Query 026188
Match_columns 242
No_of_seqs 119 out of 395
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00202 ZnF_GATA Zinc finger D 99.3 1.1E-12 2.3E-17 93.4 2.1 38 136-179 3-40 (54)
2 PF00320 GATA: GATA zinc finge 99.3 4.7E-13 1E-17 88.0 0.2 34 136-175 2-35 (36)
3 smart00401 ZnF_GATA zinc finge 99.2 5.5E-12 1.2E-16 88.8 1.6 39 127-176 3-41 (52)
4 KOG1601 GATA-4/5/6 transcripti 98.5 5.5E-08 1.2E-12 77.6 1.5 37 127-174 199-235 (340)
5 COG5641 GAT1 GATA Zn-finger-co 97.6 2.2E-05 4.8E-10 76.9 1.6 42 124-177 155-201 (498)
6 KOG3554 Histone deacetylase co 57.7 6.8 0.00015 40.1 2.1 39 126-173 385-423 (693)
7 KOG4172 Predicted E3 ubiquitin 47.7 7.2 0.00016 29.5 0.4 16 158-173 26-41 (62)
8 COG5641 GAT1 GATA Zn-finger-co 42.0 13 0.00029 37.3 1.3 30 141-176 307-336 (498)
9 PRK00420 hypothetical protein; 39.9 32 0.0007 28.3 3.0 33 126-174 22-54 (112)
10 PF13717 zinc_ribbon_4: zinc-r 35.4 11 0.00024 24.9 -0.3 34 131-170 1-35 (36)
11 COG3529 Predicted nucleic-acid 33.4 13 0.00027 28.6 -0.3 33 127-170 10-42 (66)
12 PF12553 DUF3742: Protein of u 30.4 18 0.0004 26.3 0.2 10 144-154 34-43 (54)
13 PF09538 FYDLN_acid: Protein o 26.4 23 0.00049 28.8 0.1 12 162-173 28-39 (108)
14 PF13719 zinc_ribbon_5: zinc-r 25.9 18 0.0004 23.8 -0.4 35 131-170 1-35 (37)
15 TIGR02159 PA_CoA_Oxy4 phenylac 24.8 38 0.00082 28.6 1.1 32 136-170 109-140 (146)
16 PF09526 DUF2387: Probable met 24.7 25 0.00053 26.8 0.0 38 127-175 8-45 (71)
17 TIGR02443 conserved hypothetic 23.7 33 0.00072 25.8 0.5 38 127-175 9-46 (59)
18 PF13248 zf-ribbon_3: zinc-rib 20.1 72 0.0016 19.4 1.4 20 136-169 6-25 (26)
No 1
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=99.29 E-value=1.1e-12 Score=93.39 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhh
Q 026188 136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQM 179 (242)
Q Consensus 136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~ 179 (242)
.+|+++.||+| |+||.|.. .||||||+||++.....+.
T Consensus 3 ~~C~~~~Tp~W-R~g~~~~~-----~LCNaCgl~~~k~~~~rp~ 40 (54)
T cd00202 3 SNCGTTTTPLW-RRGPSGGS-----TLCNACGLYWKKHGVMRPL 40 (54)
T ss_pred CCCCCCCCccc-ccCCCCcc-----hHHHHHHHHHHhcCCCCCc
Confidence 99999999999 99998888 8999999999998744443
No 2
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=99.29 E-value=4.7e-13 Score=88.05 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=27.8
Q ss_pred CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188 136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP 175 (242)
Q Consensus 136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~ 175 (242)
.+|++++||+| |+||.|.. +||||||++|+|...
T Consensus 2 ~~C~tt~t~~W-R~~~~g~~-----~LCn~Cg~~~kk~~~ 35 (36)
T PF00320_consen 2 SNCGTTETPQW-RRGPNGNR-----TLCNACGLYYKKYGK 35 (36)
T ss_dssp TTT--ST-SSE-EEETTSEE------EEHHHHHHHHHHSS
T ss_pred cCCcCCCCchh-hcCCCCCC-----HHHHHHHHHHHHhCC
Confidence 89999999999 99999998 899999999998753
No 3
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=99.19 E-value=5.5e-12 Score=88.79 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=35.3
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ 176 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r 176 (242)
.+.| .+|+++.||+| |.||.|.. .||||||++|++....
T Consensus 3 ~~~C-----~~C~~~~T~~W-R~g~~g~~-----~LCnaCgl~~~k~~~~ 41 (52)
T smart00401 3 GRSC-----SNCGTTETPLW-RRGPSGNK-----TLCNACGLYYKKHGGL 41 (52)
T ss_pred CCCc-----CCCCCCCCCcc-ccCCCCCC-----cEeecccHHHHHcCCC
Confidence 4677 99999999999 99999997 8999999999987765
No 4
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=98.46 E-value=5.5e-08 Score=77.58 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=33.6
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccc
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREE 174 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~ 174 (242)
...| .+|.++.||+| |.+|.|++ .+|||||++||+..
