BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026188
         (242 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FGA|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
           Growth Factor At 1.6 Angstroms Resolution And Analysis
           Of Presumed Heparin Binding Sites By Selenate
           Substitution
 pdb|2FGF|A Chain A, Three-Dimensional Structure Of Human Basic Fibroblast
           Growth Factor, A Structural Homolog Of Interleukin 1beta
 pdb|4FGF|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
           Growth Factor At 1.6 Angstroms Resolution And Analysis
           Of Presumed Heparin Binding Sites By Selenate
           Substitution
          Length = 146

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 78  IRHDQRRSASNCMTDFCWDFLHTKNSPYNT 107
           ++ D R  AS C+TD C+ F   +++ YNT
Sbjct: 76  MKEDGRLLASKCVTDECFFFERLESNNYNT 105


>pdb|1BFF|A Chain A, The 154 Amino Acid Form Of Human Basic Fibroblast Growth
           Factor
          Length = 129

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 78  IRHDQRRSASNCMTDFCWDFLHTKNSPYNT 107
           ++ D R  AS C+TD C+ F   +++ YNT
Sbjct: 59  MKEDGRLLASKCVTDECFFFERLESNNYNT 88


>pdb|2BFH|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At 1.6
           Angstroms Resolution
          Length = 128

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 78  IRHDQRRSASNCMTDFCWDFLHTKNSPYNT 107
           ++ D R  AS C+TD C+ F   +++ YNT
Sbjct: 58  MKEDGRLLASKCVTDECFFFERLESNNYNT 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,264,860
Number of Sequences: 62578
Number of extensions: 153196
Number of successful extensions: 252
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 3
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)