Query 026183
Match_columns 242
No_of_seqs 118 out of 1229
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 5E-76 1.1E-80 533.7 16.4 218 1-222 102-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.4E-72 3E-77 509.3 17.7 217 1-221 82-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 3.4E-52 7.3E-57 373.2 16.8 174 4-220 81-258 (289)
4 PF00141 peroxidase: Peroxidas 100.0 1.3E-52 2.9E-57 367.1 9.1 169 1-186 62-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 9.4E-50 2E-54 353.2 16.9 164 4-207 80-251 (253)
6 PLN02879 L-ascorbate peroxidas 100.0 1.6E-49 3.5E-54 350.3 15.0 160 5-207 85-248 (251)
7 cd00692 ligninase Ligninase an 100.0 7E-49 1.5E-53 357.4 17.4 178 1-226 93-291 (328)
8 PLN02364 L-ascorbate peroxidas 100.0 6.2E-49 1.4E-53 347.0 15.0 160 5-207 84-248 (250)
9 cd00649 catalase_peroxidase_1 100.0 1.7E-48 3.6E-53 360.7 18.2 199 4-212 121-401 (409)
10 TIGR00198 cat_per_HPI catalase 100.0 7.3E-47 1.6E-51 369.4 18.2 198 4-212 131-408 (716)
11 PRK15061 catalase/hydroperoxid 100.0 2E-43 4.4E-48 343.8 17.9 199 4-212 133-414 (726)
12 cd00314 plant_peroxidase_like 100.0 1.6E-43 3.5E-48 313.5 14.6 164 1-203 70-255 (255)
13 cd08201 plant_peroxidase_like_ 100.0 2.2E-36 4.9E-41 267.0 14.1 158 11-203 96-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.6E-30 3.4E-35 232.6 13.5 161 4-205 83-296 (297)
15 COG0376 KatG Catalase (peroxid 100.0 3.1E-28 6.8E-33 229.0 14.5 194 5-208 147-421 (730)
16 TIGR00198 cat_per_HPI catalase 99.9 4.1E-26 8.9E-31 223.9 13.9 161 4-206 501-710 (716)
17 PRK15061 catalase/hydroperoxid 99.9 1.4E-25 3.1E-30 219.2 13.7 154 12-206 522-722 (726)
18 COG0376 KatG Catalase (peroxid 99.1 3.3E-10 7.2E-15 108.0 8.5 158 7-205 521-725 (730)
19 PTZ00411 transaldolase-like pr 76.0 43 0.00093 31.2 11.2 48 30-78 180-231 (333)
20 PF11895 DUF3415: Domain of un 68.7 6 0.00013 29.3 3.0 32 189-224 2-33 (80)
21 PRK12309 transaldolase/EF-hand 65.4 94 0.002 29.6 11.1 48 30-78 174-225 (391)
22 PRK05269 transaldolase B; Prov 63.8 78 0.0017 29.3 10.1 50 29-78 169-221 (318)
23 TIGR00874 talAB transaldolase. 40.7 1.1E+02 0.0024 28.3 7.1 49 29-78 167-219 (317)
24 PRK12346 transaldolase A; Prov 32.3 56 0.0012 30.3 3.7 49 29-78 168-220 (316)
25 cd00957 Transaldolase_TalAB Tr 29.1 39 0.00085 31.2 2.2 48 30-78 168-219 (313)
26 PLN02161 beta-amylase 28.0 77 0.0017 31.4 4.0 34 179-216 234-272 (531)
27 PF00043 GST_C: Glutathione S- 24.4 1E+02 0.0022 21.7 3.3 24 9-32 51-74 (95)
28 PRK13859 type IV secretion sys 23.1 41 0.00089 22.9 0.8 31 18-48 9-42 (55)
29 TIGR01568 A_thal_3678 uncharac 22.0 40 0.00087 24.0 0.6 21 182-205 5-25 (66)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=5e-76 Score=533.70 Aligned_cols=218 Identities=46% Similarity=0.776 Sum_probs=206.3
Q ss_pred ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD 80 (242)
Q Consensus 1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e 80 (242)
||++||++||++|||||||+||||+||+++|||.|+|++||+|+.++...++. +||.|+.++++|++.|+++||+.+ |
T Consensus 102 iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~-D 179 (324)
T PLN03030 102 AKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ-D 179 (324)
T ss_pred HHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH-H
Confidence 79999999999999999999999999999999999999999999998777664 899999999999999999999999 9
Q ss_pred hHhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccC
Q 026183 81 LVALSGAHTFGRAQCRFFSVRLFNFNNTG-NPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRK 159 (242)
Q Consensus 81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~ 159 (242)
||+||||||||++||.+|.+|||||.|++ .+||+||+.|+..|+..||..++....++||+.||.+|||+||++|+.++
T Consensus 180 lVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~r 259 (324)
T PLN03030 180 LVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGR 259 (324)
T ss_pred heeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcC
Confidence 99999999999999999999999999875 58999999999999999996433334678999999999999999999999
Q ss_pred ccccchhhhhcCCchhHHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 026183 160 GLLQSDQELFSTPGADTIDIVNVFRKNQ----AAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVN 222 (242)
Q Consensus 160 glL~SD~~L~~d~~~~t~~~V~~yA~d~----~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~N 222 (242)
|+|+|||+|+.|+ +|+.+|++||.|+ ++|+++|++||+|||+|+|+||.+|||||+|+.+|
T Consensus 260 GlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 260 GILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999 9999999999874 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.4e-72 Score=509.25 Aligned_cols=217 Identities=55% Similarity=0.921 Sum_probs=208.6
Q ss_pred ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD 80 (242)
Q Consensus 1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e 80 (242)
||++||++||++|||||||+||||+||+++|||.|+|++||+|+.++....+ ..||.|+.++++|++.|+++||+++ |
T Consensus 82 iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~-d 159 (298)
T cd00693 82 IKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT-D 159 (298)
T ss_pred HHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH-H
Confidence 6999999999999999999999999999999999999999999998876655 6899999999999999999999999 9
Q ss_pred hHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccCc
Q 026183 81 LVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG 160 (242)
Q Consensus 81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~g 160 (242)
||+|+||||||++||.+|.+|||||+|++.+||+|++.|+..|+..||...+..+.++||+.||..|||+||++|+.++|
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~g 239 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRG 239 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhccc
Confidence 99999999999999999999999999998899999999999999999976555677899999999999999999999999
Q ss_pred cccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 026183 161 LLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRV 221 (242)
Q Consensus 161 lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~ 221 (242)
+|+||++|+.|+ +|+++|++||.|++.|+++|++||+||++|+|+||.+||||++|+.+
