Query 026186
Match_columns 242
No_of_seqs 131 out of 591
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3448 CBS-domain-containing 100.0 1.9E-39 4.2E-44 299.1 9.8 153 87-241 12-167 (382)
2 PF04982 HPP: HPP family; Int 100.0 2.8E-33 6.1E-38 226.5 8.7 107 133-241 1-107 (120)
3 PF06081 DUF939: Bacterial pro 93.4 0.18 3.9E-06 41.8 5.4 93 103-202 5-97 (141)
4 COG4129 Predicted membrane pro 92.8 0.58 1.3E-05 44.5 8.5 100 103-211 11-112 (332)
5 PF04632 FUSC: Fusaric acid re 81.6 9.6 0.00021 37.7 9.2 110 97-210 331-445 (650)
6 PF04632 FUSC: Fusaric acid re 65.2 30 0.00066 34.2 8.1 83 102-193 2-86 (650)
7 PRK10631 p-hydroxybenzoic acid 61.3 26 0.00057 36.4 7.0 77 100-177 347-423 (652)
8 TIGR01667 YCCS_YHJK integral m 53.1 52 0.0011 34.3 7.7 93 87-188 368-462 (701)
9 PRK10631 p-hydroxybenzoic acid 42.3 1E+02 0.0022 32.2 7.8 102 99-211 6-128 (652)
10 PF13515 FUSC_2: Fusaric acid 39.0 77 0.0017 24.3 5.0 49 154-203 34-82 (128)
11 COG1289 Predicted membrane pro 34.1 1.2E+02 0.0027 30.9 6.8 99 102-209 355-457 (674)
12 PF13829 DUF4191: Domain of un 28.4 1.4E+02 0.003 27.4 5.4 56 156-211 28-94 (224)
13 COG3238 Uncharacterized protei 27.2 69 0.0015 27.6 3.2 44 105-169 69-112 (150)
14 TIGR01666 YCCS hypothetical me 27.1 2.6E+02 0.0056 29.5 7.9 88 87-183 366-455 (704)
No 1
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-39 Score=299.11 Aligned_cols=153 Identities=24% Similarity=0.447 Sum_probs=140.7
Q ss_pred hhhhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhH
Q 026186 87 IWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA--PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQI 164 (242)
Q Consensus 87 ~l~~~~p~~~~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~--~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHl 164 (242)
|++.+.|...+.+ ++|.+++.+|+++||++.++++.+.. +...|++++||||||||+|++|+||+|||||+||||+
T Consensus 12 wfk~f~P~~~~v~--~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaSPLAQPwsiiGGNl 89 (382)
T COG3448 12 WFKLFHPLTAPVR--LRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSIIGGNL 89 (382)
T ss_pred HHHhcCcccCCCC--cHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCCccccchhhhcchH
Confidence 4455577665544 59999999999999999999998854 3467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhCCCCCCCCcceee-eeccccccccCchhhhHHHHHHHHHhhhhc
Q 026186 165 GCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLIV 241 (242)
Q Consensus 165 iSAlIGv~~~~l~g~~wlAaaLAValAI~~M~ltrtvHPPAGAtALi-vl~~~~~~~lg~~fvl~PVllgsliLlli~ 241 (242)
++|++|+.+.+++|++.+++++||+++|..|+.|||+|||+||.||. +++|+.++++||+|+++||++++++|+.++
T Consensus 90 vaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a 167 (382)
T COG3448 90 VAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLA 167 (382)
T ss_pred HHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 788899999999999999999999998764
No 2
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=100.00 E-value=2.8e-33 Score=226.47 Aligned_cols=107 Identities=32% Similarity=0.586 Sum_probs=99.4
Q ss_pred EEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeee
Q 026186 133 ITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILF 212 (242)
Q Consensus 133 lLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l~g~~wlAaaLAValAI~~M~ltrtvHPPAGAtALiv 212 (242)
++++||||||+|+|+.|++|+|||||+++||++++++|+++.+++|+.||++++|+++++++|.++||+||||||||+++
T Consensus 1 ll~~s~gAsa~llf~~p~sp~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~ 80 (120)
T PF04982_consen 1 LLLPSFGASAVLLFGAPSSPLAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLA 80 (120)
T ss_pred CccccHHHHHHHhhcCCCCchhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred eccccccccCchhhhHHHHHHHHHhhhhc
Q 026186 213 IDGVKLHSLNFWYALFPGAAGCIILCLIV 241 (242)
Q Consensus 213 l~~~~~~~lg~~fvl~PVllgsliLlli~ 241 (242)
+.++.. ++|+|++.||++|+++|+.++
T Consensus 81 ~l~~~~--~~~~~~~~pVl~g~~il~~~a 107 (120)
T PF04982_consen 81 VLGGAS--LGWGFVLIPVLLGSLILVVVA 107 (120)
T ss_pred hhcccc--cCchHHHHHHHHHHHHHHHHH
Confidence 444432 689999999999999988764
No 3
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=93.44 E-value=0.18 Score=41.78 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHhhChhHH
Q 026186 103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWL 182 (242)
Q Consensus 103 ~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l~g~~wl 182 (242)
