BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026188
MMHRCSSSHGNMVGSSCSCSSGLYPSQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCT
LSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAII
VVTPLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQ
TAQTSRQQRSSHMAITTIHGFKFNKRSRKKCLVFLLQMSLGSLKTVIKLLIRAFPSFLGD
SM

High Scoring Gene Products

Symbol, full name Information P value
MNP
AT3G50870
protein from Arabidopsis thaliana 2.6e-15
GATA20
AT2G18380
protein from Arabidopsis thaliana 1.8e-06
GATA19
AT4G36620
protein from Arabidopsis thaliana 2.7e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026188
        (242 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2077932 - symbol:MNP "MONOPOLE" species:3702 "...   193  2.6e-15   1
TAIR|locus:2062095 - symbol:GATA20 "GATA transcription fa...   124  1.8e-06   1
TAIR|locus:2115195 - symbol:GATA19 "GATA transcription fa...   123  2.7e-06   1


>TAIR|locus:2077932 [details] [associations]
            symbol:MNP "MONOPOLE" species:3702 "Arabidopsis thaliana"
            [GO:0003700 "sequence-specific DNA binding transcription factor
            activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA;IEP] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
            [GO:0009909 "regulation of flower development" evidence=IGI]
            [GO:0009790 "embryo development" evidence=IMP] [GO:0048446 "petal
            morphogenesis" evidence=RCA] InterPro:IPR000679 InterPro:IPR013088
            Pfam:PF00320 PROSITE:PS00344 PROSITE:PS50114 SMART:SM00401
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700
            GO:GO:0006351 GO:GO:0009790 GO:GO:0009909 EMBL:AL049862
            EMBL:AY086746 IPI:IPI00538242 PIR:T08408 RefSeq:NP_566939.1
            UniGene:At.27761 ProteinModelPortal:Q8LC79 SMR:Q8LC79
            EnsemblPlants:AT3G50870.1 GeneID:824251 KEGG:ath:AT3G50870
            GeneFarm:3909 TAIR:At3g50870 eggNOG:NOG315232 HOGENOM:HOG000238145
            InParanoid:Q8LC79 OMA:YPANEIR PhylomeDB:Q8LC79
            ProtClustDB:CLSN2917410 Genevestigator:Q8LC79 GermOnline:AT3G50870
            Uniprot:Q8LC79
        Length = 295

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/83 (49%), Positives = 55/83 (66%)

Query:    26 SQSNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRS 85
             S + S+SM+FSM N   +++       S S VDCTLSLGTPSTRL ++DEKR R      
Sbjct:    36 SNAGSYSMVFSMQNGGVFEQNGEDYHHSSSLVDCTLSLGTPSTRLCEEDEKR-RRSTSSG 94

Query:    86 ASNCMTDFCWDFLHTKNSPYNTA 108
             AS+C+++F WD +HTKN+   TA
Sbjct:    95 ASSCISNF-WDLIHTKNNNSKTA 116


>TAIR|locus:2062095 [details] [associations]
            symbol:GATA20 "GATA transcription factor 20" species:3702
            "Arabidopsis thaliana" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR000679 InterPro:IPR013088 Pfam:PF00320
            PROSITE:PS00344 PROSITE:PS50114 SMART:SM00401 GO:GO:0005634
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0043565
            GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006351
            EMBL:AC006439 HOGENOM:HOG000238145 EMBL:BT029505 EMBL:AB493551
            IPI:IPI00543361 PIR:F84563 RefSeq:NP_179429.2 UniGene:At.52803
            ProteinModelPortal:Q9ZPX0 SMR:Q9ZPX0 EnsemblPlants:AT2G18380.1
            GeneID:816353 KEGG:ath:AT2G18380 GeneFarm:3905 TAIR:At2g18380
            eggNOG:NOG243271 InParanoid:Q9ZPX0 OMA:SENDDQN
            ProtClustDB:CLSN2925484 Genevestigator:Q9ZPX0 GermOnline:AT2G18380
            Uniprot:Q9ZPX0
        Length = 208

 Score = 124 (48.7 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 37/89 (41%), Positives = 50/89 (56%)

Query:    24 YPSQSNSFSMLFSMPNH-KSYDETDMYA-FMSPSSVDCTLSLGTPSTRLSDDDEKRIRHD 81
             Y + SN FSM FS  N  +++   D Y  F S +SVDCTLSLGTPSTRL  DD  R    
Sbjct:     4 YQTNSN-FSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRL--DDHHRF--- 57

Query:    82 QRRSASNCMTDFCWDFLHTKNSPYNTAHK 110
                +++N   DF   ++H  N+  ++  K
Sbjct:    58 SSANSNNISGDF---YIHGGNAKTSSYKK 83


>TAIR|locus:2115195 [details] [associations]
            symbol:GATA19 "GATA transcription factor 19" species:3702
            "Arabidopsis thaliana" [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
            evidence=IEA] InterPro:IPR000679 InterPro:IPR013088 Pfam:PF00320
            PROSITE:PS00344 PROSITE:PS50114 SMART:SM00401 GO:GO:0005634
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0043565
            GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700 GO:GO:0006351
            EMBL:AL161589 EMBL:Z99708 HOGENOM:HOG000238145 EMBL:BT029506
            EMBL:AY530746 IPI:IPI00527696 PIR:D85432 RefSeq:NP_195380.1
            UniGene:At.54634 ProteinModelPortal:Q6QPM2 SMR:Q6QPM2
            EnsemblPlants:AT4G36620.1 GeneID:829814 KEGG:ath:AT4G36620
            GeneFarm:3911 TAIR:At4g36620 eggNOG:NOG241947 InParanoid:Q6QPM2
            OMA:ANNEYSY PhylomeDB:Q6QPM2 ProtClustDB:CLSN2915913
            ArrayExpress:Q6QPM2 Genevestigator:Q6QPM2 GermOnline:AT4G36620
            Uniprot:Q6QPM2
        Length = 211

 Score = 123 (48.4 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 33/69 (47%), Positives = 41/69 (59%)

Query:    31 FSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCM 90
             FSM FS  N  S+  +  YA     SVDCTLSLGTPSTRL ++D      D+RR +S+  
Sbjct:     3 FSMFFSPENDVSHHSSP-YA-----SVDCTLSLGTPSTRLCNED------DERRFSSHTS 50

Query:    91 TDFCWDFLH 99
                 WDFL+
Sbjct:    51 DTIGWDFLN 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      242       197   0.00082  111 3  11 22  0.41    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.49u 0.15s 15.64t   Elapsed:  00:00:01
  Total cpu time:  15.49u 0.15s 15.64t   Elapsed:  00:00:01
  Start:  Mon May 20 15:06:13 2013   End:  Mon May 20 15:06:14 2013

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