T Consensus 240 lL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 240 LLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CccCCHHhccCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999 99999999999999999999999999999999999999999999875
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.4e-52 Score=373.21 Aligned_cols=174 Identities=30% Similarity=0.528 Sum_probs=157.2
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcchhHh
Q 026183 4 AVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVA 83 (242)
Q Consensus 4 ~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~Va 83 (242)
.+++++| +|||||||+||||+||+++|||.|+|++||+|+.++.+ +.+||.|+.++++|++.|+++||+++ |||+
T Consensus 81 ~iK~~~~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~-D~Va 155 (289)
T PLN02608 81 PVKAKHP-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDK-DIVA 155 (289)
T ss_pred HHHHHcC-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHH-HHhh
Confidence 3445565 89999999999999999999999999999999998863 46799999999999999999999999 9999
Q ss_pred hhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhcc--Ccc
Q 026183 84 LSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNR--KGL 161 (242)
Q Consensus 84 L~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~--~gl 161 (242)
|+||||||++||. |+ +|.|. +..||.+|||+||++++.+ +|+
T Consensus 156 LsGAHTiG~ahc~----r~-g~~g~-------------------------------~~~Tp~~FDN~Yy~~ll~~~~~gl 199 (289)
T PLN02608 156 LSGGHTLGRAHPE----RS-GFDGP-------------------------------WTKEPLKFDNSYFVELLKGESEGL 199 (289)
T ss_pred hcccccccccccc----CC-CCCCC-------------------------------CCCCCCccChHHHHHHHcCCcCCc
Confidence 9999999999994 55 44221 1268999999999999998 788
Q ss_pred --ccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccc
Q 026183 162 --LQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRR 220 (242)
Q Consensus 162 --L~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~ 220 (242)
|+||++|+.|+ +|+.+|+.||.|+++|+++|++||+||++|+|+||.+||+.+.-+.
T Consensus 200 l~L~SD~~L~~d~--~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 200 LKLPTDKALLEDP--EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTST 258 (289)
T ss_pred cccccCHhhhcCh--hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCcc
Confidence 79999999999 9999999999999999999999999999999999999999996544
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-52 Score=367.13 Aligned_cols=169 Identities=51% Similarity=0.857 Sum_probs=152.9
Q ss_pred ChHHHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcch
Q 026183 1 MKAAVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFD 80 (242)
Q Consensus 1 iK~~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e 80 (242)
||+++|++||++|||||||+|||++||+.+|||.|+|++||+|+.++...++ .+||.|..++++|++.|+++||+++ |
T Consensus 62 ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~-e 139 (230)
T PF00141_consen 62 IKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAE-E 139 (230)
T ss_dssp HHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HH-H
T ss_pred HHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchh-h
Confidence 6999999999999999999999999999999999999999999999998776 6899999999999999999999999 9
Q ss_pred hHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccCc
Q 026183 81 LVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG 160 (242)
Q Consensus 81 ~VaL~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~g 160 (242)
||||+||||||++||.+|. ||| + .+||.|++.|+.. .| ..++++ .+++| ||.+|||+||++|+.++|
T Consensus 140 ~VaLsGaHTiG~~~c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~g 206 (230)
T PF00141_consen 140 MVALSGAHTIGRAHCSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRG 206 (230)
T ss_dssp HHHHHGGGGSTEESGGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEE
T ss_pred hcceecccccccceecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCC
Confidence 9999999999999999999 999 5 5799999999988 99 333333 77888 999999999999999999
Q ss_pred cccchhhhhcCCchhHHHHHHHHhhC
Q 026183 161 LLQSDQELFSTPGADTIDIVNVFRKN 186 (242)
Q Consensus 161 lL~SD~~L~~d~~~~t~~~V~~yA~d 186 (242)
+|+||++|+.|+ +|+.+|++||+|
T Consensus 207 ll~SD~~L~~d~--~t~~~V~~yA~d 230 (230)
T PF00141_consen 207 LLPSDQALLNDP--ETRPIVERYAQD 230 (230)
T ss_dssp EEHHHHHHHHST--THHHHHHHHHHT
T ss_pred cCHHHHHHhcCH--HHHHHHHHHhcC
Confidence 999999999999 999999999986
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=9.4e-50 Score=353.19 Aligned_cols=164 Identities=30% Similarity=0.500 Sum_probs=149.7
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcchhHh
Q 026183 4 AVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVA 83 (242)
Q Consensus 4 ~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~Va 83 (242)
+++++|| +|||||||+||||+||+.+|||.|+|++||+|+.++....++.+||.|..++++|++.|+++||+.+ |||+
T Consensus 80 ~iK~~~~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~-d~Va 157 (253)
T cd00691 80 PIKKKYP-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQ-EIVA 157 (253)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHH-HHHH
Confidence 3445676 8999999999999999999999999999999999998766777899999999999999999999999 9999
Q ss_pred hhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccCc---
Q 026183 84 LSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG--- 160 (242)
Q Consensus 84 L~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~g--- 160 (242)
|+||||||++||.. ++|.|. |..||.+|||+||++|+.++|
T Consensus 158 LsGaHTiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~ 201 (253)
T cd00691 158 LSGAHTLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLP 201 (253)
T ss_pred hcccceeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccC
Confidence 99999999999953 244321 115899999999999999999
Q ss_pred -----cccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 026183 161 -----LLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPL 207 (242)
Q Consensus 161 -----lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~ 207 (242)
+|+||+.|+.|+ +|+.+|+.||.|+++|+++|++||+||++|+|.