.+.+.+.+++++++.+..++.. +. -..++++|--.+-= +-+.-+-+=++-+.|+++++++|+.+..++|++||
T Consensus 5 ~r~iKtaiA~~la~~ia~~l~~-----~~-~~~A~i~Ail~~q~-T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~ 77 (141)
T PF06081_consen 5 MRTIKTAIAAFLAILIAQLLGL-----QY-PFFAPIAAILSMQP-TVYRSLKQGLNRILGTLIGALLALLFFLILGYNPL 77 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-----Cc-hHHHHHHHhheeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 3567788998888888766531 21 23444443322221 12233566788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 026186 183 ARSAGLAASIAFMIYARAPH 202 (242)
Q Consensus 183 AaaLAValAI~~M~ltrtvH 202 (242)
+.++.+.+.+.....+|.-+
T Consensus 78 ~~~l~v~i~i~~~~~l~~~~ 97 (141)
T PF06081_consen 78 SIGLAVIITIPICNWLKLGE 97 (141)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999864
No 4
>COG4129 Predicted membrane protein [Function unknown]
Probab=92.79 E-value=0.58 Score=44.53 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCC--CccchhhhhhhHHHHHHHHHHHHhhChh
Q 026186 103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTP--AARKYNVFMSQIGCAAIGVLAFSIFGPG 180 (242)
Q Consensus 103 ~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SP--lAQPrnVIgGHliSAlIGv~~~~l~g~~ 180 (242)
.+.+.+.+|+++++.+..++.. +. +.|++-..++-.-|+-+ +=+=++.+.|+.+++++|+++..++|..
T Consensus 11 ~RtlKt~ia~~La~~ia~~l~~-----~~----~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~ 81 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHLLGL-----PQ----PAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN 81 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----Cc----hHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5667788888888887764432 22 23333333333333322 3356788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceee
Q 026186 181 WLARSAGLAASIAFMIYARAPHPPAASLPIL 211 (242)
Q Consensus 181 wlAaaLAValAI~~M~ltrtvHPPAGAtALi 211 (242)
.++.++.+.+.+.++..++-.++=..++.++
T Consensus 82 ~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~ 112 (332)
T COG4129 82 PIAFGVVLLIIIPLLVLLKLENGVVPITVGV 112 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 9999999999999999999888654444443
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=81.61 E-value=9.6 Score=37.71 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=70.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHh
Q 026186 97 SSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI 176 (242)
Q Consensus 97 ~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l 176 (242)
+...++.+.++..+-+++++.+.+++=.+. +........-+.+-...+|..-+.|.-..+.++.|-++++++|..+..+
T Consensus 331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t-~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 331 PLHRDWPLALRNALRAFLAILIAGLFWIAT-GWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999999998877654322 2222233333445555569999999999999999999999999887654
Q ss_pred h-C--hhH--HHHHHHHHHHHHHHHHhCCCCCCCCccee
Q 026186 177 F-G--PGW--LARSAGLAASIAFMIYARAPHPPAASLPI 210 (242)
Q Consensus 177 ~-g--~~w--lAaaLAValAI~~M~ltrtvHPPAGAtAL 210 (242)
+ + ++. +...+++.+.+..+. ..||.-...++
T Consensus 410 vlP~~~~f~~L~l~l~~~l~~~~~~---~~~p~~~~~g~ 445 (650)
T PF04632_consen 410 VLPHLDGFPLLALVLAPFLFLGGLL---MARPRTAYIGL 445 (650)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHH---HcCchHHHHHH
Confidence 4 3 223 333443333333222 34677665444
No 6
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=65.16 E-value=30 Score=34.25 Aligned_cols=83 Identities=22% Similarity=0.147 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccc--hhhhhhhHHHHHHHHHHHHhhCh
Q 026186 102 LSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARK--YNVFMSQIGCAAIGVLAFSIFGP 179 (242)
Q Consensus 102 l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQP--rnVIgGHliSAlIGv~~~~l~g~ 179 (242)
|...++.++++.+++.+..+++. + -+.+++-+|.+-.-|++=...- +.-+.|-++++++|+++..++++
T Consensus 2 ~~~alr~~lA~~lAl~ia~~l~l-----~----~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~ 72 (650)
T PF04632_consen 2 LRFALRTALAAMLALYIAFWLQL-----P----HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQ 72 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-----C----CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778889988888888766542 1 1334555555555555433333 44578999999999999988886
Q ss_pred hHHHHHHHHHHHHH
Q 026186 180 GWLARSAGLAASIA 193 (242)
Q Consensus 180 ~wlAaaLAValAI~ 193 (242)
..+...+++++-+.
