BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026186
         (242 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum
           GN=DDB_G0269096 PE=4 SV=1
          Length = 285

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 5/145 (3%)

Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKG-FSITIAPLGAVCAVLFATPSTPAARKYN 158
           P L +I W    +F  + +L  +    A      + I    A   ++F  P +P A+  N
Sbjct: 122 PDLEEIGWTWLASFTGILVLALIHYREALDAQMQVLIGSFAASAVIIFGVPKSPLAQPRN 181

Query: 159 VFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAFMI--YARAPHPPAASLPILFID 214
           + M     A +G  +    ++       +  LA S++ M+  +  + HPP  +  ++ + 
Sbjct: 182 LIMGHFLSAVVGSVIRVALVYTNANFEVACALAVSLSIMLMQFTNSLHPPGGATALICVM 241

Query: 215 GVKLHSLNFWYALFPGAAGCIILCL 239
           GV+     F++   P  +G +I+ L
Sbjct: 242 GVEQRWRGFYFIFVPILSGALIMLL 266


>sp|Q556Z9|Y3361_DICDI Transmembrane protein DDB_G0273707/DDB_G0273361 OS=Dictyostelium
           discoideum GN=DDB_G0273707 PE=4 SV=2
          Length = 311

 Score = 40.4 bits (93), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 89  ESWKP-QKGSSNPSLSDILWPSAGAFAAMAILGKMD-QILAPKGFSITIAPLGAVCAVLF 146
           + WK  +K      L +I W    +F  + +L  +  ++   K     +    A   ++F
Sbjct: 136 KKWKGGEKSPVRADLEEIGWSWLSSFIGILVLALLHYRVTVEKETIFLLGSFAASAVLIF 195

Query: 147 ATPSTPAARKYNVFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAF--MIYARAPH 202
             P +P A+  N+ +  I  A +G  +    ++       +  LA S+A   M + ++ H
Sbjct: 196 GAPKSPLAQPRNLVLGHIVSATVGSIIRVALVYTNAQTEVACALAVSLAIVGMHFTKSIH 255

Query: 203 PPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCL 239
           PP  +  ++ +   +     F+Y   P A+G + + L
Sbjct: 256 PPGGATALICVMSAEQRWRGFYYIFVPVASGSLTMLL 292


>sp|Q28Q60|ISPDF_JANSC Bifunctional enzyme IspD/IspF OS=Jannaschia sp. (strain CCS1)
           GN=ispDF PE=3 SV=1
          Length = 382

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 34/76 (44%)

Query: 124 QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLA 183
           ++ A +GFSIT A L  +C      P   A R     + +I  A + V A +    G+  
Sbjct: 307 ELAANRGFSITNADLTLICEQPKIGPVASAMRARVADLLRIDVARVSVKATTSERLGFTG 366

Query: 184 RSAGLAASIAFMIYAR 199
           R  G+AA     + AR
Sbjct: 367 REEGIAALATITLVAR 382


>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana
           GN=ABCG42 PE=2 SV=1
          Length = 1392

 Score = 32.0 bits (71), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 113 FAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVL 172
           F A+A + + D ++A    SI+I  L      +   PS P+  ++  ++S +  A IG+ 
Sbjct: 641 FRAIAAVFR-DFVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLT 699

Query: 173 AFSIFGPGW 181
           A   F P W
Sbjct: 700 ANEFFAPRW 708


>sp|Q96SN8|CK5P2_HUMAN CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens
          GN=CDK5RAP2 PE=1 SV=5
          Length = 1893

 Score = 31.6 bits (70), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 17 ITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGI 76
          +T   +L  CS  + S +PD  L G   +  LG  L  N ++ET S  R R  K+FE+ I
Sbjct: 10 VTVPGTLSGCSGLVPS-VPDD-LDGINPNAGLGNGLLPNVSEETVSPTRARNMKDFENQI 67


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.133    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,522,311
Number of Sequences: 539616
Number of extensions: 3446462
Number of successful extensions: 8754
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8750
Number of HSP's gapped (non-prelim): 17
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)