T Consensus 202 ~~~~~~L~sD~~L~~d~--~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 202 TPGLLMLPTDKALLEDP--KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cCcceechhhHHHHcCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999 999999999999999999999999999999985
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-49 Score=350.34 Aligned_cols=160 Identities=31% Similarity=0.571 Sum_probs=144.3
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhh
Q 026183 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVAL 84 (242)
Q Consensus 5 le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL 84 (242)
++++. ++|||||||+|||++||+.+|||.|+|++||+|+.++.+ +.+||.|+.++++|++.|++|||+++ |||||
T Consensus 85 iK~~~-~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~-dlVAL 159 (251)
T PLN02879 85 IKELF-PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDK-DIVAL 159 (251)
T ss_pred HHHHc-CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHH-HHeee
Confidence 34445 479999999999999999999999999999999998854 46799999999999999999999999 99999
Q ss_pred hcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhcc--Ccc-
Q 026183 85 SGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNR--KGL- 161 (242)
Q Consensus 85 ~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~--~gl- 161 (242)
+||||||++||. | ++|.|. .| .||.+|||+||++|+.+ +|+
T Consensus 160 sGaHTiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll 203 (251)
T PLN02879 160 SGGHTLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLL 203 (251)
T ss_pred eccccccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCc
Confidence 999999999995 3 344331 12 68999999999999998 887
Q ss_pred -ccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 026183 162 -LQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPL 207 (242)
Q Consensus 162 -L~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~ 207 (242)
|+||++|+.|+ +|+++|++||.|+++|+++|++||+||++|++.
T Consensus 204 ~L~SD~aL~~D~--~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 204 QLPTDKALLDDP--LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred cchhhHHHhcCC--cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 67999999999 999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7e-49 Score=357.44 Aligned_cols=178 Identities=29% Similarity=0.445 Sum_probs=159.8
Q ss_pred ChHHHHhhCCCCCCHHHHHHHHHHHHHHHh-CCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcc
Q 026183 1 MKAAVEKACPRVVSCADILTIAAEQSVALS-GGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNF 79 (242)
Q Consensus 1 iK~~le~~cp~~VScADiialAa~~Av~~~-GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~ 79 (242)
||..+|+.| |||||||+||||+||+.| |||.|+|++||+|++++.+ +..||.|+.++++|++.|+++||+++
T Consensus 93 lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~~~- 165 (328)
T cd00692 93 LRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFSPD- 165 (328)
T ss_pred HHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHH-
Confidence 588999998 999999999999999965 9999999999999998864 45799999999999999999999999
Q ss_pred hhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHh-cc
Q 026183 80 DLVALSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLR-NR 158 (242)
Q Consensus 80 e~VaL~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~-~~ 158 (242)
|||+|+||||||++|. .||+++ ..++| .||.+|||+||++++ .+
T Consensus 166 E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~~ 210 (328)
T cd00692 166 ELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETLLKG 210 (328)
T ss_pred HHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHHHcC
Confidence 9999999999999983 356654 13577 699999999999987 45
Q ss_pred Cc-------------------cccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 026183 159 KG-------------------LLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPLTGNEGEIRLNCR 219 (242)
Q Consensus 159 ~g-------------------lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~ 219 (242)
++ +|+||++|+.|+ +|+.+|++||+||++|+++|++||+||++|||. +..+.+|+
T Consensus 211 ~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~--~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs 284 (328)
T cd00692 211 TAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP--RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCS 284 (328)
T ss_pred CCCCCccccccccccCccccccccchHHHhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCc
Confidence 55 499999999999 999999999999999999999999999999986 44888999
Q ss_pred cccCCCc
Q 026183 220 RVNGNSN 226 (242)
Q Consensus 220 ~~N~~~~ 226 (242)
.|++...
T Consensus 285 ~v~p~~~ 291 (328)
T cd00692 285 DVIPPPK 291 (328)
T ss_pred ccCCCCC
Confidence 9997654
No 8
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.2e-49 Score=346.99 Aligned_cols=160 Identities=33% Similarity=0.557 Sum_probs=143.4
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHH-cCCCCcchhHh
Q 026183 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRN-VGLNDNFDLVA 83 (242)
Q Consensus 5 le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~~e~Va 83 (242)
+++++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ ...||.|+.++++|++.|++ +||+++ |||+
T Consensus 84 ik~~~-~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~-d~Va 158 (250)
T PLN02364 84 IREQF-PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQMGLSDK-DIVA 158 (250)
T ss_pred HHHHc-CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHhcCCCHH-Hhee
Confidence 34455 489999999999999999999999999999999999864 45799999999999999996 699999 9999
Q ss_pred hhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhcc--Ccc
Q 026183 84 LSGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNR--KGL 161 (242)
Q Consensus 84 L~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~--~gl 161 (242)
|+||||||++|| .|+ +|.|. + ..||.+|||+||++|+.+ +|+
T Consensus 159 LsGaHTiG~~hc----~r~-~~~g~-------------------------~------~~tp~~fDn~Yy~~ll~~~~~gl 202 (250)
T PLN02364 159 LSGAHTLGRCHK----DRS-GFEGA-------------------------W------TSNPLIFDNSYFKELLSGEKEGL 202 (250)
T ss_pred eecceeeccccC----CCC-CCCCC-------------------------C------CCCCCccchHHHHHHhcCCcCCC
Confidence 999999999999 344 44321 1 268999999999999998 898
Q ss_pred cc--chhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 026183 162 LQ--SDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGNLKPL 207 (242)
Q Consensus 162 L~--SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgv~ 207 (242)
|. ||++|+.|+ +|+.+|+.||.|+++|+++|++||+||++|++-
T Consensus 203 l~l~sD~~L~~d~--~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 203 LQLVSDKALLDDP--VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred ccccchHHHccCc--hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 65 999999999 999999999999999999999999999999973
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.7e-48 Score=360.74 Aligned_cols=199 Identities=23% Similarity=0.391 Sum_probs=176.9
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccc---------------------------------
Q 026183 4 AVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRT--------------------------------- 50 (242)
Q Consensus 4 ~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------------------------- 50 (242)
.+++++|..||+||+|+||+..|||.+|||.|+|.+||.|...+...
T Consensus 121 pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgli 200 (409)
T cd00649 121 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLI 200 (409)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccc
Confidence 56788987899999999999999999999999999999999754320
Q ss_pred ----cccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhh-hcccccccccccccccccccCCCCCCCCCCCCHHHHHHHH-
Q 026183 51 ----LANQNLPSPFDTLDRLKASFRNVGLNDNFDLVAL-SGAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR- 124 (242)
Q Consensus 51 ----~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL-~GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~- 124 (242)
+...+||+|..++.+|++.|++|||+++ ||||| +||||||++||..|.+|| .+||.+++.|++.|.