T Consensus 73 ~p~l~~~~lal~i~ 86 (650)
T PF04632_consen 73 SPLLFLLALALWIG 86 (650)
T ss_pred CHHHHHHHHHHHHH
Confidence 54443344333333
No 7
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=61.29 E-value=26 Score=36.40 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHHHHHHHHhh
Q 026186 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIF 177 (242)
Q Consensus 100 ~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlIGv~~~~l~ 177 (242)
....+.+++.+.+++++++.+.+=- ..+....-...-+.|-..-+|..-+.|...=++.+.|.+++..+|..+....
T Consensus 347 ~~~h~A~~~glRa~~ai~~~~~fWI-~TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~v 423 (652)
T PRK10631 347 AERHHAMINGWRTTLATALGTLFWL-WTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVI 423 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346678888999999998876522 1222222334445677778899999998888999999999999998876543
No 8
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=53.08 E-value=52 Score=34.34 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=55.4
Q ss_pred hhhhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCc--cchhhhhhhH
Q 026186 87 IWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAA--RKYNVFMSQI 164 (242)
Q Consensus 87 ~l~~~~p~~~~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlA--QPrnVIgGHl 164 (242)
.|.+++..-.+..+.++..++..++.++++++...+.. +++. +..-.+++-.-|+.-.. +=+.-+.|.+
T Consensus 368 ~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l---~~gy------Wi~lTv~~V~qP~~~~T~~R~~~Ri~GTl 438 (701)
T TIGR01667 368 ILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTAL---HLGY------WILLTTLFVCQPNYGATRLRLVQRIIGTV 438 (701)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC---Ccch------HHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 44555555445556789999999988888887665532 1111 11222233233433332 3345678999
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHH
Q 026186 165 GCAAIGVLAFSIFGPGWLARSAGL 188 (242)
Q Consensus 165 iSAlIGv~~~~l~g~~wlAaaLAV 188 (242)
+++++|+.+..+++..+....+.+
T Consensus 439 ~G~llg~~l~~l~p~~~~~l~l~v 462 (701)
T TIGR01667 439 VGLVIGVALHFLIPSLEGQLTLMV 462 (701)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999888877776555444433
No 9
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=42.29 E-value=1e+02 Score=32.19 Aligned_cols=102 Identities=11% Similarity=-0.058 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhc---------CCCCCC--ccchhhhhhhHHHH
Q 026186 99 NPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFA---------TPSTPA--ARKYNVFMSQIGCA 167 (242)
Q Consensus 99 ~~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~---------~P~SPl--AQPrnVIgGHliSA 167 (242)
...|...++.++.+.+++.+--.++ .+.| -+.+..|.+.. -|.+-. ++=..-+.|.++++
T Consensus 6 ~~~~~falk~~lA~~LAL~ia~~l~-----L~~P----~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa 76 (652)
T PRK10631 6 NQRLRFAVKLAFAIVLALFVGFHFQ-----LETP----RWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGC 76 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-----CCCc----cHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHH
Confidence 3446667777777776666644433 1222 23444444443 232222 23334578999999
Q ss_pred HHHHHHHHhhChhHHHHHHHHH----HHHHHHHHhCCCCCC------CCcceee
Q 026186 168 AIGVLAFSIFGPGWLARSAGLA----ASIAFMIYARAPHPP------AASLPIL 211 (242)
Q Consensus 168 lIGv~~~~l~g~~wlAaaLAVa----lAI~~M~ltrtvHPP------AGAtALi 211 (242)
++|+++..+|++..+-..++++ +.+.+..+.|. |= ||-|+.+
T Consensus 77 ~~~l~l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~--~~sY~~~LaGyTa~i 128 (652)
T PRK10631 77 IAALVIIIATIRAPLLMILLCCIWAGFCTWISSLVRV--ENSYAWGLAGYTALI 128 (652)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHH
Confidence 9999999888755433333333 44444444443 33 5666654
No 10
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=39.02 E-value=77 Score=24.27 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=32.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhCCCCC
Q 026186 154 ARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHP 203 (242)
Q Consensus 154 AQPrnVIgGHliSAlIGv~~~~l~g~~wlAaaLAValAI~~M~ltrtvHP 203 (242)
-+-++-+.|.+++.++|..+..++++++ ...+.+.+......+++..++
T Consensus 34 ~~~~~Ri~Gt~iG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y 82 (128)
