N +L +D
Sbjct: 192 ----------------TANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 94 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 151
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 152 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 194
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 195 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 234
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 235 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+Y+ NL N +L +D
Sbjct: 193 --------------------NVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 94 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 151
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 152 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 182
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 88 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 145
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 176
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP D
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGP----------- 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
GG + NVF N+++ NL N +L +D
Sbjct: 193 -----GGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGP----------- 190
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
GG + NVF N+++ NL N +L +D
Sbjct: 191 -----GGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGP----------- 187
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
GG + NVF N+++ NL N +L +D
Sbjct: 188 -----GGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYE------------- 190
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
PQG NVF N+++ NL N +L +D
Sbjct: 191 --GPQG-----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGP----------- 190
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
GG + NVF N+++ NL N +L +D
Sbjct: 191 -----GGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALKGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 93 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 150
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P
Sbjct: 151 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGP----------- 188
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
GG + NVF N+++ NL N +L +D
Sbjct: 189 -----GGAAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 233
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 234 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYE------------- 185
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
PQG NVF N+++ NL N +L +D
Sbjct: 186 --GPQG-----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTELK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P + S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFPWI-SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPYGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 98 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 155
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 156 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 198
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 199 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 238
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 239 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 62/216 (28%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 98 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 155
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G
Sbjct: 156 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGY-------------- 190
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
+GG + NVF N+++ NL N +L +D
Sbjct: 191 ----EGGGAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 236
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 237 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 21 IAAEQSVALS---GGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLND 77
IA +VALS G P GR+ A + + +P PF T+D++ A + G D
Sbjct: 109 IAFAGAVALSNCPGAPQMNFFTGRK---PATQPAPDGLVPEPFHTVDQIIARVNDAGEFD 165
Query: 78 NFDLVALSGAHT 89
+LV + AH+
Sbjct: 166 ELELVWMLSAHS 177
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDYDKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
V+ D + A V+ G P LGR + A + + +P PF T+D++ A
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPE---ATQAAPDGLVPEPFHTIDQVLARML 160
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G D + V L AH+ A
Sbjct: 161 DAGGFDEIETVXLLSAHSIAAA 182
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 62/216 (28%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 93 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 150
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G
Sbjct: 151 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGY-------------- 185
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
+GG + NVF N+++ NL N +L +D
Sbjct: 186 ----EGGGAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 231
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 232 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 192
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKGLLQ-------------------SD 165
NVF N+++ NL N L+ +D
Sbjct: 193 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTD 232
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 233 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 62/216 (28%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGY-------------- 184
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
+GG + NVF N+++ NL N +L +D
Sbjct: 185 ----EGGGAN----------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 230
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 231 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPFGAAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDMDKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGAAN------ 195
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 196 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 235
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 236 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3TIX|B Chain B, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|D Chain D, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 458