T Consensus 201 yv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~-E~VAL~sGAHTiGkaHc~~~~~rl-------g~dP~~~~~~~~gLgw 272 (409)
T cd00649 201 YVNPEGPDGNPDPLAAAKDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASHV-------GPEPEAAPIEQQGLGW 272 (409)
T ss_pred ccCCCCCCCCCCCccCHHHHHHHHHHcCCCHH-HHeeeccCCcceeecCcccccccC-------CCCCCcCHHHHHhhcc
Confidence 1122799999999999999999999999 99999 599999999999999998 269999999999995
Q ss_pred -hcCCCCCC-CCccccCC---CCCCcccCHHHHHHHhc------------------------------------cCcccc
Q 026183 125 -QLCPQGGN-GSVLTNLD---VTTPNVFDNKYFSNLRN------------------------------------RKGLLQ 163 (242)
Q Consensus 125 -~~Cp~~~~-~~~~~~lD---~~tp~~fDN~Yy~~l~~------------------------------------~~glL~ 163 (242)
..||...+ +..++++| +.||.+|||+||++|+. +++||+
T Consensus 273 ~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~ 352 (409)
T cd00649 273 KNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLT 352 (409)
T ss_pred cccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccch
Confidence 89997533 33456777 57999999999999998 558999
Q ss_pred chhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 026183 164 SDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRM--GNLKPLTGNEG 212 (242)
Q Consensus 164 SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM--~~lgv~tG~~G 212 (242)
||++|+.|+ +|+.+|++||+|+++||++|++||+|| +.|||++...|
T Consensus 353 SD~aL~~Dp--~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 353 TDLALRFDP--EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hhHhhhcCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999 999999999999999999999999999 68999887766
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=7.3e-47 Score=369.42 Aligned_cols=198 Identities=25% Similarity=0.345 Sum_probs=174.6
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccc-----------------------------------
Q 026183 4 AVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTAN----------------------------------- 48 (242)
Q Consensus 4 ~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~----------------------------------- 48 (242)
.++++||++|||||||+|||++||+.+|||.|+|.+||+|++.+.
T Consensus 131 pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliy 210 (716)
T TIGR00198 131 PIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIY 210 (716)
T ss_pred HHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccc
Confidence 477899999999999999999999999999999999999995432
Q ss_pred --cccccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhhh-cccccccccccccccccccCCCCCCCCCCCCHHHHHHHHh
Q 026183 49 --RTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALS-GAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQ 125 (242)
Q Consensus 49 --~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL~-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~ 125 (242)
+.. ..++|+|..++.+|++.|++|||+++ |||||+ ||||||++||.+|.+|| .+||++++.|++.|+.
T Consensus 211 vnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~-EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~~gLg~ 281 (716)
T TIGR00198 211 VNPEG-PDGHPDPLCTAQDIRTTFARMGMNDE-ETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEEQGLGW 281 (716)
T ss_pred cCccc-ccCCCCCCCCHHHHHHHHHHcCCChH-HHeeeecCceeccccCCCcccccC-------CCCCCcCHHHHHHhcc
Confidence 011 22699999999999999999999999 999996 99999999999999998 2799999999999999
Q ss_pred cCCCCC---CCCccccCC---CCCCcccCHHHHHHHhcc----------------------------------Cccccch
Q 026183 126 LCPQGG---NGSVLTNLD---VTTPNVFDNKYFSNLRNR----------------------------------KGLLQSD 165 (242)
Q Consensus 126 ~Cp~~~---~~~~~~~lD---~~tp~~fDN~Yy~~l~~~----------------------------------~glL~SD 165 (242)
.||... .+..++++| +.||.+|||+||++|+.+ +++|+||
T Consensus 282 ~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SD 361 (716)
T TIGR00198 282 HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDAD 361 (716)
T ss_pred cCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchh
Confidence 998642 223356676 579999999999999975 6899999
Q ss_pred hhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 026183 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGN--LKPLTGNEG 212 (242)
Q Consensus 166 ~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~--lgv~tG~~G 212 (242)
++|+.|+ +++.+|++||.|++.|+++|++||+||++ ||++...-|
T Consensus 362 laL~~Dp--~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 362 LALRFDP--EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred HHhccCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 9999999 99999999999999999999999999994 777655444
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-43 Score=343.77 Aligned_cols=199 Identities=24% Similarity=0.389 Sum_probs=174.7
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccc---------------------------------
Q 026183 4 AVEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRT--------------------------------- 50 (242)
Q Consensus 4 ~le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~--------------------------------- 50 (242)
.+++++|..||+||+|+||+..|||.+|||.|+|.+||.|...+...
T Consensus 133 pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgl 212 (726)
T PRK15061 133 PIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGL 212 (726)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccc
Confidence 57789998899999999999999999999999999999998654320
Q ss_pred -----cccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhhh-cccccccccccccccccccCCCCCCCCCCCCHHHHHHHH
Q 026183 51 -----LANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALS-GAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLR 124 (242)
Q Consensus 51 -----~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL~-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~ 124 (242)
+-..++|+|..++.+|++.|++||||++ |||||+ ||||||++||..|.+|| .+||.+++.+++.|.