T Consensus 199 ~~~c-----~~~~~~~t~~~-r~~~~g~~-----~~cnacgl~~k~~~ 235 (340)
T KOG1601|consen 199 LRQC-----SNCGTTKTPLW-RRGPEGPK-----SLCNACGLRYKKGG 235 (340)
T ss_pred Cccc-----CCCCCCCCcce-ecCCCCCc-----cccccchhhhhhcC
Confidence 3667 99999999999 99999977 89999999999985
No 5
>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]
Probab=97.61 E-value=2.2e-05 Score=76.92 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=34.4
Q ss_pred CCCccccCCCCCCCcccCCCCccccCCCC-----ccccccchhhhhhhhhhhcccchhh
Q 026188 124 PLVAAPAMIPSSPAVVLTVTPLLHRFGET-----VLEAQSHYAMLVEFGSRRKREEPQQ 177 (242)
Q Consensus 124 p~~~~~c~~~~~~~C~tt~TPlW~R~Gp~-----g~~~~~~~tLCNACGlr~kk~~~r~ 177 (242)
+.....| .+|.|+.||+| |+++. |. .|||||||++|-...-.
T Consensus 155 s~~~~vc-----~Nc~t~stPlw-rR~~~~~s~~~n------~lcnaCgl~~klhg~~r 201 (498)
T COG5641 155 SNQPHVC-----SNCKTTSTPLW-RRASSESSLPGN------NLCNACGLYLKLHGSPR 201 (498)
T ss_pred ccccchh-----ccccccCCccc-cccccccccCCc------cccccccccccccCCcC
Confidence 3445578 99999999999 88888 65 49999999999876655
No 6
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=57.71 E-value=6.8 Score=40.09 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=33.4
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhccc
Q 026188 126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKRE 173 (242)
Q Consensus 126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~ 173 (242)
..+.| .+|+||..-+|.-.||.+-+ --||--|=++|||.
T Consensus 385 ~g~~C-----EsC~ttqs~qWYsWGppnmq----crLCasCWiyWKKy 423 (693)
T KOG3554|consen 385 DGRAC-----ESCYTTQSLQWYSWGPPNMQ----CRLCASCWIYWKKY 423 (693)
T ss_pred CCCcc-----cccccccccceeccCCCCcc----chhhHHHHHHHHHh
Confidence 36789 99999999999999988754 36999999999983
No 7
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.72 E-value=7.2 Score=29.53 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.8
Q ss_pred cchhhhhhhhhhhccc
Q 026188 158 SHYAMLVEFGSRRKRE 173 (242)
Q Consensus 158 ~~~tLCNACGlr~kk~ 173 (242)
.||-||-|||+|.+|.
T Consensus 26 GHMCmCy~Cg~rl~~~ 41 (62)
T KOG4172|consen 26 GHMCMCYACGLRLKKA 41 (62)
T ss_pred chHHhHHHHHHHHHHc
Confidence 4789999999999884
No 8
>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]
Probab=41.95 E-value=13 Score=37.30 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188 141 TVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ 176 (242)
Q Consensus 141 t~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r 176 (242)
+.||+|||.-.... .+|||||+.-+.....
T Consensus 307 ~~tp~~~r~~~~~s------~~~n~~~~~~~~~~~~ 336 (498)
T COG5641 307 TATPLWRRTSDKSS------FSCNASGSALKPPGSK 336 (498)
T ss_pred ccCccccccccccc------ccccccccccCCcccc
Confidence 77999955555554 6999999988764433
No 9
>PRK00420 hypothetical protein; Validated
Probab=39.95 E-value=32 Score=28.34 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.2
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccc
Q 026188 126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREE 174 (242)
Q Consensus 126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~ 174 (242)
....| +.|+ +|+. |. .+|. ..|..||..+.-..
