BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026188
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2
SV=2
Length = 295
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 28 SNSFSMLFSMPNHKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSAS 87
+ S+SM+FSM N +++ S S VDCTLSLGTPSTRL ++DEKR R AS
Sbjct: 38 AGSYSMVFSMQNGGVFEQNGEDYHHSSSLVDCTLSLGTPSTRLCEEDEKR-RRSTSSGAS 96
Query: 88 NCMTDFCWDFLHTKN-----SPYN-----TAHKIIRPVAVAIIVVTPLVAAPAMIPSSPA 137
+C+++F WD +HTKN +PYN +A+K R + +++ A
Sbjct: 97 SCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCA 155
Query: 138 VVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQT 184
T + L R G + ++ G R K+EE + T T
Sbjct: 156 NCDTTSTPLWRNG-----PRGPKSLCNACGIRFKKEERRTTAATGNT 197
>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2
SV=2
Length = 208
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 27 QSNS-FSMLFSMPN----HKSYDETDMYAFMSPSSVDCTLSLGTPSTRLSDDDEKRIRHD 81
Q+NS FSM FS N H +YD + F S +SVDCTLSLGTPSTRL DD R
Sbjct: 5 QTNSNFSMFFSSENDDQNHHNYDPYNN--FSSSTSVDCTLSLGTPSTRL--DDHHRF--- 57
Query: 82 QRRSASNCMTDFCWDFLHTKNSPY---NTAHKIIRPVAVAIIVVTPL 125
+++N DF + K S Y AH + R A TPL
Sbjct: 58 SSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTSTPL 104
>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19
PE=2 SV=2
Length = 211
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 14/70 (20%)
Query: 31 FSMLFSMPNHKSYDETDMYAFMSP-SSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNC 89
FSM FS E D+ SP +SVDCTLSLGTPSTRL ++D D+RR +S+
Sbjct: 3 FSMFFSP-------ENDVSHHSSPYASVDCTLSLGTPSTRLCNED------DERRFSSHT 49
Query: 90 MTDFCWDFLH 99
WDFL+
Sbjct: 50 SDTIGWDFLN 59
>sp|B2GUY2|TFR2_RAT Transferrin receptor protein 2 OS=Rattus norvegicus GN=Tfr2 PE=2
SV=1
Length = 798
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 37/149 (24%)
Query: 38 PNHKSYDETDMYAFMSPS--------------SVDCTLSLGTPSTRLSDDDEKRIRHDQR 83
PNH D AF PS + T G P+ S ++ R+
Sbjct: 534 PNHSGQTLYDQVAFTHPSWDAEVIQPLPMDSSAYSFTAFAGVPAVEFSFMEDDRV----- 588
Query: 84 RSASNCMTDFCWDFLHTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVT 143
+ FLHTK Y HK++R A+++ +A +I S +L
Sbjct: 589 -----------YPFLHTKEDTYENLHKMLRGRLPAVVLAVAQLAGQLLIRLSHDHLL--- 634
Query: 144 PL-LHRFGETVLEAQSHYAMLVEFGSRRK 171
PL R+G+ VL H L EF K
Sbjct: 635 PLDFGRYGDVVLR---HIGNLNEFSGDLK 660
>sp|A1TI06|SYL_MYCVP Leucine--tRNA ligase OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=leuS PE=3 SV=1
Length = 968
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 80 HDQRRSASNCMTDFC----WDFLHTKNSPYNTAHKIIRPVAVAI 119
HD RRS S DF W FL N+ ++TA RPVA I
Sbjct: 153 HDSRRSFSTTDVDFYKWTQWIFLQIYNAWFDTAQNKARPVAELI 196
>sp|A4X9S8|SYL_SALTO Leucine--tRNA ligase OS=Salinispora tropica (strain ATCC BAA-916 /
DSM 44818 / CNB-440) GN=leuS PE=3 SV=1
Length = 954
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 78 IRHDQRRSASNCMTDFC----WDFLHTKNSPYNTAHKIIRPVA 116
+ HD+RRS + DF W FL N+ Y+++ K RP+A
Sbjct: 143 LAHDERRSVATIDADFYRWTQWVFLQIYNAWYDSSAKRARPIA 185
>sp|Q9LIE4|ZDHC8_ARATH Probable S-acyltransferase At3g22180 OS=Arabidopsis thaliana
GN=At3g22180 PE=1 SV=2
Length = 706
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 41 KSYDETDMYAFMSPSSVDCTLSL-GTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFL 98
++YDET SPS V + ++ G S + S +D +R+ RRS N + FC+ F+
Sbjct: 93 RNYDETGSQLQASPSVVSRSSTVAGNSSVKGSVEDAQRVESVSRRSCYNPLAVFCYVFV 151
>sp|Q9JKX3|TFR2_MOUSE Transferrin receptor protein 2 OS=Mus musculus GN=Tfr2 PE=2 SV=2
Length = 798
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 40 HKSYDETDMYAF-MSPSSVDCTLSLGTPSTRLSDDDEKRIRHDQRRSASNCMTDFCWDFL 98
H S+D + M S+ T G P+ S ++ R+ + FL
Sbjct: 549 HPSWDAEVIQPLPMDSSAYSFTAFAGVPAVEFSFMEDDRV----------------YPFL 592
Query: 99 HTKNSPYNTAHKIIRPVAVAIIVVTPLVAAPAMIPSSPAVVLTVTPL-LHRFGETVLEAQ 157
HTK Y HK++R A++ +A +I S +L PL R+G+ VL
Sbjct: 593 HTKEDTYENLHKMLRGRLPAVVQAVAQLAGQLLIRLSHDHLL---PLDFGRYGDVVLR-- 647
Query: 158 SHYAMLVEF-GSRRKREEPQQQMQTAQ 183
H L EF G ++R Q + +A+
Sbjct: 648 -HIGNLNEFSGDLKERGLTLQWVYSAR 673
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,433,068
Number of Sequences: 539616
Number of extensions: 3115318
Number of successful extensions: 13553
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 13521
Number of HSP's gapped (non-prelim): 32
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)