T Consensus 213 iyvnpegp~glPdP~~sa~~lR~tF~RMGmnDe-EtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~~~~qgLg 284 (726)
T PRK15061 213 IYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAPIEEQGLG 284 (726)
T ss_pred eecCCCCCCCCCCcccCHHHHHHHHHHcCCCHH-HheeeccCCceeeeCCCcCccccc-------CCCCCcCHHHHHhcc
Confidence 0123489999999999999999999999 999995 99999999999999998 379999999999984
Q ss_pred --hcCCCCCC-CCccccCC---CCCCcccCHHHHHHHhcc------------------------------------Cccc
Q 026183 125 --QLCPQGGN-GSVLTNLD---VTTPNVFDNKYFSNLRNR------------------------------------KGLL 162 (242)
Q Consensus 125 --~~Cp~~~~-~~~~~~lD---~~tp~~fDN~Yy~~l~~~------------------------------------~glL 162 (242)
+.||.+.+ ++.+.++| ..||.+|||+||++|+.+ .+||
T Consensus 285 w~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~ML 364 (726)
T PRK15061 285 WKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTML 364 (726)
T ss_pred ccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccc
Confidence 89997533 34456677 679999999999999985 5899
Q ss_pred cchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 026183 163 QSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGN--LKPLTGNEG 212 (242)
Q Consensus 163 ~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~--lgv~tG~~G 212 (242)
+||++|+.|+ +++++|++|++|+++|+++|++||.||.+ +|+++..-|
T Consensus 365 tSD~AL~~DP--~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 365 TTDLALRFDP--EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccHHhhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 9999999999 99999999999999999999999999955 888766555
No 12
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.6e-43 Score=313.50 Aligned_cols=164 Identities=34% Similarity=0.538 Sum_probs=147.9
Q ss_pred ChHHHHhhCCCCCCHHHHHHHHHHHHHHHh--CCCceeccCCCCCCcccc--cccccCCCCCCCCCHHHHHHHHHHcCCC
Q 026183 1 MKAAVEKACPRVVSCADILTIAAEQSVALS--GGPSWTNLLGRRDSRTAN--RTLANQNLPSPFDTLDRLKASFRNVGLN 76 (242)
Q Consensus 1 iK~~le~~cp~~VScADiialAa~~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 76 (242)
||+++|+ |++|||||||+||+++||+.+ |||.|+|++||+|+..+. ...+...+|.|+.++.++++.|+++||+
T Consensus 70 ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~ 147 (255)
T cd00314 70 IKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLS 147 (255)
T ss_pred HHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCC
Confidence 5777777 899999999999999999999 999999999999999663 2233556888888999999999999999
Q ss_pred CcchhHhhh-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHH
Q 026183 77 DNFDLVALS-GAHTF-GRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSN 154 (242)
Q Consensus 77 ~~~e~VaL~-GaHTi-G~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~ 154 (242)
++ |||||+ ||||| |++||..|..|+ | .+|+.||.+|||+||++
T Consensus 148 ~~-e~VAL~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~ 192 (255)
T cd00314 148 PS-ELVALSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKN 192 (255)
T ss_pred HH-HHHhhccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHH
Confidence 99 999999 99999 999998777664 1 23558999999999999
Q ss_pred HhccC----------------ccccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 026183 155 LRNRK----------------GLLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGN 203 (242)
Q Consensus 155 l~~~~----------------glL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~ 203 (242)
|+.++ ++|+||+.|+.|+ +|+.+|++||.|+++|+++|++||+||++
T Consensus 193 l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~--~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 193 LLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDS--ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HhcCCcccccCCccCCCcccCCCchhhHHHhcCH--hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 99988 8999999999999 99999999999999999999999999985
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.2e-36 Score=267.02 Aligned_cols=158 Identities=27% Similarity=0.361 Sum_probs=132.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccccccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhhhc-ccc
Q 026183 11 RVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALSG-AHT 89 (242)
Q Consensus 11 ~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL~G-aHT 89 (242)
.+|||||||||||++||+.||||.|+|++||+|++++.+. +||.|+.++++|++.|++|||+++ |||+|+| |||
T Consensus 96 ~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~-DmVaLsggaHT 170 (264)
T cd08201 96 PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTS-EMIALVACGHT 170 (264)
T ss_pred CccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChH-HHheeecCCee
Confidence 3699999999999999999999999999999999988753 499999999999999999999999 9999995 999
Q ss_pred cccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHHHHHHhccCc---------
Q 026183 90 FGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKYFSNLRNRKG--------- 160 (242)
Q Consensus 90 iG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Yy~~l~~~~g--------- 160 (242)
||++||..|.+++-. +. ..+...++| .||.+|||+||.+++.+..
T Consensus 171 iG~ahc~~f~~~~~~--------g~-----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~ 224 (264)
T cd08201 171 LGGVHSEDFPEIVPP--------GS-----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPN 224 (264)
T ss_pred eeecccccchhhcCC--------cc-----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCC
Confidence 999999988876521 00 001234566 7999999999999997642
Q ss_pred -cccchhhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 026183 161 -LLQSDQELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGN 203 (242)
Q Consensus 161 -lL~SD~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~ 203 (242)
-+.||..++...++.| ++.+| +++.|.+.++..++||++
T Consensus 225 ~~~~sd~r~f~~d~n~t---~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 225 NTTNSDLRIFSSDGNVT---MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCccchhhheecCccHH---HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 4689999997552233 46666 899999999999999975
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.97 E-value=1.6e-30 Score=232.57 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=129.3
Q ss_pred HHHhhCC------CCCCHHHHHHHHHHHHHHHhCC-----CceeccCCCCCCcccccccc--cCCCCCCC----------
Q 026183 4 AVEKACP------RVVSCADILTIAAEQSVALSGG-----PSWTNLLGRRDSRTANRTLA--NQNLPSPF---------- 60 (242)
Q Consensus 4 ~le~~cp------~~VScADiialAa~~Av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~---------- 60 (242)
.+++++| ..||+||+|+||+..|||.+|| |.++|.+||.|.+....... ...+|.+.
T Consensus 83 ~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~ 162 (297)
T cd08200 83 GIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGY 162 (297)
T ss_pred HHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCC
Confidence 4556777 2699999999999999999999 99999999999987632211 11334332
Q ss_pred --CCHHHHHHHHHHcCCCCcchhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccc
Q 026183 61 --DTLDRLKASFRNVGLNDNFDLVALSGAH-TFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLT 137 (242)
Q Consensus 61 --~~~~~l~~~F~~~Gl~~~~e~VaL~GaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~ 137 (242)
.....|++.|.+|||+++ |||||+||| ++|+.|..+ +.|
T Consensus 163 ~~~~~~~Lrd~f~rlglsd~-EmvaL~Gg~r~lG~~~~~s-------~~G------------------------------ 204 (297)
T cd08200 163 RVPPEEMLVDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-------KHG------------------------------ 204 (297)
T ss_pred CCCHHHHHHHHHHhCCCChH-HHhheecchhhcccCCCCC-------CCC------------------------------
Confidence 234789999999999999 999999997 799887532 111
Q ss_pred cCCCCCCcccCHHHHHHHhcc--------------------Cc-----cccchhhhhcCCchhHHHHHHHHhhC--HHHH
Q 026183 138 NLDVTTPNVFDNKYFSNLRNR--------------------KG-----LLQSDQELFSTPGADTIDIVNVFRKN--QAAF 190 (242)
Q Consensus 138 ~lD~~tp~~fDN~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~~~t~~~V~~yA~d--~~~F 190 (242)
.+..+|.+|||.||++|+.. .| .+.+|..|..|+ +.+++|+.||.| +++|
T Consensus 205 -~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~--~~R~~ve~YA~dd~~~~F 281 (297)
T cd08200 205 -VFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRAVAEVYASDDAQEKF 281 (297)
T ss_pred -CCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCH--HHHHHHHHHhcccchhHH
Confidence 12368999999999999951 01 267899999999 999999999998 9999
Q ss_pred HHHHHHHHHHhhcCC
Q 026183 191 FKSFVTSMIRMGNLK 205 (242)
Q Consensus 191 ~~~Fa~Am~KM~~lg 205 (242)
|++|++||.||.++.
