BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026186
         (242 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HTY|A Chain A, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|B Chain B, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|C Chain C, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|D Chain D, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|E Chain E, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|F Chain F, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|G Chain G, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|H Chain H, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|I Chain I, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|J Chain J, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|K Chain K, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|L Chain L, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|M Chain M, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|N Chain N, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|O Chain O, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
 pdb|3HTY|P Chain P, Crystal Structure Of Hypothetical Protein Bt_0869 From
          Bacteroides Thetaiotaomicron Vpi-5482 (Np_809782.1) At
          1.95 A Resolution
          Length = 94

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 73 EHGIVASSSNVATPIWESWKPQ 94
          E G VASS N AT ++ESWK +
Sbjct: 25 EEGGVASSVNXATLVYESWKQE 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,940,560
Number of Sequences: 62578
Number of extensions: 259941
Number of successful extensions: 542
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 2
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)