T Consensus 22 l~~~C-----P~Cg---~pLf-~l-k~g~------~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 22 LSKHC-----PVCG---LPLF-EL-KDGE------VVCPVHGKVYIVKS 54 (112)
T ss_pred ccCCC-----CCCC---Ccce-ec-CCCc------eECCCCCCeeeecc
Confidence 44677 8888 7898 64 4554 59999999877544
No 10
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.35 E-value=11 Score=24.88 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=23.6
Q ss_pred CCCCCCCcccCCC-CccccCCCCccccccchhhhhhhhhhh
Q 026188 131 MIPSSPAVVLTVT-PLLHRFGETVLEAQSHYAMLVEFGSRR 170 (242)
Q Consensus 131 ~~~~~~~C~tt~T-PlW~R~Gp~g~~~~~~~tLCNACGlr~ 170 (242)
|+-++++|++... |.. +-.+.|.+ ..|-.||-.|
T Consensus 1 M~i~Cp~C~~~y~i~d~-~ip~~g~~-----v~C~~C~~~f 35 (36)
T PF13717_consen 1 MIITCPNCQAKYEIDDE-KIPPKGRK-----VRCSKCGHVF 35 (36)
T ss_pred CEEECCCCCCEEeCCHH-HCCCCCcE-----EECCCCCCEe
Confidence 4445588888653 555 67777777 7888888655
No 11
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=33.35 E-value=13 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=23.4
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhh
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRR 170 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~ 170 (242)
.+.| +.|.+..|-.|-|..-- +- .-|++||---
T Consensus 10 GA~C-----P~C~~~Dtl~mW~En~v-e~-----vECV~CG~~~ 42 (66)
T COG3529 10 GAVC-----PACQAQDTLAMWRENNV-EI-----VECVKCGHHM 42 (66)
T ss_pred cCCC-----cccchhhHHHHHHhcCC-ce-----EehhhcchHh
Confidence 4678 99999999876354422 22 5799999754
No 12
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=30.37 E-value=18 Score=26.30 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=9.0
Q ss_pred CccccCCCCcc
Q 026188 144 PLLHRFGETVL 154 (242)
Q Consensus 144 PlW~R~Gp~g~ 154 (242)
|+| |.||.|-
T Consensus 34 ~E~-R~G~~Gf 43 (54)
T PF12553_consen 34 PEW-REGPAGF 43 (54)
T ss_pred Hhh-eecCCCc
Confidence 899 9999984
No 13
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.36 E-value=23 Score=28.76 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=6.3
Q ss_pred hhhhhhhhhccc
Q 026188 162 MLVEFGSRRKRE 173 (242)
Q Consensus 162 LCNACGlr~kk~ 173 (242)
.|..||.-|...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 455555555444
No 14
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=25.93 E-value=18 Score=23.79 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=18.0
Q ss_pred CCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhh
Q 026188 131 MIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRR 170 (242)
Q Consensus 131 ~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~ 170 (242)
|+-++++|++.---.=.+-++.|-+ .-|-.||-.|
T Consensus 1 M~i~CP~C~~~f~v~~~~l~~~~~~-----vrC~~C~~~f 35 (37)
T PF13719_consen 1 MIITCPNCQTRFRVPDDKLPAGGRK-----VRCPKCGHVF 35 (37)
T ss_pred CEEECCCCCceEEcCHHHcccCCcE-----EECCCCCcEe
Confidence 4444577776543222233444444 5666666544
No 15
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.84 E-value=38 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCcccCCCCccccCCCCccccccchhhhhhhhhhh
Q 026188 136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRR 170 (242)
Q Consensus 136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~ 170 (242)
+.|+.+.|-+-.++|++--| ..| .|++|.--|
T Consensus 109 p~c~s~~t~~~s~fg~t~ck--a~~-~c~~c~epf 140 (146)
T TIGR02159 109 PRCGSADTTITSIFGPTACK--ALY-RCRACKEPF 140 (146)
T ss_pred CCCCCCCcEeecCCCChhhH--HHh-hhhhhCCcH
Confidence 99999999999999999887 223 699998654
No 16
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=24.74 E-value=25 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=27.7
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP 175 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~ 175 (242)
.+.| +.|....|-.|-+... ... --|.+||-.-.+...
T Consensus 8 Ga~C-----P~C~~~D~i~~~~e~~-ve~-----vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 8 GAVC-----PKCQAMDTIMMWRENG-VEY-----VECVECGYTERQPDQ 45 (71)
T ss_pred CccC-----CCCcCccEEEEEEeCC-ceE-----EEecCCCCeeccCCc
Confidence 4678 9999999998834432 333 689999987666554
No 17
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=23.72 E-value=33 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=26.7
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP 175 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~ 175 (242)
.+.| +.|+...|-.|-+.+..- +--|.+||-+-.+.+.
T Consensus 9 GA~C-----P~C~~~Dtl~~~~e~~~e------~vECv~Cg~~~~~~~~ 46 (59)
T TIGR02443 9 GAVC-----PACSAQDTLAMWKENNIE------LVECVECGYQEQQKDQ 46 (59)
T ss_pred cccC-----CCCcCccEEEEEEeCCce------EEEeccCCCccccCCc
Confidence 4678 999999998774544332 2589999987655443
No 18
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=20.07 E-value=72 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=13.7
Q ss_pred CCcccCCCCccccCCCCccccccchhhhhhhhhh
Q 026188 136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSR 169 (242)
Q Consensus 136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr 169 (242)
++|++...+.+ ..|..||.+
T Consensus 6 p~Cg~~~~~~~--------------~fC~~CG~~ 25 (26)
T PF13248_consen 6 PNCGAEIDPDA--------------KFCPNCGAK 25 (26)
T ss_pred cccCCcCCccc--------------ccChhhCCC
Confidence 88888655554 478888754
Done!