T Consensus 282 ~~DF~~A~~Klmeld 296 (297)
T cd08200 282 VKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999874
No 15
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.1e-28 Score=228.97 Aligned_cols=194 Identities=23% Similarity=0.374 Sum_probs=162.0
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHHHhCCCceeccCCCCCCcccccc----------------------------------
Q 026183 5 VEKACPRVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRT---------------------------------- 50 (242)
Q Consensus 5 le~~cp~~VScADiialAa~~Av~~~GGP~~~v~~GR~D~~~s~~~---------------------------------- 50 (242)
++++++..+|+||+|+||+..|++.+|++.+.|..||.|-..+...
T Consensus 147 IKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIY 226 (730)
T COG0376 147 IKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIY 226 (730)
T ss_pred HhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEE
Confidence 5789999999999999999999999999999999999998877640
Q ss_pred ---cccCCCCCCCCCHHHHHHHHHHcCCCCcchhHhhh-cccccccccccccccccccCCCCCCCCCCCCHHHHHHH--H
Q 026183 51 ---LANQNLPSPFDTLDRLKASFRNVGLNDNFDLVALS-GAHTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQL--R 124 (242)
Q Consensus 51 ---~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaL~-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L--~ 124 (242)
+-..+.|+|..+..++++.|++|++|++ |+|||+ ||||+|++|...-.+.+ +++|.-.+--.+.| .
T Consensus 227 VNPEGpng~PDpl~aA~dIRetFaRMaMNDe-ETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~ 298 (730)
T COG0376 227 VNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWA 298 (730)
T ss_pred eCCCCCCCCCChhhhHHHHHHHHHHhcCCcH-hhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccc
Confidence 1235689999999999999999999999 999998 69999999987644443 46787777777766 4
Q ss_pred hcCCCCCCC-Ccc---ccCCCCCCcccCHHHHHHHhcc-----------------------------------Cccccch
Q 026183 125 QLCPQGGNG-SVL---TNLDVTTPNVFDNKYFSNLRNR-----------------------------------KGLLQSD 165 (242)
Q Consensus 125 ~~Cp~~~~~-~~~---~~lD~~tp~~fDN~Yy~~l~~~-----------------------------------~glL~SD 165 (242)
+.|..+.+. ..+ ...+..||++|||+||.+|+.. ..||.+|
T Consensus 299 ~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttD 378 (730)
T COG0376 299 NTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTD 378 (730)
T ss_pred cccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccc
Confidence 556654332 222 3346679999999999999963 1489999
Q ss_pred hhhhcCCchhHHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCC
Q 026183 166 QELFSTPGADTIDIVNVFRKNQAAFFKSFVTSMIRMGN--LKPLT 208 (242)
Q Consensus 166 ~~L~~d~~~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~--lgv~t 208 (242)
.+|..|| ..++|.++|.+||+.|.+.|++||.||.+ +|++.
T Consensus 379 laLr~DP--~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP~~ 421 (730)
T COG0376 379 LALRFDP--EYEKISRRFLEDPDEFADAFARAWFKLTHRDMGPKA 421 (730)
T ss_pred hhhhcCh--HHHHHHHHHHhCHHHHHHHHHHHHHHHhhccCCchh
Confidence 9999999 99999999999999999999999999987 55543
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.93 E-value=4.1e-26 Score=223.92 Aligned_cols=161 Identities=21% Similarity=0.279 Sum_probs=127.7
Q ss_pred HHHhhCC-CCCCHHHHHHHHHHHHHHHh---CCC--ceeccCCCCCCcccccccccCCCC-CC--------------CCC
Q 026183 4 AVEKACP-RVVSCADILTIAAEQSVALS---GGP--SWTNLLGRRDSRTANRTLANQNLP-SP--------------FDT 62 (242)
Q Consensus 4 ~le~~cp-~~VScADiialAa~~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP-~p--------------~~~ 62 (242)
.++++.| ..||.||+|+||+..|||.+ ||| .++|.+||.|++.... +++...| .| ...
T Consensus 501 ~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~ 579 (716)
T TIGR00198 501 KIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTP 579 (716)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCH
Confidence 4556787 36999999999999999999 897 5899999999987642 1111111 11 123
Q ss_pred HHHHHHHHHHcCCCCcchhHhhhcc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCC
Q 026183 63 LDRLKASFRNVGLNDNFDLVALSGA-HTFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDV 141 (242)
Q Consensus 63 ~~~l~~~F~~~Gl~~~~e~VaL~Ga-HTiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~ 141 (242)
...|++.|.++||+++ |||||+|| |++|+.|..+ +.| .+.