T PF13515_consen 34 NRAIQRILGTLIGVVLGLLLLYLFPGNY-VLILIVFLLMFLIFYFLSKNY 82 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhccH
Confidence 3457788999999999999998888763 334444444444445554333
No 11
>COG1289 Predicted membrane protein [Function unknown]
Probab=34.14 E-value=1.2e+02 Score=30.94 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCC---CCCccchhhhhhhHHHHHHHHHHHHhhC
Q 026186 102 LSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPS---TPAARKYNVFMSQIGCAAIGVLAFSIFG 178 (242)
Q Consensus 102 l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~---SPlAQPrnVIgGHliSAlIGv~~~~l~g 178 (242)
++..++.+++.+++.++.-.++. +++. .-...+.+.+.|. .|.-+=++-+.|-+++.++|.++..+.+
T Consensus 355 lr~a~R~ala~~~~~~~~~~~~w---~~g~------w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~ 425 (674)
T COG1289 355 LRHALRTALALLLGYAFWLALGW---PHGY------WILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLL 425 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CccH------HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666655555554433331 1111 1112334444555 3444445667788888888888888877
Q ss_pred hhHHH-HHHHHHHHHHHHHHhCCCCCCCCcce
Q 026186 179 PGWLA-RSAGLAASIAFMIYARAPHPPAASLP 209 (242)
Q Consensus 179 ~~wlA-aaLAValAI~~M~ltrtvHPPAGAtA 209 (242)
+.+.- ..+.++.++++|.+++...|.-+...
T Consensus 426 p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~ 457 (674)
T COG1289 426 PLIPGLLLLLLLAALLFAAGIRLAKYRLATLG 457 (674)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 65443 55666667777788888887655555
No 12
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.38 E-value=1.4e+02 Score=27.44 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=33.9
Q ss_pred chhhhhhhHHHHHHHHHHHHhhChhHHHHHHHHHHHHH--HHHHh---------CCCCCCCCcceee
Q 026186 156 KYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIA--FMIYA---------RAPHPPAASLPIL 211 (242)
Q Consensus 156 PrnVIgGHliSAlIGv~~~~l~g~~wlAaaLAValAI~--~M~lt---------rtvHPPAGAtALi 211 (242)
+|-+++.=+...++++++..+++..|+..-+++.++++ ++.++ +.-==||+|-+.+
T Consensus 28 ~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL 94 (224)
T PF13829_consen 28 PWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVL 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 45556666666777888888888766554444444433 33333 3445677777665
No 13
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.23 E-value=69 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCCccchhhhhhhHHHHHH
Q 026186 105 ILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAI 169 (242)
Q Consensus 105 ~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrnVIgGHliSAlI 169 (242)
-.|.++|+.+|-..+..- -.+.+.+|++....+ ++.||++++++
T Consensus 69 pwW~~~GG~lGa~~vt~s---------~~l~p~lGa~~t~~l------------~i~gQli~gll 112 (150)
T COG3238 69 PWWAWIGGLLGAIFVTSS---------ILLAPRLGAATTIAL------------VIAGQLIMGLL 112 (150)
T ss_pred chHHHHccchhhhhhhhh---------HHhccchhHHHHHHH------------HHHHHHHHHHH
Confidence 478888887776654322 245788898888765 57899887654
No 14
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=27.07 E-value=2.6e+02 Score=29.45 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=53.7
Q ss_pred hhhhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhhhHhhcCCCCCC--ccchhhhhhhH
Q 026186 87 IWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPA--ARKYNVFMSQI 164 (242)
Q Consensus 87 ~l~~~~p~~~~~~~~l~d~l~a~lGaflgI~ll~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPl--AQPrnVIgGHl 164 (242)
.|.+++..-.+..+.++..++-.++.+++.++...+.. +++. | ..-++++-.-|+--. .+=+.-+.|.+
T Consensus 366 ~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l---~~gy-W-----i~LTv~~V~qP~~~~T~~R~~~Ri~GTl 436 (704)
T TIGR01666 366 IWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGF---NLGY-W-----ILLTTLFVCQPNYSATKVRLRQRIIGTL 436 (704)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC---CCCc-h-----HHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45555555555566789999999988888877665542 1121 1 111222222343222 23345678999
Q ss_pred HHHHHHHHHHHhhChhHHH
Q 026186 165 GCAAIGVLAFSIFGPGWLA 183 (242)
Q Consensus 165 iSAlIGv~~~~l~g~~wlA 183 (242)
+++++|+.+..+.++.++.
T Consensus 437 lG~~lg~~ll~l~p~~~~~ 455 (704)
T TIGR01666 437 LGVVIGSPLLYFNPSLELQ 455 (704)
T ss_pred HHHHHHHHHHHHhccHHHH
Confidence 9999999988888766543
Done!