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 70 FRNVGLNDNFDLVALSGAHTFGRAQCRFF----SVRLFNFNNTG-------NPDPTLDAT 118
F NV L D+FD L R C+FF S+ L + N++ N +P T
Sbjct: 240 FLNVSLEDDFD--QLQFLTLAKRKSCKFFLFGLSLPLKSPNDSHVGTDFKKNNEPLDKLT 297
Query: 119 FLQQLRQLCPQGGNGSVLTNLDVTTPNVFD 148
+ Q LR + P+GG SV + + TP + +
Sbjct: 298 YSQYLRPMFPKGGVVSVTLSALIKTPRLLE 327
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124
++ F+ + +ND ++VAL GAH G+ + N+G P A
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK----------NSGYEGPWGCAN------ 197
Query: 125 QLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG-------------------LLQSD 165
NVF N+++ NL N +L +D
Sbjct: 198 --------------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTD 237
Query: 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM 201
L P + IV + +Q FFK F + ++
Sbjct: 238 YSLIQDP--KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 152
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 98 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 155
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 156 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 98 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 155
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 156 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLD 64
+ K P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 65 RLKASFRNVGLNDNFDLVALSGAHTFGRAQCR 96
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLD 116
P P + ++ +F +G+ND + ++G H FG+ +V+ N P P
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHG---AVKGSNI----GPAPEAA 313
Query: 117 ATFLQQLRQLCPQG-GNG-----SVLTNLDVTTPNVFDNKYFSNLRNRKGLLQSDQELFS 170
+Q L G GNG S L + TP + N Y +L N L + S
Sbjct: 314 DLGMQGLGWHNSVGDGNGPNQMTSGLEVIWTKTPTKWSNGYLESLINNNWTL-----VES 368
Query: 171 TPGADTIDIVN 181
GA + VN
Sbjct: 369 PAGAHQWEAVN 379
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V+L +H+ A
Sbjct: 154 DAGFS-PVEVVSLLASHSIAAA 174
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 21 IAAEQSVALS---GGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLND 77
IA +VALS G P GR A + + +P PF T+D++ + G D
Sbjct: 116 IAFAGAVALSNCPGAPQMNFFTGRA---PATQPAPDGLVPEPFHTVDQIINRVNDAGEFD 172
Query: 78 NFDLVALSGAHT 89
+LV + AH+
Sbjct: 173 ELELVXMLSAHS 184
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVYLLASHSIAAA 174
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 21 IAAEQSVALS---GGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLND 77
IA +VALS G P GR A + + +P PF T+D++ + G D
Sbjct: 116 IAFAGAVALSNCPGAPQMNFFTGRA---PATQPAPDGLVPEPFHTVDQIINRVNDAGEFD 172
Query: 78 NFDLVALSGAHT 89
+LV + AH+
Sbjct: 173 ELELVWMLSAHS 184
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 21 IAAEQSVALS---GGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLND 77
IA +VALS G P GR A + + +P PF T+D++ + G D
Sbjct: 116 IAFAGAVALSNCPGAPQMNFFTGRA---PATQPAPDGLVPEPFHTVDQIINRVNDAGEFD 172
Query: 78 NFDLVALSGAHT 89
+LV + AH+
Sbjct: 173 ELELVFMLSAHS 184
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 13 VSCADILTIAAEQSVA-LSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFR 71
+S D + A V+ GG LGR D+ A+ + +P PFD++D + A
Sbjct: 97 ISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSILARMG 153
Query: 72 NVGLNDNFDLVALSGAHTFGRA 93
+ G + ++V L +H+ A
Sbjct: 154 DAGFS-PVEVVWLLASHSIAAA 174
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPT-L 115
P P ++ +F + +ND + ++G HTFG+ + N P+ +
Sbjct: 214 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPAS-----NVGAEPEAAGI 268
Query: 116 DATFLQQLRQLCPQGGNGSVLTNLDV---TTPNVFDNKYFSNL 155
+A L G ++ + L+V TTP + + +F NL
Sbjct: 269 EAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENL 311
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPT-L 115
P P ++ +F + +ND + ++G HTFG+ + N P+ +
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPAS-----NVGAEPEAAGI 302
Query: 116 DATFLQQLRQLCPQGGNGSVLTNLDV---TTPNVFDNKYFSNL 155
+A L G ++ T L+V TTP + + +F NL
Sbjct: 303 EAQGLGWKSAYRTGKGADAITTGLEVTWTTTPTQWSHNFFENL 345
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPT-L 115
P P ++ +F + +ND + ++G HTFG+ + N P+ +
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTHGAGPAS-----NVGAEPEAAGI 302
Query: 116 DATFLQQLRQLCPQGGNGSVLTNLDV---TTPNVFDNKYFSNL 155
+A L G ++ T L+V TTP + + +F NL
Sbjct: 303 EAQGLGWKSAYRTGKGADAITTGLEVTWTTTPTQWSHNFFENL 345
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +FR + +ND + G HTFG+
Sbjct: 242 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTH 279
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +FR + +ND + G HTFG+
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTH 276
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +FR + +ND + G HTFG+
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTH 276
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 28.5 bits (62), Expect = 3.5, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P + ++ +F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P + ++ +F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P ++ +F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGKTH 285
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P + ++ +F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P + ++ +F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPT-- 114
P P T ++ +F + +ND + +G HT G+ + L P+P
Sbjct: 231 PDPLKTAHDVRVTFARMAMNDEETVALTAGGHTVGKCHGNGNAALL-------GPEPEGA 283
Query: 115 -LDATFLQQLRQLCPQGGNGSVLTNLD---VTTPNVFDNKYFSNLRNRKGLLQSDQELFS 170
++ L + + G +V + L+ P +DN YF+ L D EL
Sbjct: 284 DVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCS-----LNYDWELKK 338
Query: 171 TP-GADTIDIVN 181
P GA + +N
Sbjct: 339 NPAGAWQWEPIN 350
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 57 PSPFDTLDRLKASFRNVGLNDNFDLVALSGAHTFGRAQ 94
P P + ++ +F +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFGKVH 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,983,727
Number of Sequences: 62578
Number of extensions: 283607
Number of successful extensions: 718
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 161
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)