T Consensus 580 ~~~l~d~a~~lglt~~-EmvaL~Gg~r~lG~~~~~s-------~~G-------------------------------~~T 620 (716)
T TIGR00198 580 EELLLDKAQLLTLTAP-EMTVLIGGMRVLGANHGGS-------KHG-------------------------------VFT 620 (716)
T ss_pred HHHHHHHHHhCCCChH-HHHheecchhhccccCCCC-------CCC-------------------------------CCc
Confidence 4668899999999999 99999999 5999998632 111 123
Q ss_pred CCCcccCHHHHHHHhccC--------------------c---cc--cchhhhhcCCchhHHHHHHHHhhCH--HHHHHHH
Q 026183 142 TTPNVFDNKYFSNLRNRK--------------------G---LL--QSDQELFSTPGADTIDIVNVFRKNQ--AAFFKSF 194 (242)
Q Consensus 142 ~tp~~fDN~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~~~t~~~V~~yA~d~--~~F~~~F 194 (242)
.+|.+|||.||++|+... | ++ .+|..|..|+ +.+++|+.||.|+ ++|+++|
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~--~lra~aE~YA~dd~~~~F~~DF 698 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS--ILRAVAEVYAQDDAREKFVKDF 698 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH--HHHHHHHHHhcccccchHHHHH
Confidence 689999999999999621 2 22 6799999999 9999999999997 8999999
Q ss_pred HHHHHHhhcCCC
Q 026183 195 VTSMIRMGNLKP 206 (242)
Q Consensus 195 a~Am~KM~~lgv 206 (242)
++||.|+.+++-
T Consensus 699 ~~Aw~Klm~ldr 710 (716)
T TIGR00198 699 VAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHhCCC
Confidence 999999999974
No 17
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.93 E-value=1.4e-25 Score=219.20 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHHHHh---CC--CceeccCCCCCCcccccccc--cCCCCCCC------------CCHHHHHHHHHH
Q 026183 12 VVSCADILTIAAEQSVALS---GG--PSWTNLLGRRDSRTANRTLA--NQNLPSPF------------DTLDRLKASFRN 72 (242)
Q Consensus 12 ~VScADiialAa~~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~l~~~F~~ 72 (242)
.||.||+|+||+..|||.+ || |.++|.+||.|++....... ...+|... .....|++.|.+
T Consensus 522 ~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~ 601 (726)
T PRK15061 522 KVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQL 601 (726)
T ss_pred ceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHHHHh
Confidence 5999999999999999998 68 99999999999987532211 12345432 124789999999
Q ss_pred cCCCCcchhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcccCHHH
Q 026183 73 VGLNDNFDLVALSGAH-TFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNVFDNKY 151 (242)
Q Consensus 73 ~Gl~~~~e~VaL~GaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~fDN~Y 151 (242)
+||+++ |||||+||| ++|+.|..++ .| .+..+|.+|||.|
T Consensus 602 lglt~~-EmvaL~Gg~r~Lg~~~~~S~-------~G-------------------------------~~T~~p~~fsNdf 642 (726)
T PRK15061 602 LTLTAP-EMTVLVGGLRVLGANYGGSK-------HG-------------------------------VFTDRPGVLTNDF 642 (726)
T ss_pred CCCChH-HHhheecchhhcccCCCCCC-------CC-------------------------------CCcCCCCccccHH
Confidence 999999 999999997 7898874321 11 1236899999999
Q ss_pred HHHHhcc----------C----------c---c--ccchhhhhcCCchhHHHHHHHHhhC--HHHHHHHHHHHHHHhhcC
Q 026183 152 FSNLRNR----------K----------G---L--LQSDQELFSTPGADTIDIVNVFRKN--QAAFFKSFVTSMIRMGNL 204 (242)
Q Consensus 152 y~~l~~~----------~----------g---l--L~SD~~L~~d~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~KM~~l 204 (242)
|++|+.. . | + +.+|..|..|+ +.+++|+.||.| +++|+++|++||.|+.++
T Consensus 643 FvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds--~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmel 720 (726)
T PRK15061 643 FVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNS--QLRALAEVYASDDAKEKFVRDFVAAWTKVMNL 720 (726)
T ss_pred HHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCH--HHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 9999951 0 1 1 47899999999 999999999999 999999999999999998
Q ss_pred CC
Q 026183 205 KP 206 (242)
Q Consensus 205 gv 206 (242)
+-
T Consensus 721 dr 722 (726)
T PRK15061 721 DR 722 (726)
T ss_pred CC
Confidence 73
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.3e-10 Score=108.01 Aligned_cols=158 Identities=20% Similarity=0.310 Sum_probs=108.2
Q ss_pred hhCCCCCCHHHHHHHHHHHHHHHh---CC--CceeccCCCCCCcccccccccCCCCCCCC--------------CHHHHH
Q 026183 7 KACPRVVSCADILTIAAEQSVALS---GG--PSWTNLLGRRDSRTANRTLANQNLPSPFD--------------TLDRLK 67 (242)
Q Consensus 7 ~~cp~~VScADiialAa~~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~~~~lP~p~~--------------~~~~l~ 67 (242)
+.....||.||+|.|++..|||.+ +| ..+||.+||.|++..-.......+-.|.. .-.-|+
T Consensus 521 ~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 521 KEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred HHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 455577999999999999999986 55 35788999999976643211111222221 234466
Q ss_pred HHHHHcCCCCcchhHhhhccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCccccCCCCCCcc
Q 026183 68 ASFRNVGLNDNFDLVALSGAH-TFGRAQCRFFSVRLFNFNNTGNPDPTLDATFLQQLRQLCPQGGNGSVLTNLDVTTPNV 146 (242)
Q Consensus 68 ~~F~~~Gl~~~~e~VaL~GaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~tp~~ 146 (242)
+.-.-.+|+.. ||++|.||- -+|.-+ .|+ ...+.. ..|..
T Consensus 601 DkAqlL~Ltap-emtVLiGGlRvLg~n~-----------g~s-------------------------~~GVfT--~~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAP-EMTVLIGGLRVLGANY-----------GGS-------------------------KHGVFT--DRPGV 641 (730)
T ss_pred HHHHHhccCCc-cceEEEcceEeeccCC-----------CCC-------------------------ccceec--cCccc
Confidence 78788999999 999999864 344322 221 112222 36888
Q ss_pred cCHHHHHHHhcc----------C----------cc-----ccchhhhhcCCchhHHHHHHHHhhC--HHHHHHHHHHHHH
Q 026183 147 FDNKYFSNLRNR----------K----------GL-----LQSDQELFSTPGADTIDIVNVFRKN--QAAFFKSFVTSMI 199 (242)
Q Consensus 147 fDN~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~ 199 (242)
+.|.||.||+.- + |- -..|..+-.++ ..+.+.+.||.+ ++.|.++|.+||.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns--~LRA~aEVYa~dda~ekFv~DFvaaw~ 719 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRALAEVYASDDAKEKFVKDFVAAWT 719 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH--HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 889999998852 1 21 13444444555 899999999875 7899999999999
Q ss_pred HhhcCC
Q 026183 200 RMGNLK 205 (242)
Q Consensus 200 KM~~lg 205 (242)
|..++.
