BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026187
         (242 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 28/208 (13%)

Query: 34  LGAGACAGIIAMSATYPMDMVRGRLTVQTEK-------SPRQYRGIFHALTTVLREEGPR 86
           LGAG  A  IA   T+P+D  + RL +Q E        +  QYRG+   + T++R EGPR
Sbjct: 6   LGAGT-AACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64

Query: 87  SLYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXX 146
           SLY G +  +   + +  +   +Y+S+K +  K         +   G+ +RL        
Sbjct: 65  SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG--------SEHAGIGSRLLAGSTTGA 116

Query: 147 XXXXXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALY 206
                  P DV++ R Q       A    G G+      Y   V+A++   R EG   L+
Sbjct: 117 LAVAVAQPTDVVKVRFQ-------AQARAGGGR-----RYQSTVEAYKTIAREEGIRGLW 164

Query: 207 KGLVPNSVKVVPSIAIAFVTYEMVKDIL 234
           KG  PN  +         VTY+++KD L
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTL 192



 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 33  RLGAGACAGIIAMSATYPMDMVRGRLTVQTEKSP-RQYRGIFHALTTVLREEGPRSLYKG 91
           RL AG+  G +A++   P D+V+ R   Q      R+Y+    A  T+ REEG R L+KG
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166

Query: 92  WLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXXXXXXX 151
             P+V             Y+ +KD L+K+  +   DD     +                 
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLM--TDD-----LPCHFTSAFGAGFCTTVI 219

Query: 152 XYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVP 211
             P+DV++ R                    A  +Y+         +R EG  A YKG +P
Sbjct: 220 ASPVDVVKTRYM----------------NSALGQYHSAGHCALTMLRKEGPRAFYKGFMP 263

Query: 212 NSVKVVPSIAIAFVTYEMVKDIL 234
           + +++     + FVTYE +K  L
Sbjct: 264 SFLRLGSWNVVMFVTYEQLKRAL 286


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 23/203 (11%)

Query: 34  LGAGACAGIIAMSATYPMDMVRGRLTVQTEK--SPRQYRGIFHALTTVLREEGPRSLYKG 91
           L +G  AG  ++   YP+D  R RL     K  + R++ G+ + +T + + +G R LY+G
Sbjct: 116 LASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175

Query: 92  WLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELGVATRLXXXXXXXXXXXXX 151
           +  SV G+I Y    F VY++ K         G++ D   + +                 
Sbjct: 176 FNVSVQGIIIYRAAYFGVYDTAK---------GMLPDPKNVHIIVSWMIAQTVTAVAGLV 226

Query: 152 XYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGLVP 211
            YP D +RRRM M             G+  A + Y G VD +RK  + EG  A +KG   
Sbjct: 227 SYPFDTVRRRMMMQ-----------SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWS 275

Query: 212 NSVKVVPSIAIAFVTYEMVKDIL 234
           N ++ +   A   V Y+ +K  +
Sbjct: 276 NVLRGMGG-AFVLVLYDEIKKFV 297



 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 22/205 (10%)

Query: 36  AGACAGIIAMSATYPMDMVRGRLTVQTEK----SPRQYRGIFHALTTVLREEGPRSLYKG 91
           AG  A  I+ +A  P++ V+  L VQ       + +QY+GI   +  + +E+G  S ++G
Sbjct: 13  AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72

Query: 92  WLPSVIGVIPYVGLNFAVYESLKDWLIKSKALGLVDDNNELG--VATRLXXXXXXXXXXX 149
            L +VI   P   LNFA  +  K        LG VD + +     A  L           
Sbjct: 73  NLANVIRYFPTQALNFAFKDKYKQIF-----LGGVDRHKQFWRYFAGNLASGGAAGATSL 127

Query: 150 XXXYPLDVIRRRMQMAGWKDAASVVTGDGKTKATLEYNGMVDAFRKTVRHEGFGALYKGL 209
              YPLD  R R+       AA V    GK  A  E+ G+ +   K  + +G   LY+G 
Sbjct: 128 CFVYPLDFARTRL-------AADV----GKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176

Query: 210 VPNSVKVVPSIAIAFVTYEMVKDIL 234
             +   ++   A  F  Y+  K +L
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKGML 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,008,185
Number of Sequences: 62578
Number of extensions: 222478
Number of successful extensions: 511
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 7
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)