Query 026186
Match_columns 242
No_of_seqs 131 out of 591
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bya_B Glutamate [NMDA] recept 19.0 35 0.0012 20.4 0.7 14 58-71 11-24 (26)
2 2knc_B Integrin beta-3; transm 12.2 2.8E+02 0.0095 20.1 4.3 28 96-123 4-31 (79)
3 2lcn_A WALP19-P10 peptide; pro 11.0 1.7E+02 0.0059 17.3 2.2 16 181-196 4-19 (26)
4 2ww9_B Protein transport prote 9.6 1.9E+02 0.0065 21.5 2.6 26 99-124 41-66 (80)
5 1rh5_B Preprotein translocase 9.1 2.5E+02 0.0086 20.4 3.1 45 77-124 9-53 (74)
6 3mp7_B Preprotein translocase 8.1 4E+02 0.014 18.5 3.7 21 103-123 28-48 (61)
7 2lco_A WALP19-P8 peptide; prol 7.4 2.2E+02 0.0076 16.8 1.7 16 222-237 2-17 (26)
8 4hg6_B Cellulose synthase subu 7.3 2.7E+02 0.0094 28.2 3.4 34 159-192 666-699 (707)
9 2k9j_B Integrin beta-3; transm 6.8 5.5E+02 0.019 16.5 4.1 26 97-122 4-29 (43)
10 3org_A CMCLC; transporter, tra 6.5 3.3E+02 0.011 26.2 3.4 31 198-236 386-417 (632)
No 1
>3bya_B Glutamate [NMDA] receptor subunit zeta-1 peptide; calmodulin, EF hand motif, NR1, N-methyl-D-aspartate recepto glutamate, central nervous system; 1.85A {Homo sapiens} PDB: 2hqw_B
Probab=19.02 E-value=35 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.8
Q ss_pred cchhhhhhhhhccc
Q 026186 58 KETTSVIRRRKRKN 71 (242)
Q Consensus 58 ~~~~~~~~~~~~~~ 71 (242)
.++++++||||.++
T Consensus 11 tslass~krrrssk 24 (26)
T 3bya_B 11 STLASSFKRRRSSK 24 (26)
T ss_pred HHHHHHHHHhhhcc
Confidence 45788899988765
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.19 E-value=2.8e+02 Score=20.12 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=16.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026186 96 GSSNPSLSDILWPSAGAFAAMAILGKMD 123 (242)
Q Consensus 96 ~~~~~~l~d~l~a~lGaflgI~ll~~l~ 123 (242)
.|+.++..-++.+.+|+.+.++++.++.
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3445556667667777666665554443
No 3
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=10.97 E-value=1.7e+02 Score=17.29 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026186 181 WLARSAGLAASIAFMI 196 (242)
Q Consensus 181 wlAaaLAValAI~~M~ 196 (242)
|++.++|-++++++-.
T Consensus 4 wlalalapalalalww 19 (26)
T 2lcn_A 4 WLALALAPALALALWW 19 (26)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 5677777777776544
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.62 E-value=1.9e+02 Score=21.47 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=18.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHh
Q 026186 99 NPSLSDILWPSAGAFAAMAILGKMDQ 124 (242)
Q Consensus 99 ~~~l~d~l~a~lGaflgI~ll~~l~~ 124 (242)
+|+..|.....--+.+|++++|.+..
T Consensus 41 KPdr~Ef~~iak~t~iG~~imG~IGf 66 (80)
T 2ww9_B 41 KPDLKEYTKIVKAVGIGFIAVGIIGY 66 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777778888777764
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=9.11 E-value=2.5e+02 Score=20.40 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=23.6
Q ss_pred eeccCCcchhhhhhhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 026186 77 VASSSNVATPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQ 124 (242)
Q Consensus 77 v~as~~~~~~~l~~~~p~~~~~~~~l~d~l~a~lGaflgI~ll~~l~~ 124 (242)
+|...||.--+.+=++-.. +|+..|.....--+.+|++++|.+..
T Consensus 9 ~e~~~~f~kd~~rvlk~~~---KPdr~EF~~iak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 9 IEQLKEFIEECRRVWLVLK---KPTKDEYLAVAKVTALGISLLGIIGY 53 (74)
T ss_dssp ---CCHHHHHHHHHHHSEE---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333322 34457777777777777777776654
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.08 E-value=4e+02 Score=18.53 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026186 103 SDILWPSAGAFAAMAILGKMD 123 (242)
Q Consensus 103 ~d~l~a~lGaflgI~ll~~l~ 123 (242)
.|.....--+.+|+++++.+.
T Consensus 28 ~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 28 ATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666655554
No 7
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=7.37 E-value=2.2e+02 Score=16.82 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=12.1
Q ss_pred CchhhhHHHHHHHHHh
Q 026186 222 NFWYALFPGAAGCIIL 237 (242)
Q Consensus 222 g~~fvl~PVllgsliL 237 (242)
|||..+.|.+.-++.|
T Consensus 2 gwwlalapalalalal 17 (26)
T 2lco_A 2 GWWLALAPALALALAL 17 (26)
T ss_pred chHHHHhHHHHHHHHH
Confidence 8999999977665544
No 8
>4hg6_B Cellulose synthase subunit B; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=7.26 E-value=2.7e+02 Score=28.18 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Q 026186 159 VFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASI 192 (242)
Q Consensus 159 VIgGHliSAlIGv~~~~l~g~~wlAaaLAValAI 192 (242)
-+.||..|+--++++...++-.|.++++++++++
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (707)
T 4hg6_B 666 SVVGNVASARPPLLLGGMLGLAWISAAIAVGFVL 699 (707)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999998899988899999998888887764
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=6.80 E-value=5.5e+02 Score=16.50 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH
Q 026186 97 SSNPSLSDILWPSAGAFAAMAILGKM 122 (242)
Q Consensus 97 ~~~~~l~d~l~a~lGaflgI~ll~~l 122 (242)
|+.++..-+..+.+|+.+.+.++.++
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~lLl 29 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAALL 29 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555544433
No 10
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=6.48 E-value=3.3e+02 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=16.9
Q ss_pred hCCCCCCCCcceeee-eccccccccCchhhhHHHHHHHHH
Q 026186 198 ARAPHPPAASLPILF-IDGVKLHSLNFWYALFPGAAGCII 236 (242)
Q Consensus 198 trtvHPPAGAtALiv-l~~~~~~~lg~~fvl~PVllgsli 236 (242)
.+.+|.|..+. +++ +.+ ++.++ .|+++.+++
T Consensus 386 ~~v~~ap~t~v-i~~E~tg------~~~~~-lpl~ia~~~ 417 (632)
T 3org_A 386 AGVTRALSCAV-IIFEVTG------QIRHL-VPVLISVLL 417 (632)
T ss_dssp HHHSCCTTHHH-HHHHHTC------CCSCS-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhC------ChhHH-HHHHHHHHH
Confidence 34567787664 322 222 34433 488777665
Done!