T Consensus 720 kVMn~D 725 (730)
T COG0376 720 KVMNLD 725 (730)
T ss_pred HHhccc
Confidence 998875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=76.03 E-value=43 Score=31.25 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=30.2
Q ss_pred hCCCceeccCCCCCCcccccccccCCCCC----CCCCHHHHHHHHHHcCCCCc
Q 026183 30 SGGPSWTNLLGRRDSRTANRTLANQNLPS----PFDTLDRLKASFRNVGLNDN 78 (242)
Q Consensus 30 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 78 (242)
+|..++..++||.+-+.-.+... ...+. +-..+.++.+.|++.|+..+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKA-ESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred cCCCEEEeecchHHHhccccccc-ccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 48888999999996654322111 11221 12357788889999888653
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=68.71 E-value=6 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccccccccccCC
Q 026183 189 AFFKSFVTSMIRMGNLKPLTGNEGEIRLNCRRVNGN 224 (242)
Q Consensus 189 ~F~~~Fa~Am~KM~~lgv~tG~~GeiR~~C~~~N~~ 224 (242)
....+|..||.||+.||- +-.---+||.|-+.
T Consensus 2 ~m~~~F~~am~KlavLG~----d~~~LiDCSdVIP~ 33 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH----DRSDLIDCSDVIPV 33 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-----GGGSEE-GGGS--
T ss_pred hHHHHHHHHHHHHHHhcC----ChhhcccchhhccC
Confidence 357899999999999964 33335599998744
No 21
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=65.42 E-value=94 Score=29.62 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=32.0
Q ss_pred hCCCceeccCCCCCCcccccccccCCCCCCCC----CHHHHHHHHHHcCCCCc
Q 026183 30 SGGPSWTNLLGRRDSRTANRTLANQNLPSPFD----TLDRLKASFRNVGLNDN 78 (242)
Q Consensus 30 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~----~~~~l~~~F~~~Gl~~~ 78 (242)
+|-.++..++||.|-+.-...+. ..+|...+ .+.++.+.|++.|+..+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 58889999999988754432211 12443332 47888889999888655
No 22
>PRK05269 transaldolase B; Provisional
Probab=63.77 E-value=78 Score=29.27 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=31.5
Q ss_pred HhCCCceeccCCCCCCcccccccccC---CCCCCCCCHHHHHHHHHHcCCCCc
Q 026183 29 LSGGPSWTNLLGRRDSRTANRTLANQ---NLPSPFDTLDRLKASFRNVGLNDN 78 (242)
Q Consensus 29 ~~GGP~~~v~~GR~D~~~s~~~~~~~---~lP~p~~~~~~l~~~F~~~Gl~~~ 78 (242)
.+|..++..++||.|-+.-...+... ..-++...+.++.+.|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 34888999999999865332111000 011123457888899999999766
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=40.70 E-value=1.1e+02 Score=28.30 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=31.4
Q ss_pred HhCCCceeccCCCCCCcccccccccCCCC----CCCCCHHHHHHHHHHcCCCCc
Q 026183 29 LSGGPSWTNLLGRRDSRTANRTLANQNLP----SPFDTLDRLKASFRNVGLNDN 78 (242)
Q Consensus 29 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~ 78 (242)
.+|..++..++||.+-+.-...+. ...+ ++...+.++.+.|++.|+..+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 458889999999997753322110 0111 123457888889999998765
No 24
>PRK12346 transaldolase A; Provisional
Probab=32.28 E-value=56 Score=30.27 Aligned_cols=49 Identities=8% Similarity=0.029 Sum_probs=31.4
Q ss_pred HhCCCceeccCCCCCCcccccccccCCCCCC----CCCHHHHHHHHHHcCCCCc
Q 026183 29 LSGGPSWTNLLGRRDSRTANRTLANQNLPSP----FDTLDRLKASFRNVGLNDN 78 (242)
Q Consensus 29 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~~~ 78 (242)
.+|..++..++||.|-+...... ...++.. -..+.++.+.|++.|+..+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~-~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKP-MDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccc-cccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 45888999999999875433211 1112111 2347888889999898654
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=29.06 E-value=39 Score=31.18 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=30.7
Q ss_pred hCCCceeccCCCCCCcccccccccCCCCC----CCCCHHHHHHHHHHcCCCCc
Q 026183 30 SGGPSWTNLLGRRDSRTANRTLANQNLPS----PFDTLDRLKASFRNVGLNDN 78 (242)
Q Consensus 30 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 78 (242)
+|-.++..++||.|-+.-..... ...+. +...+.++.+.|++.|+..+
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred cCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 47788999999998653321110 01111 12347888889999999766
No 26
>PLN02161 beta-amylase
Probab=28.01 E-value=77 Score=31.37 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=22.7
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 026183 179 IVNVFRKNQAAFFKSFVTSMIRMG-----NLKPLTGNEGEIRL 216 (242)
Q Consensus 179 ~V~~yA~d~~~F~~~Fa~Am~KM~-----~lgv~tG~~GeiR~ 216 (242)
-++.|.. |...|...|.-+. +|.|=-|+.||.|=
T Consensus 234 plq~Y~D----fm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYED----FMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 4566753 6666666666543 45566789999997
No 27
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=24.40 E-value=1e+02 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC
Q 026183 9 CPRVVSCADILTIAAEQSVALSGG 32 (242)
Q Consensus 9 cp~~VScADiialAa~~Av~~~GG 32 (242)
+...+|.|||..+....-+...+.
T Consensus 51 ~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 51 VGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp SBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred eccCCchhHHHHHHHHHHHHHhCC
Confidence 457799999999988777766544
No 28
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=23.13 E-value=41 Score=22.86 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.0
Q ss_pred HHHHHHH---HHHHHhCCCceeccCCCCCCcccc
Q 026183 18 ILTIAAE---QSVALSGGPSWTNLLGRRDSRTAN 48 (242)
Q Consensus 18 iialAa~---~Av~~~GGP~~~v~~GR~D~~~s~ 48 (242)
+|+||+- |-+..|-||.+++-+||.--.-|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 5666663 556678999999999997665554
No 29
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=21.96 E-value=40 Score=24.04 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHhhCHHHHHHHHHHHHHHhhcCC
Q 026183 182 VFRKNQAAFFKSFVTSMIRMGNLK 205 (242)
Q Consensus 182 ~yA~d~~~F~~~Fa~Am~KM~~lg 205 (242)
+...|| +.||.++|+.|..-.
T Consensus 5 k~S~DP---y~DFr~SM~EMI~~~ 25 (66)
T TIGR01568 5 KESDDP---YEDFRRSMEEMIEER 25 (66)
T ss_pred eCCCCh---HHHHHHHHHHHHHHc
Confidence 345566 789